Multiple sequence alignment - TraesCS5D01G020800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G020800 chr5D 100.000 4828 0 0 1 4828 13714569 13719396 0.000000e+00 8916.0
1 TraesCS5D01G020800 chr5D 97.790 181 4 0 803 983 13715194 13715374 3.630000e-81 313.0
2 TraesCS5D01G020800 chr5D 97.790 181 4 0 626 806 13715371 13715551 3.630000e-81 313.0
3 TraesCS5D01G020800 chr5B 88.700 2062 141 33 1723 3748 13176057 13178062 0.000000e+00 2433.0
4 TraesCS5D01G020800 chr5B 90.236 891 56 18 824 1702 13175017 13175888 0.000000e+00 1134.0
5 TraesCS5D01G020800 chr5B 86.330 812 34 38 4040 4820 13178479 13179244 0.000000e+00 813.0
6 TraesCS5D01G020800 chr5B 87.342 158 18 1 2196 2351 13176811 13176968 3.840000e-41 180.0
7 TraesCS5D01G020800 chr5B 94.444 36 1 1 1545 1580 13175683 13175717 2.000000e-03 54.7
8 TraesCS5D01G020800 chr5A 81.945 1573 209 42 803 2351 10477017 10478538 0.000000e+00 1262.0
9 TraesCS5D01G020800 chr5A 91.482 857 33 20 3989 4828 10480073 10480906 0.000000e+00 1142.0
10 TraesCS5D01G020800 chr5A 91.895 802 63 1 7 806 10476396 10477197 0.000000e+00 1120.0
11 TraesCS5D01G020800 chr5A 82.243 1284 137 51 2579 3817 10478616 10479853 0.000000e+00 1024.0
12 TraesCS5D01G020800 chr1D 82.519 1167 127 44 2580 3719 481332081 481330965 0.000000e+00 953.0
13 TraesCS5D01G020800 chr1D 85.849 636 56 15 827 1447 481332714 481332098 0.000000e+00 645.0
14 TraesCS5D01G020800 chr1D 89.595 173 16 2 473 644 250738615 250738444 8.140000e-53 219.0
15 TraesCS5D01G020800 chr1A 85.356 758 86 13 2580 3321 577761833 577761085 0.000000e+00 761.0
16 TraesCS5D01G020800 chr1A 85.150 633 61 16 827 1445 577762465 577761852 6.870000e-173 617.0
17 TraesCS5D01G020800 chr1A 93.333 180 10 2 3539 3717 577760902 577760724 1.030000e-66 265.0
18 TraesCS5D01G020800 chr1B 84.945 724 86 16 2617 3321 669706612 669705893 0.000000e+00 712.0
19 TraesCS5D01G020800 chr1B 83.713 614 58 17 827 1419 669707238 669706646 4.250000e-150 542.0
20 TraesCS5D01G020800 chr1B 88.696 230 16 7 3539 3762 669705767 669705542 6.160000e-69 272.0
21 TraesCS5D01G020800 chr2D 88.720 328 18 11 3989 4311 563484234 563484547 2.730000e-102 383.0
22 TraesCS5D01G020800 chr2D 90.857 175 14 2 471 644 342099807 342099634 2.910000e-57 233.0
23 TraesCS5D01G020800 chr2D 91.228 171 14 1 470 640 147232643 147232812 1.050000e-56 231.0
24 TraesCS5D01G020800 chr3B 86.890 328 24 9 3989 4311 633432167 633432480 2.770000e-92 350.0
25 TraesCS5D01G020800 chr7A 86.607 336 18 14 3989 4311 273017129 273016808 3.580000e-91 346.0
26 TraesCS5D01G020800 chr2A 86.310 336 19 13 3989 4311 312626767 312626446 1.660000e-89 340.0
27 TraesCS5D01G020800 chr2A 90.857 175 11 2 470 640 155591085 155590912 3.760000e-56 230.0
28 TraesCS5D01G020800 chr4A 79.500 400 60 16 4432 4828 595359726 595360106 1.030000e-66 265.0
29 TraesCS5D01G020800 chr4A 89.773 176 13 4 472 644 580298872 580299045 2.260000e-53 220.0
30 TraesCS5D01G020800 chr4D 79.653 403 51 24 4450 4828 7911666 7911271 1.330000e-65 261.0
31 TraesCS5D01G020800 chr2B 90.643 171 15 1 470 640 206754370 206754539 4.860000e-55 226.0
32 TraesCS5D01G020800 chr2B 89.714 175 16 2 471 644 407236350 407236177 6.290000e-54 222.0
33 TraesCS5D01G020800 chr4B 88.333 180 20 1 462 641 285616742 285616564 1.050000e-51 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G020800 chr5D 13714569 13719396 4827 False 8916.000000 8916 100.000000 1 4828 1 chr5D.!!$F1 4827
1 TraesCS5D01G020800 chr5B 13175017 13179244 4227 False 922.940000 2433 89.410400 824 4820 5 chr5B.!!$F1 3996
2 TraesCS5D01G020800 chr5A 10476396 10480906 4510 False 1137.000000 1262 86.891250 7 4828 4 chr5A.!!$F1 4821
3 TraesCS5D01G020800 chr1D 481330965 481332714 1749 True 799.000000 953 84.184000 827 3719 2 chr1D.!!$R2 2892
4 TraesCS5D01G020800 chr1A 577760724 577762465 1741 True 547.666667 761 87.946333 827 3717 3 chr1A.!!$R1 2890
5 TraesCS5D01G020800 chr1B 669705542 669707238 1696 True 508.666667 712 85.784667 827 3762 3 chr1B.!!$R1 2935

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 874 0.039888 CCGGTTCCGAACGCAATTTT 60.040 50.0 13.08 0.00 0.0 1.82 F
1949 2187 0.033504 TCAACTGAAGGTGGTCGAGC 59.966 55.0 7.89 7.89 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 2879 0.535335 CCATCCATGCAGCTTGCTTT 59.465 50.0 2.63 0.0 45.31 3.51 R
3841 4217 0.176910 TTCACAACTGACACGGAGCA 59.823 50.0 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.101430 ACCAATTTTCAGCTGTCCATTGTT 59.899 37.500 14.67 6.22 0.00 2.83
86 87 1.078426 GGGCAGGCTCGTGTGTTAT 60.078 57.895 0.00 0.00 0.00 1.89
88 89 1.287425 GGCAGGCTCGTGTGTTATAC 58.713 55.000 0.00 0.00 0.00 1.47
92 93 1.197910 GGCTCGTGTGTTATACTCGC 58.802 55.000 0.00 0.00 43.77 5.03
106 107 0.322997 ACTCGCTAGTGTCTGAGGCT 60.323 55.000 2.66 0.00 33.57 4.58
109 110 0.457509 CGCTAGTGTCTGAGGCTGTG 60.458 60.000 0.00 0.00 0.00 3.66
112 113 0.831711 TAGTGTCTGAGGCTGTGGCA 60.832 55.000 0.00 0.00 40.87 4.92
146 147 7.807977 ATCCATGTCCACATTTTAGATGTAC 57.192 36.000 0.00 0.00 33.61 2.90
168 171 3.771577 CTTGGTGAAAGTAGAGGGTGT 57.228 47.619 0.00 0.00 0.00 4.16
171 174 2.367567 TGGTGAAAGTAGAGGGTGTCAC 59.632 50.000 0.00 0.00 35.69 3.67
190 193 3.934579 TCACAGCAGTGTATATGCAACTG 59.065 43.478 9.25 10.51 46.31 3.16
224 227 1.747355 CATGCTTGCTGAAAGTAGGGG 59.253 52.381 0.00 0.00 38.25 4.79
228 231 1.541588 CTTGCTGAAAGTAGGGGCAAC 59.458 52.381 0.00 0.00 37.87 4.17
242 245 0.588252 GGCAACGGCATAGCAGTATG 59.412 55.000 0.00 0.00 43.71 2.39
260 263 1.655484 TGTGCATGTGCGGATCTTAG 58.345 50.000 0.00 0.00 45.83 2.18
265 268 3.313249 TGCATGTGCGGATCTTAGATTTG 59.687 43.478 0.00 0.00 45.83 2.32
290 293 3.059352 AGTTGGTGAATGTAGAGGCAC 57.941 47.619 0.00 0.00 0.00 5.01
309 312 3.493176 GCACTGCCAGGAATTGTTTTCTT 60.493 43.478 0.00 0.00 0.00 2.52
315 318 4.475944 CCAGGAATTGTTTTCTTAGTGCG 58.524 43.478 0.00 0.00 0.00 5.34
320 323 0.109723 TGTTTTCTTAGTGCGCCCCT 59.890 50.000 4.18 2.93 0.00 4.79
323 326 0.398696 TTTCTTAGTGCGCCCCTGAA 59.601 50.000 4.18 0.01 0.00 3.02
335 338 1.101331 CCCCTGAAATTCTGAGCTGC 58.899 55.000 0.00 0.00 0.00 5.25
339 342 2.479730 CCTGAAATTCTGAGCTGCATGC 60.480 50.000 11.82 11.82 43.29 4.06
372 375 0.373716 CGTGCCGTGCTTTCTAATCC 59.626 55.000 0.00 0.00 0.00 3.01
382 385 5.648572 GTGCTTTCTAATCCACGTAGTACT 58.351 41.667 0.00 0.00 41.61 2.73
428 431 8.752766 ATCAGACTTTGCTTTGAATTTACATG 57.247 30.769 0.00 0.00 0.00 3.21
432 435 8.632679 AGACTTTGCTTTGAATTTACATGAGAA 58.367 29.630 0.00 0.00 0.00 2.87
456 459 6.668541 ATACAAACCATGTCTGAATCTTCG 57.331 37.500 0.00 0.00 42.70 3.79
519 522 2.167693 TCGGCATCTCGGTCAGTTAATT 59.832 45.455 0.00 0.00 0.00 1.40
522 525 2.939103 GCATCTCGGTCAGTTAATTGCT 59.061 45.455 0.00 0.00 0.00 3.91
527 530 4.705507 TCTCGGTCAGTTAATTGCTACTCT 59.294 41.667 0.00 0.00 0.00 3.24
583 586 4.327898 TCGGACGATTAACTGGAAAATTCG 59.672 41.667 0.00 0.00 0.00 3.34
609 612 0.469331 TATCCCTACTCAGCACCCGG 60.469 60.000 0.00 0.00 0.00 5.73
