Multiple sequence alignment - TraesCS5D01G019700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G019700 chr5D 100.000 5911 0 0 1 5911 12590895 12596805 0.000000e+00 10916.0
1 TraesCS5D01G019700 chr5D 85.652 230 17 11 5591 5816 12923519 12923736 1.660000e-55 228.0
2 TraesCS5D01G019700 chr5A 94.130 1959 74 12 1573 3522 9651269 9653195 0.000000e+00 2942.0
3 TraesCS5D01G019700 chr5A 86.794 939 67 18 639 1556 9650205 9651107 0.000000e+00 994.0
4 TraesCS5D01G019700 chr5A 84.413 988 79 38 3857 4809 9653531 9654478 0.000000e+00 902.0
5 TraesCS5D01G019700 chr5A 94.332 247 13 1 3522 3767 9653290 9653536 1.550000e-100 377.0
6 TraesCS5D01G019700 chr5A 77.425 567 57 31 4833 5386 9654536 9655044 7.550000e-69 272.0
7 TraesCS5D01G019700 chr5A 78.218 404 32 29 5444 5838 9655059 9655415 2.160000e-49 207.0
8 TraesCS5D01G019700 chr5A 87.234 94 10 2 543 634 9649395 9649488 8.100000e-19 106.0
9 TraesCS5D01G019700 chr5B 93.342 1622 58 15 2033 3633 12333259 12331667 0.000000e+00 2351.0
10 TraesCS5D01G019700 chr5B 93.053 619 37 4 1573 2187 12333901 12333285 0.000000e+00 900.0
11 TraesCS5D01G019700 chr5B 92.295 623 34 6 3661 4279 12331669 12331057 0.000000e+00 872.0
12 TraesCS5D01G019700 chr5B 86.327 746 41 25 665 1375 12334864 12334145 0.000000e+00 756.0
13 TraesCS5D01G019700 chr5B 81.202 782 71 43 5159 5911 12329121 12328387 1.440000e-155 560.0
14 TraesCS5D01G019700 chr5B 78.737 649 94 31 2269 2910 692252066 692251455 1.540000e-105 394.0
15 TraesCS5D01G019700 chr5B 86.982 338 16 13 4830 5141 12330366 12330031 7.290000e-94 355.0
16 TraesCS5D01G019700 chr5B 78.732 489 66 25 4279 4753 12330926 12330462 5.790000e-75 292.0
17 TraesCS5D01G019700 chr5B 94.737 38 1 1 598 634 341059267 341059230 2.300000e-04 58.4
18 TraesCS5D01G019700 chr6A 89.074 540 37 9 1 521 609831536 609831000 0.000000e+00 651.0
19 TraesCS5D01G019700 chr6A 86.932 176 19 3 5641 5816 72732047 72731876 1.680000e-45 195.0
20 TraesCS5D01G019700 chr2B 83.146 534 57 12 1 518 514354357 514353841 1.940000e-124 457.0
21 TraesCS5D01G019700 chr4A 77.004 474 51 28 5091 5541 730991270 730991708 9.970000e-53 219.0
22 TraesCS5D01G019700 chr4A 73.846 260 67 1 10 268 720872129 720871870 1.050000e-17 102.0
23 TraesCS5D01G019700 chr4A 92.063 63 1 2 4945 5003 730991154 730991216 1.060000e-12 86.1
24 TraesCS5D01G019700 chr4A 100.000 36 0 0 4718 4753 730990987 730991022 3.820000e-07 67.6
25 TraesCS5D01G019700 chr4B 87.931 174 19 2 5643 5816 320751587 320751758 2.790000e-48 204.0
26 TraesCS5D01G019700 chr1D 80.126 317 28 18 5602 5903 493261676 493261380 2.790000e-48 204.0
27 TraesCS5D01G019700 chr3A 87.356 174 19 3 5643 5816 33531639 33531469 4.670000e-46 196.0
28 TraesCS5D01G019700 chr3A 86.782 174 19 3 5643 5816 738883333 738883502 2.170000e-44 191.0
29 TraesCS5D01G019700 chr2A 87.356 174 19 3 5643 5816 21602937 21602767 4.670000e-46 196.0
30 TraesCS5D01G019700 chr1A 86.782 174 20 3 5643 5816 561069409 561069239 2.170000e-44 191.0
31 TraesCS5D01G019700 chr6D 76.978 278 60 2 1 277 28989428 28989702 7.930000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G019700 chr5D 12590895 12596805 5910 False 10916.000000 10916 100.000 1 5911 1 chr5D.!!$F1 5910
1 TraesCS5D01G019700 chr5A 9649395 9655415 6020 False 828.571429 2942 86.078 543 5838 7 chr5A.!!$F1 5295
2 TraesCS5D01G019700 chr5B 12328387 12334864 6477 True 869.428571 2351 87.419 665 5911 7 chr5B.!!$R3 5246
3 TraesCS5D01G019700 chr5B 692251455 692252066 611 True 394.000000 394 78.737 2269 2910 1 chr5B.!!$R2 641
4 TraesCS5D01G019700 chr6A 609831000 609831536 536 True 651.000000 651 89.074 1 521 1 chr6A.!!$R2 520
5 TraesCS5D01G019700 chr2B 514353841 514354357 516 True 457.000000 457 83.146 1 518 1 chr2B.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 1567 0.394762 CCACCCACACCATGATGGAG 60.395 60.0 20.11 13.43 40.96 3.86 F
2005 2930 0.254747 GTGCTGTGGTATGCCCCTTA 59.745 55.0 0.00 0.00 0.00 2.69 F
2409 3526 0.607217 TTGCATCAGGAGTGTGGCAG 60.607 55.0 0.00 0.00 35.98 4.85 F
3754 4980 2.457366 AAGCTTGGATCGAGACGTTT 57.543 45.0 0.00 0.00 0.00 3.60 F
4372 5745 0.114168 CCATGGTTTGTCTCCCCCAA 59.886 55.0 2.57 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2666 3785 0.324943 AAGAAGCCACGCACCTGTAT 59.675 50.0 0.0 0.00 0.00 2.29 R
3543 4768 0.382158 CTAGCTCTTGCGATCGGACA 59.618 55.0 18.3 4.07 45.42 4.02 R
3781 5007 0.523072 TGTTACTACACGAGGGACGC 59.477 55.0 0.0 0.00 46.94 5.19 R
4641 6022 0.031585 TCCGTCACCTTCAAGACACG 59.968 55.0 0.0 0.00 34.48 4.49 R
5770 8173 0.247460 CAACGCACAGATCAGGGAGA 59.753 55.0 0.0 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.338809 TCTCTGAACAACCATGGACCT 58.661 47.619 21.47 0.00 0.00 3.85
68 70 1.202927 CCCCAGACATCCAAACTGTGT 60.203 52.381 0.00 0.00 0.00 3.72
75 77 3.476552 ACATCCAAACTGTGTCGTGAAT 58.523 40.909 0.00 0.00 0.00 2.57
100 102 2.024176 ATCACGGATTTTCCTCCACG 57.976 50.000 0.00 0.00 34.78 4.94
153 155 6.484288 CCTCATATCCCCATACAAAGCATTA 58.516 40.000 0.00 0.00 0.00 1.90
221 223 4.752879 CGGTTCCGCCATGTCCGT 62.753 66.667 0.00 0.00 36.99 4.69
224 226 2.100631 GTTCCGCCATGTCCGTCAG 61.101 63.158 0.00 0.00 0.00 3.51
316 332 2.314561 TCTTTTGCGATCTTGCGTTG 57.685 45.000 0.00 0.00 37.81 4.10
372 389 2.646175 CCGCCTCCTCCTTGACGAA 61.646 63.158 0.00 0.00 0.00 3.85
373 390 1.292223 CGCCTCCTCCTTGACGAAA 59.708 57.895 0.00 0.00 0.00 3.46
380 397 1.266989 CCTCCTTGACGAAAAACAGCC 59.733 52.381 0.00 0.00 0.00 4.85
394 411 3.340814 AACAGCCAGGTAGATCACTTG 57.659 47.619 0.00 0.00 34.09 3.16
395 412 1.065854 ACAGCCAGGTAGATCACTTGC 60.066 52.381 0.00 0.00 32.98 4.01
400 417 2.002586 CAGGTAGATCACTTGCCAACG 58.997 52.381 0.00 0.00 0.00 4.10
