Multiple sequence alignment - TraesCS5D01G023500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G023500 | chr5D | 100.000 | 6217 | 0 | 0 | 1 | 6217 | 18188076 | 18194292 | 0.000000e+00 | 11481.0 |
1 | TraesCS5D01G023500 | chr5D | 97.619 | 126 | 1 | 1 | 5672 | 5797 | 294640358 | 294640235 | 1.360000e-51 | 215.0 |
2 | TraesCS5D01G023500 | chr5D | 90.476 | 126 | 4 | 3 | 5672 | 5797 | 358548761 | 358548644 | 6.450000e-35 | 159.0 |
3 | TraesCS5D01G023500 | chr5A | 92.188 | 4903 | 243 | 55 | 848 | 5673 | 11965122 | 11969961 | 0.000000e+00 | 6804.0 |
4 | TraesCS5D01G023500 | chr5A | 84.371 | 883 | 105 | 23 | 4496 | 5352 | 12041003 | 12041878 | 0.000000e+00 | 835.0 |
5 | TraesCS5D01G023500 | chr5A | 85.457 | 777 | 99 | 11 | 4802 | 5571 | 12027074 | 12027843 | 0.000000e+00 | 797.0 |
6 | TraesCS5D01G023500 | chr5A | 89.810 | 422 | 23 | 11 | 5796 | 6198 | 11969960 | 11970380 | 1.990000e-144 | 523.0 |
7 | TraesCS5D01G023500 | chr5A | 87.150 | 428 | 48 | 4 | 4372 | 4796 | 12134226 | 12134649 | 4.360000e-131 | 479.0 |
8 | TraesCS5D01G023500 | chr5A | 81.431 | 587 | 81 | 18 | 4761 | 5331 | 12033710 | 12034284 | 7.350000e-124 | 455.0 |
9 | TraesCS5D01G023500 | chr5A | 80.143 | 559 | 79 | 18 | 4818 | 5354 | 12134704 | 12135252 | 7.560000e-104 | 388.0 |
10 | TraesCS5D01G023500 | chr5A | 87.692 | 195 | 21 | 3 | 4126 | 4318 | 12132468 | 12132661 | 2.260000e-54 | 224.0 |
11 | TraesCS5D01G023500 | chr5A | 95.745 | 47 | 2 | 0 | 6069 | 6115 | 11970196 | 11970242 | 6.680000e-10 | 76.8 |
12 | TraesCS5D01G023500 | chr5A | 95.652 | 46 | 2 | 0 | 2395 | 2440 | 11976793 | 11976838 | 2.400000e-09 | 75.0 |
13 | TraesCS5D01G023500 | chr5B | 91.097 | 2415 | 159 | 23 | 2958 | 5325 | 13723897 | 13726302 | 0.000000e+00 | 3217.0 |
14 | TraesCS5D01G023500 | chr5B | 93.101 | 1638 | 74 | 10 | 1404 | 3023 | 13722281 | 13723897 | 0.000000e+00 | 2362.0 |
15 | TraesCS5D01G023500 | chr5B | 91.419 | 606 | 30 | 11 | 808 | 1403 | 13721602 | 13722195 | 0.000000e+00 | 811.0 |
16 | TraesCS5D01G023500 | chr5B | 91.071 | 336 | 21 | 5 | 4613 | 4939 | 13726859 | 13727194 | 4.420000e-121 | 446.0 |
17 | TraesCS5D01G023500 | chr5B | 93.651 | 126 | 3 | 1 | 5672 | 5797 | 312761938 | 312761818 | 3.830000e-42 | 183.0 |
18 | TraesCS5D01G023500 | chr5B | 91.603 | 131 | 7 | 1 | 5672 | 5802 | 680823753 | 680823627 | 1.780000e-40 | 178.0 |
19 | TraesCS5D01G023500 | chr5B | 90.654 | 107 | 10 | 0 | 1584 | 1690 | 13722308 | 13722414 | 6.500000e-30 | 143.0 |
20 | TraesCS5D01G023500 | chr5B | 96.970 | 66 | 1 | 1 | 4468 | 4533 | 13726805 | 13726869 | 6.590000e-20 | 110.0 |
21 | TraesCS5D01G023500 | chr5B | 82.796 | 93 | 11 | 4 | 5085 | 5176 | 13727252 | 13727340 | 1.860000e-10 | 78.7 |
22 | TraesCS5D01G023500 | chr1B | 90.700 | 828 | 35 | 10 | 1 | 801 | 637603679 | 637604491 | 0.000000e+00 | 1064.0 |
23 | TraesCS5D01G023500 | chr1B | 94.531 | 128 | 7 | 0 | 5672 | 5799 | 136627014 | 136627141 | 1.370000e-46 | 198.0 |
24 | TraesCS5D01G023500 | chr1B | 90.476 | 126 | 8 | 2 | 5672 | 5797 | 240488033 | 240487912 | 4.990000e-36 | 163.0 |
25 | TraesCS5D01G023500 | chr3B | 95.149 | 639 | 18 | 3 | 1 | 638 | 104367644 | 104367018 | 0.000000e+00 | 996.0 |
26 | TraesCS5D01G023500 | chr3B | 93.571 | 140 | 4 | 4 | 681 | 815 | 104367022 | 104366883 | 2.940000e-48 | 204.0 |
27 | TraesCS5D01G023500 | chr3B | 91.270 | 126 | 11 | 0 | 5672 | 5797 | 190161045 | 190160920 | 8.290000e-39 | 172.0 |
28 | TraesCS5D01G023500 | chr7D | 94.262 | 488 | 15 | 5 | 22 | 508 | 105827458 | 105827933 | 0.000000e+00 | 734.0 |
29 | TraesCS5D01G023500 | chr7A | 93.060 | 317 | 7 | 5 | 1 | 315 | 623424897 | 623424594 | 3.420000e-122 | 449.0 |
30 | TraesCS5D01G023500 | chr7A | 97.196 | 214 | 4 | 2 | 346 | 558 | 623424595 | 623424383 | 1.650000e-95 | 361.0 |
31 | TraesCS5D01G023500 | chr7A | 88.261 | 230 | 19 | 2 | 572 | 801 | 623325308 | 623325087 | 1.030000e-67 | 268.0 |
32 | TraesCS5D01G023500 | chr2A | 87.375 | 301 | 24 | 7 | 508 | 801 | 4011712 | 4011419 | 3.590000e-87 | 333.0 |
33 | TraesCS5D01G023500 | chr2A | 96.875 | 128 | 3 | 1 | 5671 | 5797 | 1954658 | 1954531 | 4.880000e-51 | 213.0 |
34 | TraesCS5D01G023500 | chr2A | 96.875 | 128 | 3 | 1 | 5671 | 5797 | 2084599 | 2084472 | 4.880000e-51 | 213.0 |
35 | TraesCS5D01G023500 | chr4A | 80.734 | 109 | 11 | 8 | 5218 | 5324 | 643935160 | 643935060 | 6.680000e-10 | 76.8 |
36 | TraesCS5D01G023500 | chr4A | 80.734 | 109 | 11 | 8 | 5218 | 5324 | 643954079 | 643953979 | 6.680000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G023500 | chr5D | 18188076 | 18194292 | 6216 | False | 11481.000000 | 11481 | 100.000000 | 1 | 6217 | 1 | chr5D.!!$F1 | 6216 |
1 | TraesCS5D01G023500 | chr5A | 11965122 | 11970380 | 5258 | False | 2467.933333 | 6804 | 92.581000 | 848 | 6198 | 3 | chr5A.!!$F5 | 5350 |
2 | TraesCS5D01G023500 | chr5A | 12041003 | 12041878 | 875 | False | 835.000000 | 835 | 84.371000 | 4496 | 5352 | 1 | chr5A.!!$F4 | 856 |
3 | TraesCS5D01G023500 | chr5A | 12027074 | 12027843 | 769 | False | 797.000000 | 797 | 85.457000 | 4802 | 5571 | 1 | chr5A.!!$F2 | 769 |
4 | TraesCS5D01G023500 | chr5A | 12033710 | 12034284 | 574 | False | 455.000000 | 455 | 81.431000 | 4761 | 5331 | 1 | chr5A.!!$F3 | 570 |
5 | TraesCS5D01G023500 | chr5A | 12132468 | 12135252 | 2784 | False | 363.666667 | 479 | 84.995000 | 4126 | 5354 | 3 | chr5A.!!$F6 | 1228 |
6 | TraesCS5D01G023500 | chr5B | 13721602 | 13727340 | 5738 | False | 1023.957143 | 3217 | 91.015429 | 808 | 5325 | 7 | chr5B.!!$F1 | 4517 |
7 | TraesCS5D01G023500 | chr1B | 637603679 | 637604491 | 812 | False | 1064.000000 | 1064 | 90.700000 | 1 | 801 | 1 | chr1B.!!$F2 | 800 |
8 | TraesCS5D01G023500 | chr3B | 104366883 | 104367644 | 761 | True | 600.000000 | 996 | 94.360000 | 1 | 815 | 2 | chr3B.!!$R2 | 814 |
