Multiple sequence alignment - TraesCS5D01G024000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G024000 chr5D 100.000 2880 0 0 1 2880 20209183 20212062 0.000000e+00 5319.0
1 TraesCS5D01G024000 chr5D 92.188 192 14 1 1 191 560391652 560391461 1.320000e-68 270.0
2 TraesCS5D01G024000 chr5D 90.306 196 17 2 1 194 22452131 22452326 3.680000e-64 255.0
3 TraesCS5D01G024000 chr1B 89.605 1039 60 9 1733 2759 81746861 81747863 0.000000e+00 1277.0
4 TraesCS5D01G024000 chr1B 80.393 1678 220 57 368 2019 82734666 82736260 0.000000e+00 1175.0
5 TraesCS5D01G024000 chr1B 80.430 1676 215 58 368 2019 89521236 89522822 0.000000e+00 1173.0
6 TraesCS5D01G024000 chr1B 83.333 1140 124 26 323 1446 81745465 81746554 0.000000e+00 992.0
7 TraesCS5D01G024000 chr1B 81.818 1056 126 40 982 2020 84381659 84380653 0.000000e+00 826.0
8 TraesCS5D01G024000 chr1B 83.919 740 82 19 2029 2754 82736369 82737085 0.000000e+00 673.0
9 TraesCS5D01G024000 chr1B 83.553 608 66 17 2156 2754 89523095 89523677 3.270000e-149 538.0
10 TraesCS5D01G024000 chr1B 83.168 606 68 18 2159 2754 84377092 84376511 9.140000e-145 523.0
11 TraesCS5D01G024000 chr1B 92.282 298 23 0 1443 1740 81746521 81746818 9.540000e-115 424.0
12 TraesCS5D01G024000 chr1B 81.432 447 63 16 509 950 84383496 84383065 5.910000e-92 348.0
13 TraesCS5D01G024000 chr1B 84.892 139 7 5 193 321 21841018 21841152 8.380000e-26 128.0
14 TraesCS5D01G024000 chr1B 93.421 76 5 0 1795 1870 81750970 81751045 2.350000e-21 113.0
15 TraesCS5D01G024000 chr3A 82.231 484 64 17 2130 2600 15474255 15474729 5.780000e-107 398.0
16 TraesCS5D01G024000 chr3A 95.402 87 3 1 2602 2688 15474789 15474874 1.390000e-28 137.0
17 TraesCS5D01G024000 chr1D 93.264 193 12 1 1 192 10068010 10068202 1.690000e-72 283.0
18 TraesCS5D01G024000 chr1D 93.103 58 4 0 264 321 7509790 7509847 5.110000e-13 86.1
19 TraesCS5D01G024000 chr3D 93.264 193 10 3 1 191 576792992 576793183 6.080000e-72 281.0
20 TraesCS5D01G024000 chr3D 82.707 266 34 10 2130 2386 5729356 5729094 2.890000e-55 226.0
21 TraesCS5D01G024000 chr3D 98.347 121 2 0 2760 2880 31969384 31969264 2.250000e-51 213.0
22 TraesCS5D01G024000 chr3D 97.561 123 3 0 2758 2880 606630862 606630740 8.080000e-51 211.0
23 TraesCS5D01G024000 chr4D 91.623 191 15 1 1 190 509313283 509313473 2.200000e-66 263.0
24 TraesCS5D01G024000 chr4B 91.192 193 16 1 1 192 673432475 673432283 7.920000e-66 261.0
25 TraesCS5D01G024000 chrUn 90.674 193 16 2 1 192 70554551 70554360 3.680000e-64 255.0
26 TraesCS5D01G024000 chrUn 90.256 195 18 1 1 194 197768120 197768314 1.320000e-63 254.0
27 TraesCS5D01G024000 chrUn 96.850 127 3 1 2755 2880 27489039 27488913 8.080000e-51 211.0
28 TraesCS5D01G024000 chr2D 90.256 195 18 1 1 194 394181669 394181475 1.320000e-63 254.0
29 TraesCS5D01G024000 chr2D 98.361 122 2 0 2759 2880 12328758 12328879 6.250000e-52 215.0
30 TraesCS5D01G024000 chr2D 98.347 121 2 0 2760 2880 462490281 462490161 2.250000e-51 213.0
31 TraesCS5D01G024000 chr2D 85.612 139 6 5 193 321 307529905 307529771 1.800000e-27 134.0
32 TraesCS5D01G024000 chr2D 84.173 139 8 5 193 321 307519590 307519456 3.900000e-24 122.0
33 TraesCS5D01G024000 chr7D 98.347 121 2 0 2760 2880 3431356 3431476 2.250000e-51 213.0
34 TraesCS5D01G024000 chr7D 97.541 122 3 0 2759 2880 156794230 156794109 2.910000e-50 209.0
35 TraesCS5D01G024000 chr7D 97.521 121 3 0 2760 2880 553982809 553982929 1.050000e-49 207.0
36 TraesCS5D01G024000 chr6D 97.581 124 3 0 2757 2880 316831048 316831171 2.250000e-51 213.0
37 TraesCS5D01G024000 chr2B 84.173 139 8 5 193 321 23666893 23667027 3.900000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G024000 chr5D 20209183 20212062 2879 False 5319.000000 5319 100.000000 1 2880 1 chr5D.!!$F1 2879
1 TraesCS5D01G024000 chr1B 82734666 82737085 2419 False 924.000000 1175 82.156000 368 2754 2 chr1B.!!$F3 2386
2 TraesCS5D01G024000 chr1B 89521236 89523677 2441 False 855.500000 1173 81.991500 368 2754 2 chr1B.!!$F4 2386
3 TraesCS5D01G024000 chr1B 81745465 81751045 5580 False 701.500000 1277 89.660250 323 2759 4 chr1B.!!$F2 2436
4 TraesCS5D01G024000 chr1B 84376511 84383496 6985 True 565.666667 826 82.139333 509 2754 3 chr1B.!!$R1 2245
5 TraesCS5D01G024000 chr3A 15474255 15474874 619 False 267.500000 398 88.816500 2130 2688 2 chr3A.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.035820 TGGAACCGGCACTAATGGAC 60.036 55.0 0.0 0.0 0.00 4.02 F
269 270 0.173708 GAGTCGGTCAAGGCACCTAG 59.826 60.0 0.0 0.0 33.77 3.02 F
1359 2803 0.035056 CAAGAGGAAGGCCGTGGATT 60.035 55.0 0.0 0.0 39.96 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 2685 0.108329 AGGTTATTGTCGTCGGGCAG 60.108 55.000 0.00 0.00 0.00 4.85 R
1441 2885 1.066573 CAGCGACCTCAGGTTGAATCT 60.067 52.381 16.28 0.00 39.36 2.40 R
2783 7781 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.782632 GCCCCTGCCTCTTTAGTAC 57.217 57.895 0.00 0.00 0.00 2.73
32 33 0.180642 GCCCCTGCCTCTTTAGTACC 59.819 60.000 0.00 0.00 0.00 3.34
33 34 0.464452 CCCCTGCCTCTTTAGTACCG 59.536 60.000 0.00 0.00 0.00 4.02
34 35 0.464452 CCCTGCCTCTTTAGTACCGG 59.536 60.000 0.00 0.00 0.00 5.28
35 36 1.192428 CCTGCCTCTTTAGTACCGGT 58.808 55.000 13.98 13.98 0.00 5.28
36 37 1.553704 CCTGCCTCTTTAGTACCGGTT 59.446 52.381 15.04 0.00 0.00 4.44
37 38 2.418334 CCTGCCTCTTTAGTACCGGTTC 60.418 54.545 15.04 8.12 0.00 3.62
38 39 2.232941 CTGCCTCTTTAGTACCGGTTCA 59.767 50.000 15.04 0.00 0.00 3.18
39 40 2.835764 TGCCTCTTTAGTACCGGTTCAT 59.164 45.455 15.04 0.95 0.00 2.57
40 41 3.195661 GCCTCTTTAGTACCGGTTCATG 58.804 50.000 15.04 0.00 0.00 3.07
41 42 3.793559 CCTCTTTAGTACCGGTTCATGG 58.206 50.000 15.04 0.88 0.00 3.66
42 43 3.195661 CTCTTTAGTACCGGTTCATGGC 58.804 50.000 15.04 0.00 0.00 4.40
43 44 1.931172 CTTTAGTACCGGTTCATGGCG 59.069 52.381 15.04 0.00 0.00 5.69
44 45 0.896923 TTAGTACCGGTTCATGGCGT 59.103 50.000 15.04 0.00 0.00 5.68
45 46 0.173935 TAGTACCGGTTCATGGCGTG 59.826 55.000 15.04 0.00 0.00 5.34
46 47 1.079681 GTACCGGTTCATGGCGTGA 60.080 57.895 15.04 5.03 34.25 4.35
47 48 0.671163 GTACCGGTTCATGGCGTGAA 60.671 55.000 15.04 17.86 44.36 3.18
52 53 2.428187 TTCATGGCGTGAACCGGT 59.572 55.556 17.86 0.00 41.79 5.28
53 54 1.672320 TTCATGGCGTGAACCGGTA 59.328 52.632 17.86 0.00 41.79 4.02
54 55 0.250793 TTCATGGCGTGAACCGGTAT 59.749 50.000 17.86 0.00 41.79 2.73
55 56 1.112950 TCATGGCGTGAACCGGTATA 58.887 50.000 8.00 0.00 36.94 1.47
56 57 1.481363 TCATGGCGTGAACCGGTATAA 59.519 47.619 8.00 0.00 36.94 0.98
57 58 2.093606 TCATGGCGTGAACCGGTATAAA 60.094 45.455 8.00 0.00 36.94 1.40
58 59 2.012937 TGGCGTGAACCGGTATAAAG 57.987 50.000 8.00 0.00 36.94 1.85
59 60 1.292992 GGCGTGAACCGGTATAAAGG 58.707 55.000 8.00 0.50 36.94 3.11
60 61 1.405933 GGCGTGAACCGGTATAAAGGT 60.406 52.381 8.00 0.00 43.68 3.50
68 69 3.253230 ACCGGTATAAAGGTTCGTTTCG 58.747 45.455 4.49 0.00 37.49 3.46
69 70 3.056891 ACCGGTATAAAGGTTCGTTTCGA 60.057 43.478 4.49 0.00 37.49 3.71
70 71 3.925913 CCGGTATAAAGGTTCGTTTCGAA 59.074 43.478 0.00 0.00 43.75 3.71
80 81 3.634568 TTCGTTTCGAACCGGTACTAA 57.365 42.857 15.30 0.00 41.05 2.24
81 82 3.634568 TCGTTTCGAACCGGTACTAAA 57.365 42.857 15.30 5.74 31.06 1.85
82 83 3.564511 TCGTTTCGAACCGGTACTAAAG 58.435 45.455 15.30 2.92 31.06 1.85
83 84 3.252215 TCGTTTCGAACCGGTACTAAAGA 59.748 43.478 15.30 5.39 31.06 2.52