644 647 6.659824 ACCAGTTACCGATATCCTGAAATTT 58.340 36.000 7.31 0.00 0.00 1.82
672 675 9.959721 AATATTATGACCCTACATTACATCACC 57.040 33.333 0.00 0.00 0.00 4.02
673 676 3.812156 TGACCCTACATTACATCACCG 57.188 47.619 0.00 0.00 0.00 4.94
675 678 2.433239 GACCCTACATTACATCACCGGT 59.567 50.000 0.00 0.00 0.00 5.28
679 682 2.018542 ACATTACATCACCGGTTCCG 57.981 50.000 2.97 4.08 0.00 4.30
686 689 2.718747 ATCACCGGTTCCGAACGCAA 62.719 55.000 2.97 0.00 0.00 4.85
693 696 2.349627 CGGTTCCGAACGCAATTTGTTA 60.350 45.455 5.19 0.00 0.00 2.41
698 701 5.365403 TCCGAACGCAATTTGTTATTCTT 57.635 34.783 0.00 0.00 0.00 2.52
700 703 5.627367 TCCGAACGCAATTTGTTATTCTTTG 59.373 36.000 0.00 0.00 0.00 2.77
741 744 1.225704 GGTTCATAGCAGCCTGCCT 59.774 57.895 14.25 3.40 46.52 4.75
742 745 0.394899 GGTTCATAGCAGCCTGCCTT 60.395 55.000 14.25 0.00 46.52 4.35
743 746 1.134098 GGTTCATAGCAGCCTGCCTTA 60.134 52.381 14.25 0.00 46.52 2.69
744 747 2.216898 GTTCATAGCAGCCTGCCTTAG 58.783 52.381 14.25 1.16 46.52 2.18
745 748 1.500474 TCATAGCAGCCTGCCTTAGT 58.500 50.000 14.25 0.00 46.52 2.24
746 749 1.139654 TCATAGCAGCCTGCCTTAGTG 59.860 52.381 14.25 5.62 46.52 2.74
747 750 1.134280 CATAGCAGCCTGCCTTAGTGT 60.134 52.381 14.25 0.00 46.52 3.55
748 751 0.537188 TAGCAGCCTGCCTTAGTGTC 59.463 55.000 14.25 0.00 46.52 3.67
749 752 1.197430 AGCAGCCTGCCTTAGTGTCT 61.197 55.000 14.25 0.00 46.52 3.41
750 753 0.742635 GCAGCCTGCCTTAGTGTCTC 60.743 60.000 5.06 0.00 37.42 3.36
751 754 0.610174 CAGCCTGCCTTAGTGTCTCA 59.390 55.000 0.00 0.00 0.00 3.27
752 755 1.002430 CAGCCTGCCTTAGTGTCTCAA 59.998 52.381 0.00 0.00 0.00 3.02
753 756 1.002544 AGCCTGCCTTAGTGTCTCAAC 59.997 52.381 0.00 0.00 0.00 3.18
754 757 1.002544 GCCTGCCTTAGTGTCTCAACT 59.997 52.381 0.00 0.00 0.00 3.16
755 758 2.693069 CCTGCCTTAGTGTCTCAACTG 58.307 52.381 0.00 0.00 0.00 3.16
756 759 2.300152 CCTGCCTTAGTGTCTCAACTGA 59.700 50.000 0.00 0.00 0.00 3.41
757 760 3.244215 CCTGCCTTAGTGTCTCAACTGAA 60.244 47.826 0.00 0.00 0.00 3.02
758 761 4.564406 CCTGCCTTAGTGTCTCAACTGAAT 60.564 45.833 0.00 0.00 0.00 2.57
759 762 4.973168 TGCCTTAGTGTCTCAACTGAATT 58.027 39.130 0.00 0.00 0.00 2.17
760 763 4.756642 TGCCTTAGTGTCTCAACTGAATTG 59.243 41.667 0.00 0.00 39.94 2.32
761 764 4.154918 GCCTTAGTGTCTCAACTGAATTGG 59.845 45.833 0.00 0.00 38.98 3.16
762 765 5.551233 CCTTAGTGTCTCAACTGAATTGGA 58.449 41.667 0.00 0.00 38.98 3.53
763 766 5.997746 CCTTAGTGTCTCAACTGAATTGGAA 59.002 40.000 0.00 0.00 38.98 3.53
764 767 6.656693 CCTTAGTGTCTCAACTGAATTGGAAT 59.343 38.462 0.00 0.00 38.98 3.01
765 768 7.175641 CCTTAGTGTCTCAACTGAATTGGAATT 59.824 37.037 0.00 0.00 38.98 2.17
766 769 6.966534 AGTGTCTCAACTGAATTGGAATTT 57.033 33.333 0.00 0.00 38.98 1.82
767 770 6.974965 AGTGTCTCAACTGAATTGGAATTTC 58.025 36.000 0.00 0.00 38.98 2.17
768 771 6.547141 AGTGTCTCAACTGAATTGGAATTTCA 59.453 34.615 0.00 0.00 38.98 2.69
769 772 6.638468 GTGTCTCAACTGAATTGGAATTTCAC 59.362 38.462 0.00 0.00 38.98 3.18
770 773 6.320926 TGTCTCAACTGAATTGGAATTTCACA 59.679 34.615 0.00 0.00 38.98 3.58
771 774 7.147932 TGTCTCAACTGAATTGGAATTTCACAA 60.148 33.333 0.00 1.36 38.98 3.33
772 775 7.380602 GTCTCAACTGAATTGGAATTTCACAAG 59.619 37.037 0.00 0.00 38.98 3.16
773 776 7.068593 TCTCAACTGAATTGGAATTTCACAAGT 59.931 33.333 0.00 0.22 38.98 3.16
774 777 7.202526 TCAACTGAATTGGAATTTCACAAGTC 58.797 34.615 15.20 15.20 40.80 3.01
775 778 6.966534 ACTGAATTGGAATTTCACAAGTCT 57.033 33.333 19.28 6.73 40.95 3.24
776 779 7.352079 ACTGAATTGGAATTTCACAAGTCTT 57.648 32.000 19.28 10.33 40.95 3.01
777 780 7.785033 ACTGAATTGGAATTTCACAAGTCTTT 58.215 30.769 19.28 10.11 40.95 2.52
778 781 7.707893 ACTGAATTGGAATTTCACAAGTCTTTG 59.292 33.333 19.28 14.51 40.95 2.77
780 783 8.690884 TGAATTGGAATTTCACAAGTCTTTGTA 58.309 29.630 19.28 5.82 45.53 2.41
781 784 8.871686 AATTGGAATTTCACAAGTCTTTGTAC 57.128 30.769 0.00 0.00 45.53 2.90
782 785 6.385649 TGGAATTTCACAAGTCTTTGTACC 57.614 37.500 0.00 0.00 45.53 3.34
783 786 6.126409 TGGAATTTCACAAGTCTTTGTACCT 58.874 36.000 0.00 0.00 45.53 3.08
784 787 6.039270 TGGAATTTCACAAGTCTTTGTACCTG 59.961 38.462 0.00 0.00 45.53 4.00
785 788 6.039382 GGAATTTCACAAGTCTTTGTACCTGT 59.961 38.462 0.00 0.00 45.53 4.00
786 789 7.404671 AATTTCACAAGTCTTTGTACCTGTT 57.595 32.000 0.00 0.00 45.53 3.16
787 790 6.431198 TTTCACAAGTCTTTGTACCTGTTC 57.569 37.500 0.00 0.00 45.53 3.18
788 791 4.448210 TCACAAGTCTTTGTACCTGTTCC 58.552 43.478 0.00 0.00 45.53 3.62
789 792 3.564225 CACAAGTCTTTGTACCTGTTCCC 59.436 47.826 0.00 0.00 45.53 3.97
790 793 3.146847 CAAGTCTTTGTACCTGTTCCCC 58.853 50.000 0.00 0.00 0.00 4.81
791 794 2.702748 AGTCTTTGTACCTGTTCCCCT 58.297 47.619 0.00 0.00 0.00 4.79
792 795 3.053826 AGTCTTTGTACCTGTTCCCCTT 58.946 45.455 0.00 0.00 0.00 3.95
793 796 3.072622 AGTCTTTGTACCTGTTCCCCTTC 59.927 47.826 0.00 0.00 0.00 3.46
794 797 3.072622 GTCTTTGTACCTGTTCCCCTTCT 59.927 47.826 0.00 0.00 0.00 2.85
795 798 3.326880 TCTTTGTACCTGTTCCCCTTCTC 59.673 47.826 0.00 0.00 0.00 2.87
796 799 2.715763 TGTACCTGTTCCCCTTCTCT 57.284 50.000 0.00 0.00 0.00 3.10
797 800 2.986050 TGTACCTGTTCCCCTTCTCTT 58.014 47.619 0.00 0.00 0.00 2.85
798 801 2.904434 TGTACCTGTTCCCCTTCTCTTC 59.096 50.000 0.00 0.00 0.00 2.87
799 802 2.118403 ACCTGTTCCCCTTCTCTTCA 57.882 50.000 0.00 0.00 0.00 3.02
800 803 2.637165 ACCTGTTCCCCTTCTCTTCAT 58.363 47.619 0.00 0.00 0.00 2.57
801 804 2.573915 ACCTGTTCCCCTTCTCTTCATC 59.426 50.000 0.00 0.00 0.00 2.92
802 805 2.843113 CCTGTTCCCCTTCTCTTCATCT 59.157 50.000 0.00 0.00 0.00 2.90
803 806 3.265479 CCTGTTCCCCTTCTCTTCATCTT 59.735 47.826 0.00 0.00 0.00 2.40
804 807 4.471386 CCTGTTCCCCTTCTCTTCATCTTA 59.529 45.833 0.00 0.00 0.00 2.10
805 808 5.422214 TGTTCCCCTTCTCTTCATCTTAC 57.578 43.478 0.00 0.00 0.00 2.34
806 809 4.225267 TGTTCCCCTTCTCTTCATCTTACC 59.775 45.833 0.00 0.00 0.00 2.85
807 810 3.031736 TCCCCTTCTCTTCATCTTACCG 58.968 50.000 0.00 0.00 0.00 4.02
808 811 3.031736 CCCCTTCTCTTCATCTTACCGA 58.968 50.000 0.00 0.00 0.00 4.69
809 812 3.643792 CCCCTTCTCTTCATCTTACCGAT 59.356 47.826 0.00 0.00 0.00 4.18
810 813 4.833380 CCCCTTCTCTTCATCTTACCGATA 59.167 45.833 0.00 0.00 0.00 2.92
811 814 5.482175 CCCCTTCTCTTCATCTTACCGATAT 59.518 44.000 0.00 0.00 0.00 1.63
812 815 6.350612 CCCCTTCTCTTCATCTTACCGATATC 60.351 46.154 0.00 0.00 0.00 1.63
813 816 6.350612 CCCTTCTCTTCATCTTACCGATATCC 60.351 46.154 0.00 0.00 0.00 2.59
814 817 6.435904 CCTTCTCTTCATCTTACCGATATCCT 59.564 42.308 0.00 0.00 0.00 3.24
815 818 6.825944 TCTCTTCATCTTACCGATATCCTG 57.174 41.667 0.00 0.00 0.00 3.86
816 819 6.543735 TCTCTTCATCTTACCGATATCCTGA 58.456 40.000 0.00 0.00 0.00 3.86
817 820 7.004691 TCTCTTCATCTTACCGATATCCTGAA 58.995 38.462 0.00 0.00 0.00 3.02
818 821 7.505923 TCTCTTCATCTTACCGATATCCTGAAA 59.494 37.037 0.00 0.00 0.00 2.69
819 822 8.195165 TCTTCATCTTACCGATATCCTGAAAT 57.805 34.615 0.00 0.00 0.00 2.17
820 823 8.651389 TCTTCATCTTACCGATATCCTGAAATT 58.349 33.333 0.00 0.00 0.00 1.82
821 824 9.277783 CTTCATCTTACCGATATCCTGAAATTT 57.722 33.333 0.00 0.00 0.00 1.82