9 | TraesCS5D01G023500 | chr7A | 623424383 | 623424897 | 514 | True | 405.000000 | 449 | 95.128000 | 1 | 558 | 2 | chr7A.!!$R2 | 557 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
214 | 219 | 0.326264 | AGCACTAGCCAGAACCAAGG | 59.674 | 55.000 | 0.00 | 0.00 | 43.56 | 3.61 | F |
675 | 706 | 1.141881 | CGTCAAGAGATGGGGGTCG | 59.858 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 | F |
676 | 707 | 1.153349 | GTCAAGAGATGGGGGTCGC | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 | F |
991 | 1028 | 1.227438 | ACTTGACGTTGGGTCCACG | 60.227 | 57.895 | 0.38 | 0.38 | 45.46 | 4.94 | F |
1478 | 1615 | 1.490574 | AGTCATCTGGCTACAGGGAC | 58.509 | 55.000 | 10.40 | 10.40 | 44.99 | 4.46 | F |
3309 | 3541 | 0.518636 | CCTGTTCAATGCACTCCGTG | 59.481 | 55.000 | 0.00 | 0.00 | 36.51 | 4.94 | F |
3700 | 3935 | 0.823356 | AGCTCTTTTTCCGCCTTGCA | 60.823 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1278 | 1326 | 1.257743 | CTGACCCTTCCACTTCGAGA | 58.742 | 55.000 | 0.00 | 0.0 | 0.00 | 4.04 | R |
1855 | 1995 | 1.680735 | CCACAAACTGTTTAGCTGCCA | 59.319 | 47.619 | 5.31 | 0.0 | 0.00 | 4.92 | R |
2315 | 2459 | 2.844122 | AAGAACGACACAAACTTGCC | 57.156 | 45.000 | 0.00 | 0.0 | 0.00 | 4.52 | R |
2540 | 2684 | 7.290014 | TGGATAATAATCACTAGAAGCCACAGA | 59.710 | 37.037 | 0.00 | 0.0 | 33.41 | 3.41 | R |
3370 | 3605 | 2.597578 | AACCCTTTAGCCATTTCGGT | 57.402 | 45.000 | 0.00 | 0.0 | 36.97 | 4.69 | R |
4429 | 6229 | 0.523072 | AAGTTTGCATGGCACTAGCG | 59.477 | 50.000 | 0.00 | 0.0 | 43.41 | 4.26 | R |
5421 | 7313 | 1.194547 | CGTGTTCACGAGGTTTGATGG | 59.805 | 52.381 | 18.64 | 0.0 | 34.64 | 3.51 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
120 | 125 | 7.206981 | TCAAAATGAATGACAGAGAAAGGAC | 57.793 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
121 | 126 | 6.207417 | TCAAAATGAATGACAGAGAAAGGACC | 59.793 | 38.462 | 0.00 | 0.00 | 0.00 | 4.46 |
122 | 127 | 4.916041 | ATGAATGACAGAGAAAGGACCA | 57.084 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
123 | 128 | 4.277515 | TGAATGACAGAGAAAGGACCAG | 57.722 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
124 | 129 | 3.903714 | TGAATGACAGAGAAAGGACCAGA | 59.096 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
125 | 130 | 4.020751 | TGAATGACAGAGAAAGGACCAGAG | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.35 |
126 | 131 | 2.964209 | TGACAGAGAAAGGACCAGAGT | 58.036 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
155 | 160 | 9.155975 | AGAACACAAAATCAGATACATGAGTAC | 57.844 | 33.333 | 0.00 | 0.00 | 31.96 | 2.73 |
157 | 162 | 6.535150 | ACACAAAATCAGATACATGAGTACGG | 59.465 | 38.462 | 0.00 | 0.00 | 31.96 | 4.02 |
210 | 215 | 4.459337 | ACAAATTAAGCACTAGCCAGAACC | 59.541 | 41.667 | 0.00 | 0.00 | 43.56 | 3.62 |
211 | 216 | 4.301072 | AATTAAGCACTAGCCAGAACCA | 57.699 | 40.909 | 0.00 | 0.00 | 43.56 | 3.67 |
212 | 217 | 3.780804 | TTAAGCACTAGCCAGAACCAA | 57.219 | 42.857 | 0.00 | 0.00 | 43.56 | 3.67 |
213 | 218 | 2.191128 | AAGCACTAGCCAGAACCAAG | 57.809 | 50.000 | 0.00 | 0.00 | 43.56 | 3.61 |
214 | 219 | 0.326264 | AGCACTAGCCAGAACCAAGG | 59.674 | 55.000 | 0.00 | 0.00 | 43.56 | 3.61 |
225 | 230 | 1.856265 | GAACCAAGGCAAGGCAGACG | 61.856 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
602 | 608 | 4.719369 | ACGCGGAGGCAGAACGAC | 62.719 | 66.667 | 12.47 | 0.00 | 39.92 | 4.34 |
629 | 635 | 2.028337 | GCGAGGAGAATCGAGGGC | 59.972 | 66.667 | 0.00 | 0.00 | 45.56 | 5.19 |
639 | 645 | 3.408853 | TCGAGGGCGAGGAGAGGA | 61.409 | 66.667 | 0.00 | 0.00 | 42.51 | 3.71 |
672 | 703 | 2.190578 | GGCGTCAAGAGATGGGGG | 59.809 | 66.667 | 0.00 | 0.00 | 0.00 | 5.40 |
673 | 704 | 2.670148 | GGCGTCAAGAGATGGGGGT | 61.670 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
674 | 705 | 1.153349 | GCGTCAAGAGATGGGGGTC | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
675 | 706 | 1.141881 | CGTCAAGAGATGGGGGTCG | 59.858 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
676 | 707 | 1.153349 | GTCAAGAGATGGGGGTCGC | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
677 | 708 | 2.202932 | CAAGAGATGGGGGTCGCG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 5.87 |
678 | 709 | 4.162690 | AAGAGATGGGGGTCGCGC | 62.163 | 66.667 | 0.00 | 0.00 | 0.00 | 6.86 |
731 | 762 | 3.976793 | TCGATCTGTTATGTACCCGTC | 57.023 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
801 | 834 | 2.915738 | CGGTTACTCGCTCTTGTAGT | 57.084 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
802 | 835 | 2.516923 | CGGTTACTCGCTCTTGTAGTG | 58.483 | 52.381 | 0.00 | 0.00 | 37.03 | 2.74 |
803 | 836 | 2.095364 | CGGTTACTCGCTCTTGTAGTGT | 60.095 | 50.000 | 0.00 | 0.00 | 37.01 | 3.55 |
804 | 837 | 3.611057 | CGGTTACTCGCTCTTGTAGTGTT | 60.611 | 47.826 | 0.00 | 0.00 | 37.01 | 3.32 |
805 | 838 | 4.304939 | GGTTACTCGCTCTTGTAGTGTTT | 58.695 | 43.478 | 0.00 | 0.00 | 37.01 | 2.83 |
806 | 839 | 5.464168 | GGTTACTCGCTCTTGTAGTGTTTA | 58.536 | 41.667 | 0.00 | 0.00 | 37.01 | 2.01 |
816 | 849 | 7.010023 | GCTCTTGTAGTGTTTAATTGTCTTCG | 58.990 | 38.462 | 0.00 | 0.00 | 0.00 | 3.79 |
840 | 873 | 1.905215 | AGCTGTGATGTAGAGCCTGTT | 59.095 | 47.619 | 0.00 | 0.00 | 46.35 | 3.16 |
851 | 885 | 8.049117 | TGATGTAGAGCCTGTTATCTGAAAATT | 58.951 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
991 | 1028 | 1.227438 | ACTTGACGTTGGGTCCACG | 60.227 | 57.895 | 0.38 | 0.38 | 45.46 | 4.94 |
1001 | 1038 | 2.207924 | GGGTCCACGAGTCCAGTGT | 61.208 | 63.158 | 0.00 | 0.00 | 37.88 | 3.55 |
1027 | 1066 | 3.056393 | ACCGAACAAATATCTCCACGTCA | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
1478 | 1615 | 1.490574 | AGTCATCTGGCTACAGGGAC | 58.509 | 55.000 | 10.40 | 10.40 | 44.99 | 4.46 |
1518 | 1655 | 6.926272 | GGGATAGAACTGCTCTGTAAATGTAG | 59.074 | 42.308 | 0.00 | 0.00 | 35.41 | 2.74 |
