Multiple sequence alignment - TraesCS5D01G025800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G025800 chr5D 100.000 2801 0 0 1 2801 23073028 23075828 0.000000e+00 5173.0
1 TraesCS5D01G025800 chr5A 94.368 1012 48 4 930 1933 16974517 16975527 0.000000e+00 1544.0
2 TraesCS5D01G025800 chr5A 85.954 477 36 15 476 935 16974016 16974478 5.430000e-132 481.0
3 TraesCS5D01G025800 chr5A 85.821 134 5 6 2168 2291 16976200 16976329 2.260000e-26 130.0
4 TraesCS5D01G025800 chr5B 91.423 956 58 12 933 1874 16419860 16420805 0.000000e+00 1290.0
5 TraesCS5D01G025800 chr5B 91.643 359 23 7 2278 2633 16421104 16421458 9.020000e-135 490.0
6 TraesCS5D01G025800 chr5B 88.587 368 25 10 587 937 16419438 16419805 5.540000e-117 431.0
7 TraesCS5D01G025800 chr5B 81.119 429 58 16 441 852 16416497 16416919 3.480000e-84 322.0
8 TraesCS5D01G025800 chr5B 89.806 206 15 4 317 520 16419241 16419442 2.770000e-65 259.0
9 TraesCS5D01G025800 chr5B 82.724 301 36 11 533 822 16415254 16415549 1.290000e-63 254.0
10 TraesCS5D01G025800 chr5B 87.943 141 10 5 2667 2801 16421453 16421592 2.890000e-35 159.0
11 TraesCS5D01G025800 chr5B 91.139 79 7 0 1972 2050 16420977 16421055 1.060000e-19 108.0
12 TraesCS5D01G025800 chr7A 78.895 706 108 32 997 1677 709638944 709639633 9.210000e-120 440.0
13 TraesCS5D01G025800 chr7D 78.805 703 105 29 997 1677 616899883 616900563 1.540000e-117 433.0
14 TraesCS5D01G025800 chr7B 78.511 712 106 27 997 1677 710990575 710991270 9.270000e-115 424.0
15 TraesCS5D01G025800 chr7B 85.156 256 38 0 1268 1523 571892864 571892609 2.140000e-66 263.0
16 TraesCS5D01G025800 chrUn 85.714 70 7 2 552 621 418642173 418642107 1.390000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G025800 chr5D 23073028 23075828 2800 False 5173.000000 5173 100.000000 1 2801 1 chr5D.!!$F1 2800
1 TraesCS5D01G025800 chr5A 16974016 16976329 2313 False 718.333333 1544 88.714333 476 2291 3 chr5A.!!$F1 1815
2 TraesCS5D01G025800 chr5B 16415254 16421592 6338 False 414.125000 1290 88.048000 317 2801 8 chr5B.!!$F1 2484
3 TraesCS5D01G025800 chr7A 709638944 709639633 689 False 440.000000 440 78.895000 997 1677 1 chr7A.!!$F1 680
4 TraesCS5D01G025800 chr7D 616899883 616900563 680 False 433.000000 433 78.805000 997 1677 1 chr7D.!!$F1 680
5 TraesCS5D01G025800 chr7B 710990575 710991270 695 False 424.000000 424 78.511000 997 1677 1 chr7B.!!$F1 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.037419 ATGCCGCAAAATCAACCACC 60.037 50.0 0.00 0.0 0.00 4.61 F
167 168 0.309612 GCAAAATCAACCACCGTCGT 59.690 50.0 0.00 0.0 0.00 4.34 F
179 180 0.310543 ACCGTCGTTGTACGTGCTAA 59.689 50.0 4.97 0.0 43.14 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1134 4833 0.037590 GGTTGCAGGTGTGGGTATGA 59.962 55.0 0.0 0.0 0.0 2.15 R
1630 5353 0.103572 GCACCATCATCACCCATTGC 59.896 55.0 0.0 0.0 0.0 3.56 R
1887 5615 1.464734 TGAACACGAAAGCCCAACAA 58.535 45.0 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.982130 ACGTGGTGCATCTCCCTC 59.018 61.111 0.00 0.00 0.00 4.30
18 19 2.202797 CGTGGTGCATCTCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
20 21 1.663379 CGTGGTGCATCTCCCTCGTA 61.663 60.000 0.00 0.00 34.10 3.43
21 22 0.179108 GTGGTGCATCTCCCTCGTAC 60.179 60.000 0.00 0.00 0.00 3.67
23 24 0.386113 GGTGCATCTCCCTCGTACTC 59.614 60.000 0.00 0.00 0.00 2.59
24 25 1.394618 GTGCATCTCCCTCGTACTCT 58.605 55.000 0.00 0.00 0.00 3.24
25 26 1.066303 GTGCATCTCCCTCGTACTCTG 59.934 57.143 0.00 0.00 0.00 3.35
28 29 2.480416 GCATCTCCCTCGTACTCTGTTG 60.480 54.545 0.00 0.00 0.00 3.33
30 31 2.434428 TCTCCCTCGTACTCTGTTGTC 58.566 52.381 0.00 0.00 0.00 3.18
32 33 3.262660 TCTCCCTCGTACTCTGTTGTCTA 59.737 47.826 0.00 0.00 0.00 2.59
34 35 2.683867 CCCTCGTACTCTGTTGTCTAGG 59.316 54.545 0.00 0.00 0.00 3.02
35 36 3.345414 CCTCGTACTCTGTTGTCTAGGT 58.655 50.000 0.00 0.00 0.00 3.08
37 38 3.748083 TCGTACTCTGTTGTCTAGGTGT 58.252 45.455 0.00 0.00 0.00 4.16
40 41 4.613167 CGTACTCTGTTGTCTAGGTGTGAC 60.613 50.000 0.00 0.00 35.21 3.67
42 43 4.726583 ACTCTGTTGTCTAGGTGTGACTA 58.273 43.478 0.00 0.00 35.63 2.59
44 45 5.184096 ACTCTGTTGTCTAGGTGTGACTATG 59.816 44.000 0.00 0.00 35.63 2.23
46 47 3.056107 TGTTGTCTAGGTGTGACTATGGC 60.056 47.826 0.00 0.00 35.63 4.40
47 48 2.815158 TGTCTAGGTGTGACTATGGCA 58.185 47.619 0.00 0.00 35.63 4.92
48 49 3.374764 TGTCTAGGTGTGACTATGGCAT 58.625 45.455 4.88 4.88 35.63 4.40
49 50 4.542697 TGTCTAGGTGTGACTATGGCATA 58.457 43.478 7.06 7.06 35.63 3.14
50 51 4.959839 TGTCTAGGTGTGACTATGGCATAA 59.040 41.667 8.79 0.00 35.63 1.90
51 52 5.423931 TGTCTAGGTGTGACTATGGCATAAA 59.576 40.000 8.79 0.00 35.63 1.40
52 53 6.099701 TGTCTAGGTGTGACTATGGCATAAAT 59.900 38.462 8.79 0.00 35.63 1.40
53 54 6.647067 GTCTAGGTGTGACTATGGCATAAATC 59.353 42.308 8.79 9.63 0.00 2.17
54 55 5.636903 AGGTGTGACTATGGCATAAATCT 57.363 39.130 8.79 0.00 0.00 2.40
55 56 6.006275 AGGTGTGACTATGGCATAAATCTT 57.994 37.500 8.79 0.00 0.00 2.40
56 57 6.058183 AGGTGTGACTATGGCATAAATCTTC 58.942 40.000 8.79 7.60 0.00 2.87
60 61 9.224267 GTGTGACTATGGCATAAATCTTCATAT 57.776 33.333 8.79 0.00 0.00 1.78
61 62 9.440773 TGTGACTATGGCATAAATCTTCATATC 57.559 33.333 8.79 0.00 0.00 1.63
62 63 9.440773 GTGACTATGGCATAAATCTTCATATCA 57.559 33.333 8.79 0.00 0.00 2.15
63 64 9.662947 TGACTATGGCATAAATCTTCATATCAG 57.337 33.333 8.79 0.00 0.00 2.90
64 65 8.503458 ACTATGGCATAAATCTTCATATCAGC 57.497 34.615 8.79 0.00 0.00 4.26
65 66 8.327271 ACTATGGCATAAATCTTCATATCAGCT 58.673 33.333 8.79 0.00 0.00 4.24
66 67 7.627298 ATGGCATAAATCTTCATATCAGCTC 57.373 36.000 0.00 0.00 0.00 4.09
67 68 5.640783 TGGCATAAATCTTCATATCAGCTCG 59.359 40.000 0.00 0.00 0.00 5.03
68 69 5.641209 GGCATAAATCTTCATATCAGCTCGT 59.359 40.000 0.00 0.00 0.00 4.18
69 70 6.813649 GGCATAAATCTTCATATCAGCTCGTA 59.186 38.462 0.00 0.00 0.00 3.43
70 71 7.201478 GGCATAAATCTTCATATCAGCTCGTAC 60.201 40.741 0.00 0.00 0.00 3.67
71 72 7.329471 GCATAAATCTTCATATCAGCTCGTACA 59.671 37.037 0.00 0.00 0.00 2.90
72 73 9.196552 CATAAATCTTCATATCAGCTCGTACAA 57.803 33.333 0.00 0.00 0.00 2.41
73 74 7.470289 AAATCTTCATATCAGCTCGTACAAC 57.530 36.000 0.00 0.00 0.00 3.32
74 75 5.836821 TCTTCATATCAGCTCGTACAACT 57.163 39.130 0.00 0.00 0.00 3.16
75 76 5.582550 TCTTCATATCAGCTCGTACAACTG 58.417 41.667 0.00 0.00 0.00 3.16
76 77 4.983671 TCATATCAGCTCGTACAACTGT 57.016 40.909 6.66 0.00 33.12 3.55
77 78 4.672409 TCATATCAGCTCGTACAACTGTG 58.328 43.478 6.66 0.27 33.12 3.66
79 80 0.387565 TCAGCTCGTACAACTGTGCA 59.612 50.000 6.66 0.00 33.12 4.57
80 81 0.508641 CAGCTCGTACAACTGTGCAC 59.491 55.000 10.75 10.75 0.00 4.57
82 83 0.784778 GCTCGTACAACTGTGCACTC 59.215 55.000 19.41 0.00 0.00 3.51
83 84 1.053048 CTCGTACAACTGTGCACTCG 58.947 55.000 19.41 11.59 0.00 4.18
84 85 0.382873 TCGTACAACTGTGCACTCGT 59.617 50.000 19.41 12.27 0.00 4.18
85 86 0.502695 CGTACAACTGTGCACTCGTG 59.497 55.000 19.41 14.56 0.00 4.35
86 87 1.847818 GTACAACTGTGCACTCGTGA 58.152 50.000 19.41 0.00 0.00 4.35
89 90 1.290203 CAACTGTGCACTCGTGAAGT 58.710 50.000 19.41 8.96 39.44 3.01
90 91 1.665679 CAACTGTGCACTCGTGAAGTT 59.334 47.619 19.41 14.66 35.45 2.66
91 92 1.290203 ACTGTGCACTCGTGAAGTTG 58.710 50.000 19.41 0.00 35.45 3.16
92 93 0.583438 CTGTGCACTCGTGAAGTTGG 59.417 55.000 19.41 0.00 35.45 3.77
93 94 0.176910 TGTGCACTCGTGAAGTTGGA 59.823 50.000 19.41 0.00 35.45 3.53
94 95 1.295792 GTGCACTCGTGAAGTTGGAA 58.704 50.000 10.32 0.00 35.45 3.53
95 96 1.668751 GTGCACTCGTGAAGTTGGAAA 59.331 47.619 10.32 0.00 35.45 3.13
109 110 4.936891 AGTTGGAAAGTTCAATGAAGTGC 58.063 39.130 3.83 0.26 0.00 4.40
110 111 3.624326 TGGAAAGTTCAATGAAGTGCG 57.376 42.857 3.83 0.00 0.00 5.34
113 114 3.498397 GGAAAGTTCAATGAAGTGCGAGA 59.502 43.478 3.83 0.00 0.00 4.04
114 115 4.024048 GGAAAGTTCAATGAAGTGCGAGAA 60.024 41.667 3.83 0.00 0.00 2.87
116 117 4.675190 AGTTCAATGAAGTGCGAGAATG 57.325 40.909 2.02 0.00 0.00 2.67
117 118 4.067896 AGTTCAATGAAGTGCGAGAATGT 58.932 39.130 2.02 0.00 0.00 2.71