401 418 1.899814 AGGTAGATCACTTGCCAACGA 59.100 47.619 0.00 0.00 0.00 3.85
403 420 2.673368 GGTAGATCACTTGCCAACGAAG 59.327 50.000 0.00 0.00 0.00 3.79
412 430 1.743252 GCCAACGAAGAGGGAGCAG 60.743 63.158 0.00 0.00 0.00 4.24
461 479 3.442625 TCGACAGGAAGCGAGAGATAAAA 59.557 43.478 0.00 0.00 32.13 1.52
491 509 3.849951 GGCCGCCGGAAGAGATCA 61.850 66.667 7.68 0.00 0.00 2.92
524 543 3.652057 TTTTTGCCTAGGGGAGATGAG 57.348 47.619 11.72 0.00 33.58 2.90
525 544 2.568546 TTTGCCTAGGGGAGATGAGA 57.431 50.000 11.72 0.00 33.58 3.27
526 545 2.568546 TTGCCTAGGGGAGATGAGAA 57.431 50.000 11.72 0.00 33.58 2.87
527 546 2.568546 TGCCTAGGGGAGATGAGAAA 57.431 50.000 11.72 0.00 33.58 2.52
528 547 3.066208 TGCCTAGGGGAGATGAGAAAT 57.934 47.619 11.72 0.00 33.58 2.17
529 548 2.975489 TGCCTAGGGGAGATGAGAAATC 59.025 50.000 11.72 0.00 33.58 2.17
530 549 2.304470 GCCTAGGGGAGATGAGAAATCC 59.696 54.545 11.72 0.00 33.58 3.01
531 550 3.868062 CCTAGGGGAGATGAGAAATCCT 58.132 50.000 0.00 0.00 33.40 3.24
532 551 3.582208 CCTAGGGGAGATGAGAAATCCTG 59.418 52.174 0.00 0.00 33.40 3.86
533 552 3.142579 AGGGGAGATGAGAAATCCTGT 57.857 47.619 0.00 0.00 33.40 4.00
534 553 4.286813 AGGGGAGATGAGAAATCCTGTA 57.713 45.455 0.00 0.00 33.40 2.74
535 554 3.970640 AGGGGAGATGAGAAATCCTGTAC 59.029 47.826 0.00 0.00 33.40 2.90
536 555 3.243907 GGGGAGATGAGAAATCCTGTACG 60.244 52.174 0.00 0.00 33.40 3.67
537 556 3.385577 GGAGATGAGAAATCCTGTACGC 58.614 50.000 0.00 0.00 0.00 4.42
538 557 3.181475 GGAGATGAGAAATCCTGTACGCA 60.181 47.826 0.00 0.00 0.00 5.24
539 558 4.502259 GGAGATGAGAAATCCTGTACGCAT 60.502 45.833 0.00 0.00 0.00 4.73
540 559 5.028549 AGATGAGAAATCCTGTACGCATT 57.971 39.130 0.00 0.00 0.00 3.56
541 560 6.161855 AGATGAGAAATCCTGTACGCATTA 57.838 37.500 0.00 0.00 0.00 1.90
542 561 6.763355 AGATGAGAAATCCTGTACGCATTAT 58.237 36.000 0.00 0.00 0.00 1.28
543 562 7.220030 AGATGAGAAATCCTGTACGCATTATT 58.780 34.615 0.00 0.00 0.00 1.40
544 563 7.716998 AGATGAGAAATCCTGTACGCATTATTT 59.283 33.333 0.00 0.00 0.00 1.40
545 564 8.902540 ATGAGAAATCCTGTACGCATTATTTA 57.097 30.769 0.00 0.00 0.00 1.40
546 565 8.138365 TGAGAAATCCTGTACGCATTATTTAC 57.862 34.615 0.00 0.00 0.00 2.01
574 593 2.505407 TCATTAGTGGTACATGGCTGCT 59.495 45.455 0.00 0.00 44.52 4.24
589 608 3.979739 GCTAGGGCTACCTCGCGG 61.980 72.222 6.13 0.00 46.95 6.46
590 609 3.296054 CTAGGGCTACCTCGCGGG 61.296 72.222 6.13 0.59 46.95 6.13
596 615 2.838225 CTACCTCGCGGGGTGGAT 60.838 66.667 40.38 16.82 39.74 3.41
597 616 2.836360 TACCTCGCGGGGTGGATC 60.836 66.667 40.38 0.00 40.22 3.36
598 617 3.665515 TACCTCGCGGGGTGGATCA 62.666 63.158 40.38 18.30 40.22 2.92
599 618 3.781307 CCTCGCGGGGTGGATCAA 61.781 66.667 19.58 0.00 0.00 2.57
607 627 2.210116 CGGGGTGGATCAAATAAGTCG 58.790 52.381 0.00 0.00 0.00 4.18
624 644 1.207329 GTCGTACTCCTGGCCTTTCAT 59.793 52.381 3.32 0.00 0.00 2.57
628 648 1.366319 ACTCCTGGCCTTTCATGAGT 58.634 50.000 3.32 4.01 37.65 3.41
634 654 3.441572 CCTGGCCTTTCATGAGTTTACTG 59.558 47.826 3.32 0.00 0.00 2.74
635 655 4.074970 CTGGCCTTTCATGAGTTTACTGT 58.925 43.478 3.32 0.00 0.00 3.55
639 659 5.351740 GGCCTTTCATGAGTTTACTGTAGAC 59.648 44.000 0.00 0.50 0.00 2.59
640 660 5.932303 GCCTTTCATGAGTTTACTGTAGACA 59.068 40.000 10.63 0.86 0.00 3.41
641 661 6.128526 GCCTTTCATGAGTTTACTGTAGACAC 60.129 42.308 10.63 5.34 0.00 3.67
642 662 7.155328 CCTTTCATGAGTTTACTGTAGACACT 58.845 38.462 10.63 4.16 0.00 3.55
643 663 7.657761 CCTTTCATGAGTTTACTGTAGACACTT 59.342 37.037 10.63 0.98 0.00 3.16
644 664 7.946655 TTCATGAGTTTACTGTAGACACTTG 57.053 36.000 10.63 11.55 0.00 3.16
645 665 5.926542 TCATGAGTTTACTGTAGACACTTGC 59.073 40.000 10.63 0.00 0.00 4.01
654 1386 6.042638 ACTGTAGACACTTGCAATATCACT 57.957 37.500 0.00 0.00 0.00 3.41
734 1466 3.124636 GGTAACACACGGACATTTAGCTG 59.875 47.826 0.00 0.00 0.00 4.24
809 1546 5.277828 GCATCAACGTTATCTTTATCCACCC 60.278 44.000 0.00 0.00 0.00 4.61
823 1567 0.394762 CCACCCACACCATGATGGAG 60.395 60.000 20.11 13.43 40.96 3.86
858 1602 0.865111 CACGCATTCCTGAACGAACA 59.135 50.000 0.00 0.00 0.00 3.18
859 1603 1.262950 CACGCATTCCTGAACGAACAA 59.737 47.619 0.00 0.00 0.00 2.83
862 1606 2.286713 CGCATTCCTGAACGAACAAACA 60.287 45.455 0.00 0.00 0.00 2.83
866 1610 2.198406 TCCTGAACGAACAAACAGACG 58.802 47.619 0.00 0.00 32.90 4.18
1114 1879 2.373707 CCCTCCCTCCCTCTGCTTG 61.374 68.421 0.00 0.00 0.00 4.01
1160 1928 1.104577 GTCGGAGCGAGATCCTTCCT 61.105 60.000 5.81 0.00 36.23 3.36
1299 2072 0.537188 TCTTTCCAGGATCCTCGTGC 59.463 55.000 12.69 0.00 31.43 5.34
1301 2074 2.238847 TTTCCAGGATCCTCGTGCGG 62.239 60.000 12.69 10.21 31.43 5.69
1336 2109 2.866762 GCTTGTATGCTTCGGAGTTAGG 59.133 50.000 0.00 0.00 0.00 2.69
1390 2163 5.486526 AGCCTTGTCTAAATCTGAGTTGAG 58.513 41.667 0.00 0.00 0.00 3.02
1394 2167 7.577807 GCCTTGTCTAAATCTGAGTTGAGTCTA 60.578 40.741 0.00 0.00 0.00 2.59
1395 2168 8.474025 CCTTGTCTAAATCTGAGTTGAGTCTAT 58.526 37.037 0.00 0.00 0.00 1.98
1406 2179 2.672961 TGAGTCTATGCAAGGTTCGG 57.327 50.000 0.00 0.00 0.00 4.30
1407 2180 1.207089 TGAGTCTATGCAAGGTTCGGG 59.793 52.381 0.00 0.00 0.00 5.14
1408 2181 1.207329 GAGTCTATGCAAGGTTCGGGT 59.793 52.381 0.00 0.00 0.00 5.28
1409 2182 1.207329 AGTCTATGCAAGGTTCGGGTC 59.793 52.381 0.00 0.00 0.00 4.46
1410 2183 1.207329 GTCTATGCAAGGTTCGGGTCT 59.793 52.381 0.00 0.00 0.00 3.85
1412 2185 1.207089 CTATGCAAGGTTCGGGTCTGA 59.793 52.381 0.00 0.00 0.00 3.27
1448 2221 5.306394 GGGAAGCCTAATAATAGACACCAC 58.694 45.833 0.00 0.00 0.00 4.16
1484 2257 7.337184 TGTGTACAACAAATACTGAAACAAGGA 59.663 33.333 0.00 0.00 35.24 3.36
1497 2270 4.653341 TGAAACAAGGACCATTGGATTTGT 59.347 37.500 10.37 12.86 34.36 2.83
1524 2297 8.737168 ATTACAGATGCAGCAATTACTAGAAA 57.263 30.769 4.07 0.00 0.00 2.52