822 825 8.607441 TCATCTTACCGATATCCTGAAATTTG 57.393 34.615 0.00 0.00 0.00 2.32
851 857 2.432874 TGACCCTACATTACATCACCGG 59.567 50.000 0.00 0.00 0.00 5.28
856 862 2.018542 ACATTACATCACCGGTTCCG 57.981 50.000 2.97 4.08 0.00 4.30
863 869 2.718747 ATCACCGGTTCCGAACGCAA 62.719 55.000 2.97 0.00 0.00 4.85
867 874 0.039888 CCGGTTCCGAACGCAATTTT 60.040 50.000 13.08 0.00 0.00 1.82
916 938 1.825622 GGGGTTCATAGCAGCCTGC 60.826 63.158 9.13 9.13 45.46 4.85
968 998 2.702748 AGTCTTTGTACCTGTTCCCCT 58.297 47.619 0.00 0.00 0.00 4.79
1225 1257 6.872920 TGTGCCTTTCAGTTCTTTGTTAATT 58.127 32.000 0.00 0.00 0.00 1.40
1465 1511 7.172190 ACTTCCAGCTGATGTTATATTTGATCG 59.828 37.037 17.39 0.00 0.00 3.69
1481 1527 3.457234 TGATCGTTCCATTTCCATCTCG 58.543 45.455 0.00 0.00 0.00 4.04
1487 1533 3.348647 TCCATTTCCATCTCGAGCAAA 57.651 42.857 7.81 4.47 0.00 3.68
1493 1539 5.598416 TTTCCATCTCGAGCAAATCTAGA 57.402 39.130 7.81 0.00 34.50 2.43
1500 1546 7.201679 CCATCTCGAGCAAATCTAGAAAAATGT 60.202 37.037 7.81 0.00 33.77 2.71
1504 1550 5.736358 CGAGCAAATCTAGAAAAATGTCAGC 59.264 40.000 0.00 0.00 0.00 4.26
1509 1555 7.695618 GCAAATCTAGAAAAATGTCAGCTGTAG 59.304 37.037 14.67 4.79 0.00 2.74
1514 1560 8.364894 TCTAGAAAAATGTCAGCTGTAGTAACA 58.635 33.333 14.67 10.69 0.00 2.41
1518 1564 9.296400 GAAAAATGTCAGCTGTAGTAACAAAAA 57.704 29.630 14.67 0.00 34.49 1.94
1520 1566 7.568199 AATGTCAGCTGTAGTAACAAAAAGT 57.432 32.000 14.67 0.00 34.49 2.66
1521 1567 6.358118 TGTCAGCTGTAGTAACAAAAAGTG 57.642 37.500 14.67 0.00 34.49 3.16
1522 1568 5.205565 GTCAGCTGTAGTAACAAAAAGTGC 58.794 41.667 14.67 0.00 34.49 4.40
1523 1569 4.878971 TCAGCTGTAGTAACAAAAAGTGCA 59.121 37.500 14.67 0.00 34.49 4.57
1524 1570 5.355630 TCAGCTGTAGTAACAAAAAGTGCAA 59.644 36.000 14.67 0.00 34.49 4.08
1525 1571 6.033341 CAGCTGTAGTAACAAAAAGTGCAAA 58.967 36.000 5.25 0.00 34.49 3.68
1526 1572 6.529829 CAGCTGTAGTAACAAAAAGTGCAAAA 59.470 34.615 5.25 0.00 34.49 2.44
1528 1574 6.019881 GCTGTAGTAACAAAAAGTGCAAAAGG 60.020 38.462 0.00 0.00 34.49 3.11
1529 1575 6.334202 TGTAGTAACAAAAAGTGCAAAAGGG 58.666 36.000 0.00 0.00 30.91 3.95
1530 1576 4.765273 AGTAACAAAAAGTGCAAAAGGGG 58.235 39.130 0.00 0.00 0.00 4.79
1531 1577 2.708216 ACAAAAAGTGCAAAAGGGGG 57.292 45.000 0.00 0.00 0.00 5.40
1532 1578 1.308047 CAAAAAGTGCAAAAGGGGGC 58.692 50.000 0.00 0.00 0.00 5.80
1586 1673 9.793259 TGATGATTCCAATTTTATAGTACCTCC 57.207 33.333 0.00 0.00 0.00 4.30
1606 1693 4.041464 TCCAGGGTATGCCACTTGTATTA 58.959 43.478 1.04 0.00 36.17 0.98
1706 1846 1.462791 CACCGTTTTTCAACAGCGTC 58.537 50.000 0.00 0.00 32.54 5.19
1717 1857 3.872354 TCAACAGCGTCAGAATTTTTCG 58.128 40.909 0.00 0.00 34.02 3.46
1720 1860 1.971962 CAGCGTCAGAATTTTTCGTGC 59.028 47.619 0.00 0.00 34.02 5.34
1724 1864 3.181510 GCGTCAGAATTTTTCGTGCCTAT 60.182 43.478 0.00 0.00 34.02 2.57
1726 1866 5.446741 GCGTCAGAATTTTTCGTGCCTATTA 60.447 40.000 0.00 0.00 34.02 0.98
1727 1867 6.539324 CGTCAGAATTTTTCGTGCCTATTAA 58.461 36.000 0.00 0.00 34.02 1.40
1835 2070 0.979665 TCTGGGCTTGTTCTCTGGAG 59.020 55.000 0.00 0.00 0.00 3.86
1850 2085 9.042450 TGTTCTCTGGAGGTTTAGTGATTAATA 57.958 33.333 0.00 0.00 0.00 0.98
1914 2152 1.254954 GGGGAGAGTACTGTCGTGTT 58.745 55.000 13.40 0.00 0.00 3.32
1945 2183 4.762251 AGCTAAAATCAACTGAAGGTGGTC 59.238 41.667 0.00 0.00 0.00 4.02
1946 2184 4.378459 GCTAAAATCAACTGAAGGTGGTCG 60.378 45.833 0.00 0.00 0.00 4.79
1947 2185 3.485463 AAATCAACTGAAGGTGGTCGA 57.515 42.857 0.00 0.00 0.00 4.20
1948 2186 2.751166 ATCAACTGAAGGTGGTCGAG 57.249 50.000 0.00 0.00 0.00 4.04
1949 2187 0.033504 TCAACTGAAGGTGGTCGAGC 59.966 55.000 7.89 7.89 0.00 5.03
1950 2188 0.249868 CAACTGAAGGTGGTCGAGCA 60.250 55.000 14.39 14.39 0.00 4.26
1978 2216 5.237815 CAGTATTCAAGGTGTGCAACTAGA 58.762 41.667 0.00 0.00 38.04 2.43
2007 2245 4.444164 GGGGAAAAGCTAAGAGAGGATGAG 60.444 50.000 0.00 0.00 0.00 2.90
2038 2276 8.421002 ACATATATGTTTGGGAATTTTGTAGGC 58.579 33.333 12.75 0.00 37.90 3.93
2110 2348 0.514691 CAAGTGGAAAGAGCAGACGC 59.485 55.000 0.00 0.00 38.99 5.19
2130 2368 9.767684 CAGACGCTAATATTTAAATTCAACACA 57.232 29.630 5.91 0.00 0.00 3.72
2149 2387 4.651585 GCGCAGTGCAATTTGGAA 57.348 50.000 16.83 0.00 45.45 3.53
2150 2388 3.126729 GCGCAGTGCAATTTGGAAT 57.873 47.368 16.83 0.00 45.45 3.01
2151 2389 1.431496 GCGCAGTGCAATTTGGAATT 58.569 45.000 16.83 0.00 45.45 2.17
2152 2390 1.799994 GCGCAGTGCAATTTGGAATTT 59.200 42.857 16.83 0.00 45.45 1.82
2153 2391 2.223845 GCGCAGTGCAATTTGGAATTTT 59.776 40.909 16.83 0.00 45.45 1.82
2154 2392 3.801293 CGCAGTGCAATTTGGAATTTTG 58.199 40.909 16.83 0.00 0.00 2.44
2155 2393 3.493877 CGCAGTGCAATTTGGAATTTTGA 59.506 39.130 16.83 0.00 0.00 2.69
2156 2394 4.025061 CGCAGTGCAATTTGGAATTTTGAA 60.025 37.500 16.83 0.00 0.00 2.69
2277 2530 4.097741 AGTCTATGTCAGTCAGCATCTGTC 59.902 45.833 0.00 0.00 34.86 3.51
2286 2539 1.792367 TCAGCATCTGTCGTGTTTTCG 59.208 47.619 0.00 0.00 32.61 3.46
2307 2560 1.601430 GCCTACTATGAAGCAAGCTGC 59.399 52.381 0.00 0.00 45.46 5.25
2332 2591 7.042523 GCATGGATGGTTGTATTTTTAGCATTC 60.043 37.037 0.00 0.00 30.82 2.67
2351 2610 5.220529 GCATTCAAAGTAGGCAATGCAATTC 60.221 40.000 7.79 0.00 46.87 2.17
2353 2612 3.119531 TCAAAGTAGGCAATGCAATTCCG 60.120 43.478 7.79 0.00 31.22 4.30
2360 2619 2.466846 GCAATGCAATTCCGAATCTGG 58.533 47.619 0.00 0.00 31.22 3.86
2362 2621 3.794475 GCAATGCAATTCCGAATCTGGAG 60.794 47.826 0.00 0.00 39.72 3.86
2363 2622 3.565764 ATGCAATTCCGAATCTGGAGA 57.434 42.857 0.00 0.00 39.72 3.71
2364 2623 2.910199 TGCAATTCCGAATCTGGAGAG 58.090 47.619 0.00 0.00 39.72 3.20
2365 2624 2.216898 GCAATTCCGAATCTGGAGAGG 58.783 52.381 0.00 0.00 39.72 3.69
2382 2651 5.163405 TGGAGAGGTACTAAATCACATCTGC 60.163 44.000 1.69 1.69 42.14 4.26
2399 2668 7.328277 ACATCTGCTGTGTTTTAGTTTGTTA 57.672 32.000 0.00 0.00 36.48 2.41
2448 2717 4.530710 TTAAGTCTAACACTGATGCGGT 57.469 40.909 0.00 0.00 34.56 5.68
2468 2737 7.921787 TGCGGTGTAATTTGTATAACTTATGG 58.078 34.615 0.00 0.00 0.00 2.74
2473 2742 9.931210 GTGTAATTTGTATAACTTATGGTCAGC 57.069 33.333 0.00 0.00 0.00 4.26
2493 2762 8.220618 GTCAGCAAATTGACAATTTTAGAGAC 57.779 34.615 20.94 19.75 45.32 3.36
2494 2763 7.862372 GTCAGCAAATTGACAATTTTAGAGACA 59.138 33.333 20.94 2.43 45.32 3.41
2495 2764 7.862372 TCAGCAAATTGACAATTTTAGAGACAC 59.138 33.333 20.94 6.16 38.97 3.67
2496 2765 7.864379 CAGCAAATTGACAATTTTAGAGACACT 59.136 33.333 20.94 7.89 38.97 3.55
2497 2766 9.066892 AGCAAATTGACAATTTTAGAGACACTA 57.933 29.630 20.94 0.00 38.97 2.74
2498 2767 9.334693 GCAAATTGACAATTTTAGAGACACTAG 57.665 33.333 20.94 8.56 38.97 2.57
2499 2768 9.831737 CAAATTGACAATTTTAGAGACACTAGG 57.168 33.333 20.94 4.41 38.97 3.02
2500 2769 9.793259 AAATTGACAATTTTAGAGACACTAGGA 57.207 29.630 18.41 0.00 37.84 2.94
2501 2770 8.779354 ATTGACAATTTTAGAGACACTAGGAC 57.221 34.615 0.00 0.00 32.30 3.85
2547 2816 8.262227 ACAATCAAGCAAAATATGATGGTTCAT 58.738 29.630 3.25 0.00 44.76 2.57
2575 2844 4.773510 CTTGTTTTTAGGTCTTCGTCAGC 58.226 43.478 0.00 0.00 0.00 4.26
2601 2870 5.300286 GGCATCTGTTATGTTTTCAGCCTAT 59.700 40.000 0.00 0.00 35.63 2.57