118 119 4.516698 AGTTCAATGAAGTGCGAGAATGTT 59.483 37.500 2.02 0.00 0.00 2.71
120 121 3.123453 TCAATGAAGTGCGAGAATGTTCG 59.877 43.478 0.00 0.00 43.23 3.95
121 122 1.428448 TGAAGTGCGAGAATGTTCGG 58.572 50.000 0.00 0.00 40.79 4.30
122 123 1.000394 TGAAGTGCGAGAATGTTCGGA 60.000 47.619 0.00 0.00 40.79 4.55
123 124 2.271800 GAAGTGCGAGAATGTTCGGAT 58.728 47.619 0.00 0.00 42.75 4.18
125 126 1.204704 AGTGCGAGAATGTTCGGATGA 59.795 47.619 0.00 0.00 42.75 2.92
126 127 2.159043 AGTGCGAGAATGTTCGGATGAT 60.159 45.455 0.00 0.00 42.75 2.45
127 128 3.068165 AGTGCGAGAATGTTCGGATGATA 59.932 43.478 0.00 0.00 42.75 2.15
128 129 3.990469 GTGCGAGAATGTTCGGATGATAT 59.010 43.478 0.00 0.00 42.75 1.63
129 130 4.090642 GTGCGAGAATGTTCGGATGATATC 59.909 45.833 0.00 0.00 42.75 1.63
130 131 4.021981 TGCGAGAATGTTCGGATGATATCT 60.022 41.667 3.98 0.00 40.79 1.98
133 134 5.164012 CGAGAATGTTCGGATGATATCTTGC 60.164 44.000 3.98 2.09 36.95 4.01
134 135 4.999950 AGAATGTTCGGATGATATCTTGCC 59.000 41.667 3.98 2.02 0.00 4.52
135 136 4.630644 ATGTTCGGATGATATCTTGCCT 57.369 40.909 3.98 0.00 0.00 4.75
136 137 4.422073 TGTTCGGATGATATCTTGCCTT 57.578 40.909 3.98 0.00 0.00 4.35
138 139 4.141733 TGTTCGGATGATATCTTGCCTTGA 60.142 41.667 3.98 0.00 0.00 3.02
140 141 3.897505 TCGGATGATATCTTGCCTTGAGA 59.102 43.478 3.98 0.00 0.00 3.27
141 142 4.529769 TCGGATGATATCTTGCCTTGAGAT 59.470 41.667 3.98 0.00 37.59 2.75
142 143 4.869297 CGGATGATATCTTGCCTTGAGATC 59.131 45.833 3.98 0.00 35.56 2.75
143 144 5.568223 CGGATGATATCTTGCCTTGAGATCA 60.568 44.000 3.98 9.35 43.36 2.92
145 146 6.316640 GGATGATATCTTGCCTTGAGATCATG 59.683 42.308 18.70 0.00 46.40 3.07
146 147 5.001874 TGATATCTTGCCTTGAGATCATGC 58.998 41.667 3.98 0.00 37.28 4.06
147 148 2.048444 TCTTGCCTTGAGATCATGCC 57.952 50.000 0.00 0.00 0.00 4.40
149 150 1.378882 TTGCCTTGAGATCATGCCGC 61.379 55.000 0.00 0.00 0.00 6.53
150 151 1.820906 GCCTTGAGATCATGCCGCA 60.821 57.895 0.00 0.00 0.00 5.69
151 152 1.378882 GCCTTGAGATCATGCCGCAA 61.379 55.000 0.00 0.00 0.00 4.85
152 153 1.097232 CCTTGAGATCATGCCGCAAA 58.903 50.000 0.00 0.00 0.00 3.68
153 154 1.473677 CCTTGAGATCATGCCGCAAAA 59.526 47.619 0.00 0.00 0.00 2.44
154 155 2.100252 CCTTGAGATCATGCCGCAAAAT 59.900 45.455 0.00 0.00 0.00 1.82
156 157 2.367486 TGAGATCATGCCGCAAAATCA 58.633 42.857 16.43 6.95 0.00 2.57
157 158 2.754002 TGAGATCATGCCGCAAAATCAA 59.246 40.909 16.43 5.77 0.00 2.57
158 159 3.111098 GAGATCATGCCGCAAAATCAAC 58.889 45.455 16.43 9.08 0.00 3.18
159 160 2.159198 AGATCATGCCGCAAAATCAACC 60.159 45.455 16.43 0.00 0.00 3.77
160 161 0.964700 TCATGCCGCAAAATCAACCA 59.035 45.000 0.00 0.00 0.00 3.67
162 163 0.037419 ATGCCGCAAAATCAACCACC 60.037 50.000 0.00 0.00 0.00 4.61
163 164 1.732683 GCCGCAAAATCAACCACCG 60.733 57.895 0.00 0.00 0.00 4.94
164 165 1.657556 CCGCAAAATCAACCACCGT 59.342 52.632 0.00 0.00 0.00 4.83
165 166 0.386731 CCGCAAAATCAACCACCGTC 60.387 55.000 0.00 0.00 0.00 4.79
166 167 0.724453 CGCAAAATCAACCACCGTCG 60.724 55.000 0.00 0.00 0.00 5.12
167 168 0.309612 GCAAAATCAACCACCGTCGT 59.690 50.000 0.00 0.00 0.00 4.34
168 169 1.268845 GCAAAATCAACCACCGTCGTT 60.269 47.619 0.00 0.00 0.00 3.85
169 170 2.380660 CAAAATCAACCACCGTCGTTG 58.619 47.619 2.84 2.84 41.61 4.10
170 171 1.670791 AAATCAACCACCGTCGTTGT 58.329 45.000 8.60 0.00 41.13 3.32
171 172 2.529780 AATCAACCACCGTCGTTGTA 57.470 45.000 8.60 0.00 41.13 2.41
172 173 1.787012 ATCAACCACCGTCGTTGTAC 58.213 50.000 8.60 0.00 41.13 2.90
173 174 0.594540 TCAACCACCGTCGTTGTACG 60.595 55.000 8.60 0.00 44.19 3.67
174 175 0.871163 CAACCACCGTCGTTGTACGT 60.871 55.000 1.19 0.00 43.14 3.57
176 177 2.651137 CCACCGTCGTTGTACGTGC 61.651 63.158 0.00 0.00 43.14 5.34
178 179 0.385849 CACCGTCGTTGTACGTGCTA 60.386 55.000 4.97 0.00 43.14 3.49
179 180 0.310543 ACCGTCGTTGTACGTGCTAA 59.689 50.000 4.97 0.00 43.14 3.09
180 181 0.704551 CCGTCGTTGTACGTGCTAAC 59.295 55.000 4.97 6.99 43.14 2.34
181 182 0.704551 CGTCGTTGTACGTGCTAACC 59.295 55.000 4.97 0.00 43.14 2.85
182 183 0.704551 GTCGTTGTACGTGCTAACCG 59.295 55.000 4.97 0.00 43.14 4.44
183 184 0.590682 TCGTTGTACGTGCTAACCGA 59.409 50.000 4.97 1.02 43.14 4.69
184 185 1.001924 TCGTTGTACGTGCTAACCGAA 60.002 47.619 4.97 0.00 43.14 4.30
185 186 1.987770 CGTTGTACGTGCTAACCGAAT 59.012 47.619 4.97 0.00 36.74 3.34
186 187 3.120025 TCGTTGTACGTGCTAACCGAATA 60.120 43.478 4.97 0.00 43.14 1.75
188 189 4.168760 GTTGTACGTGCTAACCGAATACT 58.831 43.478 4.97 0.00 0.00 2.12
190 191 2.573941 ACGTGCTAACCGAATACTCC 57.426 50.000 0.00 0.00 0.00 3.85
192 193 1.407979 CGTGCTAACCGAATACTCCCT 59.592 52.381 0.00 0.00 0.00 4.20
194 195 3.067180 CGTGCTAACCGAATACTCCCTTA 59.933 47.826 0.00 0.00 0.00 2.69
195 196 4.440525 CGTGCTAACCGAATACTCCCTTAA 60.441 45.833 0.00 0.00 0.00 1.85
196 197 4.807834 GTGCTAACCGAATACTCCCTTAAC 59.192 45.833 0.00 0.00 0.00 2.01
199 200 2.460669 ACCGAATACTCCCTTAACCGT 58.539 47.619 0.00 0.00 0.00 4.83
200 201 2.428530 ACCGAATACTCCCTTAACCGTC 59.571 50.000 0.00 0.00 0.00 4.79
201 202 2.692041 CCGAATACTCCCTTAACCGTCT 59.308 50.000 0.00 0.00 0.00 4.18
202 203 3.131755 CCGAATACTCCCTTAACCGTCTT 59.868 47.826 0.00 0.00 0.00 3.01
203 204 4.110482 CGAATACTCCCTTAACCGTCTTG 58.890 47.826 0.00 0.00 0.00 3.02
204 205 4.439968 GAATACTCCCTTAACCGTCTTGG 58.560 47.826 0.00 0.00 46.41 3.61
205 206 2.019807 ACTCCCTTAACCGTCTTGGA 57.980 50.000 0.00 0.00 42.00 3.53
206 207 2.547990 ACTCCCTTAACCGTCTTGGAT 58.452 47.619 0.00 0.00 42.00 3.41
209 210 3.958798 CTCCCTTAACCGTCTTGGATCTA 59.041 47.826 0.00 0.00 42.00 1.98
210 211 3.958798 TCCCTTAACCGTCTTGGATCTAG 59.041 47.826 0.00 0.00 42.00 2.43
211 212 3.492829 CCCTTAACCGTCTTGGATCTAGC 60.493 52.174 0.00 0.00 42.00 3.42
213 214 4.141914 CCTTAACCGTCTTGGATCTAGCTT 60.142 45.833 0.00 0.00 42.00 3.74
216 217 3.034635 ACCGTCTTGGATCTAGCTTCAT 58.965 45.455 0.00 0.00 42.00 2.57
218 219 3.553922 CCGTCTTGGATCTAGCTTCATCC 60.554 52.174 14.23 14.23 42.00 3.51
221 222 3.068732 TCTTGGATCTAGCTTCATCCACG 59.931 47.826 20.75 19.12 46.82 4.94
225 226 3.430929 GGATCTAGCTTCATCCACGTTGT 60.431 47.826 15.64 0.00 38.84 3.32
227 228 3.325870 TCTAGCTTCATCCACGTTGTTG 58.674 45.455 0.00 0.00 0.00 3.33
228 229 1.967319 AGCTTCATCCACGTTGTTGT 58.033 45.000 0.00 0.00 0.00 3.32
229 230 3.120321 AGCTTCATCCACGTTGTTGTA 57.880 42.857 0.00 0.00 0.00 2.41
230 231 2.806244 AGCTTCATCCACGTTGTTGTAC 59.194 45.455 0.00 0.00 0.00 2.90
231 232 2.806244 GCTTCATCCACGTTGTTGTACT 59.194 45.455 0.00 0.00 0.00 2.73
232 233 3.250040 GCTTCATCCACGTTGTTGTACTT 59.750 43.478 0.00 0.00 0.00 2.24
234 235 2.546368 TCATCCACGTTGTTGTACTTGC 59.454 45.455 0.00 0.00 0.00 4.01
235 236 0.931702 TCCACGTTGTTGTACTTGCG 59.068 50.000 0.00 0.00 0.00 4.85
237 238 1.529438 CCACGTTGTTGTACTTGCGAT 59.471 47.619 0.00 0.00 0.00 4.58
238 239 2.559872 CACGTTGTTGTACTTGCGATG 58.440 47.619 0.00 0.00 0.00 3.84
239 240 1.070175 ACGTTGTTGTACTTGCGATGC 60.070 47.619 0.00 0.00 0.00 3.91
240 241 1.194547 CGTTGTTGTACTTGCGATGCT 59.805 47.619 0.00 0.00 0.00 3.79
241 242 2.574322 GTTGTTGTACTTGCGATGCTG 58.426 47.619 0.00 0.00 0.00 4.41
242 243 1.877637 TGTTGTACTTGCGATGCTGT 58.122 45.000 0.00 0.00 0.00 4.40
243 244 2.217750 TGTTGTACTTGCGATGCTGTT 58.782 42.857 0.00 0.00 0.00 3.16
244 245 2.616376 TGTTGTACTTGCGATGCTGTTT 59.384 40.909 0.00 0.00 0.00 2.83
245 246 3.810386 TGTTGTACTTGCGATGCTGTTTA 59.190 39.130 0.00 0.00 0.00 2.01
247 248 5.049060 TGTTGTACTTGCGATGCTGTTTATT 60.049 36.000 0.00 0.00 0.00 1.40
248 249 5.621197 TGTACTTGCGATGCTGTTTATTT 57.379 34.783 0.00 0.00 0.00 1.40
249 250 5.389778 TGTACTTGCGATGCTGTTTATTTG 58.610 37.500 0.00 0.00 0.00 2.32
250 251 3.836949 ACTTGCGATGCTGTTTATTTGG 58.163 40.909 0.00 0.00 0.00 3.28
251 252 3.505680 ACTTGCGATGCTGTTTATTTGGA 59.494 39.130 0.00 0.00 0.00 3.53
252 253 4.158394 ACTTGCGATGCTGTTTATTTGGAT 59.842 37.500 0.00 0.00 0.00 3.41
253 254 4.717233 TGCGATGCTGTTTATTTGGATT 57.283 36.364 0.00 0.00 0.00 3.01
254 255 5.070770 TGCGATGCTGTTTATTTGGATTT 57.929 34.783 0.00 0.00 0.00 2.17