1525 2298 8.560355 TTACAGATGCAGCAATTACTAGAAAA 57.440 30.769 4.07 0.00 0.00 2.29
1532 2305 8.703604 TGCAGCAATTACTAGAAAAGTAGTAG 57.296 34.615 0.00 0.00 41.70 2.57
1546 2319 5.579564 AAGTAGTAGTACAAGCACTAGCC 57.420 43.478 10.33 0.00 43.56 3.93
1556 2329 4.256920 ACAAGCACTAGCCAGTTGATAAG 58.743 43.478 0.00 0.00 43.56 1.73
1559 2332 3.009723 GCACTAGCCAGTTGATAAGCAA 58.990 45.455 0.00 0.00 30.46 3.91
1561 2334 4.256920 CACTAGCCAGTTGATAAGCAAGT 58.743 43.478 0.00 0.00 40.77 3.16
1562 2335 5.419542 CACTAGCCAGTTGATAAGCAAGTA 58.580 41.667 0.00 0.00 38.07 2.24
1564 2337 4.286297 AGCCAGTTGATAAGCAAGTACA 57.714 40.909 0.00 0.00 38.07 2.90
1565 2338 4.651778 AGCCAGTTGATAAGCAAGTACAA 58.348 39.130 0.00 0.00 38.07 2.41
1566 2339 4.697352 AGCCAGTTGATAAGCAAGTACAAG 59.303 41.667 0.00 0.00 38.07 3.16
1567 2340 4.672801 GCCAGTTGATAAGCAAGTACAAGC 60.673 45.833 0.00 0.00 38.07 4.01
1568 2341 4.455533 CCAGTTGATAAGCAAGTACAAGCA 59.544 41.667 11.42 0.00 38.07 3.91
1569 2342 5.385617 CAGTTGATAAGCAAGTACAAGCAC 58.614 41.667 11.42 1.13 38.07 4.40
1570 2343 5.180117 CAGTTGATAAGCAAGTACAAGCACT 59.820 40.000 11.42 3.13 38.07 4.40
1571 2344 6.368791 CAGTTGATAAGCAAGTACAAGCACTA 59.631 38.462 11.42 3.87 38.07 2.74
1586 2508 5.070446 ACAAGCACTAGCCAGTATTGCTATA 59.930 40.000 8.63 0.00 44.64 1.31
1587 2509 6.169094 CAAGCACTAGCCAGTATTGCTATAT 58.831 40.000 2.55 0.00 44.64 0.86
1703 2627 0.537653 TGTGGAACTGTCGTGGTTGA 59.462 50.000 0.00 0.00 38.04 3.18
1723 2647 8.110271 TGGTTGACCAATACATAAAAGGTATCA 58.890 33.333 0.00 0.00 44.35 2.15
1726 2650 8.601845 TGACCAATACATAAAAGGTATCATCG 57.398 34.615 0.00 0.00 31.32 3.84
1750 2674 4.138290 CTCCAGAATCGGCTTCTACTAGA 58.862 47.826 0.00 0.00 42.48 2.43
1759 2683 8.874744 AATCGGCTTCTACTAGACTAAATTTC 57.125 34.615 0.00 0.00 0.00 2.17
1760 2684 7.400599 TCGGCTTCTACTAGACTAAATTTCA 57.599 36.000 0.00 0.00 0.00 2.69
1761 2685 7.256286 TCGGCTTCTACTAGACTAAATTTCAC 58.744 38.462 0.00 0.00 0.00 3.18
1762 2686 7.122353 TCGGCTTCTACTAGACTAAATTTCACT 59.878 37.037 0.00 0.00 0.00 3.41
1984 2909 4.005650 CTGACATTAGCCACATGAACACT 58.994 43.478 0.00 0.00 0.00 3.55
2005 2930 0.254747 GTGCTGTGGTATGCCCCTTA 59.745 55.000 0.00 0.00 0.00 2.69
2013 2938 2.129363 GGTATGCCCCTTAACCCTGTA 58.871 52.381 0.00 0.00 0.00 2.74
2024 2949 6.354477 CCCCTTAACCCTGTATTTATGTCCTT 60.354 42.308 0.00 0.00 0.00 3.36
2134 3240 3.367321 TCCATGTGATCCGTGTAGGTTA 58.633 45.455 0.00 0.00 41.99 2.85
2182 3288 6.155475 AGGAATGTATGTCTTCTCTACTGC 57.845 41.667 0.00 0.00 0.00 4.40
2198 3304 1.621814 ACTGCCCTTTTAGCTCGTACA 59.378 47.619 0.00 0.00 0.00 2.90
2199 3305 2.038033 ACTGCCCTTTTAGCTCGTACAA 59.962 45.455 0.00 0.00 0.00 2.41
2250 3367 6.895204 TCTTCCCGGATTTCCATTAAAGAAAT 59.105 34.615 0.73 13.72 44.57 2.17
2315 3432 3.138304 CAGCTGGCTGTTACTGTGTTAA 58.862 45.455 13.76 0.00 39.10 2.01
2316 3433 3.563808 CAGCTGGCTGTTACTGTGTTAAA 59.436 43.478 13.76 0.00 39.10 1.52
2353 3470 2.498167 ACTCAGCAAACAAGTAGCCAG 58.502 47.619 0.00 0.00 0.00 4.85
2404 3521 2.039480 AGTCATGTTGCATCAGGAGTGT 59.961 45.455 16.70 1.96 31.89 3.55
2405 3522 2.161012 GTCATGTTGCATCAGGAGTGTG 59.839 50.000 12.12 0.43 0.00 3.82
2406 3523 1.471287 CATGTTGCATCAGGAGTGTGG 59.529 52.381 3.34 0.00 0.00 4.17
2407 3524 0.890542 TGTTGCATCAGGAGTGTGGC 60.891 55.000 0.00 0.00 0.00 5.01
2409 3526 0.607217 TTGCATCAGGAGTGTGGCAG 60.607 55.000 0.00 0.00 35.98 4.85
2434 3551 8.164733 AGAGGTCTCCGAAGAATATATGAAGTA 58.835 37.037 0.00 0.00 31.93 2.24
2545 3664 3.494332 AGAGGCAGATATTTGATTGGCC 58.506 45.455 0.00 0.00 40.18 5.36
2548 3667 2.901839 GGCAGATATTTGATTGGCCCAT 59.098 45.455 0.00 0.00 33.93 4.00
2605 3724 4.836825 AGCCTATGCATACAATTATCGCT 58.163 39.130 1.16 0.00 41.13 4.93
2644 3763 4.443978 AGGTTATCTGATCATTGGGTGG 57.556 45.455 0.00 0.00 0.00 4.61
2869 3989 5.585844 TGCGATTGTGAATGTGATCAGTAAT 59.414 36.000 0.00 0.00 0.00 1.89
2938 4058 5.012148 AGCTGGAACATATTATCCTAAGCGT 59.988 40.000 5.39 0.00 38.87 5.07
3030 4150 4.771577 TGCCATAGTGCCCAATTATATTGG 59.228 41.667 10.77 10.77 39.25 3.16
3220 4340 8.422973 TGCTTCAAATTTTGAACCATATATGC 57.577 30.769 18.29 16.84 44.21 3.14
3247 4367 6.647895 GCTGAAAAATTGTTTCCATCTGATGT 59.352 34.615 15.95 0.00 0.00 3.06
3256 4377 9.823647 ATTGTTTCCATCTGATGTAACTAGTAG 57.176 33.333 22.42 0.00 0.00 2.57
3304 4433 7.826260 TCCTTCATTGAACTTTGTTGTTTTC 57.174 32.000 0.00 0.00 0.00 2.29
3408 4537 5.175388 AGTTGAGGTATGGTTTCCCTTAC 57.825 43.478 0.00 0.00 39.51 2.34
3574 4799 4.864806 CGCAAGAGCTAGAATGTTCTTACA 59.135 41.667 0.00 0.00 35.78 2.41
3578 4803 8.239998 GCAAGAGCTAGAATGTTCTTACAAATT 58.760 33.333 0.00 0.00 35.78 1.82
3633 4858 3.748083 TGAGGATCTGCAATAGATTGGC 58.252 45.455 4.49 0.00 46.12 4.52
3660 4885 4.445557 AGCAAGGAGAAAGAAAGAAGGT 57.554 40.909 0.00 0.00 0.00 3.50
3754 4980 2.457366 AAGCTTGGATCGAGACGTTT 57.543 45.000 0.00 0.00 0.00 3.60
3767 4993 4.330347 TCGAGACGTTTTTCAAACATGACA 59.670 37.500 0.00 0.00 0.00 3.58
3781 5007 9.681692 TTCAAACATGACAAACTCAATTGATAG 57.318 29.630 8.96 0.48 33.52 2.08
3790 5016 2.223829 ACTCAATTGATAGCGTCCCTCG 60.224 50.000 8.96 0.00 43.12 4.63
3793 5019 1.112113 ATTGATAGCGTCCCTCGTGT 58.888 50.000 0.00 0.00 42.13 4.49
3798 5024 2.401583 TAGCGTCCCTCGTGTAGTAA 57.598 50.000 0.00 0.00 42.13 2.24
3889 5115 8.504005 GTTTGCAGTTCTTCAGCTTATAGTTAA 58.496 33.333 0.00 0.00 0.00 2.01
4101 5327 4.907879 AAGTTGAGCAGAAACCTTCTTG 57.092 40.909 0.00 0.00 38.11 3.02
4122 5348 4.639334 TGTACACAATACTTTTACCCGCA 58.361 39.130 0.00 0.00 0.00 5.69
4239 5481 3.670377 GGCCGGCCAGTGTTTGAC 61.670 66.667 40.73 8.62 35.81 3.18
4240 5482 3.670377 GCCGGCCAGTGTTTGACC 61.670 66.667 18.11 0.00 0.00 4.02
