Multiple sequence alignment - TraesCS5D01G020500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G020500 chr5D 100.000 3100 0 0 1 3100 13173703 13170604 0.000000e+00 5725.0
1 TraesCS5D01G020500 chr5D 91.272 1077 78 7 1283 2357 399706708 399705646 0.000000e+00 1454.0
2 TraesCS5D01G020500 chr5D 90.295 237 23 0 2759 2995 399705652 399705416 8.350000e-81 311.0
3 TraesCS5D01G020500 chr4D 94.305 1194 66 2 1158 2349 46138719 46137526 0.000000e+00 1827.0
4 TraesCS5D01G020500 chr2D 93.538 1207 69 7 1140 2343 582871466 582872666 0.000000e+00 1788.0
5 TraesCS5D01G020500 chr2D 92.620 664 44 2 27 689 648169991 648169332 0.000000e+00 950.0
6 TraesCS5D01G020500 chr7B 91.482 1221 100 4 1140 2357 747107282 747108501 0.000000e+00 1676.0
7 TraesCS5D01G020500 chr7B 91.739 230 19 0 2757 2986 641951337 641951566 1.390000e-83 320.0
8 TraesCS5D01G020500 chr2B 91.148 1220 78 10 1140 2357 50247402 50248593 0.000000e+00 1628.0
9 TraesCS5D01G020500 chr2B 93.740 655 30 3 1 654 50223868 50224512 0.000000e+00 972.0
10 TraesCS5D01G020500 chr2B 88.905 676 50 9 26 680 781773504 781774175 0.000000e+00 809.0
11 TraesCS5D01G020500 chr2B 92.010 388 23 2 210 589 782127159 782126772 3.520000e-149 538.0
12 TraesCS5D01G020500 chr2B 89.189 444 22 2 685 1104 50224973 50225414 5.890000e-147 531.0
13 TraesCS5D01G020500 chr2B 91.525 236 20 0 2757 2992 411890508 411890743 2.980000e-85 326.0
14 TraesCS5D01G020500 chr2B 90.678 236 22 0 2757 2992 50248585 50248820 6.450000e-82 315.0
15 TraesCS5D01G020500 chr2B 86.034 179 18 4 1 175 782127337 782127162 5.280000e-43 185.0
16 TraesCS5D01G020500 chr4B 90.633 1217 82 9 1143 2357 547409624 547408438 0.000000e+00 1587.0
17 TraesCS5D01G020500 chr4B 95.942 690 25 2 1 689 455977408 455978095 0.000000e+00 1116.0
18 TraesCS5D01G020500 chr4B 93.607 657 35 6 1 655 547412572 547411921 0.000000e+00 974.0
19 TraesCS5D01G020500 chr4B 89.095 486 25 1 685 1142 455978623 455979108 2.070000e-161 579.0
20 TraesCS5D01G020500 chr4B 88.660 485 27 1 686 1142 547410156 547409672 1.610000e-157 566.0
21 TraesCS5D01G020500 chr4B 92.208 231 18 0 2757 2987 547408446 547408216 8.290000e-86 327.0
22 TraesCS5D01G020500 chr4B 97.619 42 1 0 648 689 547410719 547410678 4.290000e-09 73.1
23 TraesCS5D01G020500 chr5A 92.122 1079 81 4 1283 2357 288890505 288891583 0.000000e+00 1519.0
24 TraesCS5D01G020500 chr5A 93.046 417 19 5 2351 2759 573054879 573054465 4.420000e-168 601.0
25 TraesCS5D01G020500 chr1A 91.458 1077 90 2 1283 2357 145814545 145813469 0.000000e+00 1478.0
26 TraesCS5D01G020500 chr1A 95.556 90 4 0 1149 1238 523756286 523756197 8.960000e-31 145.0
27 TraesCS5D01G020500 chr6B 91.055 1062 86 5 1299 2357 148307042 148305987 0.000000e+00 1426.0
28 TraesCS5D01G020500 chr6B 94.203 690 35 3 1 689 22170175 22170860 0.000000e+00 1048.0
29 TraesCS5D01G020500 chr6B 91.298 701 47 7 1 689 114734981 114734283 0.000000e+00 944.0
30 TraesCS5D01G020500 chr6B 88.477 486 28 1 685 1142 22171388 22171873 2.090000e-156 562.0
31 TraesCS5D01G020500 chr6B 88.477 486 28 1 685 1142 114733757 114733272 2.090000e-156 562.0
32 TraesCS5D01G020500 chr6B 91.102 236 21 0 2757 2992 22173101 22173336 1.390000e-83 320.0
33 TraesCS5D01G020500 chr6B 90.265 113 11 0 1030 1142 148307191 148307079 6.930000e-32 148.0
34 TraesCS5D01G020500 chr7A 91.270 1008 84 4 1140 2146 56661057 56662061 0.000000e+00 1371.0
35 TraesCS5D01G020500 chr7A 91.400 407 28 7 2358 2760 596327459 596327862 4.520000e-153 551.0
36 TraesCS5D01G020500 chr7A 91.364 220 14 3 2142 2357 56719626 56719844 2.340000e-76 296.0
37 TraesCS5D01G020500 chr7A 97.368 38 1 0 685 722 17844735 17844698 7.180000e-07 65.8
38 TraesCS5D01G020500 chr2A 95.050 404 13 2 2358 2756 33688699 33689100 2.030000e-176 628.0
39 TraesCS5D01G020500 chr2A 92.574 404 25 4 2356 2756 174751870 174751469 2.680000e-160 575.0
40 TraesCS5D01G020500 chr6D 95.037 403 11 6 2358 2756 79703143 79703540 2.620000e-175 625.0
41 TraesCS5D01G020500 chrUn 93.781 402 17 4 2358 2756 134232802 134232406 5.720000e-167 597.0
42 TraesCS5D01G020500 chrUn 88.270 341 27 3 356 683 31225087 31225427 2.240000e-106 396.0
43 TraesCS5D01G020500 chrUn 85.616 292 31 6 356 646 31226652 31226933 2.340000e-76 296.0
44 TraesCS5D01G020500 chr7D 93.086 405 20 6 2358 2757 176882490 176882089 1.240000e-163 586.0
45 TraesCS5D01G020500 chr7D 92.373 118 9 0 1025 1142 11435373 11435256 5.320000e-38 169.0
46 TraesCS5D01G020500 chr4A 92.327 404 22 3 2356 2757 485711052 485710656 1.610000e-157 566.0
47 TraesCS5D01G020500 chr4A 89.516 124 11 1 685 806 714434234 714434357 4.140000e-34 156.0
48 TraesCS5D01G020500 chr5B 89.976 409 32 5 2356 2757 705985342 705984936 1.270000e-143 520.0
49 TraesCS5D01G020500 chr5B 92.672 232 17 0 2757 2988 571953310 571953541 4.950000e-88 335.0
50 TraesCS5D01G020500 chr6A 91.139 237 19 2 2757 2992 585275 585510 1.390000e-83 320.0
51 TraesCS5D01G020500 chr6A 97.059 68 2 0 3033 3100 505014842 505014909 7.020000e-22 115.0
52 TraesCS5D01G020500 chr3A 90.678 236 22 0 2757 2992 298800582 298800817 6.450000e-82 315.0
53 TraesCS5D01G020500 chr3A 92.035 113 9 0 1030 1142 678042762 678042650 3.200000e-35 159.0
54 TraesCS5D01G020500 chr3D 85.841 113 13 2 1030 1142 10934348 10934239 1.950000e-22 117.0
55 TraesCS5D01G020500 chr3D 85.345 116 14 2 1027 1142 588695222 588695334 1.950000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G020500 chr5D 13170604 13173703 3099 True 5725.000000 5725 100.000000 1 3100 1 chr5D.!!$R1 3099
1 TraesCS5D01G020500 chr5D 399705416 399706708 1292 True 882.500000 1454 90.783500 1283 2995 2 chr5D.!!$R2 1712
2 TraesCS5D01G020500 chr4D 46137526 46138719 1193 True 1827.000000 1827 94.305000 1158 2349 1 chr4D.!!$R1 1191
3 TraesCS5D01G020500 chr2D 582871466 582872666 1200 False 1788.000000 1788 93.538000 1140 2343 1 chr2D.!!$F1 1203
4 TraesCS5D01G020500 chr2D 648169332 648169991 659 True 950.000000 950 92.620000 27 689 1 chr2D.!!$R1 662
5 TraesCS5D01G020500 chr7B 747107282 747108501 1219 False 1676.000000 1676 91.482000 1140 2357 1 chr7B.!!$F2 1217
6 TraesCS5D01G020500 chr2B 50247402 50248820 1418 False 971.500000 1628 90.913000 1140 2992 2 chr2B.!!$F4 1852
7 TraesCS5D01G020500 chr2B 781773504 781774175 671 False 809.000000 809 88.905000 26 680 1 chr2B.!!$F2 654