1580 | 1717 | 3.933332 | GACACATGGCTAGTTTCTGGTAC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 3.34 |
1635 | 1772 | 3.928754 | AGTCATCTGGCTACAGGGATAA | 58.071 | 45.455 | 0.00 | 0.00 | 44.99 | 1.75 |
1651 | 1788 | 4.603610 | AGGGATAAAGTAGGAATCATGGGG | 59.396 | 45.833 | 0.00 | 0.00 | 0.00 | 4.96 |
1659 | 1796 | 3.637821 | AGGAATCATGGGGTAGAGCTA | 57.362 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
1742 | 1879 | 4.259810 | CGTATCTTGTTACTGTGATTGCGG | 60.260 | 45.833 | 0.00 | 0.00 | 0.00 | 5.69 |
1764 | 1901 | 6.031003 | GCGGTATTACATCGATTTAAAATGCG | 59.969 | 38.462 | 8.02 | 0.00 | 0.00 | 4.73 |
1781 | 1918 | 4.717233 | ATGCGCCATGTTTCATTCTTTA | 57.283 | 36.364 | 4.18 | 0.00 | 0.00 | 1.85 |
1786 | 1923 | 4.266029 | CGCCATGTTTCATTCTTTATGCAC | 59.734 | 41.667 | 0.00 | 0.00 | 34.06 | 4.57 |
1801 | 1941 | 7.630026 | TCTTTATGCACATACTAGCAATTTCG | 58.370 | 34.615 | 0.00 | 0.00 | 44.88 | 3.46 |
1917 | 2057 | 5.221843 | TGGCTGTATTCCAGTACTGACTTTT | 60.222 | 40.000 | 24.68 | 6.71 | 43.55 | 2.27 |
1940 | 2080 | 6.091718 | TGCTATTATCGTGCCATGTAGTAA | 57.908 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
1972 | 2115 | 3.054878 | GTTGTTACCTGACGTGTACTGG | 58.945 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2130 | 2274 | 2.934553 | GCTTTACGCCCTTACCAAGTAG | 59.065 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2131 | 2275 | 3.618263 | GCTTTACGCCCTTACCAAGTAGT | 60.618 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
2132 | 2276 | 4.381932 | GCTTTACGCCCTTACCAAGTAGTA | 60.382 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
2229 | 2373 | 1.747355 | AGACAATGTGGCAGCATTAGC | 59.253 | 47.619 | 12.68 | 9.10 | 37.00 | 3.09 |
2315 | 2459 | 8.915654 | GTTTAACACAATAGAAATCTTGCAAGG | 58.084 | 33.333 | 25.73 | 9.10 | 0.00 | 3.61 |
2540 | 2684 | 9.942526 | ATATTTCCCTCTTCTATTTGTTCCATT | 57.057 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
2566 | 2717 | 7.290014 | TCTGTGGCTTCTAGTGATTATTATCCA | 59.710 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
2610 | 2767 | 3.441572 | ACTAGGCTGCATGTGAATTTGTC | 59.558 | 43.478 | 0.50 | 0.00 | 0.00 | 3.18 |
2738 | 2896 | 4.068599 | CCTCTGTTTCTTCTCCCAACTTC | 58.931 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
2795 | 2953 | 9.787435 | TTTATTTCTCCTGTACAACATAACTGT | 57.213 | 29.630 | 0.00 | 0.00 | 37.12 | 3.55 |
3015 | 3247 | 6.317857 | CAACCATTCTTTAGCAGCTTTACTC | 58.682 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3026 | 3258 | 8.539770 | TTAGCAGCTTTACTCTATGCATTATC | 57.460 | 34.615 | 3.54 | 0.00 | 39.34 | 1.75 |
3086 | 3318 | 7.766283 | TGATCATAGGCTACTATCTTGATTCG | 58.234 | 38.462 | 15.26 | 0.00 | 37.82 | 3.34 |
3087 | 3319 | 5.955488 | TCATAGGCTACTATCTTGATTCGC | 58.045 | 41.667 | 0.00 | 0.00 | 37.82 | 4.70 |
3122 | 3354 | 5.702865 | CAAATGTGATTCACCTCGTTTCAT | 58.297 | 37.500 | 14.05 | 0.00 | 32.73 | 2.57 |
3167 | 3399 | 6.713450 | CAGTCAATATCATCATTGTCATGGGA | 59.287 | 38.462 | 0.00 | 0.00 | 37.23 | 4.37 |
3208 | 3440 | 1.145571 | AGGAAGGTGGGTAGCAAACA | 58.854 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3219 | 3451 | 6.546034 | GGTGGGTAGCAAACAGATATTTACAT | 59.454 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
3237 | 3469 | 2.708861 | ACATGTTACAACTGGGACTCCA | 59.291 | 45.455 | 0.00 | 0.00 | 41.58 | 3.86 |
3246 | 3478 | 2.284995 | GGGACTCCAGGAGGCACT | 60.285 | 66.667 | 24.89 | 0.00 | 38.25 | 4.40 |
3306 | 3538 | 5.183904 | ACTTATTTCCTGTTCAATGCACTCC | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3309 | 3541 | 0.518636 | CCTGTTCAATGCACTCCGTG | 59.481 | 55.000 | 0.00 | 0.00 | 36.51 | 4.94 |
3318 | 3550 | 4.277174 | TCAATGCACTCCGTGTTATGTTTT | 59.723 | 37.500 | 0.00 | 0.00 | 35.75 | 2.43 |
3373 | 3608 | 4.692155 | AGTTTAATTTTACACCCGAGACCG | 59.308 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
3473 | 3708 | 8.718102 | TTACACATCAGACTAAAAGGCTAATC | 57.282 | 34.615 | 0.00 | 0.00 | 26.27 | 1.75 |
3506 | 3741 | 6.652481 | TCTTCTCATAGTTGAAAGCTTTGGAG | 59.348 | 38.462 | 18.30 | 10.94 | 0.00 | 3.86 |
3700 | 3935 | 0.823356 | AGCTCTTTTTCCGCCTTGCA | 60.823 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
3706 | 3941 | 3.807071 | TCTTTTTCCGCCTTGCAAAATTC | 59.193 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
3734 | 3981 | 8.693504 | GTCATTGGATAAATAAATTGCATCGTG | 58.306 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
3742 | 3989 | 1.167851 | AATTGCATCGTGTGTGAGGG | 58.832 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3769 | 4016 | 7.452880 | TTGCTGTTATATGCAATAAGGGATC | 57.547 | 36.000 | 0.00 | 0.00 | 43.17 | 3.36 |
3830 | 4077 | 5.260424 | TCTTACCCATTCAGCATGCTTTAA | 58.740 | 37.500 | 19.98 | 15.92 | 34.76 | 1.52 |
3905 | 4152 | 6.127897 | GCAGTTATTGTCTCTTTTATGTGCCT | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
3939 | 4193 | 6.333416 | TCTATGAATGACTCTTTCCTTGACG | 58.667 | 40.000 | 2.97 | 0.00 | 0.00 | 4.35 |
4073 | 4328 | 5.048434 | GGAGAGAAGATTTCAAGGTTTGGTG | 60.048 | 44.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4083 | 4338 | 8.880878 | ATTTCAAGGTTTGGTGTAATGTTTAC | 57.119 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
4183 | 4450 | 3.696051 | GGCACTGTGTTCATGGTAATGAT | 59.304 | 43.478 | 9.86 | 0.00 | 42.41 | 2.45 |
4200 | 4467 | 8.325787 | TGGTAATGATATCCAGTAAACACTGTT | 58.674 | 33.333 | 0.00 | 0.00 | 36.06 | 3.16 |
4265 | 4533 | 1.531578 | GCCCTGAGAGAACGTCAAAAC | 59.468 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
4417 | 6217 | 9.362539 | CTAATTAGAGCAATTGCATTCTTGTTT | 57.637 | 29.630 | 30.89 | 19.13 | 45.16 | 2.83 |
4418 | 6218 | 7.823149 | ATTAGAGCAATTGCATTCTTGTTTC | 57.177 | 32.000 | 30.89 | 16.33 | 45.16 | 2.78 |