255 256 6.201226 TGCGATGCTGTTTATTTGGATTTA 57.799 33.333 0.00 0.00 0.00 1.40
256 257 6.625362 TGCGATGCTGTTTATTTGGATTTAA 58.375 32.000 0.00 0.00 0.00 1.52
257 258 7.093354 TGCGATGCTGTTTATTTGGATTTAAA 58.907 30.769 0.00 0.00 0.00 1.52
259 260 7.897800 GCGATGCTGTTTATTTGGATTTAAAAC 59.102 33.333 0.00 0.00 0.00 2.43
260 261 9.139174 CGATGCTGTTTATTTGGATTTAAAACT 57.861 29.630 0.00 0.00 32.57 2.66
263 264 9.823647 TGCTGTTTATTTGGATTTAAAACTTCA 57.176 25.926 0.00 0.00 32.57 3.02
304 305 9.598517 AATTTCTCTCAAAAAGTATTGTTTGCA 57.401 25.926 0.00 0.00 35.21 4.08
305 306 8.994429 TTTCTCTCAAAAAGTATTGTTTGCAA 57.006 26.923 0.00 0.00 39.16 4.08
306 307 9.598517 TTTCTCTCAAAAAGTATTGTTTGCAAT 57.401 25.926 0.00 0.00 46.14 3.56
313 314 9.950858 CAAAAAGTATTGTTTGCAATATTACGG 57.049 29.630 0.00 0.00 45.80 4.02
314 315 9.699703 AAAAAGTATTGTTTGCAATATTACGGT 57.300 25.926 0.00 0.00 45.80 4.83
319 320 5.830900 TGTTTGCAATATTACGGTTTTGC 57.169 34.783 0.00 9.44 43.60 3.68
320 321 5.533482 TGTTTGCAATATTACGGTTTTGCT 58.467 33.333 0.00 0.00 43.67 3.91
322 323 4.009798 TGCAATATTACGGTTTTGCTCG 57.990 40.909 14.45 0.00 43.67 5.03
323 324 3.685272 TGCAATATTACGGTTTTGCTCGA 59.315 39.130 14.45 0.00 43.67 4.04
326 327 5.729454 GCAATATTACGGTTTTGCTCGACAT 60.729 40.000 0.00 0.00 40.90 3.06
327 328 5.652744 ATATTACGGTTTTGCTCGACATC 57.347 39.130 0.00 0.00 0.00 3.06
328 329 2.442212 TACGGTTTTGCTCGACATCA 57.558 45.000 0.00 0.00 0.00 3.07
330 331 2.967362 ACGGTTTTGCTCGACATCATA 58.033 42.857 0.00 0.00 0.00 2.15
331 332 2.671396 ACGGTTTTGCTCGACATCATAC 59.329 45.455 0.00 0.00 0.00 2.39
332 333 2.670905 CGGTTTTGCTCGACATCATACA 59.329 45.455 0.00 0.00 0.00 2.29
333 334 3.309682 CGGTTTTGCTCGACATCATACAT 59.690 43.478 0.00 0.00 0.00 2.29
334 335 4.506288 CGGTTTTGCTCGACATCATACATA 59.494 41.667 0.00 0.00 0.00 2.29
335 336 5.177511 CGGTTTTGCTCGACATCATACATAT 59.822 40.000 0.00 0.00 0.00 1.78
336 337 6.364976 CGGTTTTGCTCGACATCATACATATA 59.635 38.462 0.00 0.00 0.00 0.86
338 339 8.721478 GGTTTTGCTCGACATCATACATATATT 58.279 33.333 0.00 0.00 0.00 1.28
341 342 9.921637 TTTGCTCGACATCATACATATATTACA 57.078 29.630 0.00 0.00 0.00 2.41
343 344 9.353999 TGCTCGACATCATACATATATTACAAC 57.646 33.333 0.00 0.00 0.00 3.32
344 345 9.353999 GCTCGACATCATACATATATTACAACA 57.646 33.333 0.00 0.00 0.00 3.33
371 1080 7.390718 AGAAATAGCGGTCAAAACTACATTTCT 59.609 33.333 9.31 9.31 0.00 2.52
434 1143 1.680207 GGGAGCAAATTCAGAGGCATC 59.320 52.381 0.00 0.00 0.00 3.91
435 1144 2.372264 GGAGCAAATTCAGAGGCATCA 58.628 47.619 0.00 0.00 0.00 3.07
457 1166 7.687941 TCAAAGATAGAAGGGTTGCTAAAAG 57.312 36.000 0.00 0.00 0.00 2.27
472 1181 8.657729 GGTTGCTAAAAGAGTCTCTAACAATAC 58.342 37.037 1.88 0.00 0.00 1.89
503 1212 0.666913 TAGACAATCGGCCGTCTAGC 59.333 55.000 27.15 13.21 42.41 3.42
525 1336 4.394795 CCTTTCATCGTCAAAATCGACAC 58.605 43.478 0.00 0.00 40.07 3.67
765 4383 1.822990 CCTTGCTTCCTGAGGTACGTA 59.177 52.381 0.00 0.00 0.00 3.57
808 4427 7.333528 TCCAGTTATTAATCAACCAATCAGC 57.666 36.000 0.00 0.00 0.00 4.26
817 4436 3.153919 TCAACCAATCAGCCAGTTAACC 58.846 45.455 0.88 0.00 0.00 2.85
884 4505 2.091541 TGGCAGCGAATTCCCTTTTAG 58.908 47.619 0.00 0.00 0.00 1.85
926 4552 0.526211 GGTGCGAATTCCCCTTTGTC 59.474 55.000 0.00 0.00 0.00 3.18
930 4556 2.569853 TGCGAATTCCCCTTTGTCTAGA 59.430 45.455 0.00 0.00 0.00 2.43
995 4685 0.764890 TCTTGGTAGCAGCTGGTTGT 59.235 50.000 25.47 0.00 0.00 3.32
1008 4698 2.954318 GCTGGTTGTAGCAATGGATGAT 59.046 45.455 0.00 0.00 43.17 2.45
1032 4722 1.278127 GACCTCGATTTCTCCAACCCA 59.722 52.381 0.00 0.00 0.00 4.51
1095 4791 1.630369 TGCTCCATGGACAGCTACTTT 59.370 47.619 22.52 0.00 0.00 2.66
1098 4794 3.683847 GCTCCATGGACAGCTACTTTGAT 60.684 47.826 11.44 0.00 0.00 2.57
1101 4797 4.019411 TCCATGGACAGCTACTTTGATGAA 60.019 41.667 11.44 0.00 0.00 2.57
1102 4798 4.885907 CCATGGACAGCTACTTTGATGAAT 59.114 41.667 5.56 0.00 0.00 2.57
1103 4799 6.057533 CCATGGACAGCTACTTTGATGAATA 58.942 40.000 5.56 0.00 0.00 1.75
1116 4815 4.529109 TGATGAATACCTCAACGACACA 57.471 40.909 0.00 0.00 37.67 3.72
1134 4833 2.282040 GAGCACCTTGCCTGCACT 60.282 61.111 0.00 0.00 46.52 4.40
1137 4836 1.975407 GCACCTTGCCTGCACTCAT 60.975 57.895 0.00 0.00 37.42 2.90
1173 4872 2.640989 CCCGTCGACGACAGTTCA 59.359 61.111 37.65 0.00 43.02 3.18
1410 5133 2.390599 GCTTCAGAATCACGCGGCA 61.391 57.895 12.47 0.00 0.00 5.69
1464 5187 2.439507 GCTTGTTGATATCAGGGGGAGA 59.560 50.000 5.39 0.00 0.00 3.71
1514 5237 3.423154 GCGGCCTGTGAAGAACGG 61.423 66.667 0.00 0.00 34.63 4.44
1630 5353 3.773418 ATCCAGGAATGCAGATGAGAG 57.227 47.619 0.00 0.00 0.00 3.20
1783 5509 1.450312 CCTTCTGGCTGCTTACCCG 60.450 63.158 0.00 0.00 0.00 5.28
1797 5523 2.642154 TACCCGGTTCTGAAAAGCAA 57.358 45.000 0.00 0.00 0.00 3.91
1850 5578 9.705290 TTTTGTTAGATAAATTCTTTTCTGGCC 57.295 29.630 0.00 0.00 35.79 5.36
1870 5598 3.489398 GCCAGACCAGTCTACGACAATAG 60.489 52.174 0.00 0.00 37.98 1.73
1876 5604 3.303495 CCAGTCTACGACAATAGTTTGCG 59.697 47.826 0.00 0.00 37.93 4.85
1878 5606 4.619760 CAGTCTACGACAATAGTTTGCGAA 59.380 41.667 0.00 0.00 36.52 4.70
1944 5672 9.399797 TGCATACTCATGAGAAAATATCTGTTT 57.600 29.630 29.27 4.34 38.96 2.83
1945 5673 9.661187 GCATACTCATGAGAAAATATCTGTTTG 57.339 33.333 29.27 9.57 38.96 2.93
1947 5675 6.779117 ACTCATGAGAAAATATCTGTTTGCG 58.221 36.000 29.27 0.00 38.96 4.85
1949 5677 7.119699 ACTCATGAGAAAATATCTGTTTGCGAA 59.880 33.333 29.27 0.00 38.96 4.70
1950 5678 7.243487 TCATGAGAAAATATCTGTTTGCGAAC 58.757 34.615 10.09 10.09 38.96 3.95
1951 5679 6.801539 TGAGAAAATATCTGTTTGCGAACT 57.198 33.333 17.65 0.44 38.96 3.01
1966 5812 7.040340 TGTTTGCGAACTAATTTTCCTTGGATA 60.040 33.333 17.65 0.00 36.70 2.59
1967 5813 7.455641 TTGCGAACTAATTTTCCTTGGATAA 57.544 32.000 0.00 0.00 0.00 1.75
2036 6195 5.444586 GCAATTAGCAATGTCACAATGTG 57.555 39.130 7.12 7.12 44.79 3.21
2040 6199 7.148540 GCAATTAGCAATGTCACAATGTGATTT 60.149 33.333 19.72 13.08 43.25 2.17
2041 6200 8.714179 CAATTAGCAATGTCACAATGTGATTTT 58.286 29.630 19.72 12.74 44.63 1.82
2053 6212 5.866633 ACAATGTGATTTTTGTGTCGTTGTT 59.133 32.000 0.00 0.00 34.87 2.83
2057 6216 5.514559 TGTGATTTTTGTGTCGTTGTTCATG 59.485 36.000 0.00 0.00 0.00 3.07
2104 6313 9.609346 AAGTTGTAGTAATAGTCAGTTTTGTGT 57.391 29.630 0.00 0.00 0.00 3.72
2108 6317 8.198778 TGTAGTAATAGTCAGTTTTGTGTGTCA 58.801 33.333 0.00 0.00 0.00 3.58
2117 6326 7.283127 AGTCAGTTTTGTGTGTCAAGTGATAAT 59.717 33.333 0.00 0.00 37.35 1.28
2118 6327 7.376866 GTCAGTTTTGTGTGTCAAGTGATAATG 59.623 37.037 0.00 0.00 37.35 1.90
2119 6328 7.281999 TCAGTTTTGTGTGTCAAGTGATAATGA 59.718 33.333 0.00 0.00 37.35 2.57
2120 6329 7.914871 CAGTTTTGTGTGTCAAGTGATAATGAA 59.085 33.333 0.00 0.00 37.35 2.57
2121 6330 8.465999 AGTTTTGTGTGTCAAGTGATAATGAAA 58.534 29.630 0.00 0.00 37.35 2.69
2122 6331 8.531530 GTTTTGTGTGTCAAGTGATAATGAAAC 58.468 33.333 0.00 0.00 37.35 2.78
2123 6332 7.566760 TTGTGTGTCAAGTGATAATGAAACT 57.433 32.000 0.00 0.00 35.29 2.66
2127 6336 6.770303 TGTGTCAAGTGATAATGAAACTGGAA 59.230 34.615 0.00 0.00 35.29 3.53
2128 6337 7.041167 TGTGTCAAGTGATAATGAAACTGGAAG 60.041 37.037 0.00 0.00 35.29 3.46
2129 6338 6.430925 TGTCAAGTGATAATGAAACTGGAAGG 59.569 38.462 0.00 0.00 39.30 3.46
2130 6339 6.655003 GTCAAGTGATAATGAAACTGGAAGGA 59.345 38.462 0.00 0.00 39.30 3.36
2131 6340 6.655003 TCAAGTGATAATGAAACTGGAAGGAC 59.345 38.462 0.00 0.00 39.30 3.85
2132 6341 5.501156 AGTGATAATGAAACTGGAAGGACC 58.499 41.667 0.00 0.00 39.30 4.46
2133 6342 5.251700 AGTGATAATGAAACTGGAAGGACCT 59.748 40.000 0.00 0.00 39.30 3.85
2134 6343 6.443849 AGTGATAATGAAACTGGAAGGACCTA 59.556 38.462 0.00 0.00 39.30 3.08
2135 6344 7.127955 AGTGATAATGAAACTGGAAGGACCTAT 59.872 37.037 0.00 0.00 39.30 2.57
2136 6345 7.227512 GTGATAATGAAACTGGAAGGACCTATG 59.772 40.741 0.00 0.00 39.30 2.23
2137 6346 5.520748 AATGAAACTGGAAGGACCTATGT 57.479 39.130 0.00 0.00 39.30 2.29
2138 6347 4.286297 TGAAACTGGAAGGACCTATGTG 57.714 45.455 0.00 0.00 39.30 3.21