4241 5483 2.203280 CCGGCCAGTGTTTGACCA 60.203 61.111 2.24 0.00 0.00 4.02
4245 5487 0.751643 GGCCAGTGTTTGACCAGTGT 60.752 55.000 0.00 0.00 34.58 3.55
4263 5505 3.454812 AGTGTTGTGTTGTAGAGGAACCT 59.545 43.478 0.00 0.00 0.00 3.50
4281 5523 5.766174 GGAACCTTGACCACTGTTGTATTAA 59.234 40.000 0.00 0.00 0.00 1.40
4282 5524 6.433093 GGAACCTTGACCACTGTTGTATTAAT 59.567 38.462 0.00 0.00 0.00 1.40
4283 5525 6.817765 ACCTTGACCACTGTTGTATTAATG 57.182 37.500 0.00 0.00 0.00 1.90
4285 5527 4.937696 TGACCACTGTTGTATTAATGCG 57.062 40.909 0.00 0.00 0.00 4.73
4291 5664 6.183360 ACCACTGTTGTATTAATGCGATGAAG 60.183 38.462 0.00 0.00 0.00 3.02
4304 5677 3.067106 GCGATGAAGTTCCTTTCTGACA 58.933 45.455 0.00 0.00 0.00 3.58
4306 5679 4.154918 GCGATGAAGTTCCTTTCTGACAAT 59.845 41.667 0.00 0.00 0.00 2.71
4327 5700 4.439305 TCCAAATTCATTTCAGGCGAAG 57.561 40.909 0.00 0.00 31.28 3.79
4342 5715 1.910722 GAAGGCAGGAGCAGGATCA 59.089 57.895 0.00 0.00 44.61 2.92
4345 5718 2.588439 GCAGGAGCAGGATCAGCA 59.412 61.111 11.35 0.00 41.58 4.41
4348 5721 0.747283 CAGGAGCAGGATCAGCAACC 60.747 60.000 11.35 12.58 0.00 3.77
4361 5734 1.693606 CAGCAACCCTTTCCATGGTTT 59.306 47.619 12.58 0.00 42.09 3.27
4368 5741 2.171003 CCTTTCCATGGTTTGTCTCCC 58.829 52.381 12.58 0.00 0.00 4.30
4369 5742 2.171003 CTTTCCATGGTTTGTCTCCCC 58.829 52.381 12.58 0.00 0.00 4.81
4370 5743 0.407918 TTCCATGGTTTGTCTCCCCC 59.592 55.000 12.58 0.00 0.00 5.40
4372 5745 0.114168 CCATGGTTTGTCTCCCCCAA 59.886 55.000 2.57 0.00 0.00 4.12
4375 5748 0.930726 TGGTTTGTCTCCCCCAACTT 59.069 50.000 0.00 0.00 0.00 2.66
4377 5750 2.158579 TGGTTTGTCTCCCCCAACTTAC 60.159 50.000 0.00 0.00 0.00 2.34
4379 5752 3.499745 GGTTTGTCTCCCCCAACTTACAT 60.500 47.826 0.00 0.00 0.00 2.29
4380 5753 3.713826 TTGTCTCCCCCAACTTACATC 57.286 47.619 0.00 0.00 0.00 3.06
4382 5755 1.212195 GTCTCCCCCAACTTACATCCC 59.788 57.143 0.00 0.00 0.00 3.85
4388 5761 2.423373 CCCCAACTTACATCCCCATCAG 60.423 54.545 0.00 0.00 0.00 2.90
4389 5762 2.242196 CCCAACTTACATCCCCATCAGT 59.758 50.000 0.00 0.00 0.00 3.41
4390 5763 3.545703 CCAACTTACATCCCCATCAGTC 58.454 50.000 0.00 0.00 0.00 3.51
4391 5764 3.054434 CCAACTTACATCCCCATCAGTCA 60.054 47.826 0.00 0.00 0.00 3.41
4392 5765 4.567537 CCAACTTACATCCCCATCAGTCAA 60.568 45.833 0.00 0.00 0.00 3.18
4393 5766 4.222124 ACTTACATCCCCATCAGTCAAC 57.778 45.455 0.00 0.00 0.00 3.18
4394 5767 3.054361 ACTTACATCCCCATCAGTCAACC 60.054 47.826 0.00 0.00 0.00 3.77
4396 5769 1.283029 ACATCCCCATCAGTCAACCTG 59.717 52.381 0.00 0.00 42.97 4.00
4397 5770 0.921896 ATCCCCATCAGTCAACCTGG 59.078 55.000 0.00 0.00 41.83 4.45
4399 5772 0.405585 CCCCATCAGTCAACCTGGTT 59.594 55.000 6.18 6.18 41.83 3.67
4402 5779 2.586425 CCATCAGTCAACCTGGTTTGT 58.414 47.619 9.90 0.00 41.83 2.83
4405 5782 4.156556 CCATCAGTCAACCTGGTTTGTATG 59.843 45.833 9.90 10.86 41.83 2.39
4406 5783 3.146066 TCAGTCAACCTGGTTTGTATGC 58.854 45.455 9.90 0.00 41.83 3.14
4409 5786 2.488153 GTCAACCTGGTTTGTATGCTCC 59.512 50.000 9.90 0.00 0.00 4.70
4410 5787 1.468520 CAACCTGGTTTGTATGCTCCG 59.531 52.381 9.90 0.00 0.00 4.63
4412 5789 1.338769 ACCTGGTTTGTATGCTCCGAC 60.339 52.381 0.00 0.00 0.00 4.79
4418 5795 0.529773 TTGTATGCTCCGACGATGGC 60.530 55.000 0.00 0.00 0.00 4.40
4420 5797 0.941463 GTATGCTCCGACGATGGCTG 60.941 60.000 0.00 0.00 0.00 4.85
4421 5798 1.106944 TATGCTCCGACGATGGCTGA 61.107 55.000 0.00 0.00 0.00 4.26
4424 5805 1.880340 CTCCGACGATGGCTGAAGC 60.880 63.158 0.00 0.00 41.14 3.86
4432 5813 2.076100 CGATGGCTGAAGCAACACTAA 58.924 47.619 4.43 0.00 44.36 2.24
4435 5816 4.666237 GATGGCTGAAGCAACACTAAATC 58.334 43.478 4.43 0.00 44.36 2.17
4438 5819 4.216257 TGGCTGAAGCAACACTAAATCTTC 59.784 41.667 4.43 0.00 44.36 2.87
4439 5820 4.379918 GGCTGAAGCAACACTAAATCTTCC 60.380 45.833 4.43 0.00 44.36 3.46
4440 5821 4.379918 GCTGAAGCAACACTAAATCTTCCC 60.380 45.833 0.00 0.00 41.59 3.97
4488 5869 4.829518 GCCAAATTCGCGGACGCC 62.830 66.667 6.13 0.00 39.84 5.68
4553 5934 5.245075 GCTCTTACATAGCCTCTCAGGTTAT 59.755 44.000 0.00 0.00 41.68 1.89
4555 5936 7.039644 GCTCTTACATAGCCTCTCAGGTTATTA 60.040 40.741 0.00 0.00 38.43 0.98
4559 5940 9.998106 TTACATAGCCTCTCAGGTTATTATTTC 57.002 33.333 0.00 0.00 38.43 2.17
4561 5942 8.718656 ACATAGCCTCTCAGGTTATTATTTCTT 58.281 33.333 0.00 0.00 38.43 2.52
4565 5946 7.990314 AGCCTCTCAGGTTATTATTTCTTTCTC 59.010 37.037 0.00 0.00 37.80 2.87
4566 5947 7.990314 GCCTCTCAGGTTATTATTTCTTTCTCT 59.010 37.037 0.00 0.00 37.80 3.10
4571 5952 8.543774 TCAGGTTATTATTTCTTTCTCTCAGCT 58.456 33.333 0.00 0.00 0.00 4.24
4572 5953 8.825745 CAGGTTATTATTTCTTTCTCTCAGCTC 58.174 37.037 0.00 0.00 0.00 4.09
4573 5954 8.543774 AGGTTATTATTTCTTTCTCTCAGCTCA 58.456 33.333 0.00 0.00 0.00 4.26
4576 5957 9.553064 TTATTATTTCTTTCTCTCAGCTCATCC 57.447 33.333 0.00 0.00 0.00 3.51
4577 5958 3.902881 TTCTTTCTCTCAGCTCATCCC 57.097 47.619 0.00 0.00 0.00 3.85
4578 5959 3.113191 TCTTTCTCTCAGCTCATCCCT 57.887 47.619 0.00 0.00 0.00 4.20
4580 5961 4.614475 TCTTTCTCTCAGCTCATCCCTAA 58.386 43.478 0.00 0.00 0.00 2.69
4581 5962 4.648762 TCTTTCTCTCAGCTCATCCCTAAG 59.351 45.833 0.00 0.00 0.00 2.18
4586 5967 3.070734 TCTCAGCTCATCCCTAAGCAATC 59.929 47.826 0.00 0.00 41.06 2.67
4588 5969 3.393609 TCAGCTCATCCCTAAGCAATCAT 59.606 43.478 0.00 0.00 41.06 2.45
4589 5970 4.141321 TCAGCTCATCCCTAAGCAATCATT 60.141 41.667 0.00 0.00 41.06 2.57
4593 5974 5.513788 GCTCATCCCTAAGCAATCATTCCTA 60.514 44.000 0.00 0.00 38.42 2.94
4594 5975 6.119240 TCATCCCTAAGCAATCATTCCTAG 57.881 41.667 0.00 0.00 0.00 3.02
4597 5978 3.070018 CCTAAGCAATCATTCCTAGCCG 58.930 50.000 0.00 0.00 0.00 5.52
4599 5980 2.246719 AGCAATCATTCCTAGCCGAC 57.753 50.000 0.00 0.00 0.00 4.79
4601 5982 1.502231 CAATCATTCCTAGCCGACCG 58.498 55.000 0.00 0.00 0.00 4.79