84 85 4.082787 TCGTTTCGAACCGGTACTAAAGAT 60.083 41.667 15.30 0.00 31.06 2.40
85 86 4.263911 CGTTTCGAACCGGTACTAAAGATC 59.736 45.833 8.00 0.00 0.00 2.75
86 87 5.405797 GTTTCGAACCGGTACTAAAGATCT 58.594 41.667 8.00 0.00 0.00 2.75
87 88 4.889832 TCGAACCGGTACTAAAGATCTC 57.110 45.455 8.00 0.00 0.00 2.75
88 89 3.629398 TCGAACCGGTACTAAAGATCTCC 59.371 47.826 8.00 0.00 0.00 3.71
89 90 3.631227 CGAACCGGTACTAAAGATCTCCT 59.369 47.826 8.00 0.00 0.00 3.69
90 91 4.261114 CGAACCGGTACTAAAGATCTCCTC 60.261 50.000 8.00 0.00 0.00 3.71
91 92 3.564264 ACCGGTACTAAAGATCTCCTCC 58.436 50.000 4.49 0.00 0.00 4.30
92 93 2.892215 CCGGTACTAAAGATCTCCTCCC 59.108 54.545 0.00 0.00 0.00 4.30
93 94 2.553172 CGGTACTAAAGATCTCCTCCCG 59.447 54.545 0.00 0.00 0.00 5.14
94 95 2.296752 GGTACTAAAGATCTCCTCCCGC 59.703 54.545 0.00 0.00 0.00 6.13
95 96 1.415200 ACTAAAGATCTCCTCCCGCC 58.585 55.000 0.00 0.00 0.00 6.13
96 97 1.062810 ACTAAAGATCTCCTCCCGCCT 60.063 52.381 0.00 0.00 0.00 5.52
97 98 2.177233 ACTAAAGATCTCCTCCCGCCTA 59.823 50.000 0.00 0.00 0.00 3.93
98 99 1.710816 AAAGATCTCCTCCCGCCTAG 58.289 55.000 0.00 0.00 0.00 3.02
99 100 0.830023 AAGATCTCCTCCCGCCTAGC 60.830 60.000 0.00 0.00 0.00 3.42
100 101 2.203714 ATCTCCTCCCGCCTAGCC 60.204 66.667 0.00 0.00 0.00 3.93
101 102 4.896829 TCTCCTCCCGCCTAGCCG 62.897 72.222 0.00 0.00 0.00 5.52
103 104 4.772231 TCCTCCCGCCTAGCCGTT 62.772 66.667 0.00 0.00 0.00 4.44
104 105 4.530857 CCTCCCGCCTAGCCGTTG 62.531 72.222 0.00 0.00 0.00 4.10
105 106 4.530857 CTCCCGCCTAGCCGTTGG 62.531 72.222 0.00 0.00 0.00 3.77
107 108 4.090588 CCCGCCTAGCCGTTGGAA 62.091 66.667 0.00 0.00 0.00 3.53
108 109 2.818274 CCGCCTAGCCGTTGGAAC 60.818 66.667 0.00 0.00 0.00 3.62
109 110 2.818274 CGCCTAGCCGTTGGAACC 60.818 66.667 0.00 0.00 0.00 3.62
110 111 2.818274 GCCTAGCCGTTGGAACCG 60.818 66.667 0.00 0.00 0.00 4.44
116 117 2.344500 CCGTTGGAACCGGCACTA 59.656 61.111 0.00 0.00 38.85 2.74
117 118 1.301874 CCGTTGGAACCGGCACTAA 60.302 57.895 0.00 0.00 38.85 2.24
118 119 0.675522 CCGTTGGAACCGGCACTAAT 60.676 55.000 0.00 0.00 38.85 1.73
119 120 0.446222 CGTTGGAACCGGCACTAATG 59.554 55.000 0.00 1.62 0.00 1.90
120 121 0.808755 GTTGGAACCGGCACTAATGG 59.191 55.000 0.00 0.00 0.00 3.16
121 122 0.693622 TTGGAACCGGCACTAATGGA 59.306 50.000 0.00 0.00 0.00 3.41
122 123 0.035820 TGGAACCGGCACTAATGGAC 60.036 55.000 0.00 0.00 0.00 4.02
123 124 0.035820 GGAACCGGCACTAATGGACA 60.036 55.000 0.00 0.00 0.00 4.02
124 125 1.084289 GAACCGGCACTAATGGACAC 58.916 55.000 0.00 0.00 0.00 3.67
125 126 0.398696 AACCGGCACTAATGGACACA 59.601 50.000 0.00 0.00 0.00 3.72
126 127 0.618458 ACCGGCACTAATGGACACAT 59.382 50.000 0.00 0.00 39.54 3.21
128 129 2.237643 ACCGGCACTAATGGACACATTA 59.762 45.455 0.00 0.00 45.17 1.90
139 140 4.615901 CACATTAGTGCCGGCTCA 57.384 55.556 29.70 9.72 39.21 4.26
140 141 3.085208 CACATTAGTGCCGGCTCAT 57.915 52.632 29.70 15.76 39.21 2.90
141 142 2.238942 CACATTAGTGCCGGCTCATA 57.761 50.000 29.70 16.06 39.21 2.15
142 143 2.771089 CACATTAGTGCCGGCTCATAT 58.229 47.619 29.70 17.62 39.21 1.78
143 144 3.141398 CACATTAGTGCCGGCTCATATT 58.859 45.455 29.70 10.68 39.21 1.28
144 145 3.565482 CACATTAGTGCCGGCTCATATTT 59.435 43.478 29.70 10.27 39.21 1.40
145 146 3.815401 ACATTAGTGCCGGCTCATATTTC 59.185 43.478 29.70 7.57 0.00 2.17
146 147 3.552132 TTAGTGCCGGCTCATATTTCA 57.448 42.857 29.70 0.00 0.00 2.69
147 148 2.418368 AGTGCCGGCTCATATTTCAA 57.582 45.000 29.70 0.00 0.00 2.69
148 149 2.017049 AGTGCCGGCTCATATTTCAAC 58.983 47.619 29.70 13.21 0.00 3.18
149 150 2.017049 GTGCCGGCTCATATTTCAACT 58.983 47.619 29.70 0.00 0.00 3.16
150 151 2.423538 GTGCCGGCTCATATTTCAACTT 59.576 45.455 29.70 0.00 0.00 2.66
151 152 2.423185 TGCCGGCTCATATTTCAACTTG 59.577 45.455 29.70 0.00 0.00 3.16
152 153 2.223572 GCCGGCTCATATTTCAACTTGG 60.224 50.000 22.15 0.00 0.00 3.61
153 154 3.278574 CCGGCTCATATTTCAACTTGGA 58.721 45.455 0.00 0.00 0.00 3.53
154 155 3.065371 CCGGCTCATATTTCAACTTGGAC 59.935 47.826 0.00 0.00 0.00 4.02
155 156 3.941483 CGGCTCATATTTCAACTTGGACT 59.059 43.478 0.00 0.00 0.00 3.85
156 157 5.116180 CGGCTCATATTTCAACTTGGACTA 58.884 41.667 0.00 0.00 0.00 2.59
157 158 5.584649 CGGCTCATATTTCAACTTGGACTAA 59.415 40.000 0.00 0.00 0.00 2.24
158 159 6.260936 CGGCTCATATTTCAACTTGGACTAAT 59.739 38.462 0.00 0.00 0.00 1.73
159 160 7.420800 GGCTCATATTTCAACTTGGACTAATG 58.579 38.462 0.00 0.00 0.00 1.90
160 161 7.067494 GGCTCATATTTCAACTTGGACTAATGT 59.933 37.037 0.00 0.00 0.00 2.71
161 162 9.109393 GCTCATATTTCAACTTGGACTAATGTA 57.891 33.333 0.00 0.00 0.00 2.29
163 164 9.109393 TCATATTTCAACTTGGACTAATGTAGC 57.891 33.333 0.00 0.00 0.00 3.58
164 165 9.113838 CATATTTCAACTTGGACTAATGTAGCT 57.886 33.333 0.00 0.00 0.00 3.32
165 166 7.617041 ATTTCAACTTGGACTAATGTAGCTC 57.383 36.000 0.00 0.00 0.00 4.09
166 167 5.738619 TCAACTTGGACTAATGTAGCTCA 57.261 39.130 0.00 0.00 0.00 4.26
167 168 5.479306 TCAACTTGGACTAATGTAGCTCAC 58.521 41.667 0.00 0.00 0.00 3.51
168 169 5.011635 TCAACTTGGACTAATGTAGCTCACA 59.988 40.000 0.00 0.00 42.69 3.58
177 178 2.093306 TGTAGCTCACATTTGACCCG 57.907 50.000 0.00 0.00 30.04 5.28
178 179 1.346395 TGTAGCTCACATTTGACCCGT 59.654 47.619 0.00 0.00 30.04 5.28
179 180 2.224426 TGTAGCTCACATTTGACCCGTT 60.224 45.455 0.00 0.00 30.04 4.44
180 181 1.981256 AGCTCACATTTGACCCGTTT 58.019 45.000 0.00 0.00 0.00 3.60
181 182 2.306847 AGCTCACATTTGACCCGTTTT 58.693 42.857 0.00 0.00 0.00 2.43
182 183 2.293399 AGCTCACATTTGACCCGTTTTC 59.707 45.455 0.00 0.00 0.00 2.29
183 184 2.293399 GCTCACATTTGACCCGTTTTCT 59.707 45.455 0.00 0.00 0.00 2.52
184 185 3.500680 GCTCACATTTGACCCGTTTTCTA 59.499 43.478 0.00 0.00 0.00 2.10
185 186 4.612939 GCTCACATTTGACCCGTTTTCTAC 60.613 45.833 0.00 0.00 0.00 2.59
186 187 4.710324 TCACATTTGACCCGTTTTCTACT 58.290 39.130 0.00 0.00 0.00 2.57
187 188 5.856156 TCACATTTGACCCGTTTTCTACTA 58.144 37.500 0.00 0.00 0.00 1.82
188 189 5.929992 TCACATTTGACCCGTTTTCTACTAG 59.070 40.000 0.00 0.00 0.00 2.57
189 190 5.699458 CACATTTGACCCGTTTTCTACTAGT 59.301 40.000 0.00 0.00 0.00 2.57
190 191 5.699458 ACATTTGACCCGTTTTCTACTAGTG 59.301 40.000 5.39 0.00 0.00 2.74
191 192 5.534207 TTTGACCCGTTTTCTACTAGTGA 57.466 39.130 5.39 0.00 0.00 3.41
192 193 4.510038 TGACCCGTTTTCTACTAGTGAC 57.490 45.455 5.39 0.00 0.00 3.67
193 194 3.256631 TGACCCGTTTTCTACTAGTGACC 59.743 47.826 5.39 0.00 0.00 4.02
194 195 3.233507 ACCCGTTTTCTACTAGTGACCA 58.766 45.455 5.39 0.00 0.00 4.02
195 196 3.006217 ACCCGTTTTCTACTAGTGACCAC 59.994 47.826 5.39 0.00 0.00 4.16
196 197 3.257624 CCCGTTTTCTACTAGTGACCACT 59.742 47.826 5.39 7.86 45.02 4.00
197 198 4.483311 CCGTTTTCTACTAGTGACCACTC 58.517 47.826 5.39 0.00 42.54 3.51
198 199 4.483311 CGTTTTCTACTAGTGACCACTCC 58.517 47.826 5.39 0.00 42.54 3.85
199 200 4.022589 CGTTTTCTACTAGTGACCACTCCA 60.023 45.833 5.39 0.00 42.54 3.86
200 201 5.228665 GTTTTCTACTAGTGACCACTCCAC 58.771 45.833 5.39 0.00 42.54 4.02
201 202 3.801307 TCTACTAGTGACCACTCCACA 57.199 47.619 5.39 0.00 42.54 4.17
202 203 3.687125 TCTACTAGTGACCACTCCACAG 58.313 50.000 5.39 1.38 42.54 3.66
203 204 2.677542 ACTAGTGACCACTCCACAGA 57.322 50.000 5.87 0.00 42.54 3.41
204 205 2.520069 ACTAGTGACCACTCCACAGAG 58.480 52.381 5.87 0.33 46.36 3.35
205 206 1.203523 CTAGTGACCACTCCACAGAGC 59.796 57.143 5.87 0.00 44.65 4.09