2139 6348 2.789409 AACTGGAAGGACCTATGTGC 57.211 50.000 0.00 0.00 39.30 4.57
2140 6349 1.958288 ACTGGAAGGACCTATGTGCT 58.042 50.000 0.00 0.00 46.20 4.40
2141 6350 1.834263 ACTGGAAGGACCTATGTGCTC 59.166 52.381 0.00 0.00 43.06 4.26
2142 6351 1.139853 CTGGAAGGACCTATGTGCTCC 59.860 57.143 0.00 0.00 43.06 4.70
2143 6352 1.204146 GGAAGGACCTATGTGCTCCA 58.796 55.000 0.00 0.00 43.06 3.86
2144 6353 1.771255 GGAAGGACCTATGTGCTCCAT 59.229 52.381 0.00 0.00 43.06 3.41
2145 6354 2.486191 GGAAGGACCTATGTGCTCCATG 60.486 54.545 0.00 0.00 43.06 3.66
2146 6355 2.180946 AGGACCTATGTGCTCCATGA 57.819 50.000 0.00 0.00 39.14 3.07
2147 6356 2.481441 AGGACCTATGTGCTCCATGAA 58.519 47.619 0.00 0.00 39.14 2.57
2148 6357 3.051581 AGGACCTATGTGCTCCATGAAT 58.948 45.455 0.00 0.00 39.14 2.57
2149 6358 4.234550 AGGACCTATGTGCTCCATGAATA 58.765 43.478 0.00 0.00 39.14 1.75
2150 6359 4.660303 AGGACCTATGTGCTCCATGAATAA 59.340 41.667 0.00 0.00 39.14 1.40
2151 6360 5.311649 AGGACCTATGTGCTCCATGAATAAT 59.688 40.000 0.00 0.00 39.14 1.28
2152 6361 5.645497 GGACCTATGTGCTCCATGAATAATC 59.355 44.000 0.00 0.00 34.86 1.75
2153 6362 6.445451 ACCTATGTGCTCCATGAATAATCT 57.555 37.500 0.00 0.00 34.86 2.40
2154 6363 6.236409 ACCTATGTGCTCCATGAATAATCTG 58.764 40.000 0.00 0.00 34.86 2.90
2155 6364 5.123502 CCTATGTGCTCCATGAATAATCTGC 59.876 44.000 0.00 0.00 34.86 4.26
2156 6365 4.160642 TGTGCTCCATGAATAATCTGCT 57.839 40.909 0.00 0.00 0.00 4.24
2157 6366 4.132336 TGTGCTCCATGAATAATCTGCTC 58.868 43.478 0.00 0.00 0.00 4.26
2158 6367 4.141551 TGTGCTCCATGAATAATCTGCTCT 60.142 41.667 0.00 0.00 0.00 4.09
2159 6368 4.820716 GTGCTCCATGAATAATCTGCTCTT 59.179 41.667 0.00 0.00 0.00 2.85
2160 6369 4.820173 TGCTCCATGAATAATCTGCTCTTG 59.180 41.667 0.00 0.00 0.00 3.02
2161 6370 4.820716 GCTCCATGAATAATCTGCTCTTGT 59.179 41.667 0.00 0.00 0.00 3.16
2162 6371 5.298777 GCTCCATGAATAATCTGCTCTTGTT 59.701 40.000 0.00 0.00 0.00 2.83
2163 6372 6.183360 GCTCCATGAATAATCTGCTCTTGTTT 60.183 38.462 0.00 0.00 0.00 2.83
2164 6373 7.092137 TCCATGAATAATCTGCTCTTGTTTG 57.908 36.000 0.00 0.00 0.00 2.93
2165 6374 6.660521 TCCATGAATAATCTGCTCTTGTTTGT 59.339 34.615 0.00 0.00 0.00 2.83
2166 6375 6.750501 CCATGAATAATCTGCTCTTGTTTGTG 59.249 38.462 0.00 0.00 0.00 3.33
2200 6409 4.814234 CAGCACCAGTTGTTAGTTCACTTA 59.186 41.667 0.00 0.00 0.00 2.24
2209 6418 8.969267 CAGTTGTTAGTTCACTTACTTCTACAG 58.031 37.037 0.00 0.00 0.00 2.74
2218 6435 9.269453 GTTCACTTACTTCTACAGTATTGGTTT 57.731 33.333 0.00 0.00 37.84 3.27
2228 6445 4.356289 ACAGTATTGGTTTCGTTGCAAAC 58.644 39.130 0.00 0.00 45.31 2.93
2241 6458 1.171549 TGCAAACATTCCAGCTGCGA 61.172 50.000 8.66 4.33 35.76 5.10
2255 6474 0.391661 CTGCGACCTGTGCTTGGTAT 60.392 55.000 0.00 0.00 38.03 2.73
2264 6483 1.069568 TGTGCTTGGTATTTTGCGTCG 60.070 47.619 0.00 0.00 0.00 5.12
2265 6484 1.069500 GTGCTTGGTATTTTGCGTCGT 60.069 47.619 0.00 0.00 0.00 4.34
2266 6485 1.195900 TGCTTGGTATTTTGCGTCGTC 59.804 47.619 0.00 0.00 0.00 4.20
2267 6486 1.463444 GCTTGGTATTTTGCGTCGTCT 59.537 47.619 0.00 0.00 0.00 4.18
2306 6525 6.546395 CAAGTAGTGATTGCCAGTTTATCAC 58.454 40.000 0.00 0.00 45.30 3.06
2329 6548 9.483916 TCACTAGAAACTTCGTTCATTTATGAA 57.516 29.630 0.00 1.12 43.94 2.57
2338 6557 3.427503 CGTTCATTTATGAAGTGTGGCCC 60.428 47.826 0.00 0.00 46.44 5.80
2344 6563 2.904866 GAAGTGTGGCCCGTTGCA 60.905 61.111 0.00 0.00 43.89 4.08
2347 6566 0.323360 AAGTGTGGCCCGTTGCATAT 60.323 50.000 0.00 0.00 43.89 1.78
2431 6651 5.594317 AGTTGTGAACATTGCTTTAGTTCCT 59.406 36.000 0.00 0.00 40.58 3.36
2434 6654 5.359576 TGTGAACATTGCTTTAGTTCCTGTT 59.640 36.000 0.00 0.00 40.58 3.16
2441 6661 7.068226 ACATTGCTTTAGTTCCTGTTTTAGTGT 59.932 33.333 0.00 0.00 0.00 3.55
2448 6668 4.705023 AGTTCCTGTTTTAGTGTGCAAACT 59.295 37.500 15.35 15.35 34.52 2.66
2465 6685 0.383231 ACTTGCTGTCTTGTTGCTGC 59.617 50.000 0.00 0.00 0.00 5.25
2466 6686 0.666913 CTTGCTGTCTTGTTGCTGCT 59.333 50.000 0.00 0.00 0.00 4.24
2467 6687 0.382873 TTGCTGTCTTGTTGCTGCTG 59.617 50.000 0.00 0.00 0.00 4.41
2470 6690 0.040336 CTGTCTTGTTGCTGCTGCTG 60.040 55.000 17.00 0.77 40.48 4.41
2472 6692 1.229428 GTCTTGTTGCTGCTGCTGTA 58.771 50.000 17.00 0.48 40.48 2.74
2473 6693 1.808945 GTCTTGTTGCTGCTGCTGTAT 59.191 47.619 17.00 0.00 40.48 2.29
2474 6694 2.079158 TCTTGTTGCTGCTGCTGTATC 58.921 47.619 17.00 3.89 40.48 2.24
2475 6695 2.082231 CTTGTTGCTGCTGCTGTATCT 58.918 47.619 17.00 0.00 40.48 1.98
2476 6696 2.189594 TGTTGCTGCTGCTGTATCTT 57.810 45.000 17.00 0.00 40.48 2.40
2477 6697 1.808343 TGTTGCTGCTGCTGTATCTTG 59.192 47.619 17.00 0.00 40.48 3.02
2478 6698 1.808945 GTTGCTGCTGCTGTATCTTGT 59.191 47.619 17.00 0.00 40.48 3.16
2479 6699 1.730501 TGCTGCTGCTGTATCTTGTC 58.269 50.000 17.00 0.00 40.48 3.18
2483 6703 3.332919 CTGCTGCTGTATCTTGTCTGTT 58.667 45.455 0.00 0.00 0.00 3.16
2493 6713 7.571428 GCTGTATCTTGTCTGTTTCCAGTAAAC 60.571 40.741 0.00 0.00 46.46 2.01
2504 6724 6.290605 TGTTTCCAGTAAACTAGTAACCCAC 58.709 40.000 0.00 0.00 46.42 4.61
2553 6773 3.432186 CCATGGCGTGAATCTTCTCCTTA 60.432 47.826 8.63 0.00 0.00 2.69
2564 6784 1.280421 CTTCTCCTTAGGCAGGCACTT 59.720 52.381 0.00 0.00 43.55 3.16
2576 6796 2.333701 AGGCACTTTCGGTTCCCGTT 62.334 55.000 2.21 0.00 42.62 4.44
2609 6829 9.921637 AGACTGTATAAATTGCTAGCTTCTATC 57.078 33.333 17.23 0.88 0.00 2.08
2612 6832 6.590292 TGTATAAATTGCTAGCTTCTATCGGC 59.410 38.462 17.23 0.52 0.00 5.54
2624 6844 0.390603 CTATCGGCCGTGTTGGTTCA 60.391 55.000 27.15 1.58 41.21 3.18
2633 6853 1.395608 CGTGTTGGTTCAAACTGTCGT 59.604 47.619 0.00 0.00 0.00 4.34
2634 6854 2.780993 GTGTTGGTTCAAACTGTCGTG 58.219 47.619 0.00 0.00 0.00 4.35
2635 6855 1.131504 TGTTGGTTCAAACTGTCGTGC 59.868 47.619 0.00 0.00 0.00 5.34
2636 6856 0.375454 TTGGTTCAAACTGTCGTGCG 59.625 50.000 0.00 0.00 0.00 5.34
2637 6857 0.741574 TGGTTCAAACTGTCGTGCGT 60.742 50.000 0.00 0.00 0.00 5.24
2638 6858 0.315869 GGTTCAAACTGTCGTGCGTG 60.316 55.000 0.00 0.00 0.00 5.34
2639 6859 0.372334 GTTCAAACTGTCGTGCGTGT 59.628 50.000 0.00 0.00 0.00 4.49
2640 6860 0.371989 TTCAAACTGTCGTGCGTGTG 59.628 50.000 0.00 0.00 0.00 3.82
2641 6861 0.738063 TCAAACTGTCGTGCGTGTGT 60.738 50.000 0.00 0.00 0.00 3.72
2642 6862 0.586256 CAAACTGTCGTGCGTGTGTG 60.586 55.000 0.00 0.00 0.00 3.82
2643 6863 1.017177 AAACTGTCGTGCGTGTGTGT 61.017 50.000 0.00 0.00 0.00 3.72
2644 6864 1.692148 AACTGTCGTGCGTGTGTGTG 61.692 55.000 0.00 0.00 0.00 3.82
2645 6865 2.125872 TGTCGTGCGTGTGTGTGT 60.126 55.556 0.00 0.00 0.00 3.72
2646 6866 2.319707 GTCGTGCGTGTGTGTGTG 59.680 61.111 0.00 0.00 0.00 3.82
2647 6867 2.125872 TCGTGCGTGTGTGTGTGT 60.126 55.556 0.00 0.00 0.00 3.72
2648 6868 2.021243 CGTGCGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
2649 6869 2.735677 CGTGCGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
2650 6870 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2651 6871 1.669437 TGCGTGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
2652 6872 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2653 6873 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
2654 6874 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2655 6875 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2656 6876 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2657 6877 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2658 6878 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2659 6879 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2660 6880 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2661 6881 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2662 6882 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2663 6883 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
2664 6884 1.737236 GTGTGTGTGTGTGTGTGTGAT 59.263 47.619 0.00 0.00 0.00 3.06
2665 6885 2.161410 GTGTGTGTGTGTGTGTGTGATT 59.839 45.455 0.00 0.00 0.00 2.57
2666 6886 2.418280 TGTGTGTGTGTGTGTGTGATTC 59.582 45.455 0.00 0.00 0.00 2.52
2667 6887 2.677836 GTGTGTGTGTGTGTGTGATTCT 59.322 45.455 0.00 0.00 0.00 2.40