4602 5983 1.068588 CAATCATTCCTAGCCGACCGA 59.931 52.381 0.00 0.00 0.00 4.69
4604 5985 0.681887 TCATTCCTAGCCGACCGACA 60.682 55.000 0.00 0.00 0.00 4.35
4605 5986 0.174845 CATTCCTAGCCGACCGACAA 59.825 55.000 0.00 0.00 0.00 3.18
4606 5987 0.460311 ATTCCTAGCCGACCGACAAG 59.540 55.000 0.00 0.00 0.00 3.16
4607 5988 2.202756 CCTAGCCGACCGACAAGC 60.203 66.667 0.00 0.00 0.00 4.01
4608 5989 2.571757 CTAGCCGACCGACAAGCA 59.428 61.111 0.00 0.00 0.00 3.91
4609 5990 1.141881 CTAGCCGACCGACAAGCAT 59.858 57.895 0.00 0.00 0.00 3.79
4617 5998 2.223144 CGACCGACAAGCATTTTCTGAA 59.777 45.455 0.00 0.00 0.00 3.02
4624 6005 4.619973 ACAAGCATTTTCTGAATCGCAAA 58.380 34.783 8.34 0.00 0.00 3.68
4625 6006 5.049167 ACAAGCATTTTCTGAATCGCAAAA 58.951 33.333 8.34 0.00 0.00 2.44
4626 6007 5.697633 ACAAGCATTTTCTGAATCGCAAAAT 59.302 32.000 8.34 0.00 31.30 1.82
4628 6009 5.717119 AGCATTTTCTGAATCGCAAAATCT 58.283 33.333 8.34 0.40 29.17 2.40
4631 6012 6.128742 GCATTTTCTGAATCGCAAAATCTTGT 60.129 34.615 0.00 0.00 34.79 3.16
4632 6013 7.569957 GCATTTTCTGAATCGCAAAATCTTGTT 60.570 33.333 0.00 0.00 34.79 2.83
4634 6015 5.947228 TCTGAATCGCAAAATCTTGTTCT 57.053 34.783 0.00 0.00 34.79 3.01
4635 6016 6.317789 TCTGAATCGCAAAATCTTGTTCTT 57.682 33.333 0.00 0.00 34.79 2.52
4636 6017 6.373779 TCTGAATCGCAAAATCTTGTTCTTC 58.626 36.000 0.00 0.00 34.79 2.87
4637 6018 6.017192 TCTGAATCGCAAAATCTTGTTCTTCA 60.017 34.615 0.00 0.00 34.79 3.02
4638 6019 6.680810 TGAATCGCAAAATCTTGTTCTTCAT 58.319 32.000 0.00 0.00 34.79 2.57
4639 6020 7.147312 TGAATCGCAAAATCTTGTTCTTCATT 58.853 30.769 0.00 0.00 34.79 2.57
4640 6021 6.939551 ATCGCAAAATCTTGTTCTTCATTG 57.060 33.333 0.00 0.00 34.79 2.82
4641 6022 4.681025 TCGCAAAATCTTGTTCTTCATTGC 59.319 37.500 0.00 0.00 38.73 3.56
4642 6023 4.938129 GCAAAATCTTGTTCTTCATTGCG 58.062 39.130 0.00 0.00 34.79 4.85
4643 6024 4.445385 GCAAAATCTTGTTCTTCATTGCGT 59.555 37.500 0.00 0.00 34.79 5.24
4647 6028 3.466836 TCTTGTTCTTCATTGCGTGTCT 58.533 40.909 0.00 0.00 0.00 3.41
4760 6141 0.607112 TTGAGAGGTCTGCAGCTGAG 59.393 55.000 20.43 12.20 0.00 3.35
4761 6142 1.153588 GAGAGGTCTGCAGCTGAGC 60.154 63.158 20.43 20.58 0.00 4.26
4762 6143 1.886253 GAGAGGTCTGCAGCTGAGCA 61.886 60.000 27.24 8.44 43.35 4.26
4810 6200 0.749649 TTTGCTTGTGTCGCCCAATT 59.250 45.000 0.00 0.00 0.00 2.32
4812 6202 1.610363 TGCTTGTGTCGCCCAATTTA 58.390 45.000 0.00 0.00 0.00 1.40
4815 6205 2.923020 GCTTGTGTCGCCCAATTTAATG 59.077 45.455 0.00 0.00 0.00 1.90
4818 6208 3.906998 TGTGTCGCCCAATTTAATGTTG 58.093 40.909 0.00 0.00 0.00 3.33
4820 6210 2.267426 GTCGCCCAATTTAATGTTGCC 58.733 47.619 0.00 0.00 0.00 4.52
4822 6212 2.564947 TCGCCCAATTTAATGTTGCCTT 59.435 40.909 0.00 0.00 0.00 4.35
4823 6213 2.672381 CGCCCAATTTAATGTTGCCTTG 59.328 45.455 0.00 0.00 0.00 3.61
4824 6214 3.673902 GCCCAATTTAATGTTGCCTTGT 58.326 40.909 0.00 0.00 0.00 3.16
4825 6215 3.684305 GCCCAATTTAATGTTGCCTTGTC 59.316 43.478 0.00 0.00 0.00 3.18
4826 6216 3.925913 CCCAATTTAATGTTGCCTTGTCG 59.074 43.478 0.00 0.00 0.00 4.35
4827 6217 3.367630 CCAATTTAATGTTGCCTTGTCGC 59.632 43.478 0.00 0.00 0.00 5.19
4895 6319 3.706373 ATCCACAAGGGCGTCGCT 61.706 61.111 18.11 0.00 36.21 4.93
4926 6356 6.581171 ACAAGTGAAGATGGGAAGAAAATC 57.419 37.500 0.00 0.00 0.00 2.17
4928 6358 5.527026 AGTGAAGATGGGAAGAAAATCCT 57.473 39.130 0.00 0.00 39.57 3.24
4929 6359 6.642733 AGTGAAGATGGGAAGAAAATCCTA 57.357 37.500 0.00 0.00 39.57 2.94
4930 6360 6.657875 AGTGAAGATGGGAAGAAAATCCTAG 58.342 40.000 0.00 0.00 39.57 3.02
4931 6361 5.298026 GTGAAGATGGGAAGAAAATCCTAGC 59.702 44.000 0.00 0.00 39.57 3.42
4933 6363 4.786425 AGATGGGAAGAAAATCCTAGCAC 58.214 43.478 0.00 0.00 38.67 4.40
4934 6364 2.985896 TGGGAAGAAAATCCTAGCACG 58.014 47.619 0.00 0.00 39.57 5.34
4935 6365 1.671328 GGGAAGAAAATCCTAGCACGC 59.329 52.381 0.00 0.00 39.57 5.34
4936 6366 2.356135 GGAAGAAAATCCTAGCACGCA 58.644 47.619 0.00 0.00 36.50 5.24
4937 6367 2.352960 GGAAGAAAATCCTAGCACGCAG 59.647 50.000 0.00 0.00 36.50 5.18
4955 6387 1.065273 GCTCCGTATCTTTCGCCGA 59.935 57.895 0.00 0.00 0.00 5.54
4957 6389 1.917273 CTCCGTATCTTTCGCCGAAA 58.083 50.000 12.25 12.25 0.00 3.46
4958 6390 2.470821 CTCCGTATCTTTCGCCGAAAT 58.529 47.619 13.29 1.62 30.85 2.17
4960 6392 1.332904 CCGTATCTTTCGCCGAAATGC 60.333 52.381 13.29 2.04 30.85 3.56
4961 6393 1.593006 CGTATCTTTCGCCGAAATGCT 59.407 47.619 13.29 3.60 30.85 3.79
4962 6394 2.347661 CGTATCTTTCGCCGAAATGCTC 60.348 50.000 13.29 4.19 30.85 4.26
4963 6395 1.017387 ATCTTTCGCCGAAATGCTCC 58.983 50.000 13.29 0.00 30.85 4.70
4964 6396 0.321210 TCTTTCGCCGAAATGCTCCA 60.321 50.000 13.29 0.00 30.85 3.86
4965 6397 0.521291 CTTTCGCCGAAATGCTCCAA 59.479 50.000 13.29 0.00 30.85 3.53
4966 6398 0.521291 TTTCGCCGAAATGCTCCAAG 59.479 50.000 8.43 0.00 0.00 3.61
4967 6399 1.305219 TTCGCCGAAATGCTCCAAGG 61.305 55.000 0.00 0.00 0.00 3.61
5007 6444 1.291272 CCTTTTGCTTCCTGCCTGC 59.709 57.895 0.00 0.00 42.00 4.85
5008 6445 1.183676 CCTTTTGCTTCCTGCCTGCT 61.184 55.000 0.00 0.00 42.00 4.24
5009 6446 0.243095 CTTTTGCTTCCTGCCTGCTC 59.757 55.000 0.00 0.00 42.00 4.26
5029 6474 2.360475 GCCTGGGAGCAACAGTCC 60.360 66.667 0.00 0.00 34.16 3.85
5063 6508 7.047891 TGTGATGTAAATCTCCCTGTCATAAC 58.952 38.462 0.00 0.00 0.00 1.89
5120 6570 1.741706 CCGGTATATACGATGCGGACT 59.258 52.381 18.20 0.00 31.72 3.85
5148 6598 8.025243 CCGATGTTTACGGCTGTATAATAAAT 57.975 34.615 6.15 0.00 43.74 1.40
5223 7580 3.420839 ACAAAAGTTCAAGTTGGCTCG 57.579 42.857 2.34 0.00 0.00 5.03
5238 7597 1.086696 GCTCGCTCTTGTGCCATTTA 58.913 50.000 0.00 0.00 0.00 1.40
5296 7658 1.303236 CCCAATGGGCAGACGACAA 60.303 57.895 4.89 0.00 35.35 3.18
5314 7676 1.134280 CAAGTGTCCCCATCAGCCTAG 60.134 57.143 0.00 0.00 0.00 3.02