206 207 0.470833 AGTGACCACTCCACAGAGCT 60.471 55.000 0.00 0.00 44.65 4.09
207 208 1.203063 AGTGACCACTCCACAGAGCTA 60.203 52.381 0.00 0.00 44.65 3.32
208 209 1.203523 GTGACCACTCCACAGAGCTAG 59.796 57.143 0.00 0.00 44.65 3.42
209 210 0.174617 GACCACTCCACAGAGCTAGC 59.825 60.000 6.62 6.62 44.65 3.42
210 211 0.252012 ACCACTCCACAGAGCTAGCT 60.252 55.000 19.45 19.45 44.65 3.32
211 212 1.006043 ACCACTCCACAGAGCTAGCTA 59.994 52.381 19.38 0.00 44.65 3.32
212 213 1.680735 CCACTCCACAGAGCTAGCTAG 59.319 57.143 19.38 16.84 44.65 3.42
224 225 1.588861 GCTAGCTAGCTAACAACGTGC 59.411 52.381 33.71 17.82 45.62 5.34
225 226 2.876091 CTAGCTAGCTAACAACGTGCA 58.124 47.619 24.20 1.14 0.00 4.57
226 227 2.386661 AGCTAGCTAACAACGTGCAT 57.613 45.000 17.69 0.00 0.00 3.96
227 228 2.699954 AGCTAGCTAACAACGTGCATT 58.300 42.857 17.69 0.00 0.00 3.56
228 229 2.673368 AGCTAGCTAACAACGTGCATTC 59.327 45.455 17.69 0.00 0.00 2.67
229 230 2.415168 GCTAGCTAACAACGTGCATTCA 59.585 45.455 7.70 0.00 0.00 2.57
230 231 3.063997 GCTAGCTAACAACGTGCATTCAT 59.936 43.478 7.70 0.00 0.00 2.57
231 232 3.476295 AGCTAACAACGTGCATTCATG 57.524 42.857 0.00 0.00 35.37 3.07
232 233 2.813754 AGCTAACAACGTGCATTCATGT 59.186 40.909 0.00 0.00 43.88 3.21
233 234 4.000325 AGCTAACAACGTGCATTCATGTA 59.000 39.130 0.00 0.00 41.33 2.29
234 235 4.454161 AGCTAACAACGTGCATTCATGTAA 59.546 37.500 0.00 0.00 41.33 2.41
235 236 5.049060 AGCTAACAACGTGCATTCATGTAAA 60.049 36.000 0.00 0.00 41.33 2.01
236 237 5.627367 GCTAACAACGTGCATTCATGTAAAA 59.373 36.000 0.00 0.00 41.33 1.52
237 238 6.143118 GCTAACAACGTGCATTCATGTAAAAA 59.857 34.615 0.00 0.00 41.33 1.94
251 252 2.785921 AAAAACGCACGCACACGA 59.214 50.000 0.00 0.00 43.93 4.35
252 253 1.297304 AAAAACGCACGCACACGAG 60.297 52.632 0.00 0.00 43.93 4.18
253 254 1.973137 AAAAACGCACGCACACGAGT 61.973 50.000 0.00 0.00 43.93 4.18
254 255 2.356093 AAAACGCACGCACACGAGTC 62.356 55.000 0.00 0.00 43.93 3.36
258 259 3.097728 CACGCACACGAGTCGGTC 61.098 66.667 18.30 1.69 43.93 4.79
259 260 3.588906 ACGCACACGAGTCGGTCA 61.589 61.111 18.30 0.00 43.93 4.02
260 261 2.354188 CGCACACGAGTCGGTCAA 60.354 61.111 18.30 0.00 43.93 3.18
261 262 2.365068 CGCACACGAGTCGGTCAAG 61.365 63.158 18.30 3.73 43.93 3.02
262 263 2.022129 GCACACGAGTCGGTCAAGG 61.022 63.158 18.30 1.23 0.00 3.61
263 264 2.022129 CACACGAGTCGGTCAAGGC 61.022 63.158 18.30 0.00 0.00 4.35
264 265 2.338620 CACGAGTCGGTCAAGGCA 59.661 61.111 18.30 0.00 0.00 4.75
265 266 2.022129 CACGAGTCGGTCAAGGCAC 61.022 63.158 18.30 0.00 0.00 5.01
266 267 2.432628 CGAGTCGGTCAAGGCACC 60.433 66.667 4.10 0.00 0.00 5.01
267 268 2.932234 CGAGTCGGTCAAGGCACCT 61.932 63.158 4.10 0.00 33.77 4.00
268 269 1.592400 CGAGTCGGTCAAGGCACCTA 61.592 60.000 4.10 0.00 33.77 3.08
269 270 0.173708 GAGTCGGTCAAGGCACCTAG 59.826 60.000 0.00 0.00 33.77 3.02
270 271 1.448013 GTCGGTCAAGGCACCTAGC 60.448 63.158 0.00 0.00 44.65 3.42
271 272 1.609501 TCGGTCAAGGCACCTAGCT 60.610 57.895 0.00 0.00 44.79 3.32
272 273 1.192146 TCGGTCAAGGCACCTAGCTT 61.192 55.000 0.00 0.00 44.79 3.74
273 274 0.535335 CGGTCAAGGCACCTAGCTTA 59.465 55.000 0.00 0.00 44.79 3.09
274 275 1.139058 CGGTCAAGGCACCTAGCTTAT 59.861 52.381 0.00 0.00 44.79 1.73
275 276 2.803492 CGGTCAAGGCACCTAGCTTATC 60.803 54.545 0.00 0.00 44.79 1.75
276 277 2.485657 GGTCAAGGCACCTAGCTTATCC 60.486 54.545 0.00 0.00 44.79 2.59
277 278 2.170607 GTCAAGGCACCTAGCTTATCCA 59.829 50.000 0.00 0.00 44.79 3.41
278 279 2.170607 TCAAGGCACCTAGCTTATCCAC 59.829 50.000 0.00 0.00 44.79 4.02
279 280 1.879575 AGGCACCTAGCTTATCCACA 58.120 50.000 0.00 0.00 44.79 4.17
280 281 1.486726 AGGCACCTAGCTTATCCACAC 59.513 52.381 0.00 0.00 44.79 3.82
281 282 1.209504 GGCACCTAGCTTATCCACACA 59.790 52.381 0.00 0.00 44.79 3.72
282 283 2.355716 GGCACCTAGCTTATCCACACAA 60.356 50.000 0.00 0.00 44.79 3.33
283 284 2.678336 GCACCTAGCTTATCCACACAAC 59.322 50.000 0.00 0.00 41.15 3.32
284 285 3.270877 CACCTAGCTTATCCACACAACC 58.729 50.000 0.00 0.00 0.00 3.77
285 286 2.910319 ACCTAGCTTATCCACACAACCA 59.090 45.455 0.00 0.00 0.00 3.67
286 287 3.523564 ACCTAGCTTATCCACACAACCAT 59.476 43.478 0.00 0.00 0.00 3.55
287 288 3.879295 CCTAGCTTATCCACACAACCATG 59.121 47.826 0.00 0.00 0.00 3.66
288 289 3.439857 AGCTTATCCACACAACCATGT 57.560 42.857 0.00 0.00 41.61 3.21
297 298 1.667151 ACAACCATGTGCATGCACC 59.333 52.632 40.01 25.64 45.63 5.01
298 299 1.444724 CAACCATGTGCATGCACCG 60.445 57.895 40.01 31.37 45.63 4.94
299 300 1.902918 AACCATGTGCATGCACCGT 60.903 52.632 40.01 30.65 45.63 4.83
300 301 1.865788 AACCATGTGCATGCACCGTC 61.866 55.000 40.01 21.64 45.63 4.79
301 302 2.334181 CCATGTGCATGCACCGTCA 61.334 57.895 40.01 26.21 45.63 4.35
302 303 1.580437 CATGTGCATGCACCGTCAA 59.420 52.632 40.01 25.82 45.63 3.18
303 304 0.455464 CATGTGCATGCACCGTCAAG 60.455 55.000 40.01 22.48 45.63 3.02
304 305 0.890542 ATGTGCATGCACCGTCAAGT 60.891 50.000 40.01 18.73 45.63 3.16
305 306 1.207593 GTGCATGCACCGTCAAGTC 59.792 57.895 35.69 11.32 40.79 3.01
306 307 1.227793 TGCATGCACCGTCAAGTCA 60.228 52.632 18.46 0.00 0.00 3.41
307 308 0.606130 TGCATGCACCGTCAAGTCAT 60.606 50.000 18.46 0.00 0.00 3.06
308 309 0.179181 GCATGCACCGTCAAGTCATG 60.179 55.000 14.21 0.00 37.98 3.07
309 310 1.441738 CATGCACCGTCAAGTCATGA 58.558 50.000 0.00 0.00 37.34 3.07
310 311 2.011947 CATGCACCGTCAAGTCATGAT 58.988 47.619 0.00 0.00 40.97 2.45
311 312 2.183478 TGCACCGTCAAGTCATGATT 57.817 45.000 0.00 0.00 40.97 2.57
312 313 3.326836 TGCACCGTCAAGTCATGATTA 57.673 42.857 0.00 0.00 40.97 1.75
313 314 3.872696 TGCACCGTCAAGTCATGATTAT 58.127 40.909 0.00 0.00 40.97 1.28
314 315 3.871006 TGCACCGTCAAGTCATGATTATC 59.129 43.478 0.00 0.00 40.97 1.75
315 316 3.248602 GCACCGTCAAGTCATGATTATCC 59.751 47.826 0.00 0.00 40.97 2.59
316 317 4.441792 CACCGTCAAGTCATGATTATCCA 58.558 43.478 0.00 0.00 40.97 3.41
317 318 4.875536 CACCGTCAAGTCATGATTATCCAA 59.124 41.667 0.00 0.00 40.97 3.53
318 319 5.353956 CACCGTCAAGTCATGATTATCCAAA 59.646 40.000 0.00 0.00 40.97 3.28
319 320 5.354234 ACCGTCAAGTCATGATTATCCAAAC 59.646 40.000 0.00 0.00 40.97 2.93
320 321 5.353956 CCGTCAAGTCATGATTATCCAAACA 59.646 40.000 0.00 0.00 40.97 2.83
321 322 6.457392 CCGTCAAGTCATGATTATCCAAACAG 60.457 42.308 0.00 0.00 40.97 3.16
326 327 6.363065 AGTCATGATTATCCAAACAGATGCT 58.637 36.000 0.00 0.00 0.00 3.79
331 332 1.033746 ATCCAAACAGATGCTGGCCG 61.034 55.000 0.00 0.00 35.51 6.13
335 336 0.674895 AAACAGATGCTGGCCGTCTC 60.675 55.000 0.00 0.00 37.72 3.36
336 337 1.548357 AACAGATGCTGGCCGTCTCT 61.548 55.000 0.00 0.00 37.72 3.10
344 345 0.460987 CTGGCCGTCTCTCCATTGTC 60.461 60.000 0.00 0.00 0.00 3.18
346 347 2.167861 GCCGTCTCTCCATTGTCGC 61.168 63.158 0.00 0.00 0.00 5.19
351 352 1.880340 CTCTCCATTGTCGCCGCTC 60.880 63.158 0.00 0.00 0.00 5.03
364 365 2.180204 CCGCTCGCCCAAAATCGAT 61.180 57.895 0.00 0.00 33.98 3.59
365 366 1.714899 CCGCTCGCCCAAAATCGATT 61.715 55.000 4.39 4.39 33.98 3.34
388 389 4.131596 GTTTCACCACTACAACCTAGCAA 58.868 43.478 0.00 0.00 0.00 3.91
389 390 3.396260 TCACCACTACAACCTAGCAAC 57.604 47.619 0.00 0.00 0.00 4.17
404 405 3.167414 AACGAAAGGTGGGGGAGG 58.833 61.111 0.00 0.00 0.00 4.30
406 407 1.063654 AACGAAAGGTGGGGGAGGAA 61.064 55.000 0.00 0.00 0.00 3.36
407 408 1.299976 CGAAAGGTGGGGGAGGAAG 59.700 63.158 0.00 0.00 0.00 3.46