2668 6888 2.677337 TGTGTGTGTGTGTGTGATTCTG 59.323 45.455 0.00 0.00 0.00 3.02
2669 6889 2.677836 GTGTGTGTGTGTGTGATTCTGT 59.322 45.455 0.00 0.00 0.00 3.41
2670 6890 2.935849 TGTGTGTGTGTGTGATTCTGTC 59.064 45.455 0.00 0.00 0.00 3.51
2671 6891 2.033747 GTGTGTGTGTGTGATTCTGTCG 60.034 50.000 0.00 0.00 0.00 4.35
2687 6907 2.161855 TGTCGCCAATGATGCTTCTTT 58.838 42.857 0.88 0.00 0.00 2.52
2692 6912 2.162208 GCCAATGATGCTTCTTTGACGA 59.838 45.455 22.37 0.00 38.60 4.20
2721 6941 0.383949 GCGCTGAAACTTTGTTGGGA 59.616 50.000 0.00 0.00 0.00 4.37
2722 6942 1.600413 GCGCTGAAACTTTGTTGGGAG 60.600 52.381 0.00 0.00 0.00 4.30
2723 6943 1.600413 CGCTGAAACTTTGTTGGGAGC 60.600 52.381 0.00 0.00 0.00 4.70
2724 6944 1.269778 GCTGAAACTTTGTTGGGAGCC 60.270 52.381 0.00 0.00 0.00 4.70
2725 6945 2.031120 CTGAAACTTTGTTGGGAGCCA 58.969 47.619 0.00 0.00 0.00 4.75
2726 6946 2.629617 CTGAAACTTTGTTGGGAGCCAT 59.370 45.455 0.00 0.00 31.53 4.40
2727 6947 3.037549 TGAAACTTTGTTGGGAGCCATT 58.962 40.909 0.00 0.00 31.53 3.16
2728 6948 3.454082 TGAAACTTTGTTGGGAGCCATTT 59.546 39.130 0.00 0.00 31.53 2.32
2729 6949 3.473923 AACTTTGTTGGGAGCCATTTG 57.526 42.857 0.00 0.00 31.53 2.32
2743 6968 2.459644 CCATTTGGGCATTCTCCTTCA 58.540 47.619 0.00 0.00 0.00 3.02
2744 6969 2.833338 CCATTTGGGCATTCTCCTTCAA 59.167 45.455 0.00 0.00 0.00 2.69
2756 6981 4.034285 TCTCCTTCAATTTTCCCTGGTC 57.966 45.455 0.00 0.00 0.00 4.02
2765 6990 0.111446 TTTCCCTGGTCGCCATTTCA 59.889 50.000 0.00 0.00 30.82 2.69
2775 7000 3.305064 GGTCGCCATTTCAAGTTTTGCTA 60.305 43.478 0.00 0.00 0.00 3.49
2793 7019 2.678190 GCTATGGAGTTCGACAGCCTTT 60.678 50.000 0.00 0.00 0.00 3.11
2794 7020 1.813513 ATGGAGTTCGACAGCCTTTG 58.186 50.000 0.00 0.00 0.00 2.77
2795 7021 0.884704 TGGAGTTCGACAGCCTTTGC 60.885 55.000 0.00 0.00 37.95 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.982130 GAGGGAGATGCACCACGT 59.018 61.111 0.00 0.00 0.00 4.49
1 2 1.663379 TACGAGGGAGATGCACCACG 61.663 60.000 8.92 8.92 35.93 4.94
2 3 0.179108 GTACGAGGGAGATGCACCAC 60.179 60.000 0.00 0.00 0.00 4.16
3 4 0.324368 AGTACGAGGGAGATGCACCA 60.324 55.000 0.00 0.00 0.00 4.17
4 5 0.386113 GAGTACGAGGGAGATGCACC 59.614 60.000 0.00 0.00 0.00 5.01
5 6 1.066303 CAGAGTACGAGGGAGATGCAC 59.934 57.143 0.00 0.00 0.00 4.57
7 8 1.394618 ACAGAGTACGAGGGAGATGC 58.605 55.000 0.00 0.00 0.00 3.91
8 9 2.755655 ACAACAGAGTACGAGGGAGATG 59.244 50.000 0.00 0.00 0.00 2.90
9 10 3.018149 GACAACAGAGTACGAGGGAGAT 58.982 50.000 0.00 0.00 0.00 2.75
11 12 2.438411 AGACAACAGAGTACGAGGGAG 58.562 52.381 0.00 0.00 0.00 4.30
12 13 2.581216 AGACAACAGAGTACGAGGGA 57.419 50.000 0.00 0.00 0.00 4.20
13 14 2.683867 CCTAGACAACAGAGTACGAGGG 59.316 54.545 0.00 0.00 0.00 4.30
14 15 3.127203 CACCTAGACAACAGAGTACGAGG 59.873 52.174 0.00 0.00 0.00 4.63
15 16 3.752222 ACACCTAGACAACAGAGTACGAG 59.248 47.826 0.00 0.00 0.00 4.18
16 17 3.501062 CACACCTAGACAACAGAGTACGA 59.499 47.826 0.00 0.00 0.00 3.43
17 18 3.501062 TCACACCTAGACAACAGAGTACG 59.499 47.826 0.00 0.00 0.00 3.67
18 19 4.519730 AGTCACACCTAGACAACAGAGTAC 59.480 45.833 0.00 0.00 38.46 2.73
20 21 3.567397 AGTCACACCTAGACAACAGAGT 58.433 45.455 0.00 0.00 38.46 3.24
21 22 5.393569 CCATAGTCACACCTAGACAACAGAG 60.394 48.000 0.00 0.00 38.46 3.35
23 24 4.748892 CCATAGTCACACCTAGACAACAG 58.251 47.826 0.00 0.00 38.46 3.16
24 25 3.056107 GCCATAGTCACACCTAGACAACA 60.056 47.826 0.00 0.00 38.46 3.33
25 26 3.056107 TGCCATAGTCACACCTAGACAAC 60.056 47.826 0.00 0.00 38.46 3.32
28 29 5.531122 TTATGCCATAGTCACACCTAGAC 57.469 43.478 0.00 0.00 36.26 2.59
30 31 6.763355 AGATTTATGCCATAGTCACACCTAG 58.237 40.000 3.14 0.00 0.00 3.02
32 33 5.636903 AGATTTATGCCATAGTCACACCT 57.363 39.130 3.14 0.00 0.00 4.00
34 35 6.925610 TGAAGATTTATGCCATAGTCACAC 57.074 37.500 3.14 0.00 0.00 3.82
35 36 9.440773 GATATGAAGATTTATGCCATAGTCACA 57.559 33.333 0.00 0.00 0.00 3.58
37 38 9.662947 CTGATATGAAGATTTATGCCATAGTCA 57.337 33.333 0.00 0.00 0.00 3.41
40 41 8.734218 AGCTGATATGAAGATTTATGCCATAG 57.266 34.615 0.00 0.00 0.00 2.23
42 43 6.315642 CGAGCTGATATGAAGATTTATGCCAT 59.684 38.462 0.00 0.00 0.00 4.40
44 45 5.641209 ACGAGCTGATATGAAGATTTATGCC 59.359 40.000 0.00 0.00 0.00 4.40
46 47 8.748380 TGTACGAGCTGATATGAAGATTTATG 57.252 34.615 0.00 0.00 0.00 1.90
47 48 9.197694 GTTGTACGAGCTGATATGAAGATTTAT 57.802 33.333 0.00 0.00 0.00 1.40
48 49 8.414003 AGTTGTACGAGCTGATATGAAGATTTA 58.586 33.333 0.00 0.00 0.00 1.40
49 50 7.223582 CAGTTGTACGAGCTGATATGAAGATTT 59.776 37.037 0.00 0.00 32.39 2.17
50 51 6.699204 CAGTTGTACGAGCTGATATGAAGATT 59.301 38.462 0.00 0.00 32.39 2.40
51 52 6.183360 ACAGTTGTACGAGCTGATATGAAGAT 60.183 38.462 15.08 0.00 34.60 2.40
52 53 5.125578 ACAGTTGTACGAGCTGATATGAAGA 59.874 40.000 15.08 0.00 34.60 2.87
53 54 5.230936 CACAGTTGTACGAGCTGATATGAAG 59.769 44.000 15.08 0.00 34.60 3.02
54 55 5.102313 CACAGTTGTACGAGCTGATATGAA 58.898 41.667 15.08 0.00 34.60 2.57
55 56 4.672409 CACAGTTGTACGAGCTGATATGA 58.328 43.478 15.08 0.00 34.60 2.15
56 57 3.243877 GCACAGTTGTACGAGCTGATATG 59.756 47.826 15.08 6.88 34.60 1.78
60 61 0.387565 TGCACAGTTGTACGAGCTGA 59.612 50.000 15.08 0.00 34.60 4.26
61 62 0.508641 GTGCACAGTTGTACGAGCTG 59.491 55.000 13.17 8.86 36.41 4.24
62 63 0.389391 AGTGCACAGTTGTACGAGCT 59.611 50.000 21.04 0.00 42.78 4.09
63 64 0.784778 GAGTGCACAGTTGTACGAGC 59.215 55.000 21.04 0.00 42.78 5.03
64 65 1.053048 CGAGTGCACAGTTGTACGAG 58.947 55.000 21.04 0.00 42.78 4.18
65 66 0.382873 ACGAGTGCACAGTTGTACGA 59.617 50.000 21.04 0.00 42.78 3.43
66 67 0.502695 CACGAGTGCACAGTTGTACG 59.497 55.000 21.04 13.87 42.78 3.67
67 68 1.847818 TCACGAGTGCACAGTTGTAC 58.152 50.000 21.04 0.41 38.56 2.90
68 69 2.159156 ACTTCACGAGTGCACAGTTGTA 60.159 45.455 21.04 5.28 37.17 2.41
69 70 1.290203 CTTCACGAGTGCACAGTTGT 58.710 50.000 21.04 6.37 0.00 3.32
70 71 1.290203 ACTTCACGAGTGCACAGTTG 58.710 50.000 21.04 12.16 37.17 3.16
71 72 1.665679 CAACTTCACGAGTGCACAGTT 59.334 47.619 21.04 15.30 39.00 3.16
72 73 1.290203 CAACTTCACGAGTGCACAGT 58.710 50.000 21.04 15.71 39.00 3.55
73 74 0.583438 CCAACTTCACGAGTGCACAG 59.417 55.000 21.04 15.01 39.00 3.66
74 75 0.176910 TCCAACTTCACGAGTGCACA 59.823 50.000 21.04 0.00 39.00 4.57
75 76 1.295792 TTCCAACTTCACGAGTGCAC 58.704 50.000 9.40 9.40 39.00 4.57
76 77 1.939934 CTTTCCAACTTCACGAGTGCA 59.060 47.619 0.00 0.00 39.00 4.57
77 78 1.940613 ACTTTCCAACTTCACGAGTGC 59.059 47.619 0.00 0.00 39.00 4.40
79 80 3.869065 TGAACTTTCCAACTTCACGAGT 58.131 40.909 0.00 0.00 41.47 4.18
80 81 4.875544 TTGAACTTTCCAACTTCACGAG 57.124 40.909 0.00 0.00 0.00 4.18
82 83 5.168526 TCATTGAACTTTCCAACTTCACG 57.831 39.130 0.00 0.00 0.00 4.35
83 84 6.473455 CACTTCATTGAACTTTCCAACTTCAC 59.527 38.462 0.00 0.00 0.00 3.18
84 85 6.563422 CACTTCATTGAACTTTCCAACTTCA 58.437 36.000 0.00 0.00 0.00 3.02
85 86 5.460091 GCACTTCATTGAACTTTCCAACTTC 59.540 40.000 0.00 0.00 0.00 3.01
86 87 5.351458 GCACTTCATTGAACTTTCCAACTT 58.649 37.500 0.00 0.00 0.00 2.66
89 90 3.629855 TCGCACTTCATTGAACTTTCCAA 59.370 39.130 0.00 0.00 0.00 3.53
90 91 3.210227 TCGCACTTCATTGAACTTTCCA 58.790 40.909 0.00 0.00 0.00 3.53
91 92 3.498397 TCTCGCACTTCATTGAACTTTCC 59.502 43.478 0.00 0.00 0.00 3.13
92 93 4.732285 TCTCGCACTTCATTGAACTTTC 57.268 40.909 0.00 0.00 0.00 2.62
93 94 5.009010 ACATTCTCGCACTTCATTGAACTTT 59.991 36.000 0.00 0.00 0.00 2.66
94 95 4.516698 ACATTCTCGCACTTCATTGAACTT 59.483 37.500 0.00 0.00 0.00 2.66
95 96 4.067896 ACATTCTCGCACTTCATTGAACT 58.932 39.130 0.00 0.00 0.00 3.01
99 100 3.410850 CGAACATTCTCGCACTTCATTG 58.589 45.455 0.00 0.00 31.04 2.82
100 101 2.416547 CCGAACATTCTCGCACTTCATT 59.583 45.455 0.00 0.00 37.51 2.57
101 102 2.002586 CCGAACATTCTCGCACTTCAT 58.997 47.619 0.00 0.00 37.51 2.57
102 103 1.000394 TCCGAACATTCTCGCACTTCA 60.000 47.619 0.00 0.00 37.51 3.02
103 104 1.710013 TCCGAACATTCTCGCACTTC 58.290 50.000 0.00 0.00 37.51 3.01
104 105 2.002586 CATCCGAACATTCTCGCACTT 58.997 47.619 0.00 0.00 37.51 3.16