2605 2874 9.113838 CATCTGTTATGTTTTCAGCCTATTACT 57.886 33.333 0.00 0.00 0.00 2.24
2606 2875 8.492673 TCTGTTATGTTTTCAGCCTATTACTG 57.507 34.615 0.00 0.00 36.44 2.74
2607 2876 8.100791 TCTGTTATGTTTTCAGCCTATTACTGT 58.899 33.333 0.00 0.00 36.50 3.55
2608 2877 9.378551 CTGTTATGTTTTCAGCCTATTACTGTA 57.621 33.333 0.00 0.00 36.50 2.74
2609 2878 9.158233 TGTTATGTTTTCAGCCTATTACTGTAC 57.842 33.333 0.00 0.00 36.50 2.90
2610 2879 9.158233 GTTATGTTTTCAGCCTATTACTGTACA 57.842 33.333 0.00 0.00 36.50 2.90
2646 2921 6.909550 TGGATGGTTGTACTTTTAGCATTT 57.090 33.333 0.00 0.00 30.82 2.32
2674 2949 7.335627 TGTAAGCTATGCAATTACTAACCTGT 58.664 34.615 12.67 0.00 31.99 4.00
2681 2959 7.807977 ATGCAATTACTAACCTGTAATCTGG 57.192 36.000 0.00 0.00 40.85 3.86
2688 2966 8.842358 TTACTAACCTGTAATCTGGAAAAGTG 57.158 34.615 0.00 0.00 36.65 3.16
2694 2972 6.206829 ACCTGTAATCTGGAAAAGTGCTAAAC 59.793 38.462 0.00 0.00 36.65 2.01
2727 3009 6.204495 GTGAAAATACAACACATTTTGGCCAT 59.796 34.615 6.09 0.00 36.09 4.40
2784 3072 4.853924 ATCATGGTGGTCAAAAACTCAC 57.146 40.909 0.00 0.00 0.00 3.51
2827 3117 2.806608 ACAGCAGAACAAATTGCCAG 57.193 45.000 0.00 0.00 41.17 4.85
2886 3177 0.188342 ACATATGGGATGTTGGGGGC 59.812 55.000 7.80 0.00 0.00 5.80
2922 3213 5.166398 CGTTCGTATTGGAGGAACTACTTT 58.834 41.667 8.10 0.00 46.31 2.66
2952 3243 0.395312 ACGGTCTAGTTTGGGTGGTG 59.605 55.000 0.00 0.00 0.00 4.17
3187 3494 7.973388 TGTTTGTGCTTAATTTATGTGCTATCC 59.027 33.333 0.00 0.00 0.00 2.59
3198 3505 7.843490 TTTATGTGCTATCCTGTTCAACTAC 57.157 36.000 0.00 0.00 0.00 2.73
3206 3514 6.256757 GCTATCCTGTTCAACTACTGAATGAC 59.743 42.308 0.00 0.00 45.74 3.06
3238 3546 1.833630 TGATTACAGAGACTGGCTGGG 59.166 52.381 0.00 0.00 37.69 4.45
3277 3585 3.755905 TCGCAAATAAGCAGGACATTCAA 59.244 39.130 0.00 0.00 0.00 2.69
3332 3640 6.812160 GGTAAAACACACTATCACTAGTCCAG 59.188 42.308 0.00 0.00 35.99 3.86
3333 3641 6.420913 AAAACACACTATCACTAGTCCAGT 57.579 37.500 0.00 0.00 35.99 4.00
3334 3642 7.534723 AAAACACACTATCACTAGTCCAGTA 57.465 36.000 0.00 0.00 35.99 2.74
3335 3643 6.512342 AACACACTATCACTAGTCCAGTAC 57.488 41.667 0.00 0.00 35.99 2.73
3336 3644 5.817784 ACACACTATCACTAGTCCAGTACT 58.182 41.667 0.00 0.00 42.62 2.73
3337 3645 5.881443 ACACACTATCACTAGTCCAGTACTC 59.119 44.000 0.00 0.00 39.80 2.59
3338 3646 5.297278 CACACTATCACTAGTCCAGTACTCC 59.703 48.000 0.00 0.00 39.80 3.85
3339 3647 5.045066 ACACTATCACTAGTCCAGTACTCCA 60.045 44.000 0.00 0.00 39.80 3.86
3340 3648 5.529430 CACTATCACTAGTCCAGTACTCCAG 59.471 48.000 0.00 0.00 39.80 3.86
3401 3712 0.104855 TACCTGGAGTCGCATGATGC 59.895 55.000 7.49 7.49 40.69 3.91
3420 3731 1.600957 GCCATGACCATCTTGTGATCG 59.399 52.381 0.00 0.00 0.00 3.69
3427 3738 1.590238 CCATCTTGTGATCGTCGCTTC 59.410 52.381 0.00 0.00 0.00 3.86
3429 3740 1.982612 TCTTGTGATCGTCGCTTCAG 58.017 50.000 0.00 0.00 0.00 3.02
3433 3744 0.526524 GTGATCGTCGCTTCAGGGAG 60.527 60.000 0.00 0.00 37.69 4.30
3481 3801 6.071334 TCCCAGCAAGCATATACATACTAGTC 60.071 42.308 0.00 0.00 0.00 2.59
3491 3811 8.024285 GCATATACATACTAGTCTGTGGTCTTC 58.976 40.741 20.80 5.33 0.00 2.87
3517 3840 6.294176 GCTCCAAGATGCTTTTTGTCTTCTTA 60.294 38.462 2.76 0.00 30.19 2.10
3553 3894 8.718734 GTTTAGTCTTTGAATTCGATGGTAACT 58.281 33.333 8.35 7.39 37.61 2.24
3556 3897 5.642063 GTCTTTGAATTCGATGGTAACTGGA 59.358 40.000 8.35 0.00 37.61 3.86
3557 3898 5.874810 TCTTTGAATTCGATGGTAACTGGAG 59.125 40.000 8.35 0.00 37.61 3.86
3619 3961 1.201429 AGGACCGGCACTGGAAGATT 61.201 55.000 0.00 0.00 37.43 2.40
3676 4018 2.032681 GGCTTCGACTGGCTGGTT 59.967 61.111 4.26 0.00 0.00 3.67
3719 4061 2.234300 TGTCCTCGACTGAAACAACC 57.766 50.000 0.00 0.00 33.15 3.77
3721 4063 2.093394 TGTCCTCGACTGAAACAACCAA 60.093 45.455 0.00 0.00 33.15 3.67
3722 4064 2.940410 GTCCTCGACTGAAACAACCAAA 59.060 45.455 0.00 0.00 0.00 3.28
3723 4065 2.940410 TCCTCGACTGAAACAACCAAAC 59.060 45.455 0.00 0.00 0.00 2.93
3724 4066 2.943033 CCTCGACTGAAACAACCAAACT 59.057 45.455 0.00 0.00 0.00 2.66
3744 4087 5.543507 ACTCTCTGGACATTTAGCCATAG 57.456 43.478 0.00 0.00 32.89 2.23
3763 4136 2.125673 CATGCTGCTGCTTTGGCC 60.126 61.111 17.00 0.00 40.48 5.36
3764 4137 2.602267 ATGCTGCTGCTTTGGCCA 60.602 55.556 17.00 0.00 40.48 5.36
3765 4138 1.987855 ATGCTGCTGCTTTGGCCAT 60.988 52.632 6.09 0.00 40.48 4.40
3768 4141 1.807886 CTGCTGCTTTGGCCATCTC 59.192 57.895 6.09 0.00 37.74 2.75
3769 4142 0.963856 CTGCTGCTTTGGCCATCTCA 60.964 55.000 6.09 3.48 37.74 3.27
3771 4144 0.102481 GCTGCTTTGGCCATCTCATG 59.898 55.000 6.09 0.00 37.74 3.07
3819 4195 7.961325 GTTTGAACCAAACCATAAATGACAT 57.039 32.000 10.51 0.00 45.32 3.06
3841 4217 8.706322 ACATTTTTATTCTACACTTCCCTTGT 57.294 30.769 0.00 0.00 0.00 3.16
3846 4222 1.623811 TCTACACTTCCCTTGTGCTCC 59.376 52.381 0.00 0.00 38.86 4.70
3848 4224 1.071471 CACTTCCCTTGTGCTCCGT 59.929 57.895 0.00 0.00 0.00 4.69
3851 4227 0.951040 CTTCCCTTGTGCTCCGTGTC 60.951 60.000 0.00 0.00 0.00 3.67
3854 4230 1.069765 CCTTGTGCTCCGTGTCAGT 59.930 57.895 0.00 0.00 0.00 3.41
3855 4231 0.532862 CCTTGTGCTCCGTGTCAGTT 60.533 55.000 0.00 0.00 0.00 3.16
3856 4232 0.583438 CTTGTGCTCCGTGTCAGTTG 59.417 55.000 0.00 0.00 0.00 3.16
3857 4233 0.107897 TTGTGCTCCGTGTCAGTTGT 60.108 50.000 0.00 0.00 0.00 3.32
3858 4234 0.809636 TGTGCTCCGTGTCAGTTGTG 60.810 55.000 0.00 0.00 0.00 3.33
3859 4235 0.529773 GTGCTCCGTGTCAGTTGTGA 60.530 55.000 0.00 0.00 0.00 3.58
3860 4236 0.176910 TGCTCCGTGTCAGTTGTGAA 59.823 50.000 0.00 0.00 33.27 3.18
3861 4237 1.295792 GCTCCGTGTCAGTTGTGAAA 58.704 50.000 0.00 0.00 33.27 2.69
3862 4238 1.261619 GCTCCGTGTCAGTTGTGAAAG 59.738 52.381 0.00 0.00 33.27 2.62
3867 4243 2.872245 CGTGTCAGTTGTGAAAGATGGT 59.128 45.455 0.00 0.00 33.27 3.55
3871 4247 3.876914 GTCAGTTGTGAAAGATGGTGACA 59.123 43.478 0.00 0.00 38.82 3.58
3908 4284 9.848710 CATCTTATGCAGGATTAGAATATGGAT 57.151 33.333 0.00 0.00 0.00 3.41
3909 4285 9.848710 ATCTTATGCAGGATTAGAATATGGATG 57.151 33.333 0.00 0.00 0.00 3.51
3911 4287 5.509832 TGCAGGATTAGAATATGGATGCT 57.490 39.130 0.00 0.00 32.53 3.79
3913 4289 4.569966 GCAGGATTAGAATATGGATGCTCG 59.430 45.833 0.00 0.00 0.00 5.03
3914 4290 4.569966 CAGGATTAGAATATGGATGCTCGC 59.430 45.833 0.00 0.00 0.00 5.03
3915 4291 4.223700 AGGATTAGAATATGGATGCTCGCA 59.776 41.667 0.00 0.00 0.00 5.10
3916 4292 4.937620 GGATTAGAATATGGATGCTCGCAA 59.062 41.667 0.00 0.00 0.00 4.85
3919 4295 4.011966 AGAATATGGATGCTCGCAATCA 57.988 40.909 0.00 0.00 0.00 2.57
3921 4297 2.916702 TATGGATGCTCGCAATCAGT 57.083 45.000 0.00 0.00 0.00 3.41
3922 4298 1.590932 ATGGATGCTCGCAATCAGTC 58.409 50.000 0.00 0.00 0.00 3.51
3923 4299 0.462581 TGGATGCTCGCAATCAGTCC 60.463 55.000 0.00 0.00 0.00 3.85
3924 4300 1.493950 GGATGCTCGCAATCAGTCCG 61.494 60.000 0.00 0.00 0.00 4.79
3925 4301 0.528466 GATGCTCGCAATCAGTCCGA 60.528 55.000 0.00 0.00 0.00 4.55
3926 4302 0.108186 ATGCTCGCAATCAGTCCGAA 60.108 50.000 0.00 0.00 0.00 4.30
3927 4303 0.108186 TGCTCGCAATCAGTCCGAAT 60.108 50.000 0.00 0.00 0.00 3.34