442 444 2.182614 AAACCATGCGCGGACGAAAG 62.183 55.000 8.83 0.00 43.93 2.62
484 486 1.883084 CTACATGGCGCCGACTTCC 60.883 63.158 23.90 0.00 0.00 3.46
485 487 3.379865 TACATGGCGCCGACTTCCC 62.380 63.158 23.90 0.00 0.00 3.97
493 495 4.796231 CCGACTTCCCGCGACCAG 62.796 72.222 8.23 1.67 0.00 4.00
557 559 2.881389 CCAAGAGCGAGCGAGAGT 59.119 61.111 0.00 0.00 0.00 3.24
561 563 1.653094 AAGAGCGAGCGAGAGTGAGG 61.653 60.000 0.00 0.00 0.00 3.86
580 582 1.604147 GGGGGAATGGGAAAACTGCG 61.604 60.000 0.00 0.00 0.00 5.18
581 583 0.610785 GGGGAATGGGAAAACTGCGA 60.611 55.000 0.00 0.00 0.00 5.10
582 584 0.526211 GGGAATGGGAAAACTGCGAC 59.474 55.000 0.00 0.00 0.00 5.19
583 585 0.526211 GGAATGGGAAAACTGCGACC 59.474 55.000 0.00 0.00 0.00 4.79
603 606 4.410400 GGTTGGTGGGAGCGGAGG 62.410 72.222 0.00 0.00 0.00 4.30
604 607 4.410400 GTTGGTGGGAGCGGAGGG 62.410 72.222 0.00 0.00 0.00 4.30
610 613 4.144727 GGGAGCGGAGGGGAGAGA 62.145 72.222 0.00 0.00 0.00 3.10
631 634 0.476611 AGAGAGAAAAGGGGGCCTGT 60.477 55.000 0.84 0.00 32.13 4.00
632 635 0.322906 GAGAGAAAAGGGGGCCTGTG 60.323 60.000 0.84 0.00 32.13 3.66
633 636 1.304464 GAGAAAAGGGGGCCTGTGG 60.304 63.158 0.84 0.00 32.13 4.17
670 673 4.753516 CGGAAGGGTGATGCCATATATA 57.246 45.455 0.00 0.00 39.65 0.86
671 674 4.442706 CGGAAGGGTGATGCCATATATAC 58.557 47.826 0.00 0.00 39.65 1.47
672 675 4.162320 CGGAAGGGTGATGCCATATATACT 59.838 45.833 0.00 0.00 39.65 2.12
673 676 5.431765 GGAAGGGTGATGCCATATATACTG 58.568 45.833 0.00 0.00 39.65 2.74
674 677 5.189736 GGAAGGGTGATGCCATATATACTGA 59.810 44.000 0.00 0.00 39.65 3.41
678 681 6.444816 AGGGTGATGCCATATATACTGAATGA 59.555 38.462 0.00 0.00 39.65 2.57
679 682 6.765036 GGGTGATGCCATATATACTGAATGAG 59.235 42.308 0.00 0.00 39.65 2.90
680 683 7.365028 GGGTGATGCCATATATACTGAATGAGA 60.365 40.741 0.00 0.00 39.65 3.27
681 684 7.493971 GGTGATGCCATATATACTGAATGAGAC 59.506 40.741 0.00 0.00 37.17 3.36
682 685 8.037166 GTGATGCCATATATACTGAATGAGACA 58.963 37.037 0.00 0.00 0.00 3.41
713 716 1.329171 TGGCACTGCAACTGGCTTTT 61.329 50.000 16.00 0.00 45.15 2.27
720 723 4.682860 CACTGCAACTGGCTTTTAAGATTG 59.317 41.667 0.00 0.00 45.15 2.67
723 726 3.989817 GCAACTGGCTTTTAAGATTGGTG 59.010 43.478 0.00 0.00 40.25 4.17
752 755 0.389948 GGACGGCGATGAGACAGTTT 60.390 55.000 16.62 0.00 0.00 2.66
755 758 0.389817 CGGCGATGAGACAGTTTGGA 60.390 55.000 0.00 0.00 0.00 3.53
757 760 1.464997 GGCGATGAGACAGTTTGGAAC 59.535 52.381 0.00 0.00 0.00 3.62
758 761 1.126846 GCGATGAGACAGTTTGGAACG 59.873 52.381 0.00 0.00 36.23 3.95
759 762 2.672714 CGATGAGACAGTTTGGAACGA 58.327 47.619 0.00 0.00 36.23 3.85
760 763 2.663602 CGATGAGACAGTTTGGAACGAG 59.336 50.000 0.00 0.00 36.23 4.18
790 793 3.881937 AACTGACGTTGGGGATACTAC 57.118 47.619 0.00 0.00 30.67 2.73
795 798 3.520317 TGACGTTGGGGATACTACCATTT 59.480 43.478 0.00 0.00 36.48 2.32
798 801 4.226620 ACGTTGGGGATACTACCATTTTCT 59.773 41.667 0.00 0.00 36.48 2.52
854 862 8.082852 TCGTTACCTTATACTACTACTCCGTAG 58.917 40.741 0.00 0.00 41.98 3.51
1010 2417 2.979401 CGTCTGTCGAGAGGGATATG 57.021 55.000 10.02 0.00 42.86 1.78
1045 2452 1.818674 ACGTACCCTAACCTAACCACG 59.181 52.381 0.00 0.00 0.00 4.94
1101 2508 2.735772 GGCTCATCCGAGGAAGGCA 61.736 63.158 11.18 0.00 39.88 4.75
1129 2536 0.391597 GACGGTTCTGACCACCAAGA 59.608 55.000 0.00 0.00 46.91 3.02
1130 2537 0.393077 ACGGTTCTGACCACCAAGAG 59.607 55.000 0.00 0.00 46.91 2.85
1146 2553 1.073897 GAGGTGGACAAGCTGCCTT 59.926 57.895 0.00 0.00 36.52 4.35
1150 2557 1.960689 GGTGGACAAGCTGCCTTTAAA 59.039 47.619 0.00 0.00 0.00 1.52
1151 2558 2.288213 GGTGGACAAGCTGCCTTTAAAC 60.288 50.000 0.00 0.00 0.00 2.01
1152 2559 1.960689 TGGACAAGCTGCCTTTAAACC 59.039 47.619 0.00 0.00 0.00 3.27
1153 2560 1.960689 GGACAAGCTGCCTTTAAACCA 59.039 47.619 0.00 0.00 0.00 3.67
1154 2561 2.364002 GGACAAGCTGCCTTTAAACCAA 59.636 45.455 0.00 0.00 0.00 3.67
1155 2562 3.552890 GGACAAGCTGCCTTTAAACCAAG 60.553 47.826 0.00 0.00 0.00 3.61
1156 2563 2.224042 ACAAGCTGCCTTTAAACCAAGC 60.224 45.455 0.00 3.98 0.00 4.01
1157 2564 2.001076 AGCTGCCTTTAAACCAAGCT 57.999 45.000 0.00 7.59 0.00 3.74
1158 2565 2.319844 AGCTGCCTTTAAACCAAGCTT 58.680 42.857 0.00 0.00 0.00 3.74
1159 2566 2.700371 AGCTGCCTTTAAACCAAGCTTT 59.300 40.909 0.00 0.00 0.00 3.51
1160 2567 2.802247 GCTGCCTTTAAACCAAGCTTTG 59.198 45.455 0.00 0.00 0.00 2.77
1214 2624 2.609920 GAGGAGGAGACGGGGGAT 59.390 66.667 0.00 0.00 0.00 3.85
1217 2627 0.640495 AGGAGGAGACGGGGGATAAA 59.360 55.000 0.00 0.00 0.00 1.40
1242 2685 0.755686 ATCGGAGGAGGAGAATGTGC 59.244 55.000 0.00 0.00 0.00 4.57
1267 2710 1.738030 CGACGACAATAACCTCCACCC 60.738 57.143 0.00 0.00 0.00 4.61
1271 2714 1.301623 CAATAACCTCCACCCGCCA 59.698 57.895 0.00 0.00 0.00 5.69
1359 2803 0.035056 CAAGAGGAAGGCCGTGGATT 60.035 55.000 0.00 0.00 39.96 3.01
1384 2828 1.216710 CTGTCGAGCCCAAGAGGAC 59.783 63.158 0.00 0.00 38.24 3.85
1441 2885 0.319900 GAGGTCGCTGAAGTTGCTCA 60.320 55.000 0.00 0.00 0.00 4.26
1463 2907 0.318441 TTCAACCTGAGGTCGCTGAG 59.682 55.000 3.76 0.00 33.12 3.35
1513 2957 4.744795 AGCTATTCCAAGACAAGATCGT 57.255 40.909 0.00 0.00 0.00 3.73
1522 2966 6.697395 TCCAAGACAAGATCGTTTCTTATGA 58.303 36.000 9.31 7.12 42.98 2.15
1554 2998 0.413832 AGAGGTGTTGGCCCTAGAGA 59.586 55.000 0.00 0.00 30.60 3.10
1568 3012 4.841246 GCCCTAGAGAAGAAATATCCTGGA 59.159 45.833 0.00 0.00 0.00 3.86
1571 3015 7.475510 GCCCTAGAGAAGAAATATCCTGGATTT 60.476 40.741 15.55 4.62 0.00 2.17
1587 3031 4.072131 TGGATTTTTCAAGTCTCCCTTCG 58.928 43.478 0.00 0.00 0.00 3.79
1637 3081 4.202050 ACACTCAATGCCAAACTTCAGAAC 60.202 41.667 0.00 0.00 0.00 3.01
1640 3084 3.068024 TCAATGCCAAACTTCAGAACCAC 59.932 43.478 0.00 0.00 0.00 4.16
1653 3097 3.196469 TCAGAACCACCACATTGCAAAAA 59.804 39.130 1.71 0.00 0.00 1.94
1715 3159 5.710099 GGTGACAAACTCCCTCATCAATTTA 59.290 40.000 0.00 0.00 0.00 1.40
1767 3261 6.961554 GTCAGTTGACAAAACTTCTGTAACTG 59.038 38.462 7.37 0.00 44.18 3.16
1820 3327 6.238648 AGTTGATTGTCCGGAATTAGTTTCT 58.761 36.000 5.23 0.00 34.56 2.52
1845 3353 0.034186 AGCTCGCAATGGGGAATCAA 60.034 50.000 0.00 0.00 35.34 2.57
1870 3378 8.753497 AGGACCATGAATCTTAGGTAAAATTC 57.247 34.615 0.00 0.00 33.77 2.17
1987 3495 8.091449 GTGGAAATACCTACATTCTCAGGATAG 58.909 40.741 0.00 0.00 39.86 2.08
1995 3503 2.145397 TTCTCAGGATAGGTGAGCGT 57.855 50.000 0.00 0.00 41.16 5.07
1996 3504 2.145397 TCTCAGGATAGGTGAGCGTT 57.855 50.000 0.00 0.00 41.16 4.84
2000 3508 2.693591 TCAGGATAGGTGAGCGTTTAGG 59.306 50.000 0.00 0.00 0.00 2.69
2063 3674 3.945285 AGTCCGTATTTTTAGGTGCCATG 59.055 43.478 0.00 0.00 0.00 3.66
2106 3717 1.098050 CCTAATGCCCTGTCAACTGC 58.902 55.000 0.00 0.00 0.00 4.40
2112 3723 1.656441 CCCTGTCAACTGCAACTGC 59.344 57.895 0.00 0.00 42.50 4.40
2152 7079 9.135189 TGTTGCAATCTTCAAAGGCTATAATAT 57.865 29.630 0.59 0.00 0.00 1.28
2271 7201 6.448369 TTCCCTTCTCTGATGGAAACTTTA 57.552 37.500 1.67 0.00 34.07 1.85
2323 7256 4.574892 TGAGCAGTCGAAACATCCAATTA 58.425 39.130 0.00 0.00 0.00 1.40
2393 7329 1.650825 CCTATGTGTGTGTGCGCATA 58.349 50.000 15.91 8.59 39.84 3.14
2399 7335 3.006247 TGTGTGTGTGCGCATATAATGT 58.994 40.909 15.91 0.00 37.46 2.71
2413 7349 9.914131 GCGCATATAATGTATCTTATATCCTGA 57.086 33.333 0.30 0.00 33.84 3.86
2420 7356 7.969690 ATGTATCTTATATCCTGACTCCCTG 57.030 40.000 0.00 0.00 0.00 4.45
2453 7389 4.537015 ACTGATTAACTTTTCGCAACAGC 58.463 39.130 0.00 0.00 0.00 4.40