4421 | 6221 | 6.618811 | AGAGCAATTGCATTCTTGTTTCTAG | 58.381 | 36.000 | 30.89 | 0.00 | 45.16 | 2.43 |
4425 | 6225 | 8.025445 | AGCAATTGCATTCTTGTTTCTAGTTAG | 58.975 | 33.333 | 30.89 | 0.00 | 45.16 | 2.34 |
4429 | 6229 | 5.106555 | TGCATTCTTGTTTCTAGTTAGCAGC | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 5.25 |
4439 | 6239 | 1.447838 | GTTAGCAGCGCTAGTGCCA | 60.448 | 57.895 | 24.25 | 0.00 | 42.34 | 4.92 |
4441 | 6241 | 0.811219 | TTAGCAGCGCTAGTGCCATG | 60.811 | 55.000 | 24.25 | 17.58 | 42.34 | 3.66 |
4560 | 6360 | 9.073475 | ACATTAACACAGCATCTAAAAGGTTAA | 57.927 | 29.630 | 0.00 | 0.00 | 34.97 | 2.01 |
4568 | 6368 | 9.780186 | ACAGCATCTAAAAGGTTAATACTATCC | 57.220 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
4642 | 6447 | 0.716108 | CAATCACGACTCAGTTCCGC | 59.284 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
4694 | 6500 | 3.584834 | CGAATATGTGGGATGCGATGTA | 58.415 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
4957 | 6805 | 3.100671 | ACTTAGCAAGAGGTGGTCCTAG | 58.899 | 50.000 | 3.37 | 0.00 | 45.24 | 3.02 |
5075 | 6933 | 2.742589 | AGCTAGCAAAACGAGGCTTTAC | 59.257 | 45.455 | 18.83 | 0.00 | 41.41 | 2.01 |
5114 | 6972 | 4.154195 | CGGCAGAAAGTTACAATAAGCACT | 59.846 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
5185 | 7043 | 7.773864 | TTGAACATTTGTACTGTTACTCGAA | 57.226 | 32.000 | 0.00 | 0.00 | 36.98 | 3.71 |
5262 | 7151 | 5.696270 | CCTTACTTATTGCATCACGATAGCA | 59.304 | 40.000 | 0.00 | 0.00 | 42.67 | 3.49 |
5421 | 7313 | 4.718961 | AGGCATTGGGAAGTATACATCAC | 58.281 | 43.478 | 10.09 | 6.91 | 0.00 | 3.06 |
5432 | 7324 | 6.483640 | GGAAGTATACATCACCATCAAACCTC | 59.516 | 42.308 | 10.09 | 0.00 | 0.00 | 3.85 |
5456 | 7349 | 1.389555 | ACACGAGACTGATATGGCGA | 58.610 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
5530 | 7423 | 1.271934 | CAGTATGAGATGAGGCTCCCG | 59.728 | 57.143 | 12.86 | 0.00 | 39.69 | 5.14 |
5559 | 7452 | 2.767505 | GGCGACCTTCTTTCTTTGAGA | 58.232 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
5584 | 7477 | 8.674263 | ACTGAAACTTCATCATCCATTCTATC | 57.326 | 34.615 | 0.00 | 0.00 | 36.46 | 2.08 |
5594 | 7487 | 4.347876 | TCATCCATTCTATCCGGTTGTGAT | 59.652 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
5631 | 7524 | 9.522804 | CTAGGACTTGTACATATTGAAGAAGAC | 57.477 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
5683 | 7675 | 1.068250 | GCATGCTACTCCCTCCGTC | 59.932 | 63.158 | 11.37 | 0.00 | 0.00 | 4.79 |
5686 | 7678 | 2.043248 | GCTACTCCCTCCGTCCCA | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
5687 | 7679 | 1.457831 | GCTACTCCCTCCGTCCCAT | 60.458 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
5694 | 7686 | 5.019657 | ACTCCCTCCGTCCCATAATATAA | 57.980 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
5696 | 7688 | 5.222484 | ACTCCCTCCGTCCCATAATATAAGA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
5697 | 7689 | 5.269991 | TCCCTCCGTCCCATAATATAAGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
5698 | 7690 | 4.141914 | CCCTCCGTCCCATAATATAAGAGC | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
5699 | 7691 | 4.440250 | CCTCCGTCCCATAATATAAGAGCG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
5701 | 7693 | 4.525487 | TCCGTCCCATAATATAAGAGCGTT | 59.475 | 41.667 | 0.00 | 0.00 | 0.00 | 4.84 |
5703 | 7695 | 5.699458 | CCGTCCCATAATATAAGAGCGTTTT | 59.301 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
5704 | 7696 | 6.204108 | CCGTCCCATAATATAAGAGCGTTTTT | 59.796 | 38.462 | 0.00 | 0.00 | 0.00 | 1.94 |
5705 | 7697 | 7.069569 | CGTCCCATAATATAAGAGCGTTTTTG | 58.930 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
5706 | 7698 | 7.042321 | CGTCCCATAATATAAGAGCGTTTTTGA | 60.042 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
5707 | 7699 | 8.068380 | GTCCCATAATATAAGAGCGTTTTTGAC | 58.932 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
5708 | 7700 | 7.771361 | TCCCATAATATAAGAGCGTTTTTGACA | 59.229 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
5709 | 7701 | 7.855904 | CCCATAATATAAGAGCGTTTTTGACAC | 59.144 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
5710 | 7702 | 8.612619 | CCATAATATAAGAGCGTTTTTGACACT | 58.387 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
5724 | 8151 | 0.810016 | GACACTACACTCCCTCCGTC | 59.190 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5725 | 8152 | 0.611340 | ACACTACACTCCCTCCGTCC | 60.611 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5727 | 8154 | 1.000019 | CTACACTCCCTCCGTCCCA | 60.000 | 63.158 | 0.00 | 0.00 | 0.00 | 4.37 |
5728 | 8155 | 0.397254 | CTACACTCCCTCCGTCCCAT | 60.397 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
5732 | 8159 | 2.090943 | ACACTCCCTCCGTCCCATAATA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
5737 | 8164 | 5.222484 | ACTCCCTCCGTCCCATAATATAAGA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
5738 | 8165 | 5.269991 | TCCCTCCGTCCCATAATATAAGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
5740 | 8245 | 4.440250 | CCTCCGTCCCATAATATAAGAGCG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
5747 | 8252 | 7.042321 | CGTCCCATAATATAAGAGCGTTTTTGA | 60.042 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
5748 | 8253 | 8.068380 | GTCCCATAATATAAGAGCGTTTTTGAC | 58.932 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
5749 | 8254 | 7.771361 | TCCCATAATATAAGAGCGTTTTTGACA | 59.229 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
5750 | 8255 | 7.855904 | CCCATAATATAAGAGCGTTTTTGACAC | 59.144 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
5758 | 8263 | 4.982916 | AGAGCGTTTTTGACACTAGTGTAG | 59.017 | 41.667 | 27.98 | 13.76 | 45.05 | 2.74 |
5772 | 8277 | 4.743644 | ACTAGTGTAGTGTCAAAAACGCTC | 59.256 | 41.667 | 0.00 | 0.00 | 45.69 | 5.03 |
5773 | 8278 | 3.793559 | AGTGTAGTGTCAAAAACGCTCT | 58.206 | 40.909 | 0.00 | 0.00 | 45.69 | 4.09 |