3928 4304 0.302890 GCTCGCAATCAGTCCGAATG 59.697 55.000 0.00 0.00 0.00 2.67
3930 4306 1.590238 CTCGCAATCAGTCCGAATGAC 59.410 52.381 0.00 0.00 44.82 3.06
3941 4317 4.327854 GTCCGAATGACAGCAAGTTTAG 57.672 45.455 0.00 0.00 43.85 1.85
3942 4318 3.994392 GTCCGAATGACAGCAAGTTTAGA 59.006 43.478 0.00 0.00 43.85 2.10
3943 4319 4.451096 GTCCGAATGACAGCAAGTTTAGAA 59.549 41.667 0.00 0.00 43.85 2.10
3945 4321 6.312918 GTCCGAATGACAGCAAGTTTAGAATA 59.687 38.462 0.00 0.00 43.85 1.75
3947 4323 7.552687 TCCGAATGACAGCAAGTTTAGAATATT 59.447 33.333 0.00 0.00 0.00 1.28
3987 4503 9.713740 CACAGAACAATTTCAATAGATCTAAGC 57.286 33.333 6.52 0.00 33.72 3.09
4013 4545 2.897436 TCGATGGATGCTTCAGAACAG 58.103 47.619 1.64 0.00 0.00 3.16
4014 4546 2.234661 TCGATGGATGCTTCAGAACAGT 59.765 45.455 1.64 0.00 0.00 3.55
4024 4556 5.777802 TGCTTCAGAACAGTAGAGAGAAAG 58.222 41.667 0.00 0.00 0.00 2.62
4028 4560 6.334102 TCAGAACAGTAGAGAGAAAGGAAC 57.666 41.667 0.00 0.00 0.00 3.62
4033 4565 8.047310 AGAACAGTAGAGAGAAAGGAACAAAAA 58.953 33.333 0.00 0.00 0.00 1.94
4034 4566 8.753497 AACAGTAGAGAGAAAGGAACAAAAAT 57.247 30.769 0.00 0.00 0.00 1.82
4035 4567 9.847224 AACAGTAGAGAGAAAGGAACAAAAATA 57.153 29.630 0.00 0.00 0.00 1.40
4047 4579 7.219484 AGGAACAAAAATAATCAGGACACAG 57.781 36.000 0.00 0.00 0.00 3.66
4072 4604 3.579709 AGGATATTTCGCAGCTATGACG 58.420 45.455 0.00 0.00 0.00 4.35
4073 4605 3.255888 AGGATATTTCGCAGCTATGACGA 59.744 43.478 0.00 0.00 34.63 4.20
4074 4606 3.365220 GGATATTTCGCAGCTATGACGAC 59.635 47.826 0.00 0.00 35.64 4.34
4075 4607 2.586258 ATTTCGCAGCTATGACGACT 57.414 45.000 0.00 0.00 35.64 4.18
4076 4608 2.363788 TTTCGCAGCTATGACGACTT 57.636 45.000 0.00 0.00 35.64 3.01
4077 4609 1.629013 TTCGCAGCTATGACGACTTG 58.371 50.000 0.00 0.00 35.64 3.16
4078 4610 0.802222 TCGCAGCTATGACGACTTGC 60.802 55.000 0.00 0.00 32.57 4.01
4079 4611 1.078201 CGCAGCTATGACGACTTGCA 61.078 55.000 0.00 0.00 0.00 4.08
4081 4613 1.667724 GCAGCTATGACGACTTGCATT 59.332 47.619 0.00 0.00 0.00 3.56
4085 4617 4.093998 CAGCTATGACGACTTGCATTTTCT 59.906 41.667 0.00 0.00 0.00 2.52
4097 4629 7.359181 CGACTTGCATTTTCTTCCATTTAAACC 60.359 37.037 0.00 0.00 0.00 3.27
4180 4718 4.029186 CGACGACCGACCGACCAA 62.029 66.667 3.56 0.00 41.76 3.67
4281 4822 2.878406 CGATCAAAAACACCACAGGACT 59.122 45.455 0.00 0.00 0.00 3.85
4282 4823 3.058914 CGATCAAAAACACCACAGGACTC 60.059 47.826 0.00 0.00 0.00 3.36
4311 4854 0.869068 CACGACGACTCAGACTGACT 59.131 55.000 0.00 0.00 0.00 3.41
4312 4855 0.869068 ACGACGACTCAGACTGACTG 59.131 55.000 0.00 0.55 46.97 3.51
4770 5364 1.773496 GAACGTGACGAAGCCGAAG 59.227 57.895 13.70 0.00 39.50 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.646534 TCCTCTGATCATGCTAAGACCA 58.353 45.455 0.00 0.00 0.00 4.02
1 2 4.679373 TTCCTCTGATCATGCTAAGACC 57.321 45.455 0.00 0.00 0.00 3.85
2 3 4.813697 GGTTTCCTCTGATCATGCTAAGAC 59.186 45.833 0.00 0.00 0.00 3.01
3 4 4.471025 TGGTTTCCTCTGATCATGCTAAGA 59.529 41.667 0.00 0.00 0.00 2.10
4 5 4.774124 TGGTTTCCTCTGATCATGCTAAG 58.226 43.478 0.00 0.00 0.00 2.18
5 6 4.842531 TGGTTTCCTCTGATCATGCTAA 57.157 40.909 0.00 0.00 0.00 3.09
15 16 4.038402 ACAGCTGAAAATTGGTTTCCTCTG 59.962 41.667 23.35 12.13 44.41 3.35
86 87 1.065345 AGCCTCAGACACTAGCGAGTA 60.065 52.381 0.00 0.00 33.32 2.59
88 89 0.100325 CAGCCTCAGACACTAGCGAG 59.900 60.000 0.00 0.00 0.00 5.03
92 93 0.108424 GCCACAGCCTCAGACACTAG 60.108 60.000 0.00 0.00 0.00 2.57
106 107 3.574354 TGGATATATTGCTGTGCCACA 57.426 42.857 0.00 0.00 0.00 4.17
109 110 3.441572 GGACATGGATATATTGCTGTGCC 59.558 47.826 0.00 0.00 0.00 5.01
112 113 5.308976 TGTGGACATGGATATATTGCTGT 57.691 39.130 0.00 0.00 0.00 4.40
146 147 3.181454 ACACCCTCTACTTTCACCAAGTG 60.181 47.826 0.00 0.00 45.98 3.16
168 171 3.934579 CAGTTGCATATACACTGCTGTGA 59.065 43.478 27.99 13.25 46.55 3.58
190 193 3.304525 GCAAGCATGGATCTAACATCTGC 60.305 47.826 0.00 0.00 0.00 4.26
196 199 4.397417 ACTTTCAGCAAGCATGGATCTAAC 59.603 41.667 0.00 0.00 35.65 2.34
224 227 1.003545 CACATACTGCTATGCCGTTGC 60.004 52.381 0.00 0.00 34.08 4.17
242 245 1.939974 TCTAAGATCCGCACATGCAC 58.060 50.000 4.49 0.00 42.21 4.57
246 249 8.150945 ACTATAACAAATCTAAGATCCGCACAT 58.849 33.333 0.00 0.00 0.00 3.21
265 268 6.258068 GTGCCTCTACATTCACCAACTATAAC 59.742 42.308 0.00 0.00 0.00 1.89
290 293 5.464168 CACTAAGAAAACAATTCCTGGCAG 58.536 41.667 7.75 7.75 0.00 4.85
309 312 0.618458 AGAATTTCAGGGGCGCACTA 59.382 50.000 10.74 0.00 0.00 2.74
315 318 1.101331 CAGCTCAGAATTTCAGGGGC 58.899 55.000 5.15 5.15 0.00 5.80
320 323 1.475280 GGCATGCAGCTCAGAATTTCA 59.525 47.619 21.36 0.00 44.79 2.69
323 326 2.001361 GCGGCATGCAGCTCAGAATT 62.001 55.000 31.71 0.00 45.45 2.17
382 385 3.427573 TCTCAGAAGACATGGGACGTAA 58.572 45.455 0.00 0.00 0.00 3.18
428 431 8.273780 AGATTCAGACATGGTTTGTATTTCTC 57.726 34.615 0.00 0.00 39.18 2.87
432 435 6.403636 GCGAAGATTCAGACATGGTTTGTATT 60.404 38.462 0.00 0.00 39.18 1.89
435 438 3.189287 GCGAAGATTCAGACATGGTTTGT 59.811 43.478 0.00 0.00 42.79 2.83
456 459 6.862209 TGGAACAATGATATTTACAACCAGC 58.138 36.000 0.00 0.00 31.92 4.85
504 507 4.705507 AGAGTAGCAATTAACTGACCGAGA 59.294 41.667 0.00 0.00 0.00 4.04
519 522 0.317160 CGGTGACCAACAGAGTAGCA 59.683 55.000 1.11 0.00 0.00 3.49
522 525 4.322198 GGTTATTCGGTGACCAACAGAGTA 60.322 45.833 1.11 0.00 36.51 2.59
527 530 1.343789 TCGGTTATTCGGTGACCAACA 59.656 47.619 1.11 0.00 36.29 3.33
583 586 4.563786 GGTGCTGAGTAGGGATAAATAGGC 60.564 50.000 0.00 0.00 0.00 3.93
660 663 1.551430 TCGGAACCGGTGATGTAATGT 59.449 47.619 8.52 0.00 40.25 2.71
672 675 0.040781 ACAAATTGCGTTCGGAACCG 60.041 50.000 14.83 6.94 41.35 4.44
673 676 2.128367 AACAAATTGCGTTCGGAACC 57.872 45.000 14.83 8.52 0.00 3.62
675 678 5.365403 AGAATAACAAATTGCGTTCGGAA 57.635 34.783 1.37 1.37 0.00 4.30
679 682 7.388290 TCACAAAGAATAACAAATTGCGTTC 57.612 32.000 0.00 0.00 0.00 3.95
686 689 8.641541 ACAACAGGATCACAAAGAATAACAAAT 58.358 29.630 0.00 0.00 0.00 2.32
693 696 6.262273 ACGTTTACAACAGGATCACAAAGAAT 59.738 34.615 0.00 0.00 0.00 2.40
698 701 4.035792 CCAACGTTTACAACAGGATCACAA 59.964 41.667 0.00 0.00 0.00 3.33
700 703 3.058501 CCCAACGTTTACAACAGGATCAC 60.059 47.826 0.00 0.00 0.00 3.06
717 720 1.037579 GGCTGCTATGAACCCCCAAC 61.038 60.000 0.00 0.00 0.00 3.77
741 744 8.463930 AAATTCCAATTCAGTTGAGACACTAA 57.536 30.769 0.00 0.00 40.37 2.24
742 745 7.719193 TGAAATTCCAATTCAGTTGAGACACTA 59.281 33.333 0.00 0.00 40.37 2.74
743 746 6.547141 TGAAATTCCAATTCAGTTGAGACACT 59.453 34.615 0.00 0.00 40.37 3.55
744 747 6.638468 GTGAAATTCCAATTCAGTTGAGACAC 59.362 38.462 0.00 0.00 40.37 3.67
745 748 6.320926 TGTGAAATTCCAATTCAGTTGAGACA 59.679 34.615 0.00 0.00 40.37 3.41
746 749 6.738114 TGTGAAATTCCAATTCAGTTGAGAC 58.262 36.000 0.00 0.00 40.37 3.36
747 750 6.957920 TGTGAAATTCCAATTCAGTTGAGA 57.042 33.333 0.00 0.00 40.37 3.27
748 751 7.205297 ACTTGTGAAATTCCAATTCAGTTGAG 58.795 34.615 0.00 0.00 40.37 3.02
749 752 7.068593 AGACTTGTGAAATTCCAATTCAGTTGA 59.931 33.333 12.90 0.00 40.37 3.18
750 753 7.205297 AGACTTGTGAAATTCCAATTCAGTTG 58.795 34.615 12.90 0.00 37.46 3.16