2510 7447 8.213518 TCTAGTGATGCAATTATCAGTTTTCC 57.786 34.615 4.30 0.00 40.33 3.13
2541 7482 3.768922 GCAGACCTGGAGCGAGCT 61.769 66.667 0.00 0.00 0.00 4.09
2755 7753 8.969267 CATGTCTGAACGATAGATTTAAGTACC 58.031 37.037 0.00 0.00 41.38 3.34
2759 7757 9.745880 TCTGAACGATAGATTTAAGTACCAATC 57.254 33.333 0.00 0.00 41.38 2.67
2761 7759 9.309516 TGAACGATAGATTTAAGTACCAATCAC 57.690 33.333 10.92 3.89 41.38 3.06
2763 7761 8.873215 ACGATAGATTTAAGTACCAATCACTG 57.127 34.615 10.92 3.26 41.38 3.66
2764 7762 8.475639 ACGATAGATTTAAGTACCAATCACTGT 58.524 33.333 10.92 3.70 41.38 3.55
2765 7763 9.314321 CGATAGATTTAAGTACCAATCACTGTT 57.686 33.333 10.92 0.00 39.76 3.16
2775 7773 8.051901 AGTACCAATCACTGTTTTAAATAGCC 57.948 34.615 1.36 0.00 0.00 3.93
2776 7774 6.280855 ACCAATCACTGTTTTAAATAGCCC 57.719 37.500 1.36 0.00 0.00 5.19
2777 7775 5.105917 ACCAATCACTGTTTTAAATAGCCCG 60.106 40.000 1.36 0.00 0.00 6.13
2779 7777 3.681593 TCACTGTTTTAAATAGCCCGCT 58.318 40.909 1.36 0.00 0.00 5.52
2781 7779 5.433526 TCACTGTTTTAAATAGCCCGCTAT 58.566 37.500 3.31 3.31 40.63 2.97
2782 7780 6.584488 TCACTGTTTTAAATAGCCCGCTATA 58.416 36.000 9.56 0.00 38.20 1.31
2783 7781 6.704493 TCACTGTTTTAAATAGCCCGCTATAG 59.296 38.462 9.56 4.62 38.20 1.31
2787 7785 4.467198 TTAAATAGCCCGCTATAGCTCC 57.533 45.455 21.98 10.06 40.56 4.70
2788 7786 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
2789 7787 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
2790 7788 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
2791 7789 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
2801 9596 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
2814 9609 4.322080 AGCACGCTATAGCATTTACAGA 57.678 40.909 23.99 0.00 42.21 3.41
2818 9613 5.050490 CACGCTATAGCATTTACAGAAGGT 58.950 41.667 23.99 6.60 42.21 3.50
2820 9615 5.069251 ACGCTATAGCATTTACAGAAGGTCT 59.931 40.000 23.99 0.00 42.21 3.85
2824 9619 2.744202 AGCATTTACAGAAGGTCTTGCG 59.256 45.455 0.00 0.00 35.26 4.85
2826 9621 2.543777 TTTACAGAAGGTCTTGCGCT 57.456 45.000 9.73 0.00 0.00 5.92
2827 9622 3.671008 TTTACAGAAGGTCTTGCGCTA 57.329 42.857 9.73 0.00 0.00 4.26
2828 9623 3.671008 TTACAGAAGGTCTTGCGCTAA 57.329 42.857 9.73 0.00 0.00 3.09
2829 9624 2.086054 ACAGAAGGTCTTGCGCTAAG 57.914 50.000 9.73 11.02 37.76 2.18
2830 9625 1.618837 ACAGAAGGTCTTGCGCTAAGA 59.381 47.619 9.73 13.31 43.01 2.10
2831 9626 2.266554 CAGAAGGTCTTGCGCTAAGAG 58.733 52.381 18.44 8.07 45.71 2.85
2834 9629 1.551452 AGGTCTTGCGCTAAGAGACT 58.449 50.000 22.91 18.83 45.71 3.24
2835 9630 1.896465 AGGTCTTGCGCTAAGAGACTT 59.104 47.619 22.91 17.23 45.71 3.01
2837 9632 2.413453 GGTCTTGCGCTAAGAGACTTTG 59.587 50.000 22.91 0.00 45.71 2.77
2838 9633 3.318017 GTCTTGCGCTAAGAGACTTTGA 58.682 45.455 18.44 0.00 45.71 2.69
2841 9636 2.893637 TGCGCTAAGAGACTTTGATCC 58.106 47.619 9.73 0.00 0.00 3.36
2842 9637 2.233676 TGCGCTAAGAGACTTTGATCCA 59.766 45.455 9.73 0.00 0.00 3.41
2843 9638 3.262420 GCGCTAAGAGACTTTGATCCAA 58.738 45.455 0.00 0.00 0.00 3.53
2844 9639 3.684788 GCGCTAAGAGACTTTGATCCAAA 59.315 43.478 0.00 0.00 0.00 3.28
2845 9640 4.154195 GCGCTAAGAGACTTTGATCCAAAA 59.846 41.667 0.00 0.00 32.75 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.180642 GGTACTAAAGAGGCAGGGGC 59.819 60.000 0.00 0.00 40.13 5.80
14 15 0.464452 CGGTACTAAAGAGGCAGGGG 59.536 60.000 0.00 0.00 0.00 4.79
15 16 0.464452 CCGGTACTAAAGAGGCAGGG 59.536 60.000 0.00 0.00 0.00 4.45
16 17 1.192428 ACCGGTACTAAAGAGGCAGG 58.808 55.000 4.49 0.00 0.00 4.85
17 18 2.232941 TGAACCGGTACTAAAGAGGCAG 59.767 50.000 8.00 0.00 0.00 4.85
18 19 2.250031 TGAACCGGTACTAAAGAGGCA 58.750 47.619 8.00 0.00 0.00 4.75
19 20 3.195661 CATGAACCGGTACTAAAGAGGC 58.804 50.000 8.00 0.00 0.00 4.70
20 21 3.793559 CCATGAACCGGTACTAAAGAGG 58.206 50.000 8.00 0.00 0.00 3.69
21 22 3.195661 GCCATGAACCGGTACTAAAGAG 58.804 50.000 8.00 0.00 0.00 2.85
22 23 2.417651 CGCCATGAACCGGTACTAAAGA 60.418 50.000 8.00 0.00 0.00 2.52
23 24 1.931172 CGCCATGAACCGGTACTAAAG 59.069 52.381 8.00 0.00 0.00 1.85
24 25 1.275856 ACGCCATGAACCGGTACTAAA 59.724 47.619 8.00 0.00 0.00 1.85
25 26 0.896923 ACGCCATGAACCGGTACTAA 59.103 50.000 8.00 0.00 0.00 2.24
26 27 0.173935 CACGCCATGAACCGGTACTA 59.826 55.000 8.00 0.00 0.00 1.82
27 28 1.079405 CACGCCATGAACCGGTACT 60.079 57.895 8.00 0.00 0.00 2.73
28 29 0.671163 TTCACGCCATGAACCGGTAC 60.671 55.000 8.00 0.00 42.62 3.34
29 30 1.672320 TTCACGCCATGAACCGGTA 59.328 52.632 8.00 0.00 42.62 4.02
30 31 2.428187 TTCACGCCATGAACCGGT 59.572 55.556 0.00 0.00 42.62 5.28
35 36 0.250793 ATACCGGTTCACGCCATGAA 59.749 50.000 15.04 0.00 45.39 2.57
36 37 1.112950 TATACCGGTTCACGCCATGA 58.887 50.000 15.04 0.00 42.52 3.07
37 38 1.942677 TTATACCGGTTCACGCCATG 58.057 50.000 15.04 0.00 42.52 3.66
38 39 2.557317 CTTTATACCGGTTCACGCCAT 58.443 47.619 15.04 0.00 42.52 4.40
39 40 1.405797 CCTTTATACCGGTTCACGCCA 60.406 52.381 15.04 0.00 42.52 5.69
40 41 1.292992 CCTTTATACCGGTTCACGCC 58.707 55.000 15.04 0.00 42.52 5.68
41 42 2.014335 ACCTTTATACCGGTTCACGC 57.986 50.000 15.04 0.00 42.52 5.34
46 47 3.679502 CGAAACGAACCTTTATACCGGTT 59.320 43.478 15.04 3.05 45.71 4.44
47 48 3.056891 TCGAAACGAACCTTTATACCGGT 60.057 43.478 13.98 13.98 31.06 5.28
48 49 3.510719 TCGAAACGAACCTTTATACCGG 58.489 45.455 0.00 0.00 31.06 5.28
60 61 3.634568 TTAGTACCGGTTCGAAACGAA 57.365 42.857 35.53 20.54 43.75 3.85
61 62 3.252215 TCTTTAGTACCGGTTCGAAACGA 59.748 43.478 35.53 15.28 0.00 3.85
62 63 3.564511 TCTTTAGTACCGGTTCGAAACG 58.435 45.455 28.11 28.11 0.00 3.60
63 64 5.405797 AGATCTTTAGTACCGGTTCGAAAC 58.594 41.667 15.04 3.84 0.00 2.78
64 65 5.393461 GGAGATCTTTAGTACCGGTTCGAAA 60.393 44.000 15.04 15.90 0.00 3.46
65 66 4.096984 GGAGATCTTTAGTACCGGTTCGAA 59.903 45.833 15.04 7.71 0.00 3.71
66 67 3.629398 GGAGATCTTTAGTACCGGTTCGA 59.371 47.826 15.04 0.00 0.00 3.71
67 68 3.631227 AGGAGATCTTTAGTACCGGTTCG 59.369 47.826 15.04 0.00 0.00 3.95
68 69 4.037803 GGAGGAGATCTTTAGTACCGGTTC 59.962 50.000 15.04 8.12 0.00 3.62
69 70 3.959449 GGAGGAGATCTTTAGTACCGGTT 59.041 47.826 15.04 0.00 0.00 4.44
70 71 3.564264 GGAGGAGATCTTTAGTACCGGT 58.436 50.000 13.98 13.98 0.00 5.28
71 72 2.892215 GGGAGGAGATCTTTAGTACCGG 59.108 54.545 0.00 0.00 0.00 5.28
72 73 2.553172 CGGGAGGAGATCTTTAGTACCG 59.447 54.545 0.00 3.49 0.00 4.02
73 74 2.296752 GCGGGAGGAGATCTTTAGTACC 59.703 54.545 0.00 0.00 0.00 3.34
74 75 2.296752 GGCGGGAGGAGATCTTTAGTAC 59.703 54.545 0.00 0.00 0.00 2.73
75 76 2.177233 AGGCGGGAGGAGATCTTTAGTA 59.823 50.000 0.00 0.00 0.00 1.82
76 77 1.062810 AGGCGGGAGGAGATCTTTAGT 60.063 52.381 0.00 0.00 0.00 2.24
77 78 1.710816 AGGCGGGAGGAGATCTTTAG 58.289 55.000 0.00 0.00 0.00 1.85
78 79 2.877866 CTAGGCGGGAGGAGATCTTTA 58.122 52.381 0.00 0.00 0.00 1.85
79 80 1.710816 CTAGGCGGGAGGAGATCTTT 58.289 55.000 0.00 0.00 0.00 2.52
80 81 0.830023 GCTAGGCGGGAGGAGATCTT 60.830 60.000 0.00 0.00 0.00 2.40
81 82 1.228737 GCTAGGCGGGAGGAGATCT 60.229 63.158 0.00 0.00 0.00 2.75
82 83 2.279810 GGCTAGGCGGGAGGAGATC 61.280 68.421 0.00 0.00 0.00 2.75
83 84 2.203714 GGCTAGGCGGGAGGAGAT 60.204 66.667 0.00 0.00 0.00 2.75
84 85 4.896829 CGGCTAGGCGGGAGGAGA 62.897 72.222 29.47 0.00 0.00 3.71
86 87 4.772231 AACGGCTAGGCGGGAGGA 62.772 66.667 37.39 0.00 33.14 3.71