5774 | 8279 | 4.189231 | AGTGTAGTGTCAAAAACGCTCTT | 58.811 | 39.130 | 0.00 | 0.00 | 45.69 | 2.85 |
5775 | 8280 | 5.353938 | AGTGTAGTGTCAAAAACGCTCTTA | 58.646 | 37.500 | 0.00 | 0.00 | 45.69 | 2.10 |
5777 | 8282 | 7.149973 | AGTGTAGTGTCAAAAACGCTCTTATA | 58.850 | 34.615 | 0.00 | 0.00 | 45.69 | 0.98 |
5779 | 8284 | 8.440833 | GTGTAGTGTCAAAAACGCTCTTATATT | 58.559 | 33.333 | 0.00 | 0.00 | 45.69 | 1.28 |
5783 | 8288 | 8.612619 | AGTGTCAAAAACGCTCTTATATTATGG | 58.387 | 33.333 | 0.00 | 0.00 | 45.69 | 2.74 |
5784 | 8289 | 7.855904 | GTGTCAAAAACGCTCTTATATTATGGG | 59.144 | 37.037 | 0.00 | 0.00 | 35.42 | 4.00 |
5785 | 8290 | 7.771361 | TGTCAAAAACGCTCTTATATTATGGGA | 59.229 | 33.333 | 0.00 | 0.00 | 0.00 | 4.37 |
5786 | 8291 | 8.068380 | GTCAAAAACGCTCTTATATTATGGGAC | 58.932 | 37.037 | 0.00 | 0.00 | 0.00 | 4.46 |
5787 | 8292 | 6.780706 | AAAACGCTCTTATATTATGGGACG | 57.219 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
5788 | 8293 | 4.451629 | ACGCTCTTATATTATGGGACGG | 57.548 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
5789 | 8294 | 4.084287 | ACGCTCTTATATTATGGGACGGA | 58.916 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
5790 | 8295 | 4.158025 | ACGCTCTTATATTATGGGACGGAG | 59.842 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
5791 | 8296 | 4.440250 | CGCTCTTATATTATGGGACGGAGG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5792 | 8297 | 4.141914 | GCTCTTATATTATGGGACGGAGGG | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5793 | 8298 | 5.269991 | CTCTTATATTATGGGACGGAGGGA | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
5794 | 8299 | 5.269991 | TCTTATATTATGGGACGGAGGGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
5795 | 8300 | 3.562108 | ATATTATGGGACGGAGGGAGT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
5848 | 8353 | 7.237055 | GGGGTATCCAAGTTATAAGAGTATGGT | 59.763 | 40.741 | 0.00 | 0.00 | 35.00 | 3.55 |
5885 | 8390 | 0.324943 | TAAGAAGAGTGTGCTGGCCC | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
6029 | 8534 | 0.739813 | CTGCGGTTTTACTCCCCTCG | 60.740 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
6038 | 8543 | 2.307496 | TACTCCCCTCGTACACCAAA | 57.693 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
6039 | 8544 | 1.652947 | ACTCCCCTCGTACACCAAAT | 58.347 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
6041 | 8546 | 2.290071 | ACTCCCCTCGTACACCAAATTG | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
6043 | 8548 | 2.081462 | CCCCTCGTACACCAAATTGTC | 58.919 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
6044 | 8549 | 1.730064 | CCCTCGTACACCAAATTGTCG | 59.270 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
6045 | 8550 | 2.409975 | CCTCGTACACCAAATTGTCGT | 58.590 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
6047 | 8552 | 3.120786 | CCTCGTACACCAAATTGTCGTTC | 60.121 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
6048 | 8553 | 3.455327 | TCGTACACCAAATTGTCGTTCA | 58.545 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
6049 | 8554 | 3.245754 | TCGTACACCAAATTGTCGTTCAC | 59.754 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
6050 | 8555 | 3.001431 | CGTACACCAAATTGTCGTTCACA | 59.999 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
6051 | 8556 | 3.691049 | ACACCAAATTGTCGTTCACAG | 57.309 | 42.857 | 0.00 | 0.00 | 35.97 | 3.66 |
6053 | 8558 | 4.193090 | ACACCAAATTGTCGTTCACAGTA | 58.807 | 39.130 | 0.00 | 0.00 | 35.97 | 2.74 |
6054 | 8559 | 4.034742 | ACACCAAATTGTCGTTCACAGTAC | 59.965 | 41.667 | 0.00 | 0.00 | 35.97 | 2.73 |
6056 | 8561 | 3.491639 | CCAAATTGTCGTTCACAGTACGA | 59.508 | 43.478 | 0.00 | 0.00 | 44.88 | 3.43 |
6066 | 8590 | 4.031314 | CGTTCACAGTACGAACCATACATG | 59.969 | 45.833 | 6.56 | 0.00 | 41.33 | 3.21 |
6071 | 8595 | 2.500098 | AGTACGAACCATACATGCCACT | 59.500 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
6080 | 8604 | 9.594478 | CGAACCATACATGCCACTAATATATAA | 57.406 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
6134 | 8658 | 8.356657 | TGGTATCGATTTTCTTGACACATTTTT | 58.643 | 29.630 | 1.71 | 0.00 | 0.00 | 1.94 |
6171 | 8695 | 1.532868 | CTCTCCAAGCCAAAAGACACG | 59.467 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
6178 | 8702 | 1.071699 | AGCCAAAAGACACGGAGCTAA | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.09 |
6189 | 8713 | 5.080969 | ACACGGAGCTAAGCTTTTACATA | 57.919 | 39.130 | 3.20 | 0.00 | 39.88 | 2.29 |
6198 | 8722 | 9.712305 | GAGCTAAGCTTTTACATAGATTCCATA | 57.288 | 33.333 | 3.20 | 0.00 | 39.88 | 2.74 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 9.573166 | CTATGATTTTGTATTACCTGGATGGAA | 57.427 | 33.333 | 0.00 | 0.00 | 39.71 | 3.53 |
120 | 125 | 4.136796 | TGATTTTGTGTTCTGGACTCTGG | 58.863 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
121 | 126 | 5.059161 | TCTGATTTTGTGTTCTGGACTCTG | 58.941 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
122 | 127 | 5.296151 | TCTGATTTTGTGTTCTGGACTCT | 57.704 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
123 | 128 | 6.650807 | TGTATCTGATTTTGTGTTCTGGACTC | 59.349 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
124 | 129 | 6.533730 | TGTATCTGATTTTGTGTTCTGGACT | 58.466 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
125 | 130 | 6.801539 | TGTATCTGATTTTGTGTTCTGGAC | 57.198 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
126 | 131 | 7.167535 | TCATGTATCTGATTTTGTGTTCTGGA | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
155 | 160 | 1.205655 | TCATGACTGAAGAAGCCTCCG | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
157 | 162 | 4.505922 | CGTATTCATGACTGAAGAAGCCTC | 59.494 | 45.833 | 0.00 | 0.00 | 44.32 | 4.70 |
210 | 215 | 1.165907 | TGAACGTCTGCCTTGCCTTG | 61.166 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