751 754 7.352079 AGACTTGTGAAATTCCAATTCAGTT 57.648 32.000 12.90 0.00 37.46 3.16
752 755 6.966534 AGACTTGTGAAATTCCAATTCAGT 57.033 33.333 12.90 3.44 37.46 3.41
753 756 7.707893 ACAAAGACTTGTGAAATTCCAATTCAG 59.292 33.333 12.90 7.78 44.28 3.02
754 757 7.555087 ACAAAGACTTGTGAAATTCCAATTCA 58.445 30.769 12.90 0.00 44.28 2.57
755 758 8.968242 GTACAAAGACTTGTGAAATTCCAATTC 58.032 33.333 0.81 0.00 45.53 2.17
756 759 7.926018 GGTACAAAGACTTGTGAAATTCCAATT 59.074 33.333 0.00 0.00 45.53 2.32
757 760 7.287696 AGGTACAAAGACTTGTGAAATTCCAAT 59.712 33.333 0.00 0.00 45.53 3.16
758 761 6.605594 AGGTACAAAGACTTGTGAAATTCCAA 59.394 34.615 0.00 0.00 45.53 3.53
759 762 6.039270 CAGGTACAAAGACTTGTGAAATTCCA 59.961 38.462 0.00 0.00 45.53 3.53
760 763 6.039382 ACAGGTACAAAGACTTGTGAAATTCC 59.961 38.462 0.00 0.00 45.53 3.01
761 764 7.027778 ACAGGTACAAAGACTTGTGAAATTC 57.972 36.000 0.00 0.00 45.53 2.17
762 765 7.404671 AACAGGTACAAAGACTTGTGAAATT 57.595 32.000 0.00 0.00 45.53 1.82
763 766 6.039382 GGAACAGGTACAAAGACTTGTGAAAT 59.961 38.462 0.00 0.00 45.53 2.17
764 767 5.355910 GGAACAGGTACAAAGACTTGTGAAA 59.644 40.000 0.00 0.00 45.53 2.69
765 768 4.879545 GGAACAGGTACAAAGACTTGTGAA 59.120 41.667 0.00 0.00 45.53 3.18
766 769 4.448210 GGAACAGGTACAAAGACTTGTGA 58.552 43.478 0.00 0.00 45.53 3.58
767 770 3.564225 GGGAACAGGTACAAAGACTTGTG 59.436 47.826 0.00 0.00 45.53 3.33
769 772 3.146847 GGGGAACAGGTACAAAGACTTG 58.853 50.000 0.00 0.00 38.61 3.16
770 773 3.053826 AGGGGAACAGGTACAAAGACTT 58.946 45.455 0.00 0.00 0.00 3.01
771 774 2.702748 AGGGGAACAGGTACAAAGACT 58.297 47.619 0.00 0.00 0.00 3.24
772 775 3.072622 AGAAGGGGAACAGGTACAAAGAC 59.927 47.826 0.00 0.00 0.00 3.01
773 776 3.323775 AGAAGGGGAACAGGTACAAAGA 58.676 45.455 0.00 0.00 0.00 2.52
774 777 3.328050 AGAGAAGGGGAACAGGTACAAAG 59.672 47.826 0.00 0.00 0.00 2.77
775 778 3.323775 AGAGAAGGGGAACAGGTACAAA 58.676 45.455 0.00 0.00 0.00 2.83
776 779 2.986050 AGAGAAGGGGAACAGGTACAA 58.014 47.619 0.00 0.00 0.00 2.41
777 780 2.715763 AGAGAAGGGGAACAGGTACA 57.284 50.000 0.00 0.00 0.00 2.90
778 781 2.904434 TGAAGAGAAGGGGAACAGGTAC 59.096 50.000 0.00 0.00 0.00 3.34
779 782 3.269592 TGAAGAGAAGGGGAACAGGTA 57.730 47.619 0.00 0.00 0.00 3.08
780 783 2.118403 TGAAGAGAAGGGGAACAGGT 57.882 50.000 0.00 0.00 0.00 4.00
781 784 2.843113 AGATGAAGAGAAGGGGAACAGG 59.157 50.000 0.00 0.00 0.00 4.00
782 785 4.566426 AAGATGAAGAGAAGGGGAACAG 57.434 45.455 0.00 0.00 0.00 3.16
783 786 4.225267 GGTAAGATGAAGAGAAGGGGAACA 59.775 45.833 0.00 0.00 0.00 3.18
784 787 4.680975 CGGTAAGATGAAGAGAAGGGGAAC 60.681 50.000 0.00 0.00 0.00 3.62
785 788 3.451178 CGGTAAGATGAAGAGAAGGGGAA 59.549 47.826 0.00 0.00 0.00 3.97
786 789 3.031736 CGGTAAGATGAAGAGAAGGGGA 58.968 50.000 0.00 0.00 0.00 4.81
787 790 3.031736 TCGGTAAGATGAAGAGAAGGGG 58.968 50.000 0.00 0.00 0.00 4.79
788 791 4.946478 ATCGGTAAGATGAAGAGAAGGG 57.054 45.455 0.00 0.00 38.36 3.95
789 792 6.435904 AGGATATCGGTAAGATGAAGAGAAGG 59.564 42.308 0.00 0.00 40.40 3.46
790 793 7.175816 TCAGGATATCGGTAAGATGAAGAGAAG 59.824 40.741 0.00 0.00 40.40 2.85
791 794 7.004691 TCAGGATATCGGTAAGATGAAGAGAA 58.995 38.462 0.00 0.00 40.40 2.87
792 795 6.543735 TCAGGATATCGGTAAGATGAAGAGA 58.456 40.000 0.00 0.00 40.40 3.10
793 796 6.825944 TCAGGATATCGGTAAGATGAAGAG 57.174 41.667 0.00 0.00 40.40 2.85
794 797 7.597288 TTTCAGGATATCGGTAAGATGAAGA 57.403 36.000 0.00 0.00 40.40 2.87
795 798 8.839310 AATTTCAGGATATCGGTAAGATGAAG 57.161 34.615 0.00 0.00 40.40 3.02
796 799 9.056005 CAAATTTCAGGATATCGGTAAGATGAA 57.944 33.333 0.00 0.00 40.40 2.57
797 800 8.428852 TCAAATTTCAGGATATCGGTAAGATGA 58.571 33.333 0.00 0.00 40.40 2.92
798 801 8.607441 TCAAATTTCAGGATATCGGTAAGATG 57.393 34.615 0.00 0.00 40.40 2.90
799 802 9.799106 ATTCAAATTTCAGGATATCGGTAAGAT 57.201 29.630 0.00 0.00 43.19 2.40
810 813 9.887862 AGGGTCATAATATTCAAATTTCAGGAT 57.112 29.630 0.00 0.00 0.00 3.24
837 840 1.551430 TCGGAACCGGTGATGTAATGT 59.449 47.619 8.52 0.00 40.25 2.71
867 874 9.959749 GTTTACAACAGGATCACAAAGAATAAA 57.040 29.630 0.00 0.00 0.00 1.40
875 886 4.035792 CCAACGTTTACAACAGGATCACAA 59.964 41.667 0.00 0.00 0.00 3.33
894 909 1.037579 GGCTGCTATGAACCCCCAAC 61.038 60.000 0.00 0.00 0.00 3.77
916 938 6.030548 TCTAATTCAGTTGAGACACTCAGG 57.969 41.667 0.00 0.00 41.75 3.86
968 998 9.896645 AATCAGCATAAAGTAAGATGAAGAGAA 57.103 29.630 0.00 0.00 0.00 2.87
1199 1231 4.376340 ACAAAGAACTGAAAGGCACAAG 57.624 40.909 0.00 0.00 39.30 3.16
1415 1458 9.658799 AGTGATGATTACTGTTATGGCATATAC 57.341 33.333 8.24 9.86 0.00 1.47
1430 1473 5.121811 ACATCAGCTGGAAGTGATGATTAC 58.878 41.667 15.13 0.00 46.21 1.89
1431 1474 5.363562 ACATCAGCTGGAAGTGATGATTA 57.636 39.130 15.13 0.00 46.21 1.75
1434 1477 3.708403 AACATCAGCTGGAAGTGATGA 57.292 42.857 15.13 0.00 46.21 2.92
1439 1482 7.172190 CGATCAAATATAACATCAGCTGGAAGT 59.828 37.037 15.13 7.33 35.30 3.01
1465 1511 2.632377 TGCTCGAGATGGAAATGGAAC 58.368 47.619 18.75 0.00 0.00 3.62
1481 1527 6.746364 CAGCTGACATTTTTCTAGATTTGCTC 59.254 38.462 8.42 0.00 0.00 4.26
1487 1533 9.372369 GTTACTACAGCTGACATTTTTCTAGAT 57.628 33.333 23.35 0.00 0.00 1.98
1493 1539 9.301153 CTTTTTGTTACTACAGCTGACATTTTT 57.699 29.630 23.35 0.00 35.28 1.94
1500 1546 4.878971 TGCACTTTTTGTTACTACAGCTGA 59.121 37.500 23.35 2.95 35.28 4.26
1504 1550 6.475402 CCCTTTTGCACTTTTTGTTACTACAG 59.525 38.462 0.00 0.00 35.28 2.74
1509 1555 3.874543 CCCCCTTTTGCACTTTTTGTTAC 59.125 43.478 0.00 0.00 0.00 2.50
1514 1560 1.134128 CAGCCCCCTTTTGCACTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
1518 1564 1.833934 CACAGCCCCCTTTTGCACT 60.834 57.895 0.00 0.00 0.00 4.40
1520 1566 1.531365 CTCACAGCCCCCTTTTGCA 60.531 57.895 0.00 0.00 0.00 4.08
1521 1567 0.827507 TTCTCACAGCCCCCTTTTGC 60.828 55.000 0.00 0.00 0.00 3.68
1522 1568 1.703411 TTTCTCACAGCCCCCTTTTG 58.297 50.000 0.00 0.00 0.00 2.44
1523 1569 2.702270 ATTTCTCACAGCCCCCTTTT 57.298 45.000 0.00 0.00 0.00 2.27
1524 1570 2.702270 AATTTCTCACAGCCCCCTTT 57.298 45.000 0.00 0.00 0.00 3.11
1525 1571 2.158325 TGAAATTTCTCACAGCCCCCTT 60.158 45.455 18.64 0.00 0.00 3.95
1526 1572 1.428912 TGAAATTTCTCACAGCCCCCT 59.571 47.619 18.64 0.00 0.00 4.79
1528 1574 2.751806 CTCTGAAATTTCTCACAGCCCC 59.248 50.000 18.64 0.00 0.00 5.80
1529 1575 3.416156 ACTCTGAAATTTCTCACAGCCC 58.584 45.455 18.64 0.00 0.00 5.19
1530 1576 6.749923 ATTACTCTGAAATTTCTCACAGCC 57.250 37.500 18.64 0.00 0.00 4.85
1531 1577 9.766277 CTAAATTACTCTGAAATTTCTCACAGC 57.234 33.333 18.64 0.00 37.61 4.40
1586 1673 5.437060 ACTTAATACAAGTGGCATACCCTG 58.563 41.667 0.00 0.00 33.59 4.45
1606 1693 9.930693 CTTCTAGAACACCTTCAGTTAATACTT 57.069 33.333 0.00 0.00 30.26 2.24
1662 1749 9.528489 TGGTACTATGCAGTGAATATACATAGA 57.472 33.333 15.77 2.73 41.67 1.98
1664 1751 8.528643 GGTGGTACTATGCAGTGAATATACATA 58.471 37.037 0.00 0.00 36.14 2.29
1914 2152 4.821260 TCAGTTGATTTTAGCTGAAGCACA 59.179 37.500 4.90 0.00 45.16 4.57
1945 2183 1.662629 CTTGAATACTGCTGGTGCTCG 59.337 52.381 0.00 0.00 40.48 5.03