87 88 4.530857 CAACGGCTAGGCGGGAGG 62.531 72.222 37.39 21.57 33.14 4.30
88 89 4.530857 CCAACGGCTAGGCGGGAG 62.531 72.222 37.39 26.25 33.14 4.30
90 91 4.090588 TTCCAACGGCTAGGCGGG 62.091 66.667 37.39 29.67 33.14 6.13
91 92 2.818274 GTTCCAACGGCTAGGCGG 60.818 66.667 37.39 22.89 35.02 6.13
92 93 2.818274 GGTTCCAACGGCTAGGCG 60.818 66.667 34.16 34.16 0.00 5.52
93 94 2.818274 CGGTTCCAACGGCTAGGC 60.818 66.667 6.15 6.15 0.00 3.93
94 95 2.125269 CCGGTTCCAACGGCTAGG 60.125 66.667 0.00 0.00 45.34 3.02
100 101 0.446222 CATTAGTGCCGGTTCCAACG 59.554 55.000 1.90 0.00 0.00 4.10
101 102 0.808755 CCATTAGTGCCGGTTCCAAC 59.191 55.000 1.90 0.00 0.00 3.77
102 103 0.693622 TCCATTAGTGCCGGTTCCAA 59.306 50.000 1.90 0.00 0.00 3.53
103 104 0.035820 GTCCATTAGTGCCGGTTCCA 60.036 55.000 1.90 0.00 0.00 3.53
104 105 0.035820 TGTCCATTAGTGCCGGTTCC 60.036 55.000 1.90 0.00 0.00 3.62
105 106 1.084289 GTGTCCATTAGTGCCGGTTC 58.916 55.000 1.90 0.00 0.00 3.62
106 107 0.398696 TGTGTCCATTAGTGCCGGTT 59.601 50.000 1.90 0.00 0.00 4.44
107 108 0.618458 ATGTGTCCATTAGTGCCGGT 59.382 50.000 1.90 0.00 0.00 5.28
108 109 1.750193 AATGTGTCCATTAGTGCCGG 58.250 50.000 0.00 0.00 39.52 6.13
115 116 2.912771 CCGGCACTAATGTGTCCATTA 58.087 47.619 0.00 0.00 45.29 1.90
116 117 1.750193 CCGGCACTAATGTGTCCATT 58.250 50.000 0.00 0.00 45.29 3.16
117 118 0.748005 GCCGGCACTAATGTGTCCAT 60.748 55.000 24.80 0.00 45.29 3.41
118 119 1.376683 GCCGGCACTAATGTGTCCA 60.377 57.895 24.80 0.00 45.29 4.02
119 120 1.078426 AGCCGGCACTAATGTGTCC 60.078 57.895 31.54 0.00 45.29 4.02
120 121 0.391130 TGAGCCGGCACTAATGTGTC 60.391 55.000 31.54 14.56 45.44 3.67
121 122 0.253044 ATGAGCCGGCACTAATGTGT 59.747 50.000 31.54 3.33 45.44 3.72
122 123 2.238942 TATGAGCCGGCACTAATGTG 57.761 50.000 31.54 0.00 46.37 3.21
123 124 3.492102 AATATGAGCCGGCACTAATGT 57.508 42.857 31.54 11.46 0.00 2.71
124 125 3.814842 TGAAATATGAGCCGGCACTAATG 59.185 43.478 31.54 0.00 0.00 1.90
125 126 4.085357 TGAAATATGAGCCGGCACTAAT 57.915 40.909 31.54 17.90 0.00 1.73
126 127 3.552132 TGAAATATGAGCCGGCACTAA 57.448 42.857 31.54 15.12 0.00 2.24
127 128 3.118408 AGTTGAAATATGAGCCGGCACTA 60.118 43.478 31.54 16.90 0.00 2.74
128 129 2.017049 GTTGAAATATGAGCCGGCACT 58.983 47.619 31.54 15.07 0.00 4.40
129 130 2.017049 AGTTGAAATATGAGCCGGCAC 58.983 47.619 31.54 24.60 0.00 5.01
130 131 2.418368 AGTTGAAATATGAGCCGGCA 57.582 45.000 31.54 9.64 0.00 5.69
131 132 2.223572 CCAAGTTGAAATATGAGCCGGC 60.224 50.000 21.89 21.89 0.00 6.13
132 133 3.065371 GTCCAAGTTGAAATATGAGCCGG 59.935 47.826 3.87 0.00 0.00 6.13
133 134 3.941483 AGTCCAAGTTGAAATATGAGCCG 59.059 43.478 3.87 0.00 0.00 5.52
134 135 7.067494 ACATTAGTCCAAGTTGAAATATGAGCC 59.933 37.037 3.87 0.00 0.00 4.70
135 136 7.989826 ACATTAGTCCAAGTTGAAATATGAGC 58.010 34.615 3.87 0.00 0.00 4.26
137 138 9.109393 GCTACATTAGTCCAAGTTGAAATATGA 57.891 33.333 3.87 0.00 0.00 2.15
138 139 9.113838 AGCTACATTAGTCCAAGTTGAAATATG 57.886 33.333 3.87 4.28 0.00 1.78
139 140 9.331282 GAGCTACATTAGTCCAAGTTGAAATAT 57.669 33.333 3.87 0.00 0.00 1.28
140 141 8.318412 TGAGCTACATTAGTCCAAGTTGAAATA 58.682 33.333 3.87 0.00 0.00 1.40
141 142 7.119846 GTGAGCTACATTAGTCCAAGTTGAAAT 59.880 37.037 3.87 0.00 0.00 2.17
142 143 6.426937 GTGAGCTACATTAGTCCAAGTTGAAA 59.573 38.462 3.87 0.00 0.00 2.69
143 144 5.932303 GTGAGCTACATTAGTCCAAGTTGAA 59.068 40.000 3.87 0.00 0.00 2.69
144 145 5.011635 TGTGAGCTACATTAGTCCAAGTTGA 59.988 40.000 3.87 0.00 33.42 3.18
145 146 5.237815 TGTGAGCTACATTAGTCCAAGTTG 58.762 41.667 0.00 0.00 33.42 3.16
146 147 5.483685 TGTGAGCTACATTAGTCCAAGTT 57.516 39.130 0.00 0.00 33.42 2.66
163 164 4.755123 AGTAGAAAACGGGTCAAATGTGAG 59.245 41.667 0.00 0.00 33.27 3.51
164 165 4.710324 AGTAGAAAACGGGTCAAATGTGA 58.290 39.130 0.00 0.00 0.00 3.58
165 166 5.699458 ACTAGTAGAAAACGGGTCAAATGTG 59.301 40.000 3.59 0.00 0.00 3.21
166 167 5.699458 CACTAGTAGAAAACGGGTCAAATGT 59.301 40.000 3.59 0.00 0.00 2.71
167 168 5.929992 TCACTAGTAGAAAACGGGTCAAATG 59.070 40.000 3.59 0.00 0.00 2.32
168 169 5.930569 GTCACTAGTAGAAAACGGGTCAAAT 59.069 40.000 3.59 0.00 0.00 2.32
169 170 5.291971 GTCACTAGTAGAAAACGGGTCAAA 58.708 41.667 3.59 0.00 0.00 2.69
170 171 4.262164 GGTCACTAGTAGAAAACGGGTCAA 60.262 45.833 3.59 0.00 0.00 3.18
171 172 3.256631 GGTCACTAGTAGAAAACGGGTCA 59.743 47.826 3.59 0.00 0.00 4.02
172 173 3.256631 TGGTCACTAGTAGAAAACGGGTC 59.743 47.826 3.59 0.00 0.00 4.46
173 174 3.006217 GTGGTCACTAGTAGAAAACGGGT 59.994 47.826 3.59 0.00 0.00 5.28
174 175 3.257624 AGTGGTCACTAGTAGAAAACGGG 59.742 47.826 3.59 0.00 40.43 5.28
175 176 4.483311 GAGTGGTCACTAGTAGAAAACGG 58.517 47.826 3.59 0.00 42.66 4.44
176 177 4.022589 TGGAGTGGTCACTAGTAGAAAACG 60.023 45.833 3.59 0.00 42.66 3.60
177 178 5.221382 TGTGGAGTGGTCACTAGTAGAAAAC 60.221 44.000 3.59 0.00 42.66 2.43
178 179 4.897076 TGTGGAGTGGTCACTAGTAGAAAA 59.103 41.667 3.59 0.00 42.66 2.29
179 180 4.476297 TGTGGAGTGGTCACTAGTAGAAA 58.524 43.478 3.59 0.00 42.66 2.52
180 181 4.079970 CTGTGGAGTGGTCACTAGTAGAA 58.920 47.826 3.59 0.00 42.66 2.10
181 182 3.329814 TCTGTGGAGTGGTCACTAGTAGA 59.670 47.826 3.59 3.81 42.66 2.59
182 183 3.687125 TCTGTGGAGTGGTCACTAGTAG 58.313 50.000 3.35 0.00 42.66 2.57
183 184 3.687125 CTCTGTGGAGTGGTCACTAGTA 58.313 50.000 3.35 0.00 42.66 1.82
184 185 2.520069 CTCTGTGGAGTGGTCACTAGT 58.480 52.381 3.35 0.00 42.66 2.57
185 186 1.203523 GCTCTGTGGAGTGGTCACTAG 59.796 57.143 3.35 0.00 42.66 2.57
186 187 1.203063 AGCTCTGTGGAGTGGTCACTA 60.203 52.381 3.35 0.00 42.66 2.74
187 188 0.470833 AGCTCTGTGGAGTGGTCACT 60.471 55.000 2.94 2.94 45.84 3.41
188 189 1.203523 CTAGCTCTGTGGAGTGGTCAC 59.796 57.143 0.00 0.00 41.38 3.67
189 190 1.550327 CTAGCTCTGTGGAGTGGTCA 58.450 55.000 0.00 0.00 41.38 4.02
190 191 0.174617 GCTAGCTCTGTGGAGTGGTC 59.825 60.000 7.70 0.00 41.38 4.02
191 192 0.252012 AGCTAGCTCTGTGGAGTGGT 60.252 55.000 12.68 0.00 41.38 4.16
192 193 1.680735 CTAGCTAGCTCTGTGGAGTGG 59.319 57.143 23.26 0.00 41.38 4.00
193 194 1.066908 GCTAGCTAGCTCTGTGGAGTG 59.933 57.143 33.71 1.00 45.62 3.51
194 195 1.398692 GCTAGCTAGCTCTGTGGAGT 58.601 55.000 33.71 0.00 45.62 3.85
205 206 2.876091 TGCACGTTGTTAGCTAGCTAG 58.124 47.619 23.03 16.84 0.00 3.42
206 207 3.520290 ATGCACGTTGTTAGCTAGCTA 57.480 42.857 20.67 20.67 0.00 3.32
207 208 2.386661 ATGCACGTTGTTAGCTAGCT 57.613 45.000 23.12 23.12 0.00 3.32
208 209 2.415168 TGAATGCACGTTGTTAGCTAGC 59.585 45.455 6.62 6.62 0.00 3.42
209 210 4.093408 ACATGAATGCACGTTGTTAGCTAG 59.907 41.667 0.00 0.00 0.00 3.42
210 211 4.000325 ACATGAATGCACGTTGTTAGCTA 59.000 39.130 0.00 0.00 0.00 3.32
211 212 2.813754 ACATGAATGCACGTTGTTAGCT 59.186 40.909 0.00 0.00 0.00 3.32
212 213 3.201726 ACATGAATGCACGTTGTTAGC 57.798 42.857 0.00 0.00 0.00 3.09
213 214 7.616103 TTTTTACATGAATGCACGTTGTTAG 57.384 32.000 0.00 0.00 0.00 2.34
234 235 1.297304 CTCGTGTGCGTGCGTTTTT 60.297 52.632 0.00 0.00 39.49 1.94
235 236 2.323105 CTCGTGTGCGTGCGTTTT 59.677 55.556 0.00 0.00 39.49 2.43
236 237 2.867091 GACTCGTGTGCGTGCGTTT 61.867 57.895 0.00 0.00 39.49 3.60
237 238 3.327754 GACTCGTGTGCGTGCGTT 61.328 61.111 0.00 0.00 39.49 4.84
241 242 3.097728 GACCGACTCGTGTGCGTG 61.098 66.667 0.00 0.00 39.49 5.34
242 243 3.128632 TTGACCGACTCGTGTGCGT 62.129 57.895 0.00 0.00 39.49 5.24
243 244 2.354188 TTGACCGACTCGTGTGCG 60.354 61.111 0.00 0.00 39.92 5.34