8 TraesCS5D01G020500 chr2B 50223868 50225414 1546 False 751.500000 972 91.464500 1 1104 2 chr2B.!!$F3 1103
9 TraesCS5D01G020500 chr2B 782126772 782127337 565 True 361.500000 538 89.022000 1 589 2 chr2B.!!$R1 588
10 TraesCS5D01G020500 chr4B 455977408 455979108 1700 False 847.500000 1116 92.518500 1 1142 2 chr4B.!!$F1 1141
11 TraesCS5D01G020500 chr4B 547408216 547412572 4356 True 705.420000 1587 92.545400 1 2987 5 chr4B.!!$R1 2986
12 TraesCS5D01G020500 chr5A 288890505 288891583 1078 False 1519.000000 1519 92.122000 1283 2357 1 chr5A.!!$F1 1074
13 TraesCS5D01G020500 chr1A 145813469 145814545 1076 True 1478.000000 1478 91.458000 1283 2357 1 chr1A.!!$R1 1074
14 TraesCS5D01G020500 chr6B 148305987 148307191 1204 True 787.000000 1426 90.660000 1030 2357 2 chr6B.!!$R2 1327
15 TraesCS5D01G020500 chr6B 114733272 114734981 1709 True 753.000000 944 89.887500 1 1142 2 chr6B.!!$R1 1141
16 TraesCS5D01G020500 chr6B 22170175 22173336 3161 False 643.333333 1048 91.260667 1 2992 3 chr6B.!!$F1 2991
17 TraesCS5D01G020500 chr7A 56661057 56662061 1004 False 1371.000000 1371 91.270000 1140 2146 1 chr7A.!!$F1 1006
18 TraesCS5D01G020500 chrUn 31225087 31226933 1846 False 346.000000 396 86.943000 356 683 2 chrUn.!!$F1 327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 123 1.079503 GTCACAGCGTTTGATCTCCC 58.920 55.000 0.0 0.0 0.00 4.30 F
205 229 1.281867 CAGTATGCTTCCCCAAGTGGA 59.718 52.381 0.0 0.0 37.39 4.02 F
1948 5386 0.178068 ACAGCGTCACAACTCAAGGT 59.822 50.000 0.0 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 4837 0.103572 ATGGCTCGGCATTTGCATTC 59.896 50.000 4.74 0.0 44.36 2.67 R
2048 5486 1.196808 TCCAAAAATTCGCTCACTCGC 59.803 47.619 0.00 0.0 0.00 5.03 R
3062 6506 0.179037 ATGGATGGAGATGGCGTGTG 60.179 55.000 0.00 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 123 1.079503 GTCACAGCGTTTGATCTCCC 58.920 55.000 0.00 0.00 0.00 4.30
164 180 2.036346 GCTGGGATGCACTTTTGTTCTT 59.964 45.455 0.00 0.00 0.00 2.52
205 229 1.281867 CAGTATGCTTCCCCAAGTGGA 59.718 52.381 0.00 0.00 37.39 4.02
206 230 2.092212 CAGTATGCTTCCCCAAGTGGAT 60.092 50.000 0.00 0.00 37.39 3.41
410 2019 2.845363 TGTCTGAAGAAGCATCTGCA 57.155 45.000 0.00 0.00 45.16 4.41
416 2025 5.353678 GTCTGAAGAAGCATCTGCAAGTATT 59.646 40.000 0.46 0.00 40.86 1.89
530 2140 2.107141 GGCGGCTACTCGAAGCAT 59.893 61.111 11.06 0.00 44.64 3.79
595 2206 7.933223 AGGTTTATGGGCTAATAATAGAGCAT 58.067 34.615 0.00 0.00 40.64 3.79
612 2223 6.299805 AGAGCATAACTGTCTCCAAATGTA 57.700 37.500 0.00 0.00 0.00 2.29
683 3503 7.710044 TGATTCAAATGTTAAAAGCTGAAGCAA 59.290 29.630 4.90 0.00 45.16 3.91
744 4096 4.648762 AGATAGTGCTCTGTAGTGCATTCT 59.351 41.667 11.24 10.79 44.75 2.40
753 4105 3.273434 TGTAGTGCATTCTGATTCAGCC 58.727 45.455 8.89 0.00 0.00 4.85
832 4184 3.230134 CAAGATGGGACCCAACTTCAAA 58.770 45.455 28.40 0.00 43.20 2.69
841 4193 1.615392 CCCAACTTCAAAAGAGGCCAG 59.385 52.381 5.01 0.00 0.00 4.85
873 4225 3.487202 CCGCGGAACATCACGGTG 61.487 66.667 24.07 0.56 40.77 4.94
929 4281 9.842775 TGTTTAATCAGCTGATCTCATTCTAAT 57.157 29.630 28.83 12.04 32.75 1.73
955 4307 3.028094 AGTGATGGTGGTACCGAGTAT 57.972 47.619 7.57 0.00 42.58 2.12
960 4312 2.579873 TGGTGGTACCGAGTATAGAGC 58.420 52.381 7.57 0.00 42.58 4.09
988 4340 2.026641 ACAGACACATGTGCAAAGCTT 58.973 42.857 25.68 3.99 30.46 3.74
1111 4495 5.220605 CCGTATTGGTAAACTAGCTCTTTGC 60.221 44.000 0.00 0.00 43.29 3.68
1112 4496 5.350365 CGTATTGGTAAACTAGCTCTTTGCA 59.650 40.000 0.00 0.00 45.94 4.08
1141 4572 5.776173 AGTACCTAACGATCTCATCCTTG 57.224 43.478 0.00 0.00 0.00 3.61
1165 4596 5.631119 AGCACAGTAGTTTTGGGTTTCTAT 58.369 37.500 0.00 0.00 0.00 1.98
1196 4627 3.375699 GGGATTCAGAGTTCCACCTCTA 58.624 50.000 4.35 0.00 39.81 2.43
1264 4695 2.091885 GGGAATGGGGATTGCTAGTTCA 60.092 50.000 0.00 0.00 0.00 3.18
1301 4732 7.454380 TCAGAATAATGTTTGGGTTTTCCTCAT 59.546 33.333 0.00 0.00 40.46 2.90
1405 4837 6.215431 TCCCCAATTGTATATCTGTCCCTATG 59.785 42.308 4.43 0.00 0.00 2.23
1463 4895 6.486657 TGCTCTACATTATATTTTCACTGCCC 59.513 38.462 0.00 0.00 0.00 5.36
1512 4944 9.874205 TCTTTTTCACTGATTGTCTTTTTCATT 57.126 25.926 0.00 0.00 0.00 2.57
1514 4946 8.422973 TTTTCACTGATTGTCTTTTTCATTGG 57.577 30.769 0.00 0.00 0.00 3.16
1536 4968 1.610363 TGCACCGCATTACTTTTCCA 58.390 45.000 0.00 0.00 31.71 3.53
1545 4977 4.730042 CGCATTACTTTTCCATGTCATTCG 59.270 41.667 0.00 0.00 0.00 3.34
1565 4997 7.442364 TCATTCGTCTGAAGAATCTGAAGTTTT 59.558 33.333 14.56 0.00 37.57 2.43
1761 5193 5.061853 CCCGAGAGATGATCAACATTTCAT 58.938 41.667 0.00 0.00 40.96 2.57
1765 5197 9.597170 CCGAGAGATGATCAACATTTCATATAT 57.403 33.333 0.00 0.00 40.96 0.86
1832 5266 2.355115 GGATTTCAGGGTGCGGGT 59.645 61.111 0.00 0.00 0.00 5.28
1866 5304 3.329542 TTCCTCCATCCGCTGGTGC 62.330 63.158 2.61 0.00 46.08 5.01
1948 5386 0.178068 ACAGCGTCACAACTCAAGGT 59.822 50.000 0.00 0.00 0.00 3.50
1983 5421 1.170290 TCAAGTGTGGCTCGTCGAGA 61.170 55.000 26.11 2.70 0.00 4.04
2014 5452 1.522806 TTTCGTCGCAGTTGCAGGT 60.523 52.632 4.84 0.00 42.21 4.00
2112 5550 5.979993 TCAGTCTCTGACGTCTAGAAGTAT 58.020 41.667 17.92 4.51 35.39 2.12
2244 5682 7.777095 AGTTGACTCTACAATGAGGAACTATC 58.223 38.462 0.00 0.00 38.23 2.08
2278 5718 5.582269 ACGACAATTGTGTGATAGAATGGAG 59.418 40.000 17.58 0.00 38.41 3.86
2357 5801 6.072397 ACTGCTCGCTACTAGTATTTAGGATG 60.072 42.308 2.33 0.00 0.00 3.51
2358 5802 5.183331 TGCTCGCTACTAGTATTTAGGATGG 59.817 44.000 2.33 0.00 0.00 3.51
2359 5803 5.393243 GCTCGCTACTAGTATTTAGGATGGG 60.393 48.000 2.33 0.00 0.00 4.00
2360 5804 5.884322 TCGCTACTAGTATTTAGGATGGGA 58.116 41.667 2.33 0.50 0.00 4.37
2361 5805 6.309357 TCGCTACTAGTATTTAGGATGGGAA 58.691 40.000 2.33 0.00 0.00 3.97
2362 5806 6.779049 TCGCTACTAGTATTTAGGATGGGAAA 59.221 38.462 2.33 0.00 0.00 3.13
2363 5807 7.039923 TCGCTACTAGTATTTAGGATGGGAAAG 60.040 40.741 2.33 0.00 0.00 2.62
2364 5808 7.387643 GCTACTAGTATTTAGGATGGGAAAGG 58.612 42.308 2.33 0.00 0.00 3.11
2365 5809 7.016366 GCTACTAGTATTTAGGATGGGAAAGGT 59.984 40.741 2.33 0.00 0.00 3.50
2366 5810 7.138054 ACTAGTATTTAGGATGGGAAAGGTG 57.862 40.000 0.00 0.00 0.00 4.00
2367 5811 6.677076 ACTAGTATTTAGGATGGGAAAGGTGT 59.323 38.462 0.00 0.00 0.00 4.16
2368 5812 5.755849 AGTATTTAGGATGGGAAAGGTGTG 58.244 41.667 0.00 0.00 0.00 3.82
2369 5813 4.946160 ATTTAGGATGGGAAAGGTGTGA 57.054 40.909 0.00 0.00 0.00 3.58