1946 2184 2.012673 CCTTGAATACTGCTGGTGCTC 58.987 52.381 0.00 0.00 40.48 4.26
1947 2185 1.352352 ACCTTGAATACTGCTGGTGCT 59.648 47.619 0.00 0.00 40.48 4.40
1948 2186 1.470098 CACCTTGAATACTGCTGGTGC 59.530 52.381 0.00 0.00 38.49 5.01
1950 2188 2.783135 CACACCTTGAATACTGCTGGT 58.217 47.619 0.00 0.00 0.00 4.00
1978 2216 5.504853 CTCTCTTAGCTTTTCCCCAAGAAT 58.495 41.667 0.00 0.00 33.44 2.40
2007 2245 9.480053 CAAAATTCCCAAACATATATGTGGATC 57.520 33.333 18.94 0.00 41.61 3.36
2015 2253 7.617723 ACAGCCTACAAAATTCCCAAACATATA 59.382 33.333 0.00 0.00 0.00 0.86
2038 2276 2.503331 TGTGGTTGTGGAGCAATACAG 58.497 47.619 0.00 0.00 39.55 2.74
2110 2348 7.700234 TGCGCCTGTGTTGAATTTAAATATTAG 59.300 33.333 4.18 0.00 0.00 1.73
2130 2368 1.462731 TTCCAAATTGCACTGCGCCT 61.463 50.000 4.18 0.00 41.33 5.52
2181 2434 1.190178 ACCGTTGTCCTACCCTGTCC 61.190 60.000 0.00 0.00 0.00 4.02
2260 2513 0.961753 ACGACAGATGCTGACTGACA 59.038 50.000 11.04 0.00 38.55 3.58
2277 2530 2.883574 TCATAGTAGGCCGAAAACACG 58.116 47.619 0.00 0.00 0.00 4.49
2286 2539 2.216898 CAGCTTGCTTCATAGTAGGCC 58.783 52.381 0.00 0.00 39.41 5.19
2307 2560 7.980662 TGAATGCTAAAAATACAACCATCCATG 59.019 33.333 0.00 0.00 0.00 3.66
2308 2561 8.076910 TGAATGCTAAAAATACAACCATCCAT 57.923 30.769 0.00 0.00 0.00 3.41
2332 2591 3.119531 TCGGAATTGCATTGCCTACTTTG 60.120 43.478 6.12 0.00 0.00 2.77
2351 2610 5.302059 TGATTTAGTACCTCTCCAGATTCGG 59.698 44.000 0.00 0.00 0.00 4.30
2353 2612 7.113658 TGTGATTTAGTACCTCTCCAGATTC 57.886 40.000 0.00 0.00 0.00 2.52
2360 2619 5.982516 CAGCAGATGTGATTTAGTACCTCTC 59.017 44.000 0.00 0.00 0.00 3.20
2362 2621 5.665459 ACAGCAGATGTGATTTAGTACCTC 58.335 41.667 0.00 0.00 41.91 3.85
2363 2622 5.683876 ACAGCAGATGTGATTTAGTACCT 57.316 39.130 0.00 0.00 41.91 3.08
2382 2651 7.647715 CCCACTTGATAACAAACTAAAACACAG 59.352 37.037 0.00 0.00 35.49 3.66
2393 2662 5.309543 TCTCCTCTTCCCACTTGATAACAAA 59.690 40.000 0.00 0.00 35.49 2.83
2399 2668 3.729108 TCATCTCCTCTTCCCACTTGAT 58.271 45.455 0.00 0.00 0.00 2.57
2431 2700 2.080286 ACACCGCATCAGTGTTAGAC 57.920 50.000 0.00 0.00 46.07 2.59
2434 2703 4.757657 ACAAATTACACCGCATCAGTGTTA 59.242 37.500 1.43 0.00 46.07 2.41
2439 2708 7.246674 AGTTATACAAATTACACCGCATCAG 57.753 36.000 0.00 0.00 0.00 2.90
2448 2717 9.674068 TGCTGACCATAAGTTATACAAATTACA 57.326 29.630 0.00 0.00 27.85 2.41
2453 2722 9.853555 CAATTTGCTGACCATAAGTTATACAAA 57.146 29.630 0.00 0.00 30.00 2.83
2468 2737 7.862372 TGTCTCTAAAATTGTCAATTTGCTGAC 59.138 33.333 21.36 22.27 45.01 3.51
2473 2742 9.831737 CCTAGTGTCTCTAAAATTGTCAATTTG 57.168 33.333 21.36 11.80 40.05 2.32
2488 2757 3.570550 GTCACAGTTGTCCTAGTGTCTCT 59.429 47.826 0.00 0.00 33.84 3.10
2489 2758 3.318275 TGTCACAGTTGTCCTAGTGTCTC 59.682 47.826 0.00 0.00 33.84 3.36
2490 2759 3.068307 GTGTCACAGTTGTCCTAGTGTCT 59.932 47.826 0.00 0.00 33.84 3.41
2491 2760 3.381949 GTGTCACAGTTGTCCTAGTGTC 58.618 50.000 0.00 0.00 33.84 3.67
2492 2761 2.102588 GGTGTCACAGTTGTCCTAGTGT 59.897 50.000 5.12 0.00 33.84 3.55
2493 2762 2.102420 TGGTGTCACAGTTGTCCTAGTG 59.898 50.000 5.12 0.00 0.00 2.74
2494 2763 2.394632 TGGTGTCACAGTTGTCCTAGT 58.605 47.619 5.12 0.00 0.00 2.57
2495 2764 3.469008 TTGGTGTCACAGTTGTCCTAG 57.531 47.619 5.12 0.00 0.00 3.02
2496 2765 3.916359 TTTGGTGTCACAGTTGTCCTA 57.084 42.857 5.12 0.00 0.00 2.94
2497 2766 2.799126 TTTGGTGTCACAGTTGTCCT 57.201 45.000 5.12 0.00 0.00 3.85
2498 2767 2.034558 CCATTTGGTGTCACAGTTGTCC 59.965 50.000 5.12 0.00 0.00 4.02
2499 2768 3.354089 CCATTTGGTGTCACAGTTGTC 57.646 47.619 5.12 0.00 0.00 3.18
2547 2816 7.066043 TGACGAAGACCTAAAAACAAGCTAAAA 59.934 33.333 0.00 0.00 0.00 1.52
2575 2844 3.731867 GCTGAAAACATAACAGATGCCGG 60.732 47.826 0.00 0.00 34.07 6.13
2601 2870 3.210227 TGCAGCTTGCTTTGTACAGTAA 58.790 40.909 9.12 0.00 45.31 2.24
2605 2874 1.270274 CCATGCAGCTTGCTTTGTACA 59.730 47.619 2.63 0.00 45.31 2.90
2606 2875 1.541147 TCCATGCAGCTTGCTTTGTAC 59.459 47.619 2.63 0.00 45.31 2.90
2607 2876 1.908344 TCCATGCAGCTTGCTTTGTA 58.092 45.000 2.63 0.00 45.31 2.41
2608 2877 1.067142 CATCCATGCAGCTTGCTTTGT 60.067 47.619 2.63 0.00 45.31 2.83
2609 2878 1.640428 CATCCATGCAGCTTGCTTTG 58.360 50.000 2.63 7.02 45.31 2.77
2610 2879 0.535335 CCATCCATGCAGCTTGCTTT 59.465 50.000 2.63 0.00 45.31 3.51
2653 2928 8.432805 AGATTACAGGTTAGTAATTGCATAGCT 58.567 33.333 0.00 0.00 42.93 3.32
2656 2931 8.710239 TCCAGATTACAGGTTAGTAATTGCATA 58.290 33.333 0.00 0.00 42.93 3.14
2670 2945 6.349363 GGTTTAGCACTTTTCCAGATTACAGG 60.349 42.308 0.00 0.00 0.00 4.00
2674 2949 6.065374 TGTGGTTTAGCACTTTTCCAGATTA 58.935 36.000 12.65 0.00 0.00 1.75
2681 2959 3.821841 CCGATGTGGTTTAGCACTTTTC 58.178 45.455 12.65 6.82 0.00 2.29
2694 2972 4.023622 TGTGTTGTATTTTCACCGATGTGG 60.024 41.667 0.00 0.00 42.98 4.17
2716 2998 5.644636 AGCTGTCAAAATTATGGCCAAAATG 59.355 36.000 10.96 3.63 0.00 2.32
2727 3009 4.487948 GCATCAAGCAGCTGTCAAAATTA 58.512 39.130 16.64 0.00 44.79 1.40
2827 3117 4.590222 ACAATCAGCCCCATTATCAATTCC 59.410 41.667 0.00 0.00 0.00 3.01
2886 3177 0.246635 ACGAACGGATGGTCTTCTGG 59.753 55.000 0.00 0.00 0.00 3.86
2952 3243 2.288273 CCTTCGGACATCGGAACTATCC 60.288 54.545 0.00 0.00 42.80 2.59
3059 3350 8.721019 TGAAGCAAAATTTCAAGACAAAGAAT 57.279 26.923 0.00 0.00 31.98 2.40
3061 3352 8.545229 TTTGAAGCAAAATTTCAAGACAAAGA 57.455 26.923 0.00 0.00 43.22 2.52
3198 3505 9.956720 GTAATCAATATTTCAAGGGTCATTCAG 57.043 33.333 0.00 0.00 0.00 3.02
3206 3514 8.834465 CAGTCTCTGTAATCAATATTTCAAGGG 58.166 37.037 0.00 0.00 0.00 3.95
3238 3546 2.156891 TGCGAAAACTAACAGCGATGAC 59.843 45.455 8.12 0.00 0.00 3.06
3298 3606 2.812011 AGTGTGTTTTACCTTGGCGATC 59.188 45.455 0.00 0.00 0.00 3.69
3334 3642 8.060075 GGGTCCATATATACATACTACTGGAGT 58.940 40.741 0.00 0.00 42.69 3.85
3335 3643 8.282982 AGGGTCCATATATACATACTACTGGAG 58.717 40.741 0.00 0.00 32.50 3.86
3336 3644 8.183571 AGGGTCCATATATACATACTACTGGA 57.816 38.462 0.00 0.00 0.00 3.86
3337 3645 8.059461 TGAGGGTCCATATATACATACTACTGG 58.941 40.741 0.00 0.00 0.00 4.00
3338 3646 9.647918 ATGAGGGTCCATATATACATACTACTG 57.352 37.037 0.00 0.00 0.00 2.74
3339 3647 9.647918 CATGAGGGTCCATATATACATACTACT 57.352 37.037 0.00 0.00 0.00 2.57
3340 3648 9.422681 ACATGAGGGTCCATATATACATACTAC 57.577 37.037 0.00 0.00 0.00 2.73
3369 3677 3.519913 ACTCCAGGTAAGAAGATTGACCC 59.480 47.826 0.00 0.00 31.93 4.46
3401 3712 2.910199 ACGATCACAAGATGGTCATGG 58.090 47.619 0.00 0.00 38.63 3.66
3407 3718 1.590238 GAAGCGACGATCACAAGATGG 59.410 52.381 0.00 0.00 36.21 3.51
3420 3731 1.142097 GGCTACTCCCTGAAGCGAC 59.858 63.158 0.00 0.00 37.11 5.19
3427 3738 1.676014 CGAGGTTTTGGCTACTCCCTG 60.676 57.143 0.00 0.00 0.00 4.45
3429 3740 0.392595 CCGAGGTTTTGGCTACTCCC 60.393 60.000 0.00 0.00 0.00 4.30
3433 3744 2.619646 TGTTTTCCGAGGTTTTGGCTAC 59.380 45.455 0.00 0.00 0.00 3.58
3481 3801 0.318441 TCTTGGAGCGAAGACCACAG 59.682 55.000 0.00 0.00 35.58 3.66
3491 3811 2.227388 AGACAAAAAGCATCTTGGAGCG 59.773 45.455 0.00 0.00 35.48 5.03
3540 3881 4.223032 ACTCAACTCCAGTTACCATCGAAT 59.777 41.667 0.00 0.00 36.32 3.34