105 106 1.204704 TCATCCGAACATTCTCGCACT 59.795 47.619 0.00 0.00 37.51 4.40
106 107 1.640428 TCATCCGAACATTCTCGCAC 58.360 50.000 0.00 0.00 37.51 5.34
107 108 2.602257 ATCATCCGAACATTCTCGCA 57.398 45.000 0.00 0.00 37.51 5.10
108 109 4.489810 AGATATCATCCGAACATTCTCGC 58.510 43.478 5.32 0.00 37.51 5.03
109 110 5.164012 GCAAGATATCATCCGAACATTCTCG 60.164 44.000 5.32 0.00 38.58 4.04
110 111 5.121454 GGCAAGATATCATCCGAACATTCTC 59.879 44.000 5.32 0.00 0.00 2.87
113 114 4.978099 AGGCAAGATATCATCCGAACATT 58.022 39.130 5.32 0.00 0.00 2.71
114 115 4.630644 AGGCAAGATATCATCCGAACAT 57.369 40.909 5.32 0.00 0.00 2.71
116 117 4.380531 TCAAGGCAAGATATCATCCGAAC 58.619 43.478 5.32 0.00 0.00 3.95
117 118 4.344968 TCTCAAGGCAAGATATCATCCGAA 59.655 41.667 5.32 0.00 0.00 4.30
118 119 3.897505 TCTCAAGGCAAGATATCATCCGA 59.102 43.478 5.32 0.00 0.00 4.55
120 121 5.802465 TGATCTCAAGGCAAGATATCATCC 58.198 41.667 5.32 2.83 33.64 3.51
121 122 6.183360 GCATGATCTCAAGGCAAGATATCATC 60.183 42.308 5.32 0.00 37.27 2.92
122 123 5.648526 GCATGATCTCAAGGCAAGATATCAT 59.351 40.000 5.32 11.58 38.85 2.45
123 124 5.001874 GCATGATCTCAAGGCAAGATATCA 58.998 41.667 5.32 8.80 34.47 2.15
125 126 4.333690 GGCATGATCTCAAGGCAAGATAT 58.666 43.478 0.00 0.00 39.48 1.63
126 127 3.748083 GGCATGATCTCAAGGCAAGATA 58.252 45.455 0.00 0.00 39.48 1.98
127 128 2.584236 GGCATGATCTCAAGGCAAGAT 58.416 47.619 0.00 0.00 39.48 2.40
128 129 1.744798 CGGCATGATCTCAAGGCAAGA 60.745 52.381 0.00 0.00 39.63 3.02
129 130 0.661552 CGGCATGATCTCAAGGCAAG 59.338 55.000 0.00 0.64 39.63 4.01
130 131 1.378882 GCGGCATGATCTCAAGGCAA 61.379 55.000 0.00 0.00 39.63 4.52
133 134 1.097232 TTTGCGGCATGATCTCAAGG 58.903 50.000 2.28 0.00 0.00 3.61
134 135 2.925578 TTTTGCGGCATGATCTCAAG 57.074 45.000 2.28 0.00 0.00 3.02
135 136 2.754002 TGATTTTGCGGCATGATCTCAA 59.246 40.909 19.94 3.04 0.00 3.02
136 137 2.367486 TGATTTTGCGGCATGATCTCA 58.633 42.857 19.94 10.61 0.00 3.27
138 139 2.159198 GGTTGATTTTGCGGCATGATCT 60.159 45.455 19.94 0.72 0.00 2.75
140 141 1.549620 TGGTTGATTTTGCGGCATGAT 59.450 42.857 2.28 0.31 0.00 2.45
141 142 0.964700 TGGTTGATTTTGCGGCATGA 59.035 45.000 2.28 0.00 0.00 3.07
142 143 1.070038 GTGGTTGATTTTGCGGCATG 58.930 50.000 2.28 0.00 0.00 4.06
143 144 0.037419 GGTGGTTGATTTTGCGGCAT 60.037 50.000 2.28 0.00 0.00 4.40
145 146 1.732683 CGGTGGTTGATTTTGCGGC 60.733 57.895 0.00 0.00 0.00 6.53
146 147 0.386731 GACGGTGGTTGATTTTGCGG 60.387 55.000 0.00 0.00 0.00 5.69
147 148 0.724453 CGACGGTGGTTGATTTTGCG 60.724 55.000 0.00 0.00 0.00 4.85
149 150 2.223386 ACAACGACGGTGGTTGATTTTG 60.223 45.455 33.09 14.05 45.85 2.44
150 151 2.018515 ACAACGACGGTGGTTGATTTT 58.981 42.857 33.09 14.79 45.85 1.82
151 152 1.670791 ACAACGACGGTGGTTGATTT 58.329 45.000 33.09 15.09 45.85 2.17
152 153 2.137523 GTACAACGACGGTGGTTGATT 58.862 47.619 33.09 19.22 45.85 2.57
153 154 1.787012 GTACAACGACGGTGGTTGAT 58.213 50.000 33.09 22.05 45.85 2.57
154 155 0.594540 CGTACAACGACGGTGGTTGA 60.595 55.000 33.09 18.63 46.05 3.18
156 157 0.871163 CACGTACAACGACGGTGGTT 60.871 55.000 18.62 2.46 46.05 3.67
157 158 1.299316 CACGTACAACGACGGTGGT 60.299 57.895 18.62 2.34 46.05 4.16
158 159 2.651137 GCACGTACAACGACGGTGG 61.651 63.158 18.62 1.63 46.05 4.61
159 160 0.385849 TAGCACGTACAACGACGGTG 60.386 55.000 12.24 12.24 46.05 4.94
160 161 0.310543 TTAGCACGTACAACGACGGT 59.689 50.000 6.44 5.22 46.05 4.83
162 163 0.704551 GGTTAGCACGTACAACGACG 59.295 55.000 6.44 0.00 46.05 5.12
163 164 0.704551 CGGTTAGCACGTACAACGAC 59.295 55.000 6.44 0.00 46.05 4.34
164 165 0.590682 TCGGTTAGCACGTACAACGA 59.409 50.000 6.44 0.00 46.05 3.85
166 167 4.168760 AGTATTCGGTTAGCACGTACAAC 58.831 43.478 0.00 0.00 0.00 3.32
167 168 4.414852 GAGTATTCGGTTAGCACGTACAA 58.585 43.478 0.00 0.00 0.00 2.41
168 169 3.181497 GGAGTATTCGGTTAGCACGTACA 60.181 47.826 0.00 0.00 0.00 2.90
169 170 3.366719 GGAGTATTCGGTTAGCACGTAC 58.633 50.000 0.00 0.00 0.00 3.67
170 171 2.358898 GGGAGTATTCGGTTAGCACGTA 59.641 50.000 0.00 0.00 0.00 3.57
171 172 1.135721 GGGAGTATTCGGTTAGCACGT 59.864 52.381 0.00 0.00 0.00 4.49
172 173 1.407979 AGGGAGTATTCGGTTAGCACG 59.592 52.381 0.00 0.00 0.00 5.34
173 174 3.538634 AAGGGAGTATTCGGTTAGCAC 57.461 47.619 0.00 0.00 0.00 4.40
174 175 4.141869 GGTTAAGGGAGTATTCGGTTAGCA 60.142 45.833 0.00 0.00 0.00 3.49
176 177 4.098501 ACGGTTAAGGGAGTATTCGGTTAG 59.901 45.833 0.00 0.00 0.00 2.34
178 179 2.833943 ACGGTTAAGGGAGTATTCGGTT 59.166 45.455 0.00 0.00 0.00 4.44
179 180 2.428530 GACGGTTAAGGGAGTATTCGGT 59.571 50.000 0.00 0.00 0.00 4.69
180 181 2.692041 AGACGGTTAAGGGAGTATTCGG 59.308 50.000 0.00 0.00 0.00 4.30
181 182 4.110482 CAAGACGGTTAAGGGAGTATTCG 58.890 47.826 0.00 0.00 0.00 3.34
182 183 4.161001 TCCAAGACGGTTAAGGGAGTATTC 59.839 45.833 0.00 0.00 35.57 1.75
183 184 4.098894 TCCAAGACGGTTAAGGGAGTATT 58.901 43.478 0.00 0.00 35.57 1.89
184 185 3.716431 TCCAAGACGGTTAAGGGAGTAT 58.284 45.455 0.00 0.00 35.57 2.12
185 186 3.173953 TCCAAGACGGTTAAGGGAGTA 57.826 47.619 0.00 0.00 35.57 2.59
186 187 2.019807 TCCAAGACGGTTAAGGGAGT 57.980 50.000 0.00 0.00 35.57 3.85
188 189 2.829023 AGATCCAAGACGGTTAAGGGA 58.171 47.619 0.00 0.00 35.57 4.20
190 191 3.385111 AGCTAGATCCAAGACGGTTAAGG 59.615 47.826 0.00 0.00 35.57 2.69
192 193 4.464951 TGAAGCTAGATCCAAGACGGTTAA 59.535 41.667 0.00 0.00 35.57 2.01
194 195 2.832129 TGAAGCTAGATCCAAGACGGTT 59.168 45.455 0.00 0.00 35.57 4.44
195 196 2.457598 TGAAGCTAGATCCAAGACGGT 58.542 47.619 0.00 0.00 35.57 4.83
196 197 3.553922 GGATGAAGCTAGATCCAAGACGG 60.554 52.174 15.94 0.00 38.46 4.79
202 203 2.388735 ACGTGGATGAAGCTAGATCCA 58.611 47.619 18.54 18.54 44.84 3.41
203 204 3.126831 CAACGTGGATGAAGCTAGATCC 58.873 50.000 14.52 14.52 38.98 3.36
204 205 3.786635 ACAACGTGGATGAAGCTAGATC 58.213 45.455 0.00 0.00 0.00 2.75
205 206 3.895232 ACAACGTGGATGAAGCTAGAT 57.105 42.857 0.00 0.00 0.00 1.98
206 207 3.244078 ACAACAACGTGGATGAAGCTAGA 60.244 43.478 7.27 0.00 0.00 2.43
209 210 1.967319 ACAACAACGTGGATGAAGCT 58.033 45.000 7.27 0.00 0.00 3.74
210 211 2.806244 AGTACAACAACGTGGATGAAGC 59.194 45.455 7.27 0.00 0.00 3.86
211 212 4.772434 CAAGTACAACAACGTGGATGAAG 58.228 43.478 7.27 0.00 0.00 3.02
213 214 2.546368 GCAAGTACAACAACGTGGATGA 59.454 45.455 7.27 0.00 30.65 2.92
216 217 0.931702 CGCAAGTACAACAACGTGGA 59.068 50.000 0.00 0.00 30.65 4.02
218 219 2.559872 CATCGCAAGTACAACAACGTG 58.440 47.619 0.00 0.00 39.48 4.49
221 222 2.032030 ACAGCATCGCAAGTACAACAAC 60.032 45.455 0.00 0.00 39.48 3.32
225 226 5.621197 AATAAACAGCATCGCAAGTACAA 57.379 34.783 0.00 0.00 39.48 2.41
227 228 4.793216 CCAAATAAACAGCATCGCAAGTAC 59.207 41.667 0.00 0.00 39.48 2.73
228 229 4.697828 TCCAAATAAACAGCATCGCAAGTA 59.302 37.500 0.00 0.00 39.48 2.24
229 230 3.505680 TCCAAATAAACAGCATCGCAAGT 59.494 39.130 0.00 0.00 39.48 3.16
230 231 4.095410 TCCAAATAAACAGCATCGCAAG 57.905 40.909 0.00 0.00 0.00 4.01
231 232 4.717233 ATCCAAATAAACAGCATCGCAA 57.283 36.364 0.00 0.00 0.00 4.85
232 233 4.717233 AATCCAAATAAACAGCATCGCA 57.283 36.364 0.00 0.00 0.00 5.10
234 235 9.139174 AGTTTTAAATCCAAATAAACAGCATCG 57.861 29.630 0.00 0.00 32.58 3.84
237 238 9.823647 TGAAGTTTTAAATCCAAATAAACAGCA 57.176 25.926 0.00 0.00 32.58 4.41
278 279 9.598517 TGCAAACAATACTTTTTGAGAGAAATT 57.401 25.926 0.00 0.00 35.13 1.82
279 280 9.598517 TTGCAAACAATACTTTTTGAGAGAAAT 57.401 25.926 0.00 0.00 35.13 2.17
280 281 8.994429 TTGCAAACAATACTTTTTGAGAGAAA 57.006 26.923 0.00 0.00 35.13 2.52
297 298 5.830900 GCAAAACCGTAATATTGCAAACA 57.169 34.783 1.71 0.00 45.61 2.83
302 303 4.026407 GTCGAGCAAAACCGTAATATTGC 58.974 43.478 0.00 1.31 46.43 3.56
304 305 5.583061 TGATGTCGAGCAAAACCGTAATATT 59.417 36.000 0.00 0.00 0.00 1.28
305 306 5.113383 TGATGTCGAGCAAAACCGTAATAT 58.887 37.500 0.00 0.00 0.00 1.28
306 307 4.496360 TGATGTCGAGCAAAACCGTAATA 58.504 39.130 0.00 0.00 0.00 0.98
307 308 3.331150 TGATGTCGAGCAAAACCGTAAT 58.669 40.909 0.00 0.00 0.00 1.89
308 309 2.756829 TGATGTCGAGCAAAACCGTAA 58.243 42.857 0.00 0.00 0.00 3.18