2370 5814 3.713826 TTAGGATGGGAAAGGTGTGAC 57.286 47.619 0.00 0.00 0.00 3.67
2371 5815 1.444933 AGGATGGGAAAGGTGTGACA 58.555 50.000 0.00 0.00 0.00 3.58
2372 5816 1.352352 AGGATGGGAAAGGTGTGACAG 59.648 52.381 0.00 0.00 0.00 3.51
2373 5817 1.168714 GATGGGAAAGGTGTGACAGC 58.831 55.000 6.68 6.68 0.00 4.40
2374 5818 0.773644 ATGGGAAAGGTGTGACAGCT 59.226 50.000 12.08 12.08 44.48 4.24
2375 5819 0.108585 TGGGAAAGGTGTGACAGCTC 59.891 55.000 18.37 6.62 41.59 4.09
2376 5820 0.606673 GGGAAAGGTGTGACAGCTCC 60.607 60.000 18.37 15.28 41.59 4.70
2377 5821 0.606673 GGAAAGGTGTGACAGCTCCC 60.607 60.000 18.37 17.25 41.59 4.30
2378 5822 0.951040 GAAAGGTGTGACAGCTCCCG 60.951 60.000 18.37 0.00 41.59 5.14
2379 5823 2.397413 AAAGGTGTGACAGCTCCCGG 62.397 60.000 18.37 0.00 41.59 5.73
2380 5824 4.394712 GGTGTGACAGCTCCCGGG 62.395 72.222 16.85 16.85 0.00 5.73
2381 5825 3.626924 GTGTGACAGCTCCCGGGT 61.627 66.667 22.86 0.00 0.00 5.28
2385 5829 4.767255 GACAGCTCCCGGGTGCAG 62.767 72.222 40.44 35.86 46.30 4.41
2403 5847 3.558674 GGGACACCCTCATGAACAG 57.441 57.895 0.00 0.00 41.34 3.16
2404 5848 0.693049 GGGACACCCTCATGAACAGT 59.307 55.000 0.00 0.00 41.34 3.55
2405 5849 1.906574 GGGACACCCTCATGAACAGTA 59.093 52.381 0.00 0.00 41.34 2.74
2406 5850 2.304761 GGGACACCCTCATGAACAGTAA 59.695 50.000 0.00 0.00 41.34 2.24
2407 5851 3.335579 GGACACCCTCATGAACAGTAAC 58.664 50.000 0.00 0.00 0.00 2.50
2408 5852 3.008049 GGACACCCTCATGAACAGTAACT 59.992 47.826 0.00 0.00 0.00 2.24
2409 5853 4.505039 GGACACCCTCATGAACAGTAACTT 60.505 45.833 0.00 0.00 0.00 2.66
2410 5854 4.642429 ACACCCTCATGAACAGTAACTTC 58.358 43.478 0.00 0.00 0.00 3.01
2411 5855 4.102524 ACACCCTCATGAACAGTAACTTCA 59.897 41.667 0.00 0.00 32.24 3.02
2412 5856 5.063204 CACCCTCATGAACAGTAACTTCAA 58.937 41.667 0.00 0.00 31.48 2.69
2413 5857 5.530915 CACCCTCATGAACAGTAACTTCAAA 59.469 40.000 0.00 0.00 31.48 2.69
2414 5858 6.039270 CACCCTCATGAACAGTAACTTCAAAA 59.961 38.462 0.00 0.00 31.48 2.44
2415 5859 6.039382 ACCCTCATGAACAGTAACTTCAAAAC 59.961 38.462 0.00 0.00 31.48 2.43
2416 5860 6.039270 CCCTCATGAACAGTAACTTCAAAACA 59.961 38.462 0.00 0.00 31.48 2.83
2417 5861 7.416213 CCCTCATGAACAGTAACTTCAAAACAA 60.416 37.037 0.00 0.00 31.48 2.83
2418 5862 8.137437 CCTCATGAACAGTAACTTCAAAACAAT 58.863 33.333 0.00 0.00 31.48 2.71
2457 5901 6.700845 AAAATCTGAAATTTTGGGGGATCA 57.299 33.333 0.00 0.00 30.84 2.92
2458 5902 6.700845 AAATCTGAAATTTTGGGGGATCAA 57.299 33.333 0.00 0.00 0.00 2.57
2459 5903 6.700845 AATCTGAAATTTTGGGGGATCAAA 57.299 33.333 0.00 0.00 35.15 2.69
2460 5904 6.896452 ATCTGAAATTTTGGGGGATCAAAT 57.104 33.333 0.00 0.00 36.63 2.32
2461 5905 7.993349 ATCTGAAATTTTGGGGGATCAAATA 57.007 32.000 0.00 0.00 36.63 1.40
2462 5906 7.993349 TCTGAAATTTTGGGGGATCAAATAT 57.007 32.000 0.00 0.00 36.63 1.28
2463 5907 7.794041 TCTGAAATTTTGGGGGATCAAATATG 58.206 34.615 0.00 0.00 36.63 1.78
2464 5908 7.622878 TCTGAAATTTTGGGGGATCAAATATGA 59.377 33.333 0.00 0.00 40.57 2.15
2493 5937 7.109006 ACATTTGATGTTCTTGCGAATTTTC 57.891 32.000 0.00 0.00 41.63 2.29
2494 5938 6.700960 ACATTTGATGTTCTTGCGAATTTTCA 59.299 30.769 0.00 0.00 41.63 2.69
2495 5939 6.752335 TTTGATGTTCTTGCGAATTTTCAG 57.248 33.333 0.00 0.00 0.00 3.02
2496 5940 4.229096 TGATGTTCTTGCGAATTTTCAGC 58.771 39.130 0.00 0.00 0.00 4.26
2497 5941 2.649516 TGTTCTTGCGAATTTTCAGCG 58.350 42.857 0.00 0.00 32.24 5.18
2498 5942 2.289274 TGTTCTTGCGAATTTTCAGCGA 59.711 40.909 0.00 0.00 32.24 4.93
2499 5943 2.880822 TCTTGCGAATTTTCAGCGAG 57.119 45.000 13.52 13.52 38.44 5.03
2500 5944 2.412870 TCTTGCGAATTTTCAGCGAGA 58.587 42.857 16.25 16.25 40.95 4.04
2501 5945 2.805671 TCTTGCGAATTTTCAGCGAGAA 59.194 40.909 17.15 0.00 40.63 2.87
2502 5946 3.249799 TCTTGCGAATTTTCAGCGAGAAA 59.750 39.130 17.15 3.66 44.21 2.52
2503 5947 3.829886 TGCGAATTTTCAGCGAGAAAT 57.170 38.095 7.96 0.00 45.15 2.17
2504 5948 4.937696 TGCGAATTTTCAGCGAGAAATA 57.062 36.364 7.96 1.76 45.15 1.40
2505 5949 5.289917 TGCGAATTTTCAGCGAGAAATAA 57.710 34.783 7.96 0.00 45.15 1.40
2506 5950 5.086058 TGCGAATTTTCAGCGAGAAATAAC 58.914 37.500 7.96 3.24 45.15 1.89
2507 5951 5.086058 GCGAATTTTCAGCGAGAAATAACA 58.914 37.500 7.96 0.00 45.15 2.41
2508 5952 5.002561 GCGAATTTTCAGCGAGAAATAACAC 59.997 40.000 7.96 0.00 45.15 3.32
2509 5953 6.307155 CGAATTTTCAGCGAGAAATAACACT 58.693 36.000 7.96 0.00 45.15 3.55
2510 5954 6.462949 CGAATTTTCAGCGAGAAATAACACTC 59.537 38.462 7.96 0.00 45.15 3.51
2518 5962 3.449632 GAGAAATAACACTCGAGGAGCC 58.550 50.000 18.41 0.00 32.04 4.70
2519 5963 2.168728 AGAAATAACACTCGAGGAGCCC 59.831 50.000 18.41 0.00 32.04 5.19
2520 5964 1.568504 AATAACACTCGAGGAGCCCA 58.431 50.000 18.41 0.00 32.04 5.36
2521 5965 0.824759 ATAACACTCGAGGAGCCCAC 59.175 55.000 18.41 0.00 32.04 4.61
2522 5966 0.541063 TAACACTCGAGGAGCCCACA 60.541 55.000 18.41 0.00 32.04 4.17
2523 5967 2.100879 AACACTCGAGGAGCCCACAC 62.101 60.000 18.41 0.00 32.04 3.82
2524 5968 2.997897 ACTCGAGGAGCCCACACC 60.998 66.667 18.41 0.00 32.04 4.16
2525 5969 4.135153 CTCGAGGAGCCCACACCG 62.135 72.222 3.91 0.00 0.00 4.94
2526 5970 4.671590 TCGAGGAGCCCACACCGA 62.672 66.667 0.00 0.00 0.00 4.69
2527 5971 3.691342 CGAGGAGCCCACACCGAA 61.691 66.667 0.00 0.00 0.00 4.30
2528 5972 2.747686 GAGGAGCCCACACCGAAA 59.252 61.111 0.00 0.00 0.00 3.46
2529 5973 1.072505 GAGGAGCCCACACCGAAAA 59.927 57.895 0.00 0.00 0.00 2.29
2530 5974 0.536460 GAGGAGCCCACACCGAAAAA 60.536 55.000 0.00 0.00 0.00 1.94
2555 5999 9.646427 AAAACAAAATTACTGCTCAAAAGTACA 57.354 25.926 0.00 0.00 29.93 2.90
2556 6000 8.628882 AACAAAATTACTGCTCAAAAGTACAC 57.371 30.769 0.00 0.00 29.93 2.90
2557 6001 7.767261 ACAAAATTACTGCTCAAAAGTACACA 58.233 30.769 0.00 0.00 29.93 3.72
2558 6002 8.413229 ACAAAATTACTGCTCAAAAGTACACAT 58.587 29.630 0.00 0.00 29.93 3.21
2559 6003 9.891828 CAAAATTACTGCTCAAAAGTACACATA 57.108 29.630 0.00 0.00 29.93 2.29
2561 6005 9.893305 AAATTACTGCTCAAAAGTACACATAAC 57.107 29.630 0.00 0.00 29.93 1.89
2562 6006 8.848474 ATTACTGCTCAAAAGTACACATAACT 57.152 30.769 0.00 0.00 29.93 2.24
2563 6007 8.671384 TTACTGCTCAAAAGTACACATAACTT 57.329 30.769 0.00 0.00 38.82 2.66
2564 6008 7.568199 ACTGCTCAAAAGTACACATAACTTT 57.432 32.000 0.00 0.00 46.45 2.66
2565 6009 7.417612 ACTGCTCAAAAGTACACATAACTTTG 58.582 34.615 2.26 0.00 44.35 2.77
2566 6010 7.282224 ACTGCTCAAAAGTACACATAACTTTGA 59.718 33.333 2.26 0.00 44.35 2.69