3553 3894 4.144297 CCTGAATCCAAAACTCAACTCCA 58.856 43.478 0.00 0.00 0.00 3.86
3556 3897 5.300286 CAGAACCTGAATCCAAAACTCAACT 59.700 40.000 0.00 0.00 32.44 3.16
3557 3898 5.299279 TCAGAACCTGAATCCAAAACTCAAC 59.701 40.000 0.00 0.00 37.57 3.18
3676 4018 3.147595 CGGGAGGCGATGTCCTGA 61.148 66.667 1.63 0.00 42.44 3.86
3719 4061 4.326826 TGGCTAAATGTCCAGAGAGTTTG 58.673 43.478 0.00 0.00 0.00 2.93
3721 4063 4.851639 ATGGCTAAATGTCCAGAGAGTT 57.148 40.909 0.00 0.00 35.57 3.01
3722 4064 4.346418 CCTATGGCTAAATGTCCAGAGAGT 59.654 45.833 4.65 0.00 42.62 3.24
3723 4065 4.802248 GCCTATGGCTAAATGTCCAGAGAG 60.802 50.000 4.65 0.00 46.69 3.20
3724 4066 3.071602 GCCTATGGCTAAATGTCCAGAGA 59.928 47.826 4.65 0.00 46.69 3.10
3763 4136 7.064728 CAGATTACATACAGATGCCATGAGATG 59.935 40.741 0.00 0.00 36.43 2.90
3764 4137 7.038516 TCAGATTACATACAGATGCCATGAGAT 60.039 37.037 0.00 0.00 36.43 2.75
3765 4138 6.268387 TCAGATTACATACAGATGCCATGAGA 59.732 38.462 0.00 0.00 36.43 3.27
3768 4141 6.877322 TGATCAGATTACATACAGATGCCATG 59.123 38.462 0.00 0.00 36.43 3.66
3769 4142 7.012661 TGATCAGATTACATACAGATGCCAT 57.987 36.000 0.00 0.00 36.43 4.40
3771 4144 6.933521 ACTTGATCAGATTACATACAGATGCC 59.066 38.462 0.00 0.00 36.43 4.40
3772 4145 7.959689 ACTTGATCAGATTACATACAGATGC 57.040 36.000 0.00 0.00 36.43 3.91
3775 4148 9.942850 TTCAAACTTGATCAGATTACATACAGA 57.057 29.630 0.00 0.00 37.00 3.41
3776 4149 9.979270 GTTCAAACTTGATCAGATTACATACAG 57.021 33.333 0.00 0.00 37.00 2.74
3812 4185 9.533831 AGGGAAGTGTAGAATAAAAATGTCATT 57.466 29.630 0.00 0.00 0.00 2.57
3819 4195 6.775629 AGCACAAGGGAAGTGTAGAATAAAAA 59.224 34.615 0.00 0.00 39.17 1.94
3824 4200 3.307762 GGAGCACAAGGGAAGTGTAGAAT 60.308 47.826 0.00 0.00 39.17 2.40
3827 4203 1.673033 CGGAGCACAAGGGAAGTGTAG 60.673 57.143 0.00 0.00 39.17 2.74
3829 4205 1.071471 CGGAGCACAAGGGAAGTGT 59.929 57.895 0.00 0.00 39.17 3.55
3834 4210 2.099652 CTGACACGGAGCACAAGGGA 62.100 60.000 0.00 0.00 0.00 4.20
3835 4211 1.669115 CTGACACGGAGCACAAGGG 60.669 63.158 0.00 0.00 0.00 3.95
3841 4217 0.176910 TTCACAACTGACACGGAGCA 59.823 50.000 0.00 0.00 0.00 4.26
3846 4222 2.872245 ACCATCTTTCACAACTGACACG 59.128 45.455 0.00 0.00 0.00 4.49
3848 4224 3.876914 GTCACCATCTTTCACAACTGACA 59.123 43.478 0.00 0.00 0.00 3.58
3851 4227 3.304257 GCTGTCACCATCTTTCACAACTG 60.304 47.826 0.00 0.00 0.00 3.16
3854 4230 2.929641 TGCTGTCACCATCTTTCACAA 58.070 42.857 0.00 0.00 0.00 3.33
3855 4231 2.636647 TGCTGTCACCATCTTTCACA 57.363 45.000 0.00 0.00 0.00 3.58
3856 4232 2.880890 ACTTGCTGTCACCATCTTTCAC 59.119 45.455 0.00 0.00 0.00 3.18
3857 4233 3.213206 ACTTGCTGTCACCATCTTTCA 57.787 42.857 0.00 0.00 0.00 2.69
3858 4234 4.574599 AAACTTGCTGTCACCATCTTTC 57.425 40.909 0.00 0.00 0.00 2.62
3859 4235 4.685924 CAAAACTTGCTGTCACCATCTTT 58.314 39.130 0.00 0.00 0.00 2.52
3860 4236 4.311816 CAAAACTTGCTGTCACCATCTT 57.688 40.909 0.00 0.00 0.00 2.40
3861 4237 3.996150 CAAAACTTGCTGTCACCATCT 57.004 42.857 0.00 0.00 0.00 2.90
3890 4266 4.569966 CGAGCATCCATATTCTAATCCTGC 59.430 45.833 0.00 0.00 0.00 4.85
3894 4270 6.314648 TGATTGCGAGCATCCATATTCTAATC 59.685 38.462 0.00 0.00 0.00 1.75
3896 4272 5.550290 TGATTGCGAGCATCCATATTCTAA 58.450 37.500 0.00 0.00 0.00 2.10
3897 4273 5.151297 TGATTGCGAGCATCCATATTCTA 57.849 39.130 0.00 0.00 0.00 2.10
3898 4274 4.001652 CTGATTGCGAGCATCCATATTCT 58.998 43.478 0.00 0.00 0.00 2.40
3901 4277 3.332919 GACTGATTGCGAGCATCCATAT 58.667 45.455 0.00 0.00 0.00 1.78
3902 4278 2.548707 GGACTGATTGCGAGCATCCATA 60.549 50.000 12.90 0.00 0.00 2.74
3903 4279 1.590932 GACTGATTGCGAGCATCCAT 58.409 50.000 0.00 0.00 0.00 3.41
3904 4280 0.462581 GGACTGATTGCGAGCATCCA 60.463 55.000 12.90 5.16 0.00 3.41
3905 4281 1.493950 CGGACTGATTGCGAGCATCC 61.494 60.000 0.00 9.42 42.80 3.51
3906 4282 0.528466 TCGGACTGATTGCGAGCATC 60.528 55.000 0.00 0.03 44.07 3.91
3908 4284 2.969827 TCGGACTGATTGCGAGCA 59.030 55.556 0.00 0.00 44.07 4.26
3921 4297 4.265904 TCTAAACTTGCTGTCATTCGGA 57.734 40.909 0.00 0.00 0.00 4.55
3922 4298 5.551760 ATTCTAAACTTGCTGTCATTCGG 57.448 39.130 0.00 0.00 0.00 4.30
3923 4299 9.559958 AAAATATTCTAAACTTGCTGTCATTCG 57.440 29.630 0.00 0.00 0.00 3.34
3953 4445 6.957920 TTGAAATTGTTCTGTGAATCAGGA 57.042 33.333 0.00 0.00 43.76 3.86
3976 4492 7.473735 TCCATCGATCTTTGCTTAGATCTAT 57.526 36.000 19.53 14.23 45.42 1.98
3985 4501 2.634815 AGCATCCATCGATCTTTGCT 57.365 45.000 15.97 15.97 0.00 3.91
3986 4502 2.615447 TGAAGCATCCATCGATCTTTGC 59.385 45.455 12.70 12.70 0.00 3.68
3987 4503 4.124970 TCTGAAGCATCCATCGATCTTTG 58.875 43.478 0.00 0.00 0.00 2.77
3994 4525 2.625737 ACTGTTCTGAAGCATCCATCG 58.374 47.619 0.00 0.00 0.00 3.84
3995 4527 5.016051 TCTACTGTTCTGAAGCATCCATC 57.984 43.478 0.00 0.00 0.00 3.51
4024 4556 7.214467 TCTGTGTCCTGATTATTTTTGTTCC 57.786 36.000 0.00 0.00 0.00 3.62
4028 4560 6.094603 CCTCCTCTGTGTCCTGATTATTTTTG 59.905 42.308 0.00 0.00 0.00 2.44
4033 4565 4.271807 TCCTCCTCTGTGTCCTGATTAT 57.728 45.455 0.00 0.00 0.00 1.28
4034 4566 3.757947 TCCTCCTCTGTGTCCTGATTA 57.242 47.619 0.00 0.00 0.00 1.75
4035 4567 2.630889 TCCTCCTCTGTGTCCTGATT 57.369 50.000 0.00 0.00 0.00 2.57
4047 4579 2.829741 AGCTGCGAAATATCCTCCTC 57.170 50.000 0.00 0.00 0.00 3.71
4072 4604 7.359181 CGGTTTAAATGGAAGAAAATGCAAGTC 60.359 37.037 0.00 0.00 0.00 3.01
4073 4605 6.423604 CGGTTTAAATGGAAGAAAATGCAAGT 59.576 34.615 0.00 0.00 0.00 3.16
4074 4606 6.644592 TCGGTTTAAATGGAAGAAAATGCAAG 59.355 34.615 0.00 0.00 0.00 4.01
4075 4607 6.516718 TCGGTTTAAATGGAAGAAAATGCAA 58.483 32.000 0.00 0.00 0.00 4.08
4076 4608 6.090483 TCGGTTTAAATGGAAGAAAATGCA 57.910 33.333 0.00 0.00 0.00 3.96
4077 4609 6.156519 ACTCGGTTTAAATGGAAGAAAATGC 58.843 36.000 0.00 0.00 0.00 3.56
4078 4610 7.865385 TGAACTCGGTTTAAATGGAAGAAAATG 59.135 33.333 0.00 0.00 0.00 2.32
4079 4611 7.947282 TGAACTCGGTTTAAATGGAAGAAAAT 58.053 30.769 0.00 0.00 0.00 1.82
4081 4613 6.945938 TGAACTCGGTTTAAATGGAAGAAA 57.054 33.333 0.00 0.00 0.00 2.52
4085 4617 6.452494 TGTTTGAACTCGGTTTAAATGGAA 57.548 33.333 8.96 0.00 34.52 3.53
4097 4629 7.279981 TGTTGGAATATCCTATGTTTGAACTCG 59.720 37.037 0.00 0.00 37.46 4.18
4179 4717 7.807977 ACAACATGTGTTATCTTTCAGTCTT 57.192 32.000 0.00 0.00 37.01 3.01
4281 4822 0.862701 GTCGTCGTGTGTGTCGTTGA 60.863 55.000 0.00 0.00 0.00 3.18
4282 4823 0.864377 AGTCGTCGTGTGTGTCGTTG 60.864 55.000 0.00 0.00 0.00 4.10
4311 4854 5.808366 AGTTATCTTCAGTTCCTGTGTCA 57.192 39.130 0.00 0.00 32.61 3.58
4312 4855 5.106908 GCAAGTTATCTTCAGTTCCTGTGTC 60.107 44.000 0.00 0.00 32.61 3.67
4314 4857 4.999950 AGCAAGTTATCTTCAGTTCCTGTG 59.000 41.667 0.00 0.00 32.61 3.66
4315 4858 4.999950 CAGCAAGTTATCTTCAGTTCCTGT 59.000 41.667 0.00 0.00 32.61 4.00
4316 4859 5.121454 GTCAGCAAGTTATCTTCAGTTCCTG 59.879 44.000 0.00 0.00 0.00 3.86
4318 4861 4.092091 CGTCAGCAAGTTATCTTCAGTTCC 59.908 45.833 0.00 0.00 0.00 3.62
4319 4862 4.923871 TCGTCAGCAAGTTATCTTCAGTTC 59.076 41.667 0.00 0.00 0.00 3.01
4320 4863 4.883083 TCGTCAGCAAGTTATCTTCAGTT 58.117 39.130 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.