244 245 2.022129 CCTTGACCGACTCGTGTGC 61.022 63.158 0.00 0.00 0.00 4.57
245 246 2.022129 GCCTTGACCGACTCGTGTG 61.022 63.158 0.00 0.00 0.00 3.82
246 247 2.338984 GCCTTGACCGACTCGTGT 59.661 61.111 0.00 0.00 0.00 4.49
247 248 2.022129 GTGCCTTGACCGACTCGTG 61.022 63.158 0.00 0.00 0.00 4.35
248 249 2.338984 GTGCCTTGACCGACTCGT 59.661 61.111 0.00 0.00 0.00 4.18
249 250 1.592400 TAGGTGCCTTGACCGACTCG 61.592 60.000 0.00 0.00 41.35 4.18
250 251 0.173708 CTAGGTGCCTTGACCGACTC 59.826 60.000 0.00 0.00 41.35 3.36
251 252 1.889530 GCTAGGTGCCTTGACCGACT 61.890 60.000 3.94 0.00 41.35 4.18
252 253 1.448013 GCTAGGTGCCTTGACCGAC 60.448 63.158 3.94 0.00 41.35 4.79
253 254 1.192146 AAGCTAGGTGCCTTGACCGA 61.192 55.000 0.00 0.00 44.23 4.69
254 255 0.535335 TAAGCTAGGTGCCTTGACCG 59.465 55.000 0.00 0.00 44.23 4.79
255 256 2.485657 GGATAAGCTAGGTGCCTTGACC 60.486 54.545 0.00 0.00 44.23 4.02
256 257 2.170607 TGGATAAGCTAGGTGCCTTGAC 59.829 50.000 0.00 0.00 44.23 3.18
257 258 2.170607 GTGGATAAGCTAGGTGCCTTGA 59.829 50.000 0.00 0.00 44.23 3.02
258 259 2.092968 TGTGGATAAGCTAGGTGCCTTG 60.093 50.000 0.00 0.00 44.23 3.61
259 260 2.092914 GTGTGGATAAGCTAGGTGCCTT 60.093 50.000 0.00 0.00 44.23 4.35
260 261 1.486726 GTGTGGATAAGCTAGGTGCCT 59.513 52.381 0.00 0.00 44.23 4.75
261 262 1.209504 TGTGTGGATAAGCTAGGTGCC 59.790 52.381 0.00 0.00 44.23 5.01
262 263 2.678336 GTTGTGTGGATAAGCTAGGTGC 59.322 50.000 0.00 0.00 43.29 5.01
263 264 3.270877 GGTTGTGTGGATAAGCTAGGTG 58.729 50.000 0.00 0.00 0.00 4.00
264 265 2.910319 TGGTTGTGTGGATAAGCTAGGT 59.090 45.455 0.00 0.00 0.00 3.08
265 266 3.627395 TGGTTGTGTGGATAAGCTAGG 57.373 47.619 0.00 0.00 0.00 3.02
266 267 4.333649 CACATGGTTGTGTGGATAAGCTAG 59.666 45.833 0.00 0.00 46.68 3.42
267 268 4.260985 CACATGGTTGTGTGGATAAGCTA 58.739 43.478 0.00 0.00 46.68 3.32
268 269 3.084039 CACATGGTTGTGTGGATAAGCT 58.916 45.455 0.00 0.00 46.68 3.74
269 270 3.492421 CACATGGTTGTGTGGATAAGC 57.508 47.619 0.00 0.00 46.68 3.09
287 288 1.207593 GACTTGACGGTGCATGCAC 59.792 57.895 37.29 37.29 45.49 4.57
288 289 0.606130 ATGACTTGACGGTGCATGCA 60.606 50.000 18.46 18.46 0.00 3.96
289 290 0.179181 CATGACTTGACGGTGCATGC 60.179 55.000 11.82 11.82 31.24 4.06
290 291 1.441738 TCATGACTTGACGGTGCATG 58.558 50.000 0.00 0.00 38.09 4.06
291 292 2.408271 ATCATGACTTGACGGTGCAT 57.592 45.000 0.00 0.00 37.11 3.96
292 293 2.183478 AATCATGACTTGACGGTGCA 57.817 45.000 0.00 0.00 37.11 4.57
293 294 3.248602 GGATAATCATGACTTGACGGTGC 59.751 47.826 0.00 0.00 37.11 5.01
294 295 4.441792 TGGATAATCATGACTTGACGGTG 58.558 43.478 0.00 0.00 37.11 4.94
295 296 4.753516 TGGATAATCATGACTTGACGGT 57.246 40.909 0.00 0.00 37.11 4.83
296 297 5.353956 TGTTTGGATAATCATGACTTGACGG 59.646 40.000 0.00 0.00 37.11 4.79
297 298 6.313658 TCTGTTTGGATAATCATGACTTGACG 59.686 38.462 0.00 0.00 37.11 4.35
298 299 7.615582 TCTGTTTGGATAATCATGACTTGAC 57.384 36.000 0.00 0.00 37.11 3.18
299 300 7.201758 GCATCTGTTTGGATAATCATGACTTGA 60.202 37.037 0.00 0.00 39.12 3.02
300 301 6.916387 GCATCTGTTTGGATAATCATGACTTG 59.084 38.462 0.00 0.00 0.00 3.16
301 302 6.832384 AGCATCTGTTTGGATAATCATGACTT 59.168 34.615 0.00 0.00 0.00 3.01
302 303 6.262496 CAGCATCTGTTTGGATAATCATGACT 59.738 38.462 0.00 0.00 0.00 3.41
303 304 6.436261 CAGCATCTGTTTGGATAATCATGAC 58.564 40.000 0.00 0.00 0.00 3.06
304 305 5.533528 CCAGCATCTGTTTGGATAATCATGA 59.466 40.000 0.00 0.00 33.76 3.07
305 306 5.769367 CCAGCATCTGTTTGGATAATCATG 58.231 41.667 0.00 0.00 33.76 3.07
306 307 4.280174 GCCAGCATCTGTTTGGATAATCAT 59.720 41.667 6.95 0.00 33.76 2.45
307 308 3.633525 GCCAGCATCTGTTTGGATAATCA 59.366 43.478 6.95 0.00 33.76 2.57
308 309 3.005155 GGCCAGCATCTGTTTGGATAATC 59.995 47.826 0.00 0.00 33.76 1.75
309 310 2.961062 GGCCAGCATCTGTTTGGATAAT 59.039 45.455 0.00 0.00 33.76 1.28
310 311 2.378038 GGCCAGCATCTGTTTGGATAA 58.622 47.619 0.00 0.00 33.76 1.75
311 312 1.746861 CGGCCAGCATCTGTTTGGATA 60.747 52.381 2.24 0.00 33.76 2.59
312 313 1.033746 CGGCCAGCATCTGTTTGGAT 61.034 55.000 2.24 0.00 33.76 3.41
313 314 1.675310 CGGCCAGCATCTGTTTGGA 60.675 57.895 2.24 0.00 33.76 3.53
314 315 1.926511 GACGGCCAGCATCTGTTTGG 61.927 60.000 2.24 0.00 35.06 3.28
315 316 0.957395 AGACGGCCAGCATCTGTTTG 60.957 55.000 2.24 0.00 0.00 2.93
316 317 0.674895 GAGACGGCCAGCATCTGTTT 60.675 55.000 2.24 0.00 0.00 2.83
317 318 1.078848 GAGACGGCCAGCATCTGTT 60.079 57.895 2.24 0.00 0.00 3.16
318 319 1.954362 GAGAGACGGCCAGCATCTGT 61.954 60.000 2.24 0.00 0.00 3.41
319 320 1.227205 GAGAGACGGCCAGCATCTG 60.227 63.158 2.24 0.00 0.00 2.90
320 321 2.430610 GGAGAGACGGCCAGCATCT 61.431 63.158 2.24 0.00 0.00 2.90
321 322 2.037620 ATGGAGAGACGGCCAGCATC 62.038 60.000 2.24 0.00 37.64 3.91
326 327 1.596934 GACAATGGAGAGACGGCCA 59.403 57.895 2.24 0.00 38.78 5.36
331 332 2.167861 GCGGCGACAATGGAGAGAC 61.168 63.158 12.98 0.00 0.00 3.36
335 336 3.257561 CGAGCGGCGACAATGGAG 61.258 66.667 12.98 0.00 44.57 3.86
344 345 4.536687 GATTTTGGGCGAGCGGCG 62.537 66.667 0.51 0.51 44.92 6.46
346 347 1.714899 AATCGATTTTGGGCGAGCGG 61.715 55.000 4.39 0.00 40.14 5.52
351 352 2.661195 GTGAAACAATCGATTTTGGGCG 59.339 45.455 8.21 0.00 36.32 6.13
364 365 4.131596 GCTAGGTTGTAGTGGTGAAACAA 58.868 43.478 0.00 0.00 39.98 2.83
365 366 3.134985 TGCTAGGTTGTAGTGGTGAAACA 59.865 43.478 0.00 0.00 39.98 2.83
388 389 1.462627 TTCCTCCCCCACCTTTCGT 60.463 57.895 0.00 0.00 0.00 3.85
389 390 1.299976 CTTCCTCCCCCACCTTTCG 59.700 63.158 0.00 0.00 0.00 3.46
416 418 1.211449 CGCGCATGGTTTTGCCTAA 59.789 52.632 8.75 0.00 39.52 2.69
432 434 1.654105 CACACTGATACTTTCGTCCGC 59.346 52.381 0.00 0.00 0.00 5.54
434 436 2.000447 GCCACACTGATACTTTCGTCC 59.000 52.381 0.00 0.00 0.00 4.79
442 444 2.022195 TCTACTCCGCCACACTGATAC 58.978 52.381 0.00 0.00 0.00 2.24
444 446 1.410517 CATCTACTCCGCCACACTGAT 59.589 52.381 0.00 0.00 0.00 2.90
446 448 0.179100 CCATCTACTCCGCCACACTG 60.179 60.000 0.00 0.00 0.00 3.66
484 486 0.099968 TCGTCTATTTCTGGTCGCGG 59.900 55.000 6.13 0.00 0.00 6.46
485 487 1.189403 GTCGTCTATTTCTGGTCGCG 58.811 55.000 0.00 0.00 0.00 5.87
490 492 3.512680 GGTCACAGTCGTCTATTTCTGG 58.487 50.000 0.00 0.00 32.92 3.86
493 495 3.870633 AGGGTCACAGTCGTCTATTTC 57.129 47.619 0.00 0.00 0.00 2.17
531 533 3.123620 CGCTCTTGGCTGGTCTGC 61.124 66.667 0.00 0.00 39.13 4.26
534 536 2.817396 GCTCGCTCTTGGCTGGTC 60.817 66.667 0.00 0.00 39.13 4.02
542 544 1.653094 CCTCACTCTCGCTCGCTCTT 61.653 60.000 0.00 0.00 0.00 2.85
561 563 1.604147 CGCAGTTTTCCCATTCCCCC 61.604 60.000 0.00 0.00 0.00 5.40
572 574 2.898343 AACCGCGGTCGCAGTTTT 60.898 55.556 34.29 10.72 38.42 2.43
599 602 1.518367 TCTCTCTCTCTCTCCCCTCC 58.482 60.000 0.00 0.00 0.00 4.30
603 606 3.031013 CCCTTTTCTCTCTCTCTCTCCC 58.969 54.545 0.00 0.00 0.00 4.30
604 607 3.031013 CCCCTTTTCTCTCTCTCTCTCC 58.969 54.545 0.00 0.00 0.00 3.71
605 608 3.031013 CCCCCTTTTCTCTCTCTCTCTC 58.969 54.545 0.00 0.00 0.00 3.20
606 609 2.892301 GCCCCCTTTTCTCTCTCTCTCT 60.892 54.545 0.00 0.00 0.00 3.10
607 610 1.484653 GCCCCCTTTTCTCTCTCTCTC 59.515 57.143 0.00 0.00 0.00 3.20
610 613 0.120172 AGGCCCCCTTTTCTCTCTCT 59.880 55.000 0.00 0.00 0.00 3.10
657 660 8.137745 TGTCTCATTCAGTATATATGGCATCA 57.862 34.615 1.65 0.00 0.00 3.07
666 669 9.539825 GTCAGATGTTTGTCTCATTCAGTATAT 57.460 33.333 0.00 0.00 0.00 0.86