2567 6011 7.990917 TGCTCAAAAGTACACATAACTTTGAA 58.009 30.769 2.26 0.00 44.35 2.69
2568 6012 7.913297 TGCTCAAAAGTACACATAACTTTGAAC 59.087 33.333 2.26 0.00 44.35 3.18
2569 6013 7.913297 GCTCAAAAGTACACATAACTTTGAACA 59.087 33.333 2.26 0.00 44.35 3.18
2570 6014 9.221775 CTCAAAAGTACACATAACTTTGAACAC 57.778 33.333 2.26 0.00 44.35 3.32
2571 6015 8.952278 TCAAAAGTACACATAACTTTGAACACT 58.048 29.630 2.26 0.00 44.35 3.55
2600 6044 3.913855 TTTTTGTGAGGGCTCCACA 57.086 47.368 4.02 4.02 42.16 4.17
2604 6048 3.344703 TGTGAGGGCTCCACAAATG 57.655 52.632 5.53 0.00 41.07 2.32
2605 6049 0.478072 TGTGAGGGCTCCACAAATGT 59.522 50.000 5.53 0.00 41.07 2.71
2606 6050 1.133513 TGTGAGGGCTCCACAAATGTT 60.134 47.619 5.53 0.00 41.07 2.71
2607 6051 1.963515 GTGAGGGCTCCACAAATGTTT 59.036 47.619 0.82 0.00 34.81 2.83
2608 6052 2.365293 GTGAGGGCTCCACAAATGTTTT 59.635 45.455 0.82 0.00 34.81 2.43
2609 6053 3.037549 TGAGGGCTCCACAAATGTTTTT 58.962 40.909 0.00 0.00 0.00 1.94
2630 6074 7.783090 TTTTTGATGCTAAAACTTTGCATGA 57.217 28.000 11.99 2.54 45.90 3.07
2631 6075 7.783090 TTTTGATGCTAAAACTTTGCATGAA 57.217 28.000 11.99 7.99 45.90 2.57
2632 6076 6.768029 TTGATGCTAAAACTTTGCATGAAC 57.232 33.333 11.99 1.07 45.90 3.18
2633 6077 4.916831 TGATGCTAAAACTTTGCATGAACG 59.083 37.500 11.99 0.00 45.90 3.95
2634 6078 4.300189 TGCTAAAACTTTGCATGAACGT 57.700 36.364 0.00 0.00 0.00 3.99
2635 6079 4.677584 TGCTAAAACTTTGCATGAACGTT 58.322 34.783 0.00 0.00 0.00 3.99
2636 6080 5.822278 TGCTAAAACTTTGCATGAACGTTA 58.178 33.333 0.00 0.00 0.00 3.18
2637 6081 6.266323 TGCTAAAACTTTGCATGAACGTTAA 58.734 32.000 0.00 0.00 0.00 2.01
2638 6082 6.752351 TGCTAAAACTTTGCATGAACGTTAAA 59.248 30.769 0.00 0.00 0.00 1.52
2639 6083 7.436673 TGCTAAAACTTTGCATGAACGTTAAAT 59.563 29.630 0.00 0.00 0.00 1.40
2640 6084 7.735586 GCTAAAACTTTGCATGAACGTTAAATG 59.264 33.333 15.71 15.71 0.00 2.32
2641 6085 7.532682 AAAACTTTGCATGAACGTTAAATGT 57.467 28.000 19.24 8.27 0.00 2.71
2642 6086 6.747659 AACTTTGCATGAACGTTAAATGTC 57.252 33.333 19.24 13.87 0.00 3.06
2643 6087 6.072112 ACTTTGCATGAACGTTAAATGTCT 57.928 33.333 19.24 0.00 0.00 3.41
2644 6088 5.914635 ACTTTGCATGAACGTTAAATGTCTG 59.085 36.000 19.24 12.20 0.00 3.51
2645 6089 5.681337 TTGCATGAACGTTAAATGTCTGA 57.319 34.783 19.24 6.01 0.00 3.27
2646 6090 5.878332 TGCATGAACGTTAAATGTCTGAT 57.122 34.783 19.24 0.00 0.00 2.90
2647 6091 5.868257 TGCATGAACGTTAAATGTCTGATC 58.132 37.500 19.24 7.16 0.00 2.92
2648 6092 5.411053 TGCATGAACGTTAAATGTCTGATCA 59.589 36.000 19.24 0.00 0.00 2.92
2649 6093 5.961843 GCATGAACGTTAAATGTCTGATCAG 59.038 40.000 17.07 17.07 0.00 2.90
2650 6094 6.183360 GCATGAACGTTAAATGTCTGATCAGA 60.183 38.462 21.67 21.67 34.56 3.27
2662 6106 3.986435 TCTGATCAGACTTCATCCCTCA 58.014 45.455 21.67 0.00 31.41 3.86
2663 6107 4.356436 TCTGATCAGACTTCATCCCTCAA 58.644 43.478 21.67 0.00 31.41 3.02
2664 6108 4.779489 TCTGATCAGACTTCATCCCTCAAA 59.221 41.667 21.67 0.00 31.41 2.69
2665 6109 5.095145 TGATCAGACTTCATCCCTCAAAG 57.905 43.478 0.00 0.00 0.00 2.77
2666 6110 4.533707 TGATCAGACTTCATCCCTCAAAGT 59.466 41.667 0.00 0.00 36.00 2.66
2667 6111 4.982241 TCAGACTTCATCCCTCAAAGTT 57.018 40.909 0.00 0.00 33.54 2.66
2668 6112 5.310409 TCAGACTTCATCCCTCAAAGTTT 57.690 39.130 0.00 0.00 33.54 2.66
2669 6113 5.308825 TCAGACTTCATCCCTCAAAGTTTC 58.691 41.667 0.00 0.00 33.54 2.78
2670 6114 5.065914 CAGACTTCATCCCTCAAAGTTTCA 58.934 41.667 0.00 0.00 33.54 2.69
2671 6115 5.180868 CAGACTTCATCCCTCAAAGTTTCAG 59.819 44.000 0.00 0.00 33.54 3.02
2672 6116 5.072329 AGACTTCATCCCTCAAAGTTTCAGA 59.928 40.000 0.00 0.00 33.54 3.27
2673 6117 5.885465 ACTTCATCCCTCAAAGTTTCAGAT 58.115 37.500 0.00 0.00 29.09 2.90
2674 6118 6.310149 ACTTCATCCCTCAAAGTTTCAGATT 58.690 36.000 0.00 0.00 29.09 2.40
2675 6119 6.779539 ACTTCATCCCTCAAAGTTTCAGATTT 59.220 34.615 0.00 0.00 29.09 2.17
2676 6120 7.288621 ACTTCATCCCTCAAAGTTTCAGATTTT 59.711 33.333 0.00 0.00 29.09 1.82
2677 6121 7.601705 TCATCCCTCAAAGTTTCAGATTTTT 57.398 32.000 0.00 0.00 0.00 1.94
2720 6164 9.840427 ATCGTTTTAAATTTACTGTTCATGAGG 57.160 29.630 0.00 0.00 0.00 3.86
2721 6165 8.293867 TCGTTTTAAATTTACTGTTCATGAGGG 58.706 33.333 0.00 0.00 0.00 4.30
2722 6166 8.079809 CGTTTTAAATTTACTGTTCATGAGGGT 58.920 33.333 0.00 0.00 0.00 4.34
2723 6167 9.191995 GTTTTAAATTTACTGTTCATGAGGGTG 57.808 33.333 0.00 0.00 0.00 4.61
2724 6168 5.391312 AAATTTACTGTTCATGAGGGTGC 57.609 39.130 0.00 0.00 0.00 5.01
2725 6169 2.489938 TTACTGTTCATGAGGGTGCC 57.510 50.000 0.00 0.00 0.00 5.01
2726 6170 0.618458 TACTGTTCATGAGGGTGCCC 59.382 55.000 0.00 0.00 0.00 5.36
2727 6171 1.379044 CTGTTCATGAGGGTGCCCC 60.379 63.158 3.17 2.16 45.90 5.80
2744 6188 4.020617 CTGCACCCGGGAGCTGAA 62.021 66.667 37.52 20.81 33.96 3.02
2745 6189 3.551496 CTGCACCCGGGAGCTGAAA 62.551 63.158 37.52 20.46 33.96 2.69
2746 6190 2.747855 GCACCCGGGAGCTGAAAG 60.748 66.667 32.83 10.45 0.00 2.62
2747 6191 2.750350 CACCCGGGAGCTGAAAGT 59.250 61.111 32.02 0.00 35.30 2.66
2748 6192 1.376037 CACCCGGGAGCTGAAAGTC 60.376 63.158 32.02 0.00 35.30 3.01
2749 6193 1.536662 ACCCGGGAGCTGAAAGTCT 60.537 57.895 32.02 0.00 35.30 3.24
2750 6194 0.252103 ACCCGGGAGCTGAAAGTCTA 60.252 55.000 32.02 0.00 35.30 2.59
2751 6195 0.461961 CCCGGGAGCTGAAAGTCTAG 59.538 60.000 18.48 0.00 35.30 2.43
2752 6196 1.187087 CCGGGAGCTGAAAGTCTAGT 58.813 55.000 0.00 0.00 35.30 2.57
2753 6197 1.135333 CCGGGAGCTGAAAGTCTAGTC 59.865 57.143 0.00 0.00 35.30 2.59
2754 6198 2.096248 CGGGAGCTGAAAGTCTAGTCT 58.904 52.381 0.00 0.00 35.30 3.24
2755 6199 2.098443 CGGGAGCTGAAAGTCTAGTCTC 59.902 54.545 0.00 0.00 35.30 3.36
2756 6200 3.093057 GGGAGCTGAAAGTCTAGTCTCA 58.907 50.000 0.00 0.00 35.30 3.27
2757 6201 3.704061 GGGAGCTGAAAGTCTAGTCTCAT 59.296 47.826 0.00 0.00 35.30 2.90
2758 6202 4.161377 GGGAGCTGAAAGTCTAGTCTCATT 59.839 45.833 0.00 0.00 35.30 2.57
2759 6203 5.337975 GGGAGCTGAAAGTCTAGTCTCATTT 60.338 44.000 0.00 0.00 35.30 2.32
2760 6204 6.127310 GGGAGCTGAAAGTCTAGTCTCATTTA 60.127 42.308 0.00 0.00 35.30 1.40
2761 6205 6.978080 GGAGCTGAAAGTCTAGTCTCATTTAG 59.022 42.308 0.00 0.00 35.30 1.85
2762 6206 6.872920 AGCTGAAAGTCTAGTCTCATTTAGG 58.127 40.000 0.00 0.00 35.30 2.69
2763 6207 6.665680 AGCTGAAAGTCTAGTCTCATTTAGGA 59.334 38.462 0.00 0.00 35.30 2.94
2764 6208 7.344352 AGCTGAAAGTCTAGTCTCATTTAGGAT 59.656 37.037 0.00 0.00 35.30 3.24
2790 6234 5.499004 AGTGGTGTTGGTATTACAGACAT 57.501 39.130 5.24 0.00 0.00 3.06