5319 7681 2.773918 CCCATCAGCCTAGCCCCA 60.774 66.667 0.00 0.00 0.00 4.96
5385 7752 0.798776 CAGTTGTTCCATCTCCGTGC 59.201 55.000 0.00 0.00 0.00 5.34
5488 7860 1.144276 TCCCGTGTGCTCGTCAAAA 59.856 52.632 0.00 0.00 0.00 2.44
5489 7861 0.462225 TCCCGTGTGCTCGTCAAAAA 60.462 50.000 0.00 0.00 0.00 1.94
5490 7862 0.316689 CCCGTGTGCTCGTCAAAAAC 60.317 55.000 0.00 0.00 0.00 2.43
5491 7863 0.375454 CCGTGTGCTCGTCAAAAACA 59.625 50.000 0.00 0.00 0.00 2.83
5492 7864 1.202087 CCGTGTGCTCGTCAAAAACAA 60.202 47.619 0.00 0.00 0.00 2.83
5493 7865 2.540769 CCGTGTGCTCGTCAAAAACAAT 60.541 45.455 0.00 0.00 0.00 2.71
5494 7866 3.303461 CCGTGTGCTCGTCAAAAACAATA 60.303 43.478 0.00 0.00 0.00 1.90
5495 7867 3.900116 CGTGTGCTCGTCAAAAACAATAG 59.100 43.478 0.00 0.00 0.00 1.73
5496 7868 4.219033 GTGTGCTCGTCAAAAACAATAGG 58.781 43.478 0.00 0.00 0.00 2.57
5497 7869 3.234386 GTGCTCGTCAAAAACAATAGGC 58.766 45.455 0.00 0.00 0.00 3.93
5498 7870 2.095969 TGCTCGTCAAAAACAATAGGCG 60.096 45.455 0.00 0.00 0.00 5.52
5587 7977 4.060038 ACCCGTACAGCGAACCCG 62.060 66.667 0.00 0.00 44.77 5.28
5610 8000 2.826287 CTCTCGCTCTCCGCTCCA 60.826 66.667 0.00 0.00 36.73 3.86
5611 8001 2.124109 TCTCGCTCTCCGCTCCAT 60.124 61.111 0.00 0.00 36.73 3.41
5612 8002 2.128853 CTCTCGCTCTCCGCTCCATC 62.129 65.000 0.00 0.00 36.73 3.51
5613 8003 2.124109 TCGCTCTCCGCTCCATCT 60.124 61.111 0.00 0.00 36.73 2.90
5614 8004 2.027314 CGCTCTCCGCTCCATCTG 59.973 66.667 0.00 0.00 36.13 2.90
5615 8005 2.420890 GCTCTCCGCTCCATCTGG 59.579 66.667 0.00 0.00 35.14 3.86
5616 8006 2.430610 GCTCTCCGCTCCATCTGGT 61.431 63.158 0.00 0.00 36.34 4.00
5617 8007 1.739049 CTCTCCGCTCCATCTGGTC 59.261 63.158 0.00 0.00 36.34 4.02
5618 8008 1.743321 CTCTCCGCTCCATCTGGTCC 61.743 65.000 0.00 0.00 36.34 4.46
5619 8009 3.144120 CTCCGCTCCATCTGGTCCG 62.144 68.421 0.00 0.87 36.34 4.79
5620 8010 3.147595 CCGCTCCATCTGGTCCGA 61.148 66.667 11.05 0.00 36.34 4.55
5621 8011 2.502492 CCGCTCCATCTGGTCCGAT 61.502 63.158 11.05 0.00 36.34 4.18
5622 8012 1.443407 CGCTCCATCTGGTCCGATT 59.557 57.895 0.00 0.00 36.34 3.34
5623 8013 0.598680 CGCTCCATCTGGTCCGATTC 60.599 60.000 0.00 0.00 36.34 2.52
5624 8014 0.598680 GCTCCATCTGGTCCGATTCG 60.599 60.000 0.00 0.00 36.34 3.34
5802 8205 2.027897 CGTTGTGGTCCGGTTCGA 59.972 61.111 0.00 0.00 0.00 3.71
5812 8215 1.586564 CCGGTTCGACTCGATCTGC 60.587 63.158 11.42 0.30 35.23 4.26
5821 8224 1.602851 GACTCGATCTGCTAGCGGTAA 59.397 52.381 22.76 5.37 37.65 2.85
5850 8253 3.664410 GATCGTTCGTGCGTGCGTG 62.664 63.158 9.23 0.00 0.00 5.34
5859 8262 4.464043 GCGTGCGTGCGTTCGTAG 62.464 66.667 10.51 0.00 0.00 3.51
5860 8263 4.464043 CGTGCGTGCGTTCGTAGC 62.464 66.667 3.76 0.00 0.00 3.58
5861 8264 3.399770 GTGCGTGCGTTCGTAGCA 61.400 61.111 7.10 7.10 42.99 3.49
5887 8290 1.442017 GGCTTTTTCGATTGCGCGT 60.442 52.632 8.43 0.00 37.46 6.01
5897 8300 3.371097 ATTGCGCGTCCGATCTGGT 62.371 57.895 8.43 0.00 39.52 4.00
5904 8307 1.141234 GTCCGATCTGGTCCGGTTC 59.859 63.158 0.00 0.00 45.48 3.62
5906 8309 2.582498 CGATCTGGTCCGGTTCGC 60.582 66.667 16.32 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.450457 ACTGGAACAAGGCAATGTTTGAA 59.550 39.130 9.59 0.25 43.31 2.69
75 77 6.522054 GTGGAGGAAAATCCGTGATAATCTA 58.478 40.000 0.00 0.00 42.75 1.98
153 155 1.342975 ACACCAAAAACCTTCAGCCCT 60.343 47.619 0.00 0.00 0.00 5.19
221 223 3.190383 TCATCTGGGAGGAAGAACTGA 57.810 47.619 0.00 0.00 0.00 3.41
224 226 4.848357 TGATTTCATCTGGGAGGAAGAAC 58.152 43.478 0.00 0.00 33.95 3.01
341 357 0.250513 GAGGCGGAGTCAACTGGAAT 59.749 55.000 0.00 0.00 0.00 3.01
343 360 2.283529 GGAGGCGGAGTCAACTGGA 61.284 63.158 0.00 0.00 0.00 3.86
372 389 4.074970 CAAGTGATCTACCTGGCTGTTTT 58.925 43.478 0.00 0.00 0.00 2.43
373 390 3.679389 CAAGTGATCTACCTGGCTGTTT 58.321 45.455 0.00 0.00 0.00 2.83
380 397 2.002586 CGTTGGCAAGTGATCTACCTG 58.997 52.381 0.00 0.00 0.00 4.00
394 411 1.743252 CTGCTCCCTCTTCGTTGGC 60.743 63.158 0.00 0.00 0.00 4.52
395 412 0.390472 GACTGCTCCCTCTTCGTTGG 60.390 60.000 0.00 0.00 0.00 3.77
412 430 1.673337 GCGGTACTGGGTTTGGGAC 60.673 63.158 3.34 0.00 0.00 4.46
417 435 1.219935 GATCGGCGGTACTGGGTTT 59.780 57.895 7.21 0.00 0.00 3.27
418 436 1.956629 CTGATCGGCGGTACTGGGTT 61.957 60.000 7.21 0.00 0.00 4.11
447 465 5.044558 GTCGGAATCTTTTATCTCTCGCTT 58.955 41.667 0.00 0.00 0.00 4.68
461 479 4.143333 CGGCCACCGTCGGAATCT 62.143 66.667 20.51 0.00 42.73 2.40
508 527 2.568546 TTTCTCATCTCCCCTAGGCA 57.431 50.000 2.05 0.00 0.00 4.75
521 540 7.985184 AGTAAATAATGCGTACAGGATTTCTCA 59.015 33.333 9.01 0.00 41.31 3.27
522 541 8.276325 CAGTAAATAATGCGTACAGGATTTCTC 58.724 37.037 9.01 0.00 41.31 2.87
523 542 7.985184 TCAGTAAATAATGCGTACAGGATTTCT 59.015 33.333 9.01 0.00 41.31 2.52
524 543 8.138365 TCAGTAAATAATGCGTACAGGATTTC 57.862 34.615 9.01 0.00 41.31 2.17
525 544 8.500753 TTCAGTAAATAATGCGTACAGGATTT 57.499 30.769 9.01 2.90 41.31 2.17
526 545 8.559536 CATTCAGTAAATAATGCGTACAGGATT 58.440 33.333 8.80 8.80 43.51 3.01
527 546 7.715249 ACATTCAGTAAATAATGCGTACAGGAT 59.285 33.333 0.00 0.00 36.72 3.24
528 547 7.045416 ACATTCAGTAAATAATGCGTACAGGA 58.955 34.615 0.00 0.00 36.72 3.86
529 548 7.011016 TGACATTCAGTAAATAATGCGTACAGG 59.989 37.037 0.00 0.00 36.72 4.00
530 549 7.905126 TGACATTCAGTAAATAATGCGTACAG 58.095 34.615 0.00 0.00 36.72 2.74
531 550 7.835634 TGACATTCAGTAAATAATGCGTACA 57.164 32.000 0.00 0.00 36.72 2.90
534 553 9.109393 ACTAATGACATTCAGTAAATAATGCGT 57.891 29.630 3.36 0.00 36.72 5.24
535 554 9.373750 CACTAATGACATTCAGTAAATAATGCG 57.626 33.333 3.36 0.00 36.72 4.73
536 555 9.669353 CCACTAATGACATTCAGTAAATAATGC 57.331 33.333 3.36 0.00 36.72 3.56
541 560 9.905713 ATGTACCACTAATGACATTCAGTAAAT 57.094 29.630 3.36 1.28 0.00 1.40