211 | 216 | 0.886490 | CTGAACGTCTGCCTTGCCTT | 60.886 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
212 | 217 | 1.302033 | CTGAACGTCTGCCTTGCCT | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
213 | 218 | 1.294659 | CTCTGAACGTCTGCCTTGCC | 61.295 | 60.000 | 0.00 | 0.00 | 0.00 | 4.52 |
214 | 219 | 0.319900 | TCTCTGAACGTCTGCCTTGC | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
225 | 230 | 2.681848 | CTGGCCATGAACATCTCTGAAC | 59.318 | 50.000 | 5.51 | 0.00 | 0.00 | 3.18 |
661 | 692 | 4.162690 | GCGCGACCCCCATCTCTT | 62.163 | 66.667 | 12.10 | 0.00 | 0.00 | 2.85 |
762 | 793 | 1.265905 | GCGATGTCCACGTTCCTTTTT | 59.734 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
801 | 834 | 5.761234 | ACAGCTAACCGAAGACAATTAAACA | 59.239 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
802 | 835 | 6.073440 | TCACAGCTAACCGAAGACAATTAAAC | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
803 | 836 | 5.992829 | TCACAGCTAACCGAAGACAATTAAA | 59.007 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
804 | 837 | 5.543714 | TCACAGCTAACCGAAGACAATTAA | 58.456 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
805 | 838 | 5.142061 | TCACAGCTAACCGAAGACAATTA | 57.858 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
806 | 839 | 4.002906 | TCACAGCTAACCGAAGACAATT | 57.997 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
816 | 849 | 2.432510 | AGGCTCTACATCACAGCTAACC | 59.567 | 50.000 | 0.00 | 0.00 | 33.38 | 2.85 |
876 | 910 | 7.864882 | TGAAATGTGCTCAAATTTCGAATACAA | 59.135 | 29.630 | 16.42 | 0.42 | 42.93 | 2.41 |
879 | 913 | 8.698854 | GTTTGAAATGTGCTCAAATTTCGAATA | 58.301 | 29.630 | 21.87 | 7.05 | 43.22 | 1.75 |
991 | 1028 | 1.521450 | TTCGGTCGGACACTGGACTC | 61.521 | 60.000 | 10.76 | 0.00 | 33.70 | 3.36 |
1001 | 1038 | 2.761767 | TGGAGATATTTGTTCGGTCGGA | 59.238 | 45.455 | 0.00 | 0.00 | 0.00 | 4.55 |
1027 | 1066 | 4.824515 | AGGCGAGGCGAGCTACCT | 62.825 | 66.667 | 7.50 | 7.50 | 41.41 | 3.08 |
1138 | 1186 | 3.706373 | GCTGGAGGAGGCGTGGAA | 61.706 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
1278 | 1326 | 1.257743 | CTGACCCTTCCACTTCGAGA | 58.742 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1370 | 1420 | 2.568956 | TGATACAGAAGCAGAGCAGGTT | 59.431 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
1478 | 1615 | 5.752036 | TCTATCCCATAATTCCTGCTCTG | 57.248 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
1518 | 1655 | 5.612725 | TGGGGATAATTCCTGCATTTTTC | 57.387 | 39.130 | 0.00 | 0.00 | 42.20 | 2.29 |
1539 | 1676 | 5.991606 | TGTGTCCAGAAACTAGTCTTCAATG | 59.008 | 40.000 | 15.53 | 8.90 | 0.00 | 2.82 |
1543 | 1680 | 4.932200 | CCATGTGTCCAGAAACTAGTCTTC | 59.068 | 45.833 | 0.00 | 2.91 | 0.00 | 2.87 |
1597 | 1734 | 4.202245 | TGACTAGATGGGTAACAGCAAC | 57.798 | 45.455 | 0.00 | 0.00 | 38.15 | 4.17 |
1635 | 1772 | 3.648545 | GCTCTACCCCATGATTCCTACTT | 59.351 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
1651 | 1788 | 8.665643 | TCTCTACATTTACAGAGTAGCTCTAC | 57.334 | 38.462 | 0.00 | 0.00 | 38.99 | 2.59 |
1659 | 1796 | 6.820656 | CCTGCATTTCTCTACATTTACAGAGT | 59.179 | 38.462 | 0.00 | 0.00 | 39.48 | 3.24 |
1742 | 1879 | 6.853872 | TGGCGCATTTTAAATCGATGTAATAC | 59.146 | 34.615 | 10.83 | 0.00 | 0.00 | 1.89 |
1764 | 1901 | 5.170021 | TGTGCATAAAGAATGAAACATGGC | 58.830 | 37.500 | 0.00 | 0.00 | 37.86 | 4.40 |
1781 | 1918 | 3.627123 | TGCGAAATTGCTAGTATGTGCAT | 59.373 | 39.130 | 0.00 | 0.00 | 39.07 | 3.96 |
1786 | 1923 | 6.233430 | AGCTAATGCGAAATTGCTAGTATG | 57.767 | 37.500 | 0.00 | 0.00 | 45.42 | 2.39 |
1801 | 1941 | 4.818546 | TCCTCAGCAGAATAAAGCTAATGC | 59.181 | 41.667 | 0.00 | 0.00 | 39.50 | 3.56 |
1855 | 1995 | 1.680735 | CCACAAACTGTTTAGCTGCCA | 59.319 | 47.619 | 5.31 | 0.00 | 0.00 | 4.92 |
1917 | 2057 | 4.600692 | ACTACATGGCACGATAATAGCA | 57.399 | 40.909 | 0.00 | 0.00 | 0.00 | 3.49 |
1940 | 2080 | 6.316890 | ACGTCAGGTAACAACAAACAAGTTAT | 59.683 | 34.615 | 0.00 | 0.00 | 41.41 | 1.89 |
1972 | 2115 | 5.648092 | AGCACAAAAGGGACATACAGATTAC | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2113 | 2257 | 3.968265 | AGTACTACTTGGTAAGGGCGTA | 58.032 | 45.455 | 0.00 | 0.00 | 0.00 | 4.42 |
2167 | 2311 | 4.099881 | ACTTAAATGTTGGCATGGCATAGG | 59.900 | 41.667 | 23.96 | 14.17 | 35.15 | 2.57 |
2251 | 2395 | 7.227512 | CAGGTTTGATTCTACAGAGAACAGTTT | 59.772 | 37.037 | 0.00 | 0.00 | 44.50 | 2.66 |
2315 | 2459 | 2.844122 | AAGAACGACACAAACTTGCC | 57.156 | 45.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2540 | 2684 | 7.290014 | TGGATAATAATCACTAGAAGCCACAGA | 59.710 | 37.037 | 0.00 | 0.00 | 33.41 | 3.41 |
2566 | 2717 | 9.449719 | CTAGTCCAAACATGTTTATAAAGGAGT | 57.550 | 33.333 | 26.02 | 26.02 | 31.98 | 3.85 |
2813 | 2979 | 8.650143 | AAAATGTAATTAGTCAGGTCCACAAT | 57.350 | 30.769 | 0.00 | 0.00 | 33.67 | 2.71 |
3026 | 3258 | 5.243981 | CCAGGCTGGTGATATTTCTAGATG | 58.756 | 45.833 | 25.74 | 0.00 | 31.35 | 2.90 |
3086 | 3318 | 7.531534 | GTGAATCACATTTGCAAATTTTAGTGC | 59.468 | 33.333 | 24.77 | 16.32 | 36.48 | 4.40 |
3087 | 3319 | 8.011106 | GGTGAATCACATTTGCAAATTTTAGTG | 58.989 | 33.333 | 24.09 | 24.09 | 35.86 | 2.74 |
3159 | 3391 | 9.442047 | CAGAACTAAGGATAATATTCCCATGAC | 57.558 | 37.037 | 0.00 | 0.00 | 36.35 | 3.06 |
3208 | 3440 | 8.548877 | AGTCCCAGTTGTAACATGTAAATATCT | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
3237 | 3469 | 7.092399 | GGGTATTATATAAATCCAGTGCCTCCT | 60.092 | 40.741 | 16.09 | 0.00 | 0.00 | 3.69 |
3239 | 3471 | 7.862675 | AGGGTATTATATAAATCCAGTGCCTC | 58.137 | 38.462 | 16.09 | 2.50 | 0.00 | 4.70 |
3370 | 3605 | 2.597578 | AACCCTTTAGCCATTTCGGT | 57.402 | 45.000 | 0.00 | 0.00 | 36.97 | 4.69 |
3373 | 3608 | 4.082190 | GGACAGAAACCCTTTAGCCATTTC | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