2872 6316 5.350640 ACACGCTATTCCTAACAAAGTTAGC 59.649 40.000 10.61 1.69 0.00 3.09
2889 6333 2.390427 GCAGTAGCGCGGGTTTAAT 58.610 52.632 8.83 0.00 0.00 1.40
2891 6335 1.935933 CAGTAGCGCGGGTTTAATCT 58.064 50.000 8.83 0.00 0.00 2.40
2931 6375 3.532892 GCTGTAGCGCGATACTAGTAA 57.467 47.619 31.61 13.05 0.00 2.24
2953 6397 2.585247 GGTACCCGCGCTGCTAAG 60.585 66.667 5.56 0.00 0.00 2.18
2967 6411 3.531538 CTGCTAAGAGCGATTTTACCCA 58.468 45.455 0.00 0.00 46.26 4.51
2988 6432 2.289444 ACGCTGCTAGTAGCCTTTTTCA 60.289 45.455 24.74 0.00 41.51 2.69
2992 6436 5.360591 GCTGCTAGTAGCCTTTTTCATAGA 58.639 41.667 21.02 0.00 41.51 1.98
2995 6439 5.817816 TGCTAGTAGCCTTTTTCATAGAAGC 59.182 40.000 19.41 0.00 41.51 3.86
2996 6440 5.237561 GCTAGTAGCCTTTTTCATAGAAGCC 59.762 44.000 11.33 0.00 34.48 4.35
2997 6441 5.443230 AGTAGCCTTTTTCATAGAAGCCT 57.557 39.130 0.00 0.00 0.00 4.58
2998 6442 5.821097 AGTAGCCTTTTTCATAGAAGCCTT 58.179 37.500 0.00 0.00 0.00 4.35
2999 6443 6.249192 AGTAGCCTTTTTCATAGAAGCCTTT 58.751 36.000 0.00 0.00 0.00 3.11
3000 6444 6.721668 AGTAGCCTTTTTCATAGAAGCCTTTT 59.278 34.615 0.00 0.00 0.00 2.27
3001 6445 6.425210 AGCCTTTTTCATAGAAGCCTTTTT 57.575 33.333 0.00 0.00 0.00 1.94
3002 6446 6.459066 AGCCTTTTTCATAGAAGCCTTTTTC 58.541 36.000 0.00 0.00 0.00 2.29
3003 6447 5.639506 GCCTTTTTCATAGAAGCCTTTTTCC 59.360 40.000 0.00 0.00 0.00 3.13
3004 6448 6.519043 GCCTTTTTCATAGAAGCCTTTTTCCT 60.519 38.462 0.00 0.00 0.00 3.36
3005 6449 7.309805 GCCTTTTTCATAGAAGCCTTTTTCCTA 60.310 37.037 0.00 0.00 0.00 2.94
3006 6450 8.246871 CCTTTTTCATAGAAGCCTTTTTCCTAG 58.753 37.037 0.00 0.00 0.00 3.02
3007 6451 8.934023 TTTTTCATAGAAGCCTTTTTCCTAGA 57.066 30.769 0.00 0.00 0.00 2.43
3008 6452 8.934023 TTTTCATAGAAGCCTTTTTCCTAGAA 57.066 30.769 0.00 0.00 0.00 2.10
3009 6453 8.567285 TTTCATAGAAGCCTTTTTCCTAGAAG 57.433 34.615 0.00 0.00 0.00 2.85
3010 6454 6.116126 TCATAGAAGCCTTTTTCCTAGAAGC 58.884 40.000 0.00 0.00 0.00 3.86
3011 6455 3.339141 AGAAGCCTTTTTCCTAGAAGCG 58.661 45.455 0.00 0.00 0.00 4.68
3012 6456 2.861147 AGCCTTTTTCCTAGAAGCGT 57.139 45.000 0.00 0.00 0.00 5.07
3013 6457 2.701107 AGCCTTTTTCCTAGAAGCGTC 58.299 47.619 0.00 0.00 0.00 5.19
3014 6458 1.393883 GCCTTTTTCCTAGAAGCGTCG 59.606 52.381 0.00 0.00 0.00 5.12
3015 6459 2.000447 CCTTTTTCCTAGAAGCGTCGG 59.000 52.381 0.00 0.00 0.00 4.79
3016 6460 1.393883 CTTTTTCCTAGAAGCGTCGGC 59.606 52.381 0.00 0.00 40.37 5.54
3017 6461 0.390735 TTTTCCTAGAAGCGTCGGCC 60.391 55.000 0.00 0.00 41.24 6.13
3018 6462 1.255667 TTTCCTAGAAGCGTCGGCCT 61.256 55.000 0.00 0.00 41.24 5.19
3019 6463 1.664321 TTCCTAGAAGCGTCGGCCTC 61.664 60.000 0.00 0.00 41.24 4.70
3020 6464 2.413765 CTAGAAGCGTCGGCCTCC 59.586 66.667 0.00 0.00 41.24 4.30
3021 6465 2.361992 TAGAAGCGTCGGCCTCCA 60.362 61.111 0.00 0.00 41.24 3.86
3022 6466 2.343163 CTAGAAGCGTCGGCCTCCAG 62.343 65.000 0.00 0.00 41.24 3.86
3023 6467 4.821589 GAAGCGTCGGCCTCCAGG 62.822 72.222 0.00 0.00 41.24 4.45
3027 6471 4.452733 CGTCGGCCTCCAGGGTTC 62.453 72.222 0.00 0.00 37.43 3.62
3028 6472 4.452733 GTCGGCCTCCAGGGTTCG 62.453 72.222 0.00 0.00 37.43 3.95
3030 6474 4.760047 CGGCCTCCAGGGTTCGTG 62.760 72.222 0.00 0.00 37.43 4.35
3034 6478 4.680237 CTCCAGGGTTCGTGCGCA 62.680 66.667 5.66 5.66 0.00 6.09
3035 6479 3.958147 CTCCAGGGTTCGTGCGCAT 62.958 63.158 15.91 0.00 0.00 4.73
3036 6480 3.803082 CCAGGGTTCGTGCGCATG 61.803 66.667 23.73 23.73 0.00 4.06
3037 6481 3.803082 CAGGGTTCGTGCGCATGG 61.803 66.667 28.29 16.78 0.00 3.66
3054 6498 4.802051 GGCGCAGGGCAGGATCAA 62.802 66.667 10.83 0.00 46.16 2.57
3055 6499 3.207669 GCGCAGGGCAGGATCAAG 61.208 66.667 0.30 0.00 42.87 3.02
3056 6500 2.515523 CGCAGGGCAGGATCAAGG 60.516 66.667 0.00 0.00 0.00 3.61
3057 6501 2.832201 GCAGGGCAGGATCAAGGC 60.832 66.667 0.00 0.00 0.00 4.35
3058 6502 2.515523 CAGGGCAGGATCAAGGCG 60.516 66.667 0.00 0.00 0.00 5.52
3059 6503 4.496336 AGGGCAGGATCAAGGCGC 62.496 66.667 0.00 0.00 40.37 6.53
3066 6510 4.166011 GATCAAGGCGCGGCACAC 62.166 66.667 34.94 16.33 0.00 3.82
3078 6522 3.414272 GCACACGCCATCTCCATC 58.586 61.111 0.00 0.00 0.00 3.51
3079 6523 2.182842 GCACACGCCATCTCCATCC 61.183 63.158 0.00 0.00 0.00 3.51
3080 6524 1.221566 CACACGCCATCTCCATCCA 59.778 57.895 0.00 0.00 0.00 3.41
3081 6525 0.179037 CACACGCCATCTCCATCCAT 60.179 55.000 0.00 0.00 0.00 3.41
3082 6526 0.179037 ACACGCCATCTCCATCCATG 60.179 55.000 0.00 0.00 0.00 3.66
3083 6527 1.228063 ACGCCATCTCCATCCATGC 60.228 57.895 0.00 0.00 0.00 4.06
3084 6528 1.228033 CGCCATCTCCATCCATGCA 60.228 57.895 0.00 0.00 0.00 3.96
3085 6529 0.608308 CGCCATCTCCATCCATGCAT 60.608 55.000 0.00 0.00 0.00 3.96
3086 6530 1.174783 GCCATCTCCATCCATGCATC 58.825 55.000 0.00 0.00 0.00 3.91
3087 6531 1.835494 CCATCTCCATCCATGCATCC 58.165 55.000 0.00 0.00 0.00 3.51
3088 6532 1.450025 CATCTCCATCCATGCATCCG 58.550 55.000 0.00 0.00 0.00 4.18
3089 6533 0.327259 ATCTCCATCCATGCATCCGG 59.673 55.000 0.00 0.00 0.00 5.14
3090 6534 1.970114 CTCCATCCATGCATCCGGC 60.970 63.158 0.00 0.00 45.13 6.13
3091 6535 2.114625 CCATCCATGCATCCGGCT 59.885 61.111 0.00 0.00 45.15 5.52
3092 6536 1.529948 CCATCCATGCATCCGGCTT 60.530 57.895 0.00 0.00 45.15 4.35
3093 6537 1.521450 CCATCCATGCATCCGGCTTC 61.521 60.000 0.00 0.00 45.15 3.86
3094 6538 1.228367 ATCCATGCATCCGGCTTCC 60.228 57.895 0.00 0.00 45.15 3.46
3096 6540 3.957535 CATGCATCCGGCTTCCGC 61.958 66.667 0.00 0.00 46.86 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 69 9.979578 TGTGCTAAATTGTTCAGACATAATTTT 57.020 25.926 0.00 0.00 35.29 1.82
116 123 2.648059 CTAAGAGCATGGTTTCCCCTG 58.352 52.381 0.00 0.00 0.00 4.45
164 180 5.304614 ACTGCACAGGAAGAACTCTAGTTTA 59.695 40.000 2.21 0.00 38.56 2.01
326 368 3.319972 GGCATCTGAATGTATGGTGCAAT 59.680 43.478 0.00 0.00 35.18 3.56
410 2019 3.452627 CAGTCCCTCTGGCACTAATACTT 59.547 47.826 0.00 0.00 40.23 2.24
416 2025 1.267121 GTTCAGTCCCTCTGGCACTA 58.733 55.000 0.00 0.00 43.76 2.74
436 2045 5.347342 TCGCACAACAATGATTTCAAGTTT 58.653 33.333 0.00 0.00 0.00 2.66
562 2172 6.926630 ATTAGCCCATAAACCTTGTTTGAA 57.073 33.333 2.60 0.00 0.00 2.69
595 2206 7.179966 TCCTCTACTACATTTGGAGACAGTTA 58.820 38.462 0.00 0.00 44.54 2.24
683 3503 2.988010 TGTGAAACTCTGACAGCAGT 57.012 45.000 0.00 0.00 37.91 4.40
690 4042 4.101585 ACAACCTGAGATGTGAAACTCTGA 59.898 41.667 0.00 0.00 38.04 3.27
832 4184 1.283321 GGAGAAACCATCTGGCCTCTT 59.717 52.381 3.32 0.00 38.96 2.85