309 310 2.442212 TGATGTCGAGCAAAACCGTA 57.558 45.000 0.00 0.00 0.00 4.02
310 311 1.808411 ATGATGTCGAGCAAAACCGT 58.192 45.000 0.00 0.00 0.00 4.83
330 331 9.555727 ACCGCTATTTCTTGTTGTAATATATGT 57.444 29.630 0.00 0.00 0.00 2.29
332 333 9.772973 TGACCGCTATTTCTTGTTGTAATATAT 57.227 29.630 0.00 0.00 0.00 0.86
333 334 9.602568 TTGACCGCTATTTCTTGTTGTAATATA 57.397 29.630 0.00 0.00 0.00 0.86
334 335 8.500753 TTGACCGCTATTTCTTGTTGTAATAT 57.499 30.769 0.00 0.00 0.00 1.28
335 336 7.908827 TTGACCGCTATTTCTTGTTGTAATA 57.091 32.000 0.00 0.00 0.00 0.98
336 337 6.811253 TTGACCGCTATTTCTTGTTGTAAT 57.189 33.333 0.00 0.00 0.00 1.89
338 339 6.261381 AGTTTTGACCGCTATTTCTTGTTGTA 59.739 34.615 0.00 0.00 0.00 2.41
339 340 5.067283 AGTTTTGACCGCTATTTCTTGTTGT 59.933 36.000 0.00 0.00 0.00 3.32
341 342 5.767816 AGTTTTGACCGCTATTTCTTGTT 57.232 34.783 0.00 0.00 0.00 2.83
343 344 6.236017 TGTAGTTTTGACCGCTATTTCTTG 57.764 37.500 0.00 0.00 0.00 3.02
344 345 7.448748 AATGTAGTTTTGACCGCTATTTCTT 57.551 32.000 0.00 0.00 0.00 2.52
345 346 7.390718 AGAAATGTAGTTTTGACCGCTATTTCT 59.609 33.333 0.00 0.00 0.00 2.52
347 348 7.448748 AGAAATGTAGTTTTGACCGCTATTT 57.551 32.000 0.00 0.00 0.00 1.40
349 350 8.038944 TCTTAGAAATGTAGTTTTGACCGCTAT 58.961 33.333 0.00 0.00 0.00 2.97
350 351 7.330208 GTCTTAGAAATGTAGTTTTGACCGCTA 59.670 37.037 0.00 0.00 0.00 4.26
352 353 6.304882 GTCTTAGAAATGTAGTTTTGACCGC 58.695 40.000 0.00 0.00 0.00 5.68
409 1118 3.370953 GCCTCTGAATTTGCTCCCTTCTA 60.371 47.826 0.00 0.00 0.00 2.10
412 1121 1.076024 TGCCTCTGAATTTGCTCCCTT 59.924 47.619 0.00 0.00 0.00 3.95
434 1143 7.391833 ACTCTTTTAGCAACCCTTCTATCTTTG 59.608 37.037 0.00 0.00 0.00 2.77
435 1144 7.462590 ACTCTTTTAGCAACCCTTCTATCTTT 58.537 34.615 0.00 0.00 0.00 2.52
472 1181 6.292381 CGGCCGATTGTCTAGAAGAAAAATAG 60.292 42.308 24.07 0.00 0.00 1.73
474 1183 4.332819 CGGCCGATTGTCTAGAAGAAAAAT 59.667 41.667 24.07 0.00 0.00 1.82
475 1184 3.682858 CGGCCGATTGTCTAGAAGAAAAA 59.317 43.478 24.07 0.00 0.00 1.94
480 1189 1.405821 AGACGGCCGATTGTCTAGAAG 59.594 52.381 35.90 0.00 43.36 2.85
503 1212 4.394795 GTGTCGATTTTGACGATGAAAGG 58.605 43.478 0.00 0.00 41.87 3.11
507 1216 1.989864 CCGTGTCGATTTTGACGATGA 59.010 47.619 0.00 0.00 41.87 2.92
525 1336 1.168714 CAAGAGAAGAAAAGGGGCCG 58.831 55.000 0.00 0.00 0.00 6.13
698 4312 1.913419 GGTTGGGTAGATGGGAACTGA 59.087 52.381 0.00 0.00 0.00 3.41
750 4368 2.952978 AGCTCATACGTACCTCAGGAAG 59.047 50.000 0.00 0.00 0.00 3.46
765 4383 2.119009 TCGATGCCGAGAAGCTCAT 58.881 52.632 0.00 0.00 40.30 2.90
808 4427 4.320935 CCAAAATTCGTGGAGGTTAACTGG 60.321 45.833 5.42 0.00 38.54 4.00
817 4436 0.447801 CGCTCCCAAAATTCGTGGAG 59.552 55.000 9.25 10.22 45.83 3.86
904 4530 2.291282 ACAAAGGGGAATTCGCACCATA 60.291 45.455 22.39 0.00 0.00 2.74
926 4552 4.940046 ACAACAGGCATCAATCAGTTCTAG 59.060 41.667 0.00 0.00 0.00 2.43
930 4556 3.256631 GGAACAACAGGCATCAATCAGTT 59.743 43.478 0.00 0.00 0.00 3.16
995 4685 1.425066 GGTCCCCATCATCCATTGCTA 59.575 52.381 0.00 0.00 0.00 3.49
1008 4698 0.252513 TGGAGAAATCGAGGTCCCCA 60.253 55.000 0.00 0.00 0.00 4.96
1032 4722 1.982938 GGTGTCCAGGTACGCCTCT 60.983 63.158 12.16 0.00 44.97 3.69
1095 4791 4.219725 TCTGTGTCGTTGAGGTATTCATCA 59.780 41.667 0.00 0.00 35.27 3.07
1098 4794 3.614150 GCTCTGTGTCGTTGAGGTATTCA 60.614 47.826 0.00 0.00 0.00 2.57
1101 4797 1.893137 TGCTCTGTGTCGTTGAGGTAT 59.107 47.619 0.00 0.00 0.00 2.73
1102 4798 1.000607 GTGCTCTGTGTCGTTGAGGTA 60.001 52.381 0.00 0.00 0.00 3.08
1103 4799 0.249489 GTGCTCTGTGTCGTTGAGGT 60.249 55.000 0.00 0.00 0.00 3.85
1116 4815 2.282040 GTGCAGGCAAGGTGCTCT 60.282 61.111 0.00 0.00 44.28 4.09
1134 4833 0.037590 GGTTGCAGGTGTGGGTATGA 59.962 55.000 0.00 0.00 0.00 2.15
1137 4836 2.840576 GGGTTGCAGGTGTGGGTA 59.159 61.111 0.00 0.00 0.00 3.69
1410 5133 4.400961 GCAGCCTCGGCCTCAAGT 62.401 66.667 0.00 0.00 43.17 3.16
1464 5187 1.146263 GCCAATCTCCCCGTCGATT 59.854 57.895 0.00 0.00 0.00 3.34
1514 5237 2.034053 TCAACACCAGAAACCAAATCGC 59.966 45.455 0.00 0.00 0.00 4.58
1630 5353 0.103572 GCACCATCATCACCCATTGC 59.896 55.000 0.00 0.00 0.00 3.56
1716 5442 3.431207 GGGGCATTGTGAATCCAGATTTG 60.431 47.826 0.00 0.00 0.00 2.32
1776 5502 2.500229 TGCTTTTCAGAACCGGGTAAG 58.500 47.619 6.32 0.00 0.00 2.34
1783 5509 4.590850 ACCTTCATTGCTTTTCAGAACC 57.409 40.909 0.00 0.00 0.00 3.62
1797 5523 8.515414 GCAATAAAAGAAGACACTAACCTTCAT 58.485 33.333 0.00 0.00 40.78 2.57
1847 5575 4.013702 TCGTAGACTGGTCTGGCC 57.986 61.111 12.87 0.00 40.71 5.36
1862 5590 7.775729 AAAATTAGTTCGCAAACTATTGTCG 57.224 32.000 0.00 0.00 45.16 4.35
1887 5615 1.464734 TGAACACGAAAGCCCAACAA 58.535 45.000 0.00 0.00 0.00 2.83
1894 5622 8.682016 GCATATACATAATTTGAACACGAAAGC 58.318 33.333 0.00 0.00 0.00 3.51
1922 5650 7.763985 TCGCAAACAGATATTTTCTCATGAGTA 59.236 33.333 21.92 10.43 29.93 2.59
1937 5665 6.575162 AGGAAAATTAGTTCGCAAACAGAT 57.425 33.333 0.00 0.00 37.88 2.90
1942 5670 5.776173 TCCAAGGAAAATTAGTTCGCAAA 57.224 34.783 0.00 0.00 0.00 3.68
1944 5672 7.639113 ATTATCCAAGGAAAATTAGTTCGCA 57.361 32.000 0.00 0.00 0.00 5.10
2036 6195 5.040635 ACCATGAACAACGACACAAAAATC 58.959 37.500 0.00 0.00 0.00 2.17
2040 6199 3.191581 ACAACCATGAACAACGACACAAA 59.808 39.130 0.00 0.00 0.00 2.83
2041 6200 2.750166 ACAACCATGAACAACGACACAA 59.250 40.909 0.00 0.00 0.00 3.33
2057 6216 9.950680 CAACTTAATAATGATACATGGACAACC 57.049 33.333 0.00 0.00 0.00 3.77
2086 6295 7.850982 CACTTGACACACAAAACTGACTATTAC 59.149 37.037 0.00 0.00 38.08 1.89
2088 6297 6.597672 TCACTTGACACACAAAACTGACTATT 59.402 34.615 0.00 0.00 38.08 1.73
2092 6301 4.678509 TCACTTGACACACAAAACTGAC 57.321 40.909 0.00 0.00 38.08 3.51
2093 6302 6.993786 TTATCACTTGACACACAAAACTGA 57.006 33.333 0.00 0.00 38.08 3.41
2094 6303 7.416817 TCATTATCACTTGACACACAAAACTG 58.583 34.615 0.00 0.00 38.08 3.16
2095 6304 7.566760 TCATTATCACTTGACACACAAAACT 57.433 32.000 0.00 0.00 38.08 2.66
2096 6305 8.531530 GTTTCATTATCACTTGACACACAAAAC 58.468 33.333 0.00 0.00 38.08 2.43
2099 6308 7.416817 CAGTTTCATTATCACTTGACACACAA 58.583 34.615 0.00 0.00 36.97 3.33
2100 6309 6.017192 CCAGTTTCATTATCACTTGACACACA 60.017 38.462 0.00 0.00 0.00 3.72
2104 6313 6.430925 CCTTCCAGTTTCATTATCACTTGACA 59.569 38.462 0.00 0.00 0.00 3.58
2108 6317 5.946377 GGTCCTTCCAGTTTCATTATCACTT 59.054 40.000 0.00 0.00 35.97 3.16
2117 6326 3.559171 GCACATAGGTCCTTCCAGTTTCA 60.559 47.826 0.00 0.00 39.02 2.69
2118 6327 3.010420 GCACATAGGTCCTTCCAGTTTC 58.990 50.000 0.00 0.00 39.02 2.78
2119 6328 2.644798 AGCACATAGGTCCTTCCAGTTT 59.355 45.455 0.00 0.00 39.02 2.66
2120 6329 2.237392 GAGCACATAGGTCCTTCCAGTT 59.763 50.000 0.00 0.00 38.82 3.16
2121 6330 1.834263 GAGCACATAGGTCCTTCCAGT 59.166 52.381 0.00 0.00 38.82 4.00
2122 6331 2.611225 GAGCACATAGGTCCTTCCAG 57.389 55.000 0.00 0.00 38.82 3.86
2129 6338 6.370994 CAGATTATTCATGGAGCACATAGGTC 59.629 42.308 0.00 0.00 43.99 3.85
2130 6339 6.236409 CAGATTATTCATGGAGCACATAGGT 58.764 40.000 0.00 0.00 37.84 3.08
2131 6340 5.123502 GCAGATTATTCATGGAGCACATAGG 59.876 44.000 0.00 0.00 37.84 2.57
2132 6341 5.938710 AGCAGATTATTCATGGAGCACATAG 59.061 40.000 0.00 0.00 37.84 2.23
2133 6342 5.872963 AGCAGATTATTCATGGAGCACATA 58.127 37.500 0.00 0.00 37.84 2.29
2134 6343 4.726583 AGCAGATTATTCATGGAGCACAT 58.273 39.130 0.00 0.00 41.57 3.21
2135 6344 4.132336 GAGCAGATTATTCATGGAGCACA 58.868 43.478 0.00 0.00 0.00 4.57
2136 6345 4.387598 AGAGCAGATTATTCATGGAGCAC 58.612 43.478 0.00 0.00 0.00 4.40
2137 6346 4.701651 AGAGCAGATTATTCATGGAGCA 57.298 40.909 0.00 0.00 0.00 4.26
2138 6347 4.820716 ACAAGAGCAGATTATTCATGGAGC 59.179 41.667 0.00 0.00 0.00 4.70
2139 6348 6.939132 AACAAGAGCAGATTATTCATGGAG 57.061 37.500 0.00 0.00 0.00 3.86
2140 6349 6.660521 ACAAACAAGAGCAGATTATTCATGGA 59.339 34.615 0.00 0.00 0.00 3.41
2141 6350 6.750501 CACAAACAAGAGCAGATTATTCATGG 59.249 38.462 0.00 0.00 0.00 3.66
2142 6351 7.310664 ACACAAACAAGAGCAGATTATTCATG 58.689 34.615 0.00 0.00 0.00 3.07