3454 | 3689 | 5.615925 | ACCGATTAGCCTTTTAGTCTGAT | 57.384 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
3455 | 3690 | 5.416271 | AACCGATTAGCCTTTTAGTCTGA | 57.584 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
3473 | 3708 | 7.905493 | GCTTTCAACTATGAGAAGAATAAACCG | 59.095 | 37.037 | 0.00 | 0.00 | 36.78 | 4.44 |
3706 | 3941 | 7.060979 | CGATGCAATTTATTTATCCAATGACGG | 59.939 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
3734 | 3981 | 1.975660 | TAACAGCAAACCCCTCACAC | 58.024 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3795 | 4042 | 5.048083 | TGAATGGGTAAGAACATGCAGAAAC | 60.048 | 40.000 | 0.00 | 0.00 | 29.45 | 2.78 |
3905 | 4152 | 6.233434 | AGAGTCATTCATAGAGCAAACACAA | 58.767 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4036 | 4291 | 5.028549 | TCTTCTCTCCATTTCTGCCATAC | 57.971 | 43.478 | 0.00 | 0.00 | 0.00 | 2.39 |
4109 | 4366 | 3.831911 | GACATGGAAAACAATTCTCCCCA | 59.168 | 43.478 | 0.00 | 0.00 | 0.00 | 4.96 |
4200 | 4467 | 3.795150 | GCAGTGCGAAAAGAAATCCACAA | 60.795 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
4265 | 4533 | 6.265422 | ACCTCCTCTTTTCCAACAATGTTTAG | 59.735 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
4417 | 6217 | 1.065701 | GCACTAGCGCTGCTAACTAGA | 59.934 | 52.381 | 22.90 | 0.00 | 40.82 | 2.43 |
4418 | 6218 | 1.482278 | GCACTAGCGCTGCTAACTAG | 58.518 | 55.000 | 22.90 | 10.14 | 40.82 | 2.57 |
4421 | 6221 | 0.811616 | ATGGCACTAGCGCTGCTAAC | 60.812 | 55.000 | 22.90 | 8.26 | 40.82 | 2.34 |
4425 | 6225 | 4.247612 | GCATGGCACTAGCGCTGC | 62.248 | 66.667 | 22.90 | 16.49 | 43.41 | 5.25 |
4429 | 6229 | 0.523072 | AAGTTTGCATGGCACTAGCG | 59.477 | 50.000 | 0.00 | 0.00 | 43.41 | 4.26 |
4560 | 6360 | 4.737855 | ATGCTTAATCCGCGGATAGTAT | 57.262 | 40.909 | 39.08 | 31.79 | 33.97 | 2.12 |
4568 | 6368 | 5.108254 | GCAAGAAAATAATGCTTAATCCGCG | 60.108 | 40.000 | 0.00 | 0.00 | 37.12 | 6.46 |
4642 | 6447 | 1.457303 | GCAGCGTGGCTATTATCTTCG | 59.543 | 52.381 | 0.00 | 0.00 | 36.40 | 3.79 |
4694 | 6500 | 2.226437 | CGCTACAAGGATGCAGTTTTGT | 59.774 | 45.455 | 14.39 | 14.39 | 37.51 | 2.83 |
4957 | 6805 | 5.941647 | TCCAATGCCTAGTTTACAAAGGTAC | 59.058 | 40.000 | 0.00 | 0.00 | 32.67 | 3.34 |
5075 | 6933 | 1.280746 | CCGCAAGCTCGGCATTATG | 59.719 | 57.895 | 10.51 | 0.00 | 43.18 | 1.90 |
5185 | 7043 | 4.002906 | TGAAGGCATAGAACAAACTCGT | 57.997 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
5198 | 7068 | 8.371571 | TCAGTCAGATGTATATATGAAGGCAT | 57.628 | 34.615 | 0.00 | 0.00 | 36.39 | 4.40 |
5262 | 7151 | 2.249743 | ACAGGGAAGATCCAGATCCTCT | 59.750 | 50.000 | 4.01 | 0.00 | 38.64 | 3.69 |
5421 | 7313 | 1.194547 | CGTGTTCACGAGGTTTGATGG | 59.805 | 52.381 | 18.64 | 0.00 | 34.64 | 3.51 |
5432 | 7324 | 3.108881 | CCATATCAGTCTCGTGTTCACG | 58.891 | 50.000 | 17.57 | 17.57 | 0.00 | 4.35 |
5543 | 7436 | 6.418946 | AGTTTCAGTCTCAAAGAAAGAAGGT | 58.581 | 36.000 | 0.00 | 0.00 | 32.48 | 3.50 |
5545 | 7438 | 7.978982 | TGAAGTTTCAGTCTCAAAGAAAGAAG | 58.021 | 34.615 | 0.00 | 0.00 | 32.48 | 2.85 |
5558 | 7451 | 6.998968 | AGAATGGATGATGAAGTTTCAGTC | 57.001 | 37.500 | 0.74 | 0.00 | 41.08 | 3.51 |
5559 | 7452 | 7.718753 | GGATAGAATGGATGATGAAGTTTCAGT | 59.281 | 37.037 | 0.74 | 0.00 | 41.08 | 3.41 |
5584 | 7477 | 2.504367 | GGGGATATGAATCACAACCGG | 58.496 | 52.381 | 0.00 | 0.00 | 37.25 | 5.28 |
5631 | 7524 | 6.329496 | ACCCATGCAATTACGAATAAACAAG | 58.671 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5640 | 7535 | 2.942376 | CTGCTAACCCATGCAATTACGA | 59.058 | 45.455 | 0.00 | 0.00 | 38.81 | 3.43 |
5683 | 7675 | 7.855904 | GTGTCAAAAACGCTCTTATATTATGGG | 59.144 | 37.037 | 0.00 | 0.00 | 35.42 | 4.00 |
5687 | 7679 | 9.642327 | TGTAGTGTCAAAAACGCTCTTATATTA | 57.358 | 29.630 | 0.00 | 0.00 | 45.69 | 0.98 |
5694 | 7686 | 3.793559 | AGTGTAGTGTCAAAAACGCTCT | 58.206 | 40.909 | 0.00 | 0.00 | 45.69 | 4.09 |
5697 | 7689 | 2.032290 | GGGAGTGTAGTGTCAAAAACGC | 60.032 | 50.000 | 0.00 | 0.00 | 38.74 | 4.84 |
5698 | 7690 | 3.463944 | AGGGAGTGTAGTGTCAAAAACG | 58.536 | 45.455 | 0.00 | 0.00 | 0.00 | 3.60 |
5699 | 7691 | 3.813724 | GGAGGGAGTGTAGTGTCAAAAAC | 59.186 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
5701 | 7693 | 2.036733 | CGGAGGGAGTGTAGTGTCAAAA | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5703 | 7695 | 1.254026 | CGGAGGGAGTGTAGTGTCAA | 58.746 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5704 | 7696 | 0.111832 | ACGGAGGGAGTGTAGTGTCA | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
5705 | 7697 | 0.810016 | GACGGAGGGAGTGTAGTGTC | 59.190 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5706 | 7698 | 0.611340 | GGACGGAGGGAGTGTAGTGT | 60.611 | 60.000 | 0.00 | 0.00 | 0.00 | 3.55 |
5707 | 7699 | 1.321074 | GGGACGGAGGGAGTGTAGTG | 61.321 | 65.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5708 | 7700 | 1.000107 | GGGACGGAGGGAGTGTAGT | 60.000 | 63.158 | 0.00 | 0.00 | 0.00 | 2.73 |
5709 | 7701 | 0.397254 | ATGGGACGGAGGGAGTGTAG | 60.397 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5710 | 7702 | 0.928505 | TATGGGACGGAGGGAGTGTA | 59.071 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5711 | 7703 | 0.042131 | TTATGGGACGGAGGGAGTGT | 59.958 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
5712 | 7704 | 1.424638 | ATTATGGGACGGAGGGAGTG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5724 | 8151 | 7.855904 | GTGTCAAAAACGCTCTTATATTATGGG | 59.144 | 37.037 | 0.00 | 0.00 | 35.42 | 4.00 |
5725 | 8152 | 8.612619 | AGTGTCAAAAACGCTCTTATATTATGG | 58.387 | 33.333 | 0.00 | 0.00 | 45.69 | 2.74 |
5728 | 8155 | 9.865321 | ACTAGTGTCAAAAACGCTCTTATATTA | 57.135 | 29.630 | 0.00 | 0.00 | 45.69 | 0.98 |
5732 | 8159 | 5.989777 | ACACTAGTGTCAAAAACGCTCTTAT | 59.010 | 36.000 | 22.95 | 0.00 | 45.69 | 1.73 |