857 4209 3.487202 CCACCGTGATGTTCCGCG 61.487 66.667 0.00 0.00 39.50 6.46
873 4225 6.223120 ACACTGAAATTTACAAGGAAATGCC 58.777 36.000 0.00 0.00 0.00 4.40
929 4281 5.422970 ACTCGGTACCACCATCACTAAATTA 59.577 40.000 13.54 0.00 38.47 1.40
955 4307 3.751518 TGTGTCTGTACTCTGTGCTCTA 58.248 45.455 0.00 0.00 0.00 2.43
960 4312 2.733552 GCACATGTGTCTGTACTCTGTG 59.266 50.000 26.01 0.00 34.71 3.66
988 4340 1.133699 CCCAGCCATTGATTCTGCCTA 60.134 52.381 0.00 0.00 0.00 3.93
1074 4458 3.901844 ACCAATACGGGCTACATCACTAT 59.098 43.478 0.00 0.00 40.22 2.12
1075 4459 3.302161 ACCAATACGGGCTACATCACTA 58.698 45.455 0.00 0.00 40.22 2.74
1111 4495 5.008712 TGAGATCGTTAGGTACTAGCACATG 59.991 44.000 0.00 0.00 44.25 3.21
1112 4496 5.131067 TGAGATCGTTAGGTACTAGCACAT 58.869 41.667 0.00 0.00 44.25 3.21
1141 4572 3.883489 AGAAACCCAAAACTACTGTGCTC 59.117 43.478 0.00 0.00 0.00 4.26
1165 4596 3.803340 ACTCTGAATCCCCTTGGAACTA 58.197 45.455 0.00 0.00 45.98 2.24
1196 4627 9.289782 GCATGGTTAGATAAGATCCAAATACTT 57.710 33.333 0.00 0.00 0.00 2.24
1264 4695 7.201938 CCAAACATTATTCTGATTACCCAGCAT 60.202 37.037 0.00 0.00 34.28 3.79
1301 4732 4.464951 ACTGTAAATAGTGTCCGACATCCA 59.535 41.667 4.13 0.00 0.00 3.41
1372 4803 7.734865 ACAGATATACAATTGGGGATCACTAGA 59.265 37.037 10.83 0.00 0.00 2.43
1405 4837 0.103572 ATGGCTCGGCATTTGCATTC 59.896 50.000 4.74 0.00 44.36 2.67
1463 4895 2.040178 AGGAGCATACTAACCCCTTCG 58.960 52.381 0.00 0.00 0.00 3.79
1529 4961 5.409520 TCTTCAGACGAATGACATGGAAAAG 59.590 40.000 0.00 0.00 0.00 2.27
1536 4968 5.970592 TCAGATTCTTCAGACGAATGACAT 58.029 37.500 6.87 0.00 31.62 3.06
1545 4977 7.645735 GGTTCAAAAACTTCAGATTCTTCAGAC 59.354 37.037 0.00 0.00 35.61 3.51
1565 4997 4.739137 GCAGCATTACCAACAAAGGTTCAA 60.739 41.667 0.00 0.00 43.08 2.69
1731 5163 2.648613 ATCATCTCTCGGGCTCGGGT 62.649 60.000 5.37 0.00 38.21 5.28
1761 5193 6.211785 TGGCCACATACCGAATCAAGTATATA 59.788 38.462 0.00 0.00 0.00 0.86
1765 5197 2.502130 TGGCCACATACCGAATCAAGTA 59.498 45.455 0.00 0.00 0.00 2.24
1832 5266 3.326006 GGAGGAAGCCATCATAGATGTGA 59.674 47.826 6.29 0.00 0.00 3.58
1881 5319 3.151710 CAGGCCCCGGTCGATGTA 61.152 66.667 0.00 0.00 0.00 2.29
1948 5386 4.408821 GACCGATGGCAGCCACCA 62.409 66.667 19.10 0.00 45.82 4.17
1983 5421 2.972505 CGAAACACAGCGGGCAGT 60.973 61.111 0.00 0.00 0.00 4.40
2014 5452 1.552799 TTCCCAGCCTGATCTCGCAA 61.553 55.000 0.00 0.00 0.00 4.85
2048 5486 1.196808 TCCAAAAATTCGCTCACTCGC 59.803 47.619 0.00 0.00 0.00 5.03
2058 5496 6.202516 TGTTATGGTCCGATCCAAAAATTC 57.797 37.500 2.93 0.00 41.09 2.17
2112 5550 6.238593 GCCATGCAAATTCAAAACTTTACCAA 60.239 34.615 0.00 0.00 0.00 3.67
2244 5682 8.803201 ATCACACAATTGTCGTATCTACTATG 57.197 34.615 8.48 0.00 31.66 2.23
2357 5801 0.606673 GGAGCTGTCACACCTTTCCC 60.607 60.000 0.00 0.00 0.00 3.97
2358 5802 0.606673 GGGAGCTGTCACACCTTTCC 60.607 60.000 0.00 0.00 0.00 3.13
2359 5803 0.951040 CGGGAGCTGTCACACCTTTC 60.951 60.000 0.00 0.00 0.00 2.62
2360 5804 1.071471 CGGGAGCTGTCACACCTTT 59.929 57.895 0.00 0.00 0.00 3.11
2361 5805 2.743718 CGGGAGCTGTCACACCTT 59.256 61.111 0.00 0.00 0.00 3.50
2362 5806 3.314331 CCGGGAGCTGTCACACCT 61.314 66.667 0.00 0.00 0.00 4.00
2363 5807 4.394712 CCCGGGAGCTGTCACACC 62.395 72.222 18.48 0.00 0.00 4.16
2364 5808 3.626924 ACCCGGGAGCTGTCACAC 61.627 66.667 32.02 0.00 0.00 3.82
2365 5809 3.625897 CACCCGGGAGCTGTCACA 61.626 66.667 32.02 0.00 0.00 3.58
2368 5812 4.767255 CTGCACCCGGGAGCTGTC 62.767 72.222 37.52 17.77 33.00 3.51
2385 5829 0.693049 ACTGTTCATGAGGGTGTCCC 59.307 55.000 0.00 0.00 45.90 4.46
2386 5830 3.008049 AGTTACTGTTCATGAGGGTGTCC 59.992 47.826 0.00 0.00 0.00 4.02
2387 5831 4.273148 AGTTACTGTTCATGAGGGTGTC 57.727 45.455 0.00 0.00 0.00 3.67
2388 5832 4.102524 TGAAGTTACTGTTCATGAGGGTGT 59.897 41.667 0.00 0.00 0.00 4.16
2389 5833 4.641396 TGAAGTTACTGTTCATGAGGGTG 58.359 43.478 0.00 0.00 0.00 4.61
2390 5834 4.974645 TGAAGTTACTGTTCATGAGGGT 57.025 40.909 0.00 0.00 0.00 4.34
2391 5835 6.039270 TGTTTTGAAGTTACTGTTCATGAGGG 59.961 38.462 0.00 0.00 33.95 4.30
2392 5836 7.026631 TGTTTTGAAGTTACTGTTCATGAGG 57.973 36.000 0.00 0.00 33.95 3.86
2433 5877 7.089106 TGATCCCCCAAAATTTCAGATTTTT 57.911 32.000 0.00 0.00 0.00 1.94
2434 5878 6.700845 TGATCCCCCAAAATTTCAGATTTT 57.299 33.333 0.00 0.00 0.00 1.82
2435 5879 6.700845 TTGATCCCCCAAAATTTCAGATTT 57.299 33.333 0.00 0.00 0.00 2.17
2436 5880 6.700845 TTTGATCCCCCAAAATTTCAGATT 57.299 33.333 0.00 0.00 33.56 2.40
2437 5881 6.896452 ATTTGATCCCCCAAAATTTCAGAT 57.104 33.333 0.00 0.00 39.20 2.90
2438 5882 7.622878 TCATATTTGATCCCCCAAAATTTCAGA 59.377 33.333 0.00 0.00 39.20 3.27
2439 5883 7.794041 TCATATTTGATCCCCCAAAATTTCAG 58.206 34.615 0.00 0.00 39.20 3.02
2440 5884 7.746243 TCATATTTGATCCCCCAAAATTTCA 57.254 32.000 0.00 0.00 39.20 2.69
2480 5924 3.249799 TTTCTCGCTGAAAATTCGCAAGA 59.750 39.130 9.43 4.54 42.76 3.02
2481 5925 2.880822 TCTCGCTGAAAATTCGCAAG 57.119 45.000 9.43 2.74 0.00 4.01
2482 5926 3.617540 TTTCTCGCTGAAAATTCGCAA 57.382 38.095 9.43 0.00 41.23 4.85
2483 5927 3.829886 ATTTCTCGCTGAAAATTCGCA 57.170 38.095 7.33 0.00 46.32 5.10
2484 5928 5.002561 GTGTTATTTCTCGCTGAAAATTCGC 59.997 40.000 7.33 1.62 46.32 4.70
2485 5929 6.307155 AGTGTTATTTCTCGCTGAAAATTCG 58.693 36.000 7.33 0.00 46.32 3.34
2486 5930 6.462949 CGAGTGTTATTTCTCGCTGAAAATTC 59.537 38.462 7.33 0.00 46.32 2.17
2487 5931 6.307155 CGAGTGTTATTTCTCGCTGAAAATT 58.693 36.000 7.33 0.00 46.32 1.82
2488 5932 5.858475 CGAGTGTTATTTCTCGCTGAAAAT 58.142 37.500 7.33 0.45 46.32 1.82
2489 5933 5.264060 CGAGTGTTATTTCTCGCTGAAAA 57.736 39.130 7.33 0.00 46.32 2.29
2497 5941 3.449632 GGCTCCTCGAGTGTTATTTCTC 58.550 50.000 12.31 0.00 31.39 2.87
2498 5942 2.168728 GGGCTCCTCGAGTGTTATTTCT 59.831 50.000 12.31 0.00 31.39 2.52
2499 5943 2.093658 TGGGCTCCTCGAGTGTTATTTC 60.094 50.000 12.31 0.00 31.39 2.17
2500 5944 1.906574 TGGGCTCCTCGAGTGTTATTT 59.093 47.619 12.31 0.00 31.39 1.40
2501 5945 1.207329 GTGGGCTCCTCGAGTGTTATT 59.793 52.381 12.31 0.00 31.39 1.40
2502 5946 0.824759 GTGGGCTCCTCGAGTGTTAT 59.175 55.000 12.31 0.00 31.39 1.89
2503 5947 0.541063 TGTGGGCTCCTCGAGTGTTA 60.541 55.000 12.31 0.00 31.39 2.41
2504 5948 1.837051 TGTGGGCTCCTCGAGTGTT 60.837 57.895 12.31 0.00 31.39 3.32
2505 5949 2.203640 TGTGGGCTCCTCGAGTGT 60.204 61.111 12.31 0.00 31.39 3.55