542 561 9.161629 CATGTACCACTAATGACATTCAGTAAA 57.838 33.333 3.36 0.00 30.13 2.01
543 562 7.768582 CCATGTACCACTAATGACATTCAGTAA 59.231 37.037 3.36 0.00 30.13 2.24
544 563 7.272244 CCATGTACCACTAATGACATTCAGTA 58.728 38.462 3.36 0.37 30.13 2.74
545 564 6.115446 CCATGTACCACTAATGACATTCAGT 58.885 40.000 3.36 4.49 30.13 3.41
546 565 5.008019 GCCATGTACCACTAATGACATTCAG 59.992 44.000 3.36 3.90 30.13 3.02
584 603 0.542333 TTATTTGATCCACCCCGCGA 59.458 50.000 8.23 0.00 0.00 5.87
588 607 3.277142 ACGACTTATTTGATCCACCCC 57.723 47.619 0.00 0.00 0.00 4.95
589 608 5.019785 AGTACGACTTATTTGATCCACCC 57.980 43.478 0.00 0.00 0.00 4.61
590 609 5.048507 GGAGTACGACTTATTTGATCCACC 58.951 45.833 0.00 0.00 0.00 4.61
592 611 5.163447 CCAGGAGTACGACTTATTTGATCCA 60.163 44.000 0.00 0.00 0.00 3.41
593 612 5.290386 CCAGGAGTACGACTTATTTGATCC 58.710 45.833 0.00 0.00 0.00 3.36
595 614 4.443034 GGCCAGGAGTACGACTTATTTGAT 60.443 45.833 0.00 0.00 0.00 2.57
596 615 3.118884 GGCCAGGAGTACGACTTATTTGA 60.119 47.826 0.00 0.00 0.00 2.69
597 616 3.118738 AGGCCAGGAGTACGACTTATTTG 60.119 47.826 5.01 0.00 0.00 2.32
598 617 3.105283 AGGCCAGGAGTACGACTTATTT 58.895 45.455 5.01 0.00 0.00 1.40
599 618 2.748388 AGGCCAGGAGTACGACTTATT 58.252 47.619 5.01 0.00 0.00 1.40
607 627 2.911484 CTCATGAAAGGCCAGGAGTAC 58.089 52.381 5.01 0.00 39.37 2.73
624 644 5.270893 TGCAAGTGTCTACAGTAAACTCA 57.729 39.130 0.00 0.00 0.00 3.41
628 648 8.094548 AGTGATATTGCAAGTGTCTACAGTAAA 58.905 33.333 4.94 0.00 0.00 2.01
634 654 5.869344 TGACAGTGATATTGCAAGTGTCTAC 59.131 40.000 19.13 8.41 36.07 2.59
635 655 6.036577 TGACAGTGATATTGCAAGTGTCTA 57.963 37.500 19.13 2.62 36.07 2.59
639 659 5.761003 TGTTTGACAGTGATATTGCAAGTG 58.239 37.500 4.94 0.00 0.00 3.16
640 660 6.579666 ATGTTTGACAGTGATATTGCAAGT 57.420 33.333 4.94 0.00 0.00 3.16
641 661 7.878477 AAATGTTTGACAGTGATATTGCAAG 57.122 32.000 4.94 0.00 0.00 4.01
642 662 9.926158 ATTAAATGTTTGACAGTGATATTGCAA 57.074 25.926 0.00 0.00 0.00 4.08
714 1446 3.244284 ACCAGCTAAATGTCCGTGTGTTA 60.244 43.478 0.00 0.00 0.00 2.41
809 1546 1.548081 TTTGCCTCCATCATGGTGTG 58.452 50.000 2.79 0.00 39.03 3.82
823 1567 1.528807 GCGTGCAAGTTTTGTTTTGCC 60.529 47.619 0.59 0.00 46.91 4.52
858 1602 2.490115 TGCAAAAGTTGTCCGTCTGTTT 59.510 40.909 0.00 0.00 0.00 2.83
859 1603 2.088423 TGCAAAAGTTGTCCGTCTGTT 58.912 42.857 0.00 0.00 0.00 3.16
862 1606 1.880027 GGATGCAAAAGTTGTCCGTCT 59.120 47.619 0.00 0.00 0.00 4.18
866 1610 1.337167 GGCTGGATGCAAAAGTTGTCC 60.337 52.381 0.00 0.00 45.15 4.02
1088 1849 4.048470 GGAGGGAGGGGTGGTTGC 62.048 72.222 0.00 0.00 0.00 4.17
1114 1879 1.274728 TGAGCAGAGAGAGGAGCAAAC 59.725 52.381 0.00 0.00 0.00 2.93
1175 1945 3.134804 GCTAATCAGGGGAAGAACTAGCA 59.865 47.826 0.00 0.00 33.81 3.49
1178 1948 4.884961 AGAGCTAATCAGGGGAAGAACTA 58.115 43.478 0.00 0.00 0.00 2.24
1301 2074 3.127533 AAGCCATGCGTCTTCGGC 61.128 61.111 0.00 0.00 45.23 5.54
1315 2088 2.866762 CCTAACTCCGAAGCATACAAGC 59.133 50.000 0.00 0.00 0.00 4.01
1336 2109 1.747206 CGTTTCCTGGTCCATGGATCC 60.747 57.143 22.55 21.33 31.76 3.36
1390 2163 1.207329 AGACCCGAACCTTGCATAGAC 59.793 52.381 0.00 0.00 0.00 2.59
1394 2167 0.400213 TTCAGACCCGAACCTTGCAT 59.600 50.000 0.00 0.00 0.00 3.96
1395 2168 0.250295 CTTCAGACCCGAACCTTGCA 60.250 55.000 0.00 0.00 0.00 4.08
1406 2179 0.514691 CGAAGCAGCAACTTCAGACC 59.485 55.000 16.19 0.00 45.22 3.85
1407 2180 0.514691 CCGAAGCAGCAACTTCAGAC 59.485 55.000 16.19 0.00 45.22 3.51
1408 2181 0.603707 CCCGAAGCAGCAACTTCAGA 60.604 55.000 16.19 0.00 45.22 3.27
1409 2182 0.603707 TCCCGAAGCAGCAACTTCAG 60.604 55.000 16.19 7.13 45.22 3.02
1410 2183 0.179032 TTCCCGAAGCAGCAACTTCA 60.179 50.000 16.19 0.00 45.22 3.02
1412 2185 2.633860 CTTCCCGAAGCAGCAACTT 58.366 52.632 0.00 0.00 0.00 2.66
1466 2239 6.239289 CCAATGGTCCTTGTTTCAGTATTTGT 60.239 38.462 0.00 0.00 0.00 2.83
1471 2244 4.715534 TCCAATGGTCCTTGTTTCAGTA 57.284 40.909 0.00 0.00 0.00 2.74
1478 2251 6.933514 AATAACAAATCCAATGGTCCTTGT 57.066 33.333 0.00 4.99 0.00 3.16
1479 2252 7.835822 TGTAATAACAAATCCAATGGTCCTTG 58.164 34.615 0.00 4.36 30.91 3.61
1484 2257 7.123997 TGCATCTGTAATAACAAATCCAATGGT 59.876 33.333 0.00 0.00 34.49 3.55
1497 2270 9.830975 TTCTAGTAATTGCTGCATCTGTAATAA 57.169 29.630 1.84 0.00 0.00 1.40
1524 2297 5.014858 TGGCTAGTGCTTGTACTACTACTT 58.985 41.667 0.00 0.00 39.59 2.24
1525 2298 4.597004 TGGCTAGTGCTTGTACTACTACT 58.403 43.478 0.00 0.00 39.59 2.57
1532 2305 3.040147 TCAACTGGCTAGTGCTTGTAC 57.960 47.619 2.40 0.00 37.19 2.90
1541 2314 5.419542 TGTACTTGCTTATCAACTGGCTAG 58.580 41.667 0.00 0.00 34.71 3.42
1546 2319 5.180117 AGTGCTTGTACTTGCTTATCAACTG 59.820 40.000 10.88 0.00 0.00 3.16
1556 2329 1.734465 CTGGCTAGTGCTTGTACTTGC 59.266 52.381 14.21 14.21 44.84 4.01
1559 2332 4.759782 CAATACTGGCTAGTGCTTGTACT 58.240 43.478 13.76 0.00 37.78 2.73
1561 2334 3.531538 GCAATACTGGCTAGTGCTTGTA 58.468 45.455 13.76 0.00 42.17 2.41
1562 2335 2.359900 GCAATACTGGCTAGTGCTTGT 58.640 47.619 13.76 0.00 42.17 3.16
1566 2339 5.971763 AGATATAGCAATACTGGCTAGTGC 58.028 41.667 13.76 8.03 46.10 4.40
1567 2340 7.068103 AGCTAGATATAGCAATACTGGCTAGTG 59.932 40.741 20.82 0.00 46.10 2.74
1568 2341 7.068103 CAGCTAGATATAGCAATACTGGCTAGT 59.932 40.741 20.82 8.18 46.10 2.57
1569 2342 7.068103 ACAGCTAGATATAGCAATACTGGCTAG 59.932 40.741 20.82 0.00 46.10 3.42
1570 2343 6.892456 ACAGCTAGATATAGCAATACTGGCTA 59.108 38.462 20.82 0.00 46.86 3.93
1571 2344 5.719085 ACAGCTAGATATAGCAATACTGGCT 59.281 40.000 20.82 0.00 45.11 4.75
1586 2508 2.771943 TGAATTTCCCCGACAGCTAGAT 59.228 45.455 0.00 0.00 0.00 1.98
1587 2509 2.168521 CTGAATTTCCCCGACAGCTAGA 59.831 50.000 0.00 0.00 0.00 2.43
1632 2554 8.918202 TTAGGAAGTTGTATGACAAAATCACT 57.082 30.769 0.00 0.02 40.15 3.41