667 670 7.702348 CGTCAGATGTTTGTCTCATTCAGTATA 59.298 37.037 0.00 0.00 0.00 1.47
670 673 4.687948 CGTCAGATGTTTGTCTCATTCAGT 59.312 41.667 0.00 0.00 0.00 3.41
671 674 4.687948 ACGTCAGATGTTTGTCTCATTCAG 59.312 41.667 0.00 0.00 0.00 3.02
672 675 4.448732 CACGTCAGATGTTTGTCTCATTCA 59.551 41.667 0.00 0.00 0.00 2.57
673 676 4.143030 CCACGTCAGATGTTTGTCTCATTC 60.143 45.833 0.00 0.00 0.00 2.67
674 677 3.748048 CCACGTCAGATGTTTGTCTCATT 59.252 43.478 0.00 0.00 0.00 2.57
678 681 1.202639 TGCCACGTCAGATGTTTGTCT 60.203 47.619 0.00 0.00 0.00 3.41
679 682 1.069906 GTGCCACGTCAGATGTTTGTC 60.070 52.381 0.00 0.00 0.00 3.18
680 683 0.944386 GTGCCACGTCAGATGTTTGT 59.056 50.000 0.00 0.00 0.00 2.83
681 684 1.069703 CAGTGCCACGTCAGATGTTTG 60.070 52.381 0.00 0.00 0.00 2.93
682 685 1.229428 CAGTGCCACGTCAGATGTTT 58.771 50.000 0.00 0.00 0.00 2.83
690 693 2.633657 CAGTTGCAGTGCCACGTC 59.366 61.111 13.72 0.00 29.20 4.34
713 716 2.916502 ATCGCGGCGCACCAATCTTA 62.917 55.000 32.61 5.08 34.57 2.10
739 742 2.663602 CTCGTTCCAAACTGTCTCATCG 59.336 50.000 0.00 0.00 0.00 3.84
743 746 3.718815 AGTTCTCGTTCCAAACTGTCTC 58.281 45.455 0.00 0.00 32.22 3.36
854 862 1.792949 CTTCCTTGTGCGCCGATATAC 59.207 52.381 4.18 0.00 0.00 1.47
980 2387 1.329292 TCGACAGACGGCTTTGTTTTG 59.671 47.619 0.00 0.00 42.82 2.44
1010 2417 0.179129 TACGTCTTTCGGAATCGGGC 60.179 55.000 0.00 0.13 44.69 6.13
1013 2420 1.133790 AGGGTACGTCTTTCGGAATCG 59.866 52.381 0.00 0.49 44.69 3.34
1045 2452 1.293179 GCCATGGAAGCAACCAACC 59.707 57.895 18.40 0.00 43.47 3.77
1099 2506 3.644399 GAACCGTCGGAGGAGGTGC 62.644 68.421 20.51 0.00 38.44 5.01
1101 2508 1.977544 CAGAACCGTCGGAGGAGGT 60.978 63.158 20.51 0.00 40.50 3.85
1129 2536 0.771127 TAAAGGCAGCTTGTCCACCT 59.229 50.000 0.00 0.00 0.00 4.00
1130 2537 1.616159 TTAAAGGCAGCTTGTCCACC 58.384 50.000 0.00 0.00 0.00 4.61
1136 2543 2.036346 AGCTTGGTTTAAAGGCAGCTTG 59.964 45.455 8.50 0.00 33.79 4.01
1141 2548 3.467374 CCAAAGCTTGGTTTAAAGGCA 57.533 42.857 0.00 0.00 45.93 4.75
1162 2569 3.220999 TTGGAGGAGTCGTGGTGCG 62.221 63.158 0.00 0.00 43.01 5.34
1163 2570 1.668151 GTTGGAGGAGTCGTGGTGC 60.668 63.158 0.00 0.00 0.00 5.01
1166 2573 2.261671 CCGTTGGAGGAGTCGTGG 59.738 66.667 0.00 0.00 0.00 4.94
1179 2586 2.763448 CCTCCTCTGATTCTTCTCCGTT 59.237 50.000 0.00 0.00 0.00 4.44
1193 2600 2.695970 CCCCGTCTCCTCCTCCTCT 61.696 68.421 0.00 0.00 0.00 3.69
1214 2624 4.868268 TCTCCTCCTCCGATTCTTCTTTA 58.132 43.478 0.00 0.00 0.00 1.85
1217 2627 3.390175 TTCTCCTCCTCCGATTCTTCT 57.610 47.619 0.00 0.00 0.00 2.85
1242 2685 0.108329 AGGTTATTGTCGTCGGGCAG 60.108 55.000 0.00 0.00 0.00 4.85
1271 2714 2.591715 GTGTCGCCTTGCAGTGGT 60.592 61.111 9.17 0.00 0.00 4.16
1327 2770 3.635268 CTCTTGGGCTGGGACCTGC 62.635 68.421 11.31 11.31 39.65 4.85
1337 2780 4.035102 ACGGCCTTCCTCTTGGGC 62.035 66.667 0.00 0.00 44.59 5.36
1384 2828 4.933064 GCGACTCGGCCATCCTCG 62.933 72.222 2.24 4.02 32.59 4.63
1441 2885 1.066573 CAGCGACCTCAGGTTGAATCT 60.067 52.381 16.28 0.00 39.36 2.40
1513 2957 2.224992 TGCCCAAGGTGCTCATAAGAAA 60.225 45.455 0.00 0.00 0.00 2.52
1522 2966 2.437897 CCTCTTGCCCAAGGTGCT 59.562 61.111 8.06 0.00 38.88 4.40
1554 2998 9.539194 AGACTTGAAAAATCCAGGATATTTCTT 57.461 29.630 1.02 0.00 32.60 2.52
1568 3012 4.714632 TCACGAAGGGAGACTTGAAAAAT 58.285 39.130 0.00 0.00 40.21 1.82
1571 3015 3.728845 CTTCACGAAGGGAGACTTGAAA 58.271 45.455 0.00 0.00 40.21 2.69
1587 3031 3.333804 CCTTCTCTTCAGGAAGCTTCAC 58.666 50.000 27.02 16.31 38.91 3.18
1637 3081 4.083377 GCCTTTATTTTTGCAATGTGGTGG 60.083 41.667 0.00 0.00 0.00 4.61
1640 3084 5.446206 CGATGCCTTTATTTTTGCAATGTGG 60.446 40.000 0.00 0.00 37.27 4.17
1653 3097 3.557898 CCCAGCTGTATCGATGCCTTTAT 60.558 47.826 13.81 0.00 0.00 1.40
1759 3253 9.476202 TGCAAGCATATATAACTACAGTTACAG 57.524 33.333 4.01 0.00 42.55 2.74
1767 3261 8.553459 AGACCAATGCAAGCATATATAACTAC 57.447 34.615 8.12 0.00 35.31 2.73
1777 3271 3.894759 ACTATGAGACCAATGCAAGCAT 58.105 40.909 0.86 0.86 38.46 3.79
1820 3327 1.173043 CCCCATTGCGAGCTAACAAA 58.827 50.000 5.09 0.00 0.00 2.83
1845 3353 8.336235 TGAATTTTACCTAAGATTCATGGTCCT 58.664 33.333 6.83 0.00 40.00 3.85
1960 3468 5.724370 TCCTGAGAATGTAGGTATTTCCACA 59.276 40.000 0.00 0.00 39.02 4.17
1972 3480 3.570125 CGCTCACCTATCCTGAGAATGTA 59.430 47.826 0.00 0.00 37.90 2.29
1975 3483 2.672098 ACGCTCACCTATCCTGAGAAT 58.328 47.619 0.00 0.00 37.90 2.40
1987 3495 1.944709 ACAACAACCTAAACGCTCACC 59.055 47.619 0.00 0.00 0.00 4.02
2022 3530 5.220970 CGGACTTTCACCAATTTAACAGTGT 60.221 40.000 0.00 0.00 0.00 3.55
2041 3648 3.706600 TGGCACCTAAAAATACGGACT 57.293 42.857 0.00 0.00 0.00 3.85
2063 3674 1.680314 CTCCCTTTGCTTGGAGCCC 60.680 63.158 0.00 0.00 41.59 5.19
2106 3717 4.170256 ACAAAAAGTTGGTAACGCAGTTG 58.830 39.130 4.52 0.00 45.13 3.16
2136 3747 8.094548 ACAGCGTGATATATTATAGCCTTTGAA 58.905 33.333 0.00 0.00 0.00 2.69
2252 7182 9.442047 AACAGTATAAAGTTTCCATCAGAGAAG 57.558 33.333 0.00 0.00 0.00 2.85
2257 7187 7.687941 ACCAACAGTATAAAGTTTCCATCAG 57.312 36.000 0.00 0.00 0.00 2.90
2323 7256 9.376075 CAATCAGATCATGAGTGTACTAAAGTT 57.624 33.333 0.09 0.00 46.46 2.66
2376 7312 4.813697 ACATTATATGCGCACACACACATA 59.186 37.500 14.90 0.00 0.00 2.29
2399 7335 7.713518 ACATCAGGGAGTCAGGATATAAGATA 58.286 38.462 0.00 0.00 0.00 1.98
2413 7349 3.584406 TCAGTCAATGAACATCAGGGAGT 59.416 43.478 0.00 0.00 34.02 3.85
2417 7353 7.621428 AGTTAATCAGTCAATGAACATCAGG 57.379 36.000 0.00 0.00 42.53 3.86
2420 7356 9.055248 CGAAAAGTTAATCAGTCAATGAACATC 57.945 33.333 0.00 0.00 42.53 3.06
2453 7389 8.746922 TTATCAAAAGCTTAATTGCACAGAAG 57.253 30.769 0.00 0.00 34.99 2.85
2510 7447 1.818674 GGTCTGCAACAAATGGGTAGG 59.181 52.381 0.00 0.00 0.00 3.18
2541 7482 3.252215 CCTACAAACTGAACGCATTTCCA 59.748 43.478 0.00 0.00 32.58 3.53
2702 7700 5.567534 CGACCTGAACCAAAATTTGATAACG 59.432 40.000 7.37 0.00 0.00 3.18
2755 7753 4.798387 GCGGGCTATTTAAAACAGTGATTG 59.202 41.667 0.00 0.00 0.00 2.67
2759 7757 5.751243 ATAGCGGGCTATTTAAAACAGTG 57.249 39.130 7.36 0.00 35.92 3.66
2761 7759 5.928153 GCTATAGCGGGCTATTTAAAACAG 58.072 41.667 17.49 8.76 39.65 3.16
2783 7781 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
2790 7788 7.153217 TCTGTAAATGCTATAGCGTGCTATA 57.847 36.000 20.02 17.96 45.83 1.31
2791 7789 6.025749 TCTGTAAATGCTATAGCGTGCTAT 57.974 37.500 20.02 17.65 45.83 2.97
2793 7791 4.322080 TCTGTAAATGCTATAGCGTGCT 57.678 40.909 20.02 12.62 45.83 4.40
2794 7792 4.084328 CCTTCTGTAAATGCTATAGCGTGC 60.084 45.833 20.02 13.30 45.83 5.34
2795 7793 5.050490 ACCTTCTGTAAATGCTATAGCGTG 58.950 41.667 20.02 7.47 45.83 5.34
2797 7795 5.533482 AGACCTTCTGTAAATGCTATAGCG 58.467 41.667 19.55 3.86 45.83 4.26
2801 9596 4.572389 CGCAAGACCTTCTGTAAATGCTAT 59.428 41.667 0.00 0.00 43.02 2.97
2805 9600 2.744202 AGCGCAAGACCTTCTGTAAATG 59.256 45.455 11.47 0.00 43.02 2.32
2807 9602 2.543777 AGCGCAAGACCTTCTGTAAA 57.456 45.000 11.47 0.00 43.02 2.01
2808 9603 3.257375 TCTTAGCGCAAGACCTTCTGTAA 59.743 43.478 11.47 0.00 38.39 2.41
2810 9605 1.618837 TCTTAGCGCAAGACCTTCTGT 59.381 47.619 11.47 0.00 38.39 3.41
2814 9609 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
2818 9613 3.660501 TCAAAGTCTCTTAGCGCAAGA 57.339 42.857 11.47 15.40 41.10 3.02
2820 9615 3.262420 GGATCAAAGTCTCTTAGCGCAA 58.738 45.455 11.47 0.50 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.