5749 | 8254 | 4.690122 | AGCGTTTTTGACACTACACTAGT | 58.310 | 39.130 | 0.00 | 0.00 | 40.28 | 2.57 |
5750 | 8255 | 4.982916 | AGAGCGTTTTTGACACTACACTAG | 59.017 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
5753 | 8258 | 4.531659 | AAGAGCGTTTTTGACACTACAC | 57.468 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
5758 | 8263 | 7.855904 | CCCATAATATAAGAGCGTTTTTGACAC | 59.144 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
5760 | 8265 | 8.068380 | GTCCCATAATATAAGAGCGTTTTTGAC | 58.932 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
5763 | 8268 | 6.204108 | CCGTCCCATAATATAAGAGCGTTTTT | 59.796 | 38.462 | 0.00 | 0.00 | 0.00 | 1.94 |
5767 | 8272 | 4.084287 | TCCGTCCCATAATATAAGAGCGT | 58.916 | 43.478 | 0.00 | 0.00 | 0.00 | 5.07 |
5768 | 8273 | 4.440250 | CCTCCGTCCCATAATATAAGAGCG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
5769 | 8274 | 4.141914 | CCCTCCGTCCCATAATATAAGAGC | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
5770 | 8275 | 5.269991 | TCCCTCCGTCCCATAATATAAGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
5771 | 8276 | 5.222484 | ACTCCCTCCGTCCCATAATATAAGA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
5772 | 8277 | 5.024118 | ACTCCCTCCGTCCCATAATATAAG | 58.976 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
5773 | 8278 | 5.019657 | ACTCCCTCCGTCCCATAATATAA | 57.980 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
5774 | 8279 | 4.687262 | ACTCCCTCCGTCCCATAATATA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
5775 | 8280 | 3.562108 | ACTCCCTCCGTCCCATAATAT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
5777 | 8282 | 3.339713 | TTACTCCCTCCGTCCCATAAT | 57.660 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
5779 | 8284 | 2.852714 | TTTACTCCCTCCGTCCCATA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5781 | 8286 | 1.273381 | TGATTTACTCCCTCCGTCCCA | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
5782 | 8287 | 1.492764 | TGATTTACTCCCTCCGTCCC | 58.507 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
5783 | 8288 | 4.629092 | GTTATGATTTACTCCCTCCGTCC | 58.371 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
5784 | 8289 | 4.202090 | ACGTTATGATTTACTCCCTCCGTC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
5785 | 8290 | 3.703052 | ACGTTATGATTTACTCCCTCCGT | 59.297 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
5786 | 8291 | 4.049186 | CACGTTATGATTTACTCCCTCCG | 58.951 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
5787 | 8292 | 3.808174 | GCACGTTATGATTTACTCCCTCC | 59.192 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
5788 | 8293 | 3.808174 | GGCACGTTATGATTTACTCCCTC | 59.192 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
5789 | 8294 | 3.454812 | AGGCACGTTATGATTTACTCCCT | 59.545 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
5790 | 8295 | 3.805207 | AGGCACGTTATGATTTACTCCC | 58.195 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
5791 | 8296 | 5.813080 | AAAGGCACGTTATGATTTACTCC | 57.187 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
5792 | 8297 | 7.225931 | TGGATAAAGGCACGTTATGATTTACTC | 59.774 | 37.037 | 0.00 | 0.00 | 42.61 | 2.59 |
5793 | 8298 | 7.051623 | TGGATAAAGGCACGTTATGATTTACT | 58.948 | 34.615 | 0.00 | 0.00 | 42.61 | 2.24 |
5794 | 8299 | 7.254227 | TGGATAAAGGCACGTTATGATTTAC | 57.746 | 36.000 | 0.00 | 0.00 | 42.61 | 2.01 |
5795 | 8300 | 7.867305 | TTGGATAAAGGCACGTTATGATTTA | 57.133 | 32.000 | 0.00 | 0.00 | 42.61 | 1.40 |
5857 | 8362 | 7.201767 | GCCAGCACACTCTTCTTAAATATGATT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
5858 | 8363 | 6.261826 | GCCAGCACACTCTTCTTAAATATGAT | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 2.45 |
5919 | 8424 | 3.760151 | ACAGACACATGCATAGCACAAAT | 59.240 | 39.130 | 0.00 | 0.00 | 43.04 | 2.32 |
5923 | 8428 | 2.349590 | TGACAGACACATGCATAGCAC | 58.650 | 47.619 | 0.00 | 0.00 | 43.04 | 4.40 |
6011 | 8516 | 1.294138 | CGAGGGGAGTAAAACCGCA | 59.706 | 57.895 | 0.00 | 0.00 | 41.77 | 5.69 |
6029 | 8534 | 4.034742 | ACTGTGAACGACAATTTGGTGTAC | 59.965 | 41.667 | 0.78 | 0.00 | 32.80 | 2.90 |
6043 | 8548 | 3.567530 | TGTATGGTTCGTACTGTGAACG | 58.432 | 45.455 | 6.18 | 1.60 | 45.19 | 3.95 |
6044 | 8549 | 4.201685 | GCATGTATGGTTCGTACTGTGAAC | 60.202 | 45.833 | 0.00 | 4.15 | 43.87 | 3.18 |
6045 | 8550 | 3.930229 | GCATGTATGGTTCGTACTGTGAA | 59.070 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
6047 | 8552 | 2.607635 | GGCATGTATGGTTCGTACTGTG | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
6048 | 8553 | 2.235155 | TGGCATGTATGGTTCGTACTGT | 59.765 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
6049 | 8554 | 2.607635 | GTGGCATGTATGGTTCGTACTG | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6050 | 8555 | 2.500098 | AGTGGCATGTATGGTTCGTACT | 59.500 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
6051 | 8556 | 2.901249 | AGTGGCATGTATGGTTCGTAC | 58.099 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
6053 | 8558 | 3.620427 | TTAGTGGCATGTATGGTTCGT | 57.380 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
6054 | 8559 | 9.594478 | TTATATATTAGTGGCATGTATGGTTCG | 57.406 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
6080 | 8604 | 7.951347 | ATGAGAAGGAGCACTGAAAAATATT | 57.049 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
6084 | 8608 | 7.500227 | CCATATATGAGAAGGAGCACTGAAAAA | 59.500 | 37.037 | 14.54 | 0.00 | 0.00 | 1.94 |
6090 | 8614 | 6.096141 | CGATACCATATATGAGAAGGAGCACT | 59.904 | 42.308 | 14.54 | 0.00 | 0.00 | 4.40 |
6134 | 8658 | 4.080582 | TGGAGAGTGTGTTTGAGGAAAAGA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
6171 | 8695 | 6.992715 | TGGAATCTATGTAAAAGCTTAGCTCC | 59.007 | 38.462 | 7.36 | 0.00 | 38.25 | 4.70 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.