2506 5950 2.262915 GTGTGGGCTCCTCGAGTG 59.737 66.667 12.31 4.99 31.39 3.51
2507 5951 2.997897 GGTGTGGGCTCCTCGAGT 60.998 66.667 12.31 0.00 31.39 4.18
2508 5952 4.135153 CGGTGTGGGCTCCTCGAG 62.135 72.222 5.13 5.13 0.00 4.04
2509 5953 4.671590 TCGGTGTGGGCTCCTCGA 62.672 66.667 0.00 0.00 0.00 4.04
2510 5954 2.725203 TTTTCGGTGTGGGCTCCTCG 62.725 60.000 0.00 0.00 0.00 4.63
2511 5955 0.536460 TTTTTCGGTGTGGGCTCCTC 60.536 55.000 0.00 0.00 0.00 3.71
2512 5956 1.534697 TTTTTCGGTGTGGGCTCCT 59.465 52.632 0.00 0.00 0.00 3.69
2513 5957 4.167597 TTTTTCGGTGTGGGCTCC 57.832 55.556 0.00 0.00 0.00 4.70
2529 5973 9.646427 TGTACTTTTGAGCAGTAATTTTGTTTT 57.354 25.926 0.00 0.00 0.00 2.43
2530 5974 9.083080 GTGTACTTTTGAGCAGTAATTTTGTTT 57.917 29.630 0.00 0.00 0.00 2.83
2531 5975 8.247562 TGTGTACTTTTGAGCAGTAATTTTGTT 58.752 29.630 0.00 0.00 0.00 2.83
2532 5976 7.767261 TGTGTACTTTTGAGCAGTAATTTTGT 58.233 30.769 0.00 0.00 0.00 2.83
2533 5977 8.801715 ATGTGTACTTTTGAGCAGTAATTTTG 57.198 30.769 0.00 0.00 0.00 2.44
2535 5979 9.893305 GTTATGTGTACTTTTGAGCAGTAATTT 57.107 29.630 0.00 0.00 0.00 1.82
2536 5980 9.284968 AGTTATGTGTACTTTTGAGCAGTAATT 57.715 29.630 0.00 0.00 0.00 1.40
2537 5981 8.848474 AGTTATGTGTACTTTTGAGCAGTAAT 57.152 30.769 0.00 0.00 0.00 1.89
2538 5982 8.671384 AAGTTATGTGTACTTTTGAGCAGTAA 57.329 30.769 0.00 0.00 32.06 2.24
2539 5983 8.556194 CAAAGTTATGTGTACTTTTGAGCAGTA 58.444 33.333 0.00 0.00 42.32 2.74
2540 5984 7.282224 TCAAAGTTATGTGTACTTTTGAGCAGT 59.718 33.333 0.00 0.00 42.32 4.40
2541 5985 7.639039 TCAAAGTTATGTGTACTTTTGAGCAG 58.361 34.615 0.00 0.00 42.32 4.24
2542 5986 7.561021 TCAAAGTTATGTGTACTTTTGAGCA 57.439 32.000 0.00 0.00 42.32 4.26
2543 5987 7.913297 TGTTCAAAGTTATGTGTACTTTTGAGC 59.087 33.333 0.00 5.15 42.32 4.26
2544 5988 9.221775 GTGTTCAAAGTTATGTGTACTTTTGAG 57.778 33.333 0.00 0.00 42.32 3.02
2545 5989 8.952278 AGTGTTCAAAGTTATGTGTACTTTTGA 58.048 29.630 0.00 0.00 42.32 2.69
2582 6026 3.913855 TGTGGAGCCCTCACAAAAA 57.086 47.368 2.46 0.00 41.50 1.94
2586 6030 0.478072 ACATTTGTGGAGCCCTCACA 59.522 50.000 0.98 0.98 42.57 3.58
2587 6031 1.620822 AACATTTGTGGAGCCCTCAC 58.379 50.000 0.00 0.00 35.82 3.51
2588 6032 2.380064 AAACATTTGTGGAGCCCTCA 57.620 45.000 0.00 0.00 0.00 3.86
2589 6033 3.751479 AAAAACATTTGTGGAGCCCTC 57.249 42.857 0.00 0.00 0.00 4.30
2606 6050 7.783090 TCATGCAAAGTTTTAGCATCAAAAA 57.217 28.000 9.76 0.00 46.39 1.94
2607 6051 7.516470 CGTTCATGCAAAGTTTTAGCATCAAAA 60.516 33.333 9.76 4.12 46.39 2.44
2608 6052 6.074409 CGTTCATGCAAAGTTTTAGCATCAAA 60.074 34.615 9.76 6.03 46.39 2.69
2609 6053 5.401972 CGTTCATGCAAAGTTTTAGCATCAA 59.598 36.000 9.76 2.49 46.39 2.57
2610 6054 4.916831 CGTTCATGCAAAGTTTTAGCATCA 59.083 37.500 9.76 0.00 46.39 3.07
2611 6055 4.917415 ACGTTCATGCAAAGTTTTAGCATC 59.083 37.500 9.76 0.96 46.39 3.91
2613 6057 4.300189 ACGTTCATGCAAAGTTTTAGCA 57.700 36.364 3.37 3.37 43.14 3.49
2614 6058 6.741448 TTAACGTTCATGCAAAGTTTTAGC 57.259 33.333 2.82 0.00 37.75 3.09
2615 6059 8.751335 ACATTTAACGTTCATGCAAAGTTTTAG 58.249 29.630 16.59 5.99 37.75 1.85
2616 6060 8.635877 ACATTTAACGTTCATGCAAAGTTTTA 57.364 26.923 16.59 4.83 37.75 1.52
2617 6061 7.491048 AGACATTTAACGTTCATGCAAAGTTTT 59.509 29.630 16.59 0.00 37.75 2.43
2618 6062 6.978080 AGACATTTAACGTTCATGCAAAGTTT 59.022 30.769 16.59 0.53 37.75 2.66
2619 6063 6.417635 CAGACATTTAACGTTCATGCAAAGTT 59.582 34.615 16.59 11.51 39.64 2.66
2620 6064 5.914635 CAGACATTTAACGTTCATGCAAAGT 59.085 36.000 16.59 7.43 0.00 2.66
2621 6065 6.142139 TCAGACATTTAACGTTCATGCAAAG 58.858 36.000 16.59 7.77 0.00 2.77
2622 6066 6.066054 TCAGACATTTAACGTTCATGCAAA 57.934 33.333 16.59 7.73 0.00 3.68
2623 6067 5.681337 TCAGACATTTAACGTTCATGCAA 57.319 34.783 16.59 0.00 0.00 4.08
2624 6068 5.411053 TGATCAGACATTTAACGTTCATGCA 59.589 36.000 16.59 0.00 0.00 3.96
2625 6069 5.868257 TGATCAGACATTTAACGTTCATGC 58.132 37.500 16.59 11.20 0.00 4.06
2626 6070 7.294676 TCTGATCAGACATTTAACGTTCATG 57.705 36.000 21.67 11.36 31.41 3.07
2641 6085 3.986435 TGAGGGATGAAGTCTGATCAGA 58.014 45.455 21.67 21.67 34.56 3.27
2642 6086 4.750021 TTGAGGGATGAAGTCTGATCAG 57.250 45.455 17.07 17.07 0.00 2.90
2643 6087 4.533707 ACTTTGAGGGATGAAGTCTGATCA 59.466 41.667 0.00 0.00 0.00 2.92
2644 6088 5.096443 ACTTTGAGGGATGAAGTCTGATC 57.904 43.478 0.00 0.00 0.00 2.92
2645 6089 5.511386 AACTTTGAGGGATGAAGTCTGAT 57.489 39.130 0.00 0.00 32.79 2.90
2646 6090 4.982241 AACTTTGAGGGATGAAGTCTGA 57.018 40.909 0.00 0.00 32.79 3.27
2647 6091 5.065914 TGAAACTTTGAGGGATGAAGTCTG 58.934 41.667 0.00 0.00 32.79 3.51
2648 6092 5.072329 TCTGAAACTTTGAGGGATGAAGTCT 59.928 40.000 0.00 0.00 32.79 3.24
2649 6093 5.308825 TCTGAAACTTTGAGGGATGAAGTC 58.691 41.667 0.00 0.00 32.79 3.01
2650 6094 5.310409 TCTGAAACTTTGAGGGATGAAGT 57.690 39.130 0.00 0.00 35.27 3.01
2651 6095 6.830873 AATCTGAAACTTTGAGGGATGAAG 57.169 37.500 0.00 0.00 0.00 3.02
2652 6096 7.601705 AAAATCTGAAACTTTGAGGGATGAA 57.398 32.000 0.00 0.00 0.00 2.57
2653 6097 7.601705 AAAAATCTGAAACTTTGAGGGATGA 57.398 32.000 0.00 0.00 0.00 2.92
2694 6138 9.840427 CCTCATGAACAGTAAATTTAAAACGAT 57.160 29.630 0.00 0.00 0.00 3.73
2695 6139 8.293867 CCCTCATGAACAGTAAATTTAAAACGA 58.706 33.333 0.00 0.00 0.00 3.85
2696 6140 8.079809 ACCCTCATGAACAGTAAATTTAAAACG 58.920 33.333 0.00 0.00 0.00 3.60
2697 6141 9.191995 CACCCTCATGAACAGTAAATTTAAAAC 57.808 33.333 0.00 0.00 0.00 2.43
2698 6142 7.870445 GCACCCTCATGAACAGTAAATTTAAAA 59.130 33.333 0.00 0.00 0.00 1.52
2699 6143 7.375053 GCACCCTCATGAACAGTAAATTTAAA 58.625 34.615 0.00 0.00 0.00 1.52
2700 6144 6.071616 GGCACCCTCATGAACAGTAAATTTAA 60.072 38.462 0.00 0.00 0.00 1.52
2701 6145 5.417580 GGCACCCTCATGAACAGTAAATTTA 59.582 40.000 0.00 0.00 0.00 1.40
2702 6146 4.220602 GGCACCCTCATGAACAGTAAATTT 59.779 41.667 0.00 0.00 0.00 1.82
2703 6147 3.763897 GGCACCCTCATGAACAGTAAATT 59.236 43.478 0.00 0.00 0.00 1.82
2704 6148 3.356290 GGCACCCTCATGAACAGTAAAT 58.644 45.455 0.00 0.00 0.00 1.40
2705 6149 2.790433 GGCACCCTCATGAACAGTAAA 58.210 47.619 0.00 0.00 0.00 2.01
2706 6150 2.489938 GGCACCCTCATGAACAGTAA 57.510 50.000 0.00 0.00 0.00 2.24
2727 6171 3.551496 TTTCAGCTCCCGGGTGCAG 62.551 63.158 40.44 34.57 42.57 4.41
2728 6172 3.551496 CTTTCAGCTCCCGGGTGCA 62.551 63.158 40.44 24.04 42.57 4.57
2729 6173 2.747855 CTTTCAGCTCCCGGGTGC 60.748 66.667 35.10 35.10 42.57 5.01
2730 6174 1.376037 GACTTTCAGCTCCCGGGTG 60.376 63.158 22.86 20.53 44.04 4.61