2143 6352 7.458409 ACACAAACAAGAGCAGATTATTCAT 57.542 32.000 0.00 0.00 0.00 2.57
2144 6353 6.882610 ACACAAACAAGAGCAGATTATTCA 57.117 33.333 0.00 0.00 0.00 2.57
2145 6354 9.846248 ATAAACACAAACAAGAGCAGATTATTC 57.154 29.630 0.00 0.00 0.00 1.75
2146 6355 9.846248 GATAAACACAAACAAGAGCAGATTATT 57.154 29.630 0.00 0.00 0.00 1.40
2147 6356 9.013229 TGATAAACACAAACAAGAGCAGATTAT 57.987 29.630 0.00 0.00 0.00 1.28
2148 6357 8.389779 TGATAAACACAAACAAGAGCAGATTA 57.610 30.769 0.00 0.00 0.00 1.75
2149 6358 7.275888 TGATAAACACAAACAAGAGCAGATT 57.724 32.000 0.00 0.00 0.00 2.40
2150 6359 6.882610 TGATAAACACAAACAAGAGCAGAT 57.117 33.333 0.00 0.00 0.00 2.90
2151 6360 6.691754 TTGATAAACACAAACAAGAGCAGA 57.308 33.333 0.00 0.00 0.00 4.26
2152 6361 7.648908 TGAATTGATAAACACAAACAAGAGCAG 59.351 33.333 0.00 0.00 0.00 4.24
2153 6362 7.487484 TGAATTGATAAACACAAACAAGAGCA 58.513 30.769 0.00 0.00 0.00 4.26
2154 6363 7.358683 GCTGAATTGATAAACACAAACAAGAGC 60.359 37.037 0.00 0.00 0.00 4.09
2155 6364 7.648908 TGCTGAATTGATAAACACAAACAAGAG 59.351 33.333 0.00 0.00 0.00 2.85
2156 6365 7.434897 GTGCTGAATTGATAAACACAAACAAGA 59.565 33.333 0.00 0.00 0.00 3.02
2157 6366 7.306749 GGTGCTGAATTGATAAACACAAACAAG 60.307 37.037 0.00 0.00 0.00 3.16
2158 6367 6.478344 GGTGCTGAATTGATAAACACAAACAA 59.522 34.615 0.00 0.00 0.00 2.83
2159 6368 5.982516 GGTGCTGAATTGATAAACACAAACA 59.017 36.000 0.00 0.00 0.00 2.83
2160 6369 5.982516 TGGTGCTGAATTGATAAACACAAAC 59.017 36.000 0.00 0.00 0.00 2.93
2161 6370 6.154203 TGGTGCTGAATTGATAAACACAAA 57.846 33.333 0.00 0.00 0.00 2.83
2162 6371 5.301551 ACTGGTGCTGAATTGATAAACACAA 59.698 36.000 0.00 0.00 0.00 3.33
2163 6372 4.826733 ACTGGTGCTGAATTGATAAACACA 59.173 37.500 0.00 0.00 0.00 3.72
2164 6373 5.376854 ACTGGTGCTGAATTGATAAACAC 57.623 39.130 0.00 0.00 0.00 3.32
2165 6374 5.301551 ACAACTGGTGCTGAATTGATAAACA 59.698 36.000 0.00 0.00 0.00 2.83
2166 6375 5.772521 ACAACTGGTGCTGAATTGATAAAC 58.227 37.500 0.00 0.00 0.00 2.01
2200 6409 5.178809 GCAACGAAACCAATACTGTAGAAGT 59.821 40.000 0.00 0.00 43.40 3.01
2209 6418 5.107645 GGAATGTTTGCAACGAAACCAATAC 60.108 40.000 0.00 0.00 35.34 1.89
2214 6423 2.794350 CTGGAATGTTTGCAACGAAACC 59.206 45.455 0.00 1.27 35.34 3.27
2218 6435 1.001487 CAGCTGGAATGTTTGCAACGA 60.001 47.619 5.57 0.00 0.00 3.85
2228 6445 3.494378 CAGGTCGCAGCTGGAATG 58.506 61.111 17.12 9.48 39.87 2.67
2241 6458 1.269448 CGCAAAATACCAAGCACAGGT 59.731 47.619 0.40 0.40 43.14 4.00
2255 6474 8.637281 TCTTCATATAAATAGACGACGCAAAA 57.363 30.769 0.00 0.00 0.00 2.44
2329 6548 0.323360 AATATGCAACGGGCCACACT 60.323 50.000 4.39 0.00 43.89 3.55
2338 6557 3.243068 GGCCCAGTCTAAAATATGCAACG 60.243 47.826 0.00 0.00 0.00 4.10
2344 6563 2.785857 AGGCAGGCCCAGTCTAAAATAT 59.214 45.455 6.70 0.00 36.58 1.28
2347 6566 0.777446 AAGGCAGGCCCAGTCTAAAA 59.223 50.000 6.70 0.00 36.58 1.52
2393 6613 6.557110 TGTTCACAACTAAAACAGCCTAAAC 58.443 36.000 0.00 0.00 0.00 2.01
2397 6617 5.591099 CAATGTTCACAACTAAAACAGCCT 58.409 37.500 0.00 0.00 36.44 4.58
2448 6668 0.382873 CAGCAGCAACAAGACAGCAA 59.617 50.000 0.00 0.00 0.00 3.91
2465 6685 4.318332 TGGAAACAGACAAGATACAGCAG 58.682 43.478 0.00 0.00 35.01 4.24
2466 6686 4.350368 TGGAAACAGACAAGATACAGCA 57.650 40.909 0.00 0.00 35.01 4.41
2483 6703 6.691255 ATGTGGGTTACTAGTTTACTGGAA 57.309 37.500 0.00 0.00 0.00 3.53
2493 6713 5.116882 GGCAGTAGAAATGTGGGTTACTAG 58.883 45.833 0.00 0.00 0.00 2.57
2504 6724 5.064441 CCTGAAAAAGGGCAGTAGAAATG 57.936 43.478 0.00 0.00 43.15 2.32
2537 6757 3.452474 CTGCCTAAGGAGAAGATTCACG 58.548 50.000 0.00 0.00 0.00 4.35
2553 6773 1.600916 GAACCGAAAGTGCCTGCCT 60.601 57.895 0.00 0.00 0.00 4.75
2576 6796 6.313519 AGCAATTTATACAGTCTTCCCTCA 57.686 37.500 0.00 0.00 0.00 3.86
2609 6829 1.298788 GTTTGAACCAACACGGCCG 60.299 57.895 26.86 26.86 39.03 6.13
2612 6832 1.267832 CGACAGTTTGAACCAACACGG 60.268 52.381 0.00 0.00 42.50 4.94
2624 6844 1.017177 ACACACACGCACGACAGTTT 61.017 50.000 0.00 0.00 0.00 2.66
2633 6853 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
2634 6854 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
2635 6855 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
2636 6856 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2637 6857 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2638 6858 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2639 6859 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2640 6860 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2641 6861 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2642 6862 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2643 6863 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2644 6864 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
2645 6865 2.106477 ATCACACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
2646 6866 2.677836 AGAATCACACACACACACACAC 59.322 45.455 0.00 0.00 0.00 3.82
2647 6867 2.677337 CAGAATCACACACACACACACA 59.323 45.455 0.00 0.00 0.00 3.72
2648 6868 2.677836 ACAGAATCACACACACACACAC 59.322 45.455 0.00 0.00 0.00 3.82
2649 6869 2.935849 GACAGAATCACACACACACACA 59.064 45.455 0.00 0.00 0.00 3.72
2650 6870 2.033747 CGACAGAATCACACACACACAC 60.034 50.000 0.00 0.00 0.00 3.82
2651 6871 2.200899 CGACAGAATCACACACACACA 58.799 47.619 0.00 0.00 0.00 3.72
2652 6872 1.070577 GCGACAGAATCACACACACAC 60.071 52.381 0.00 0.00 0.00 3.82
2653 6873 1.217001 GCGACAGAATCACACACACA 58.783 50.000 0.00 0.00 0.00 3.72
2654 6874 0.512952 GGCGACAGAATCACACACAC 59.487 55.000 0.00 0.00 0.00 3.82
2655 6875 0.105778 TGGCGACAGAATCACACACA 59.894 50.000 0.00 0.00 35.01 3.72
2656 6876 1.225855 TTGGCGACAGAATCACACAC 58.774 50.000 0.00 0.00 44.54 3.82
2657 6877 1.805943 CATTGGCGACAGAATCACACA 59.194 47.619 0.00 0.00 44.54 3.72
2658 6878 2.076100 TCATTGGCGACAGAATCACAC 58.924 47.619 0.00 0.00 44.54 3.82
2659 6879 2.470983 TCATTGGCGACAGAATCACA 57.529 45.000 0.00 0.00 44.54 3.58
2660 6880 2.540361 GCATCATTGGCGACAGAATCAC 60.540 50.000 0.00 0.00 44.54 3.06
2661 6881 1.672363 GCATCATTGGCGACAGAATCA 59.328 47.619 0.00 0.00 44.54 2.57
2662 6882 1.945394 AGCATCATTGGCGACAGAATC 59.055 47.619 0.00 0.00 44.54 2.52
2663 6883 2.048444 AGCATCATTGGCGACAGAAT 57.952 45.000 0.00 0.00 44.54 2.40
2664 6884 1.739466 GAAGCATCATTGGCGACAGAA 59.261 47.619 0.00 0.00 44.54 3.02
2665 6885 1.065926 AGAAGCATCATTGGCGACAGA 60.066 47.619 0.00 0.00 44.54 3.41
2666 6886 1.376543 AGAAGCATCATTGGCGACAG 58.623 50.000 0.00 0.00 44.54 3.51
2667 6887 1.825090 AAGAAGCATCATTGGCGACA 58.175 45.000 0.00 0.00 39.83 4.35
2668 6888 2.162208 TCAAAGAAGCATCATTGGCGAC 59.838 45.455 7.02 0.00 35.50 5.19
2669 6889 2.162208 GTCAAAGAAGCATCATTGGCGA 59.838 45.455 7.02 0.00 35.50 5.54
2670 6890 2.523015 GTCAAAGAAGCATCATTGGCG 58.477 47.619 7.02 0.00 35.50 5.69
2671 6891 2.162208 TCGTCAAAGAAGCATCATTGGC 59.838 45.455 7.02 4.42 35.95 4.52
2687 6907 2.125552 CGCCTCAAGCCATCGTCA 60.126 61.111 0.00 0.00 38.78 4.35
2692 6912 1.303561 TTTCAGCGCCTCAAGCCAT 60.304 52.632 2.29 0.00 38.78 4.40
2723 6943 2.459644 TGAAGGAGAATGCCCAAATGG 58.540 47.619 0.00 0.00 37.09 3.16
2724 6944 4.748277 ATTGAAGGAGAATGCCCAAATG 57.252 40.909 0.00 0.00 0.00 2.32
2725 6945 5.767277 AAATTGAAGGAGAATGCCCAAAT 57.233 34.783 0.00 0.00 0.00 2.32
2726 6946 5.512921 GGAAAATTGAAGGAGAATGCCCAAA 60.513 40.000 0.00 0.00 0.00 3.28
2727 6947 4.020307 GGAAAATTGAAGGAGAATGCCCAA 60.020 41.667 0.00 0.00 0.00 4.12
2728 6948 3.515104 GGAAAATTGAAGGAGAATGCCCA 59.485 43.478 0.00 0.00 0.00 5.36
2729 6949 3.118629 GGGAAAATTGAAGGAGAATGCCC 60.119 47.826 0.00 0.00 0.00 5.36
2743 6968 1.937191 AATGGCGACCAGGGAAAATT 58.063 45.000 4.90 0.00 36.75 1.82
2744 6969 1.824852 GAAATGGCGACCAGGGAAAAT 59.175 47.619 4.90 0.00 36.75 1.82
2756 6981 3.613737 CCATAGCAAAACTTGAAATGGCG 59.386 43.478 7.21 0.00 37.53 5.69
2765 6990 4.385825 TGTCGAACTCCATAGCAAAACTT 58.614 39.130 0.00 0.00 0.00 2.66
2775 7000 1.813513 CAAAGGCTGTCGAACTCCAT 58.186 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.