2731 6175 0.252103 TAGACTTTCAGCTCCCGGGT 60.252 55.000 22.86 0.00 0.00 5.28
2732 6176 0.461961 CTAGACTTTCAGCTCCCGGG 59.538 60.000 16.85 16.85 0.00 5.73
2733 6177 1.135333 GACTAGACTTTCAGCTCCCGG 59.865 57.143 0.00 0.00 0.00 5.73
2734 6178 2.096248 AGACTAGACTTTCAGCTCCCG 58.904 52.381 0.00 0.00 0.00 5.14
2735 6179 3.093057 TGAGACTAGACTTTCAGCTCCC 58.907 50.000 0.00 0.00 0.00 4.30
2736 6180 5.337578 AATGAGACTAGACTTTCAGCTCC 57.662 43.478 0.00 0.00 0.00 4.70
2737 6181 6.978080 CCTAAATGAGACTAGACTTTCAGCTC 59.022 42.308 0.00 0.00 0.00 4.09
2738 6182 6.665680 TCCTAAATGAGACTAGACTTTCAGCT 59.334 38.462 0.00 0.00 0.00 4.24
2739 6183 6.868622 TCCTAAATGAGACTAGACTTTCAGC 58.131 40.000 0.00 0.00 0.00 4.26
2740 6184 9.959749 GTATCCTAAATGAGACTAGACTTTCAG 57.040 37.037 0.00 0.00 0.00 3.02
2741 6185 9.702253 AGTATCCTAAATGAGACTAGACTTTCA 57.298 33.333 0.00 0.00 35.17 2.69
2749 6193 8.280084 ACACCACTAGTATCCTAAATGAGACTA 58.720 37.037 0.00 0.00 37.87 2.59
2750 6194 7.126733 ACACCACTAGTATCCTAAATGAGACT 58.873 38.462 0.00 0.00 39.87 3.24
2751 6195 7.349412 ACACCACTAGTATCCTAAATGAGAC 57.651 40.000 0.00 0.00 0.00 3.36
2752 6196 7.147724 CCAACACCACTAGTATCCTAAATGAGA 60.148 40.741 0.00 0.00 0.00 3.27
2753 6197 6.986817 CCAACACCACTAGTATCCTAAATGAG 59.013 42.308 0.00 0.00 0.00 2.90
2754 6198 6.442564 ACCAACACCACTAGTATCCTAAATGA 59.557 38.462 0.00 0.00 0.00 2.57
2755 6199 6.650120 ACCAACACCACTAGTATCCTAAATG 58.350 40.000 0.00 0.00 0.00 2.32
2756 6200 6.886178 ACCAACACCACTAGTATCCTAAAT 57.114 37.500 0.00 0.00 0.00 1.40
2757 6201 7.983166 ATACCAACACCACTAGTATCCTAAA 57.017 36.000 0.00 0.00 0.00 1.85
2758 6202 7.983166 AATACCAACACCACTAGTATCCTAA 57.017 36.000 0.00 0.00 0.00 2.69
2759 6203 8.060689 TGTAATACCAACACCACTAGTATCCTA 58.939 37.037 0.00 0.00 0.00 2.94
2760 6204 6.899075 TGTAATACCAACACCACTAGTATCCT 59.101 38.462 0.00 0.00 0.00 3.24
2761 6205 7.069085 TCTGTAATACCAACACCACTAGTATCC 59.931 40.741 0.00 0.00 0.00 2.59
2762 6206 7.919621 GTCTGTAATACCAACACCACTAGTATC 59.080 40.741 0.00 0.00 0.00 2.24
2763 6207 7.398047 TGTCTGTAATACCAACACCACTAGTAT 59.602 37.037 0.00 0.00 0.00 2.12
2764 6208 6.720748 TGTCTGTAATACCAACACCACTAGTA 59.279 38.462 0.00 0.00 0.00 1.82
2771 6215 4.261801 AGCATGTCTGTAATACCAACACC 58.738 43.478 0.00 0.00 0.00 4.16
2773 6217 6.294361 AGTAGCATGTCTGTAATACCAACA 57.706 37.500 0.00 0.00 0.00 3.33
2856 6300 4.927425 CGCTACTGCTAACTTTGTTAGGAA 59.073 41.667 16.20 2.64 36.97 3.36
2858 6302 3.062234 GCGCTACTGCTAACTTTGTTAGG 59.938 47.826 16.20 6.09 36.97 2.69
2872 6316 1.935933 AGATTAAACCCGCGCTACTG 58.064 50.000 5.56 0.00 0.00 2.74
2952 6396 2.763651 GCGTGGGTAAAATCGCTCT 58.236 52.632 0.00 0.00 44.28 4.09
2967 6411 2.289444 TGAAAAAGGCTACTAGCAGCGT 60.289 45.455 8.87 6.60 44.75 5.07
2988 6432 5.119694 CGCTTCTAGGAAAAAGGCTTCTAT 58.880 41.667 0.00 0.00 0.00 1.98
2992 6436 3.075148 GACGCTTCTAGGAAAAAGGCTT 58.925 45.455 0.00 0.00 0.00 4.35
2995 6439 2.000447 CCGACGCTTCTAGGAAAAAGG 59.000 52.381 0.00 0.00 0.00 3.11
2996 6440 1.393883 GCCGACGCTTCTAGGAAAAAG 59.606 52.381 0.00 0.00 0.00 2.27
2997 6441 1.435577 GCCGACGCTTCTAGGAAAAA 58.564 50.000 0.00 0.00 0.00 1.94
2998 6442 0.390735 GGCCGACGCTTCTAGGAAAA 60.391 55.000 0.00 0.00 34.44 2.29
2999 6443 1.217244 GGCCGACGCTTCTAGGAAA 59.783 57.895 0.00 0.00 34.44 3.13
3000 6444 1.664321 GAGGCCGACGCTTCTAGGAA 61.664 60.000 0.00 0.00 38.07 3.36
3001 6445 2.044252 AGGCCGACGCTTCTAGGA 60.044 61.111 0.00 0.00 34.44 2.94
3002 6446 2.413765 GAGGCCGACGCTTCTAGG 59.586 66.667 0.00 0.00 38.07 3.02
3003 6447 2.343163 CTGGAGGCCGACGCTTCTAG 62.343 65.000 0.00 0.00 42.00 2.43
3004 6448 2.361992 TGGAGGCCGACGCTTCTA 60.362 61.111 0.00 0.00 40.81 2.10
3005 6449 3.764466 CTGGAGGCCGACGCTTCT 61.764 66.667 0.00 0.00 40.81 2.85
3006 6450 4.821589 CCTGGAGGCCGACGCTTC 62.822 72.222 0.00 0.00 40.29 3.86
3010 6454 4.452733 GAACCCTGGAGGCCGACG 62.453 72.222 0.00 0.00 40.58 5.12
3011 6455 4.452733 CGAACCCTGGAGGCCGAC 62.453 72.222 0.00 0.00 40.58 4.79
3013 6457 4.760047 CACGAACCCTGGAGGCCG 62.760 72.222 0.00 0.00 40.58 6.13
3017 6461 3.958147 ATGCGCACGAACCCTGGAG 62.958 63.158 14.90 0.00 0.00 3.86
3018 6462 4.015406 ATGCGCACGAACCCTGGA 62.015 61.111 14.90 0.00 0.00 3.86
3019 6463 3.803082 CATGCGCACGAACCCTGG 61.803 66.667 14.90 0.00 0.00 4.45
3020 6464 3.803082 CCATGCGCACGAACCCTG 61.803 66.667 14.90 4.79 0.00 4.45
3037 6481 4.802051 TTGATCCTGCCCTGCGCC 62.802 66.667 4.18 0.00 36.24 6.53
3038 6482 3.207669 CTTGATCCTGCCCTGCGC 61.208 66.667 0.00 0.00 38.31 6.09
3039 6483 2.515523 CCTTGATCCTGCCCTGCG 60.516 66.667 0.00 0.00 0.00 5.18
3040 6484 2.832201 GCCTTGATCCTGCCCTGC 60.832 66.667 0.00 0.00 0.00 4.85
3041 6485 2.515523 CGCCTTGATCCTGCCCTG 60.516 66.667 0.00 0.00 0.00 4.45
3042 6486 4.496336 GCGCCTTGATCCTGCCCT 62.496 66.667 0.00 0.00 0.00 5.19
3049 6493 4.166011 GTGTGCCGCGCCTTGATC 62.166 66.667 0.00 0.00 0.00 2.92
3061 6505 2.182842 GGATGGAGATGGCGTGTGC 61.183 63.158 0.00 0.00 41.71 4.57
3062 6506 0.179037 ATGGATGGAGATGGCGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3063 6507 0.179037 CATGGATGGAGATGGCGTGT 60.179 55.000 0.00 0.00 0.00 4.49
3064 6508 1.512996 GCATGGATGGAGATGGCGTG 61.513 60.000 0.00 0.00 0.00 5.34
3065 6509 1.228063 GCATGGATGGAGATGGCGT 60.228 57.895 0.00 0.00 0.00 5.68
3066 6510 0.608308 ATGCATGGATGGAGATGGCG 60.608 55.000 0.00 0.00 0.00 5.69
3067 6511 1.174783 GATGCATGGATGGAGATGGC 58.825 55.000 2.46 0.00 0.00 4.40
3068 6512 1.835494 GGATGCATGGATGGAGATGG 58.165 55.000 2.46 0.00 0.00 3.51
3069 6513 1.450025 CGGATGCATGGATGGAGATG 58.550 55.000 2.46 0.00 0.00 2.90
3070 6514 0.327259 CCGGATGCATGGATGGAGAT 59.673 55.000 2.46 0.00 0.00 2.75
3071 6515 1.756665 CCGGATGCATGGATGGAGA 59.243 57.895 2.46 0.00 0.00 3.71
3072 6516 1.970114 GCCGGATGCATGGATGGAG 60.970 63.158 5.05 0.00 40.77 3.86
3073 6517 1.998444 AAGCCGGATGCATGGATGGA 61.998 55.000 5.05 0.00 44.83 3.41
3074 6518 1.521450 GAAGCCGGATGCATGGATGG 61.521 60.000 5.05 1.32 44.83 3.51
3075 6519 1.521450 GGAAGCCGGATGCATGGATG 61.521 60.000 5.05 0.00 44.83 3.51
3076 6520 1.228367 GGAAGCCGGATGCATGGAT 60.228 57.895 5.05 0.00 44.83 3.41
3077 6521 2.192979 GGAAGCCGGATGCATGGA 59.807 61.111 5.05 0.00 44.83 3.41
3078 6522 3.282157 CGGAAGCCGGATGCATGG 61.282 66.667 5.05 0.09 44.15 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.