1703 2627 8.429641 AGTCGATGATACCTTTTATGTATTGGT 58.570 33.333 0.00 0.00 35.05 3.67
1709 2633 6.323996 TCTGGAGTCGATGATACCTTTTATGT 59.676 38.462 0.00 0.00 0.00 2.29
1723 2647 1.067821 GAAGCCGATTCTGGAGTCGAT 59.932 52.381 15.19 3.11 42.14 3.59
1762 2686 9.768215 ACCTCCTCCATCTTCAAAATAATAAAA 57.232 29.630 0.00 0.00 0.00 1.52
1766 2690 6.131961 CCACCTCCTCCATCTTCAAAATAAT 58.868 40.000 0.00 0.00 0.00 1.28
1984 2909 2.354729 GGGCATACCACAGCACCA 59.645 61.111 0.00 0.00 39.85 4.17
2024 2949 3.372514 GGAACTTCGCAAAAAGCCAAAAA 59.627 39.130 0.00 0.00 41.38 1.94
2029 2954 1.336755 TGAGGAACTTCGCAAAAAGCC 59.663 47.619 0.00 0.00 41.55 4.35
2030 2955 2.033424 AGTGAGGAACTTCGCAAAAAGC 59.967 45.455 0.00 0.00 41.55 3.51
2031 2956 3.312421 TCAGTGAGGAACTTCGCAAAAAG 59.688 43.478 0.00 0.00 41.55 2.27
2032 2957 3.275143 TCAGTGAGGAACTTCGCAAAAA 58.725 40.909 0.00 0.00 41.55 1.94
2182 3288 6.980051 AAACTATTGTACGAGCTAAAAGGG 57.020 37.500 0.00 0.00 0.00 3.95
2250 3367 5.710567 CCTCTACCATATGTACCTCGATTGA 59.289 44.000 1.24 0.00 0.00 2.57
2266 3383 5.249780 TGCTAATTTCCAAACCTCTACCA 57.750 39.130 0.00 0.00 0.00 3.25
2353 3470 0.889994 TGCATGATGCCACTGGAAAC 59.110 50.000 15.70 0.00 44.23 2.78
2404 3521 0.541998 TTCTTCGGAGACCTCTGCCA 60.542 55.000 0.00 0.00 34.32 4.92
2405 3522 0.827368 ATTCTTCGGAGACCTCTGCC 59.173 55.000 0.00 0.00 34.32 4.85
2406 3523 5.184096 TCATATATTCTTCGGAGACCTCTGC 59.816 44.000 0.00 0.00 34.32 4.26
2407 3524 6.825944 TCATATATTCTTCGGAGACCTCTG 57.174 41.667 0.00 0.00 34.32 3.35
2409 3526 7.222000 ACTTCATATATTCTTCGGAGACCTC 57.778 40.000 0.00 0.00 34.32 3.85
2525 3643 2.560105 GGGCCAATCAAATATCTGCCTC 59.440 50.000 4.39 0.00 37.55 4.70
2545 3664 9.896645 AGATATGTGGACAGCTATTAATAATGG 57.103 33.333 10.53 0.00 0.00 3.16
2666 3785 0.324943 AAGAAGCCACGCACCTGTAT 59.675 50.000 0.00 0.00 0.00 2.29
2927 4047 3.170717 CCCCCAATAGACGCTTAGGATA 58.829 50.000 0.00 0.00 0.00 2.59
2938 4058 2.344592 AGTGTTGTCACCCCCAATAGA 58.655 47.619 0.00 0.00 44.83 1.98
3030 4150 8.008513 TGAGAACCTGTCCATATAGAAACTAC 57.991 38.462 0.00 0.00 0.00 2.73
3256 4377 8.950961 GGAAAACGTAAAAATGAACAGAGTAAC 58.049 33.333 0.00 0.00 0.00 2.50
3275 4397 6.310224 ACAACAAAGTTCAATGAAGGAAAACG 59.690 34.615 0.00 0.00 0.00 3.60
3408 4537 5.063944 GCGTACAAGATATGGCATTAGATGG 59.936 44.000 4.78 0.00 0.00 3.51
3481 4611 3.641436 TCACTAAGCCACTGTTCAGAGAA 59.359 43.478 6.83 0.00 0.00 2.87
3543 4768 0.382158 CTAGCTCTTGCGATCGGACA 59.618 55.000 18.30 4.07 45.42 4.02
3578 4803 9.500785 TGTGAGTTCAGATTAATGATGTGTTTA 57.499 29.630 0.00 0.00 31.26 2.01
3614 4839 3.870538 TGCCAATCTATTGCAGATCCT 57.129 42.857 0.00 0.00 43.56 3.24
3633 4858 6.382869 TCTTTCTTTCTCCTTGCTTCTTTG 57.617 37.500 0.00 0.00 0.00 2.77
3660 4885 4.232122 TCAGTCCTCCCTAACTTATCTCCA 59.768 45.833 0.00 0.00 0.00 3.86
3754 4980 8.945481 ATCAATTGAGTTTGTCATGTTTGAAA 57.055 26.923 14.54 0.00 34.85 2.69
3767 4993 4.192317 GAGGGACGCTATCAATTGAGTTT 58.808 43.478 14.54 0.00 0.00 2.66
3781 5007 0.523072 TGTTACTACACGAGGGACGC 59.477 55.000 0.00 0.00 46.94 5.19
3790 5016 3.026630 TGAGCTGCACTGTTACTACAC 57.973 47.619 1.02 0.00 0.00 2.90
3793 5019 4.066646 TGTTTGAGCTGCACTGTTACTA 57.933 40.909 1.02 0.00 0.00 1.82
3798 5024 2.579873 AGAATGTTTGAGCTGCACTGT 58.420 42.857 1.02 0.00 0.00 3.55
3846 5072 0.537188 AACCAGTATGCCGGACTCTG 59.463 55.000 5.05 7.52 31.97 3.35
3889 5115 5.724328 TCGTCAGATCTTATTCAGCTTTGT 58.276 37.500 0.00 0.00 0.00 2.83
4024 5250 1.789464 GTCAACACTGTGAAGCTCTCG 59.211 52.381 15.86 0.00 0.00 4.04
4101 5327 5.806366 ATGCGGGTAAAAGTATTGTGTAC 57.194 39.130 0.00 0.00 0.00 2.90
4122 5348 7.125963 GCACTAGAAATTAGTATAGCCCCCTAT 59.874 40.741 0.00 0.00 37.93 2.57
4228 5470 2.091541 ACAACACTGGTCAAACACTGG 58.908 47.619 0.00 0.00 0.00 4.00
4229 5471 2.487762 ACACAACACTGGTCAAACACTG 59.512 45.455 0.00 0.00 0.00 3.66
4230 5472 2.790433 ACACAACACTGGTCAAACACT 58.210 42.857 0.00 0.00 0.00 3.55
4231 5473 3.241701 CAACACAACACTGGTCAAACAC 58.758 45.455 0.00 0.00 0.00 3.32
4232 5474 2.887783 ACAACACAACACTGGTCAAACA 59.112 40.909 0.00 0.00 0.00 2.83
4233 5475 3.569250 ACAACACAACACTGGTCAAAC 57.431 42.857 0.00 0.00 0.00 2.93
4234 5476 4.580868 TCTACAACACAACACTGGTCAAA 58.419 39.130 0.00 0.00 0.00 2.69
4235 5477 4.188462 CTCTACAACACAACACTGGTCAA 58.812 43.478 0.00 0.00 0.00 3.18
4236 5478 3.431626 CCTCTACAACACAACACTGGTCA 60.432 47.826 0.00 0.00 0.00 4.02
4237 5479 3.131396 CCTCTACAACACAACACTGGTC 58.869 50.000 0.00 0.00 0.00 4.02
4238 5480 2.769663 TCCTCTACAACACAACACTGGT 59.230 45.455 0.00 0.00 0.00 4.00
4239 5481 3.469008 TCCTCTACAACACAACACTGG 57.531 47.619 0.00 0.00 0.00 4.00
4240 5482 3.560068 GGTTCCTCTACAACACAACACTG 59.440 47.826 0.00 0.00 0.00 3.66
4241 5483 3.454812 AGGTTCCTCTACAACACAACACT 59.545 43.478 0.00 0.00 0.00 3.55
4245 5487 4.448210 GTCAAGGTTCCTCTACAACACAA 58.552 43.478 0.00 0.00 0.00 3.33
4263 5505 4.998033 TCGCATTAATACAACAGTGGTCAA 59.002 37.500 0.00 0.00 0.00 3.18
4291 5664 6.748132 TGAATTTGGATTGTCAGAAAGGAAC 58.252 36.000 0.00 0.00 0.00 3.62
4304 5677 5.404466 TTCGCCTGAAATGAATTTGGATT 57.596 34.783 0.00 0.00 0.00 3.01
4306 5679 3.193267 CCTTCGCCTGAAATGAATTTGGA 59.807 43.478 0.00 0.00 32.66 3.53
4327 5700 2.203181 GCTGATCCTGCTCCTGCC 60.203 66.667 0.00 0.00 38.71 4.85
4342 5715 1.693606 CAAACCATGGAAAGGGTTGCT 59.306 47.619 21.47 0.00 45.87 3.91
4348 5721 2.171003 GGGAGACAAACCATGGAAAGG 58.829 52.381 21.47 7.33 0.00 3.11
4361 5734 1.913419 GGATGTAAGTTGGGGGAGACA 59.087 52.381 0.00 0.00 0.00 3.41
4368 5741 2.242196 ACTGATGGGGATGTAAGTTGGG 59.758 50.000 0.00 0.00 0.00 4.12
4369 5742 3.054434 TGACTGATGGGGATGTAAGTTGG 60.054 47.826 0.00 0.00 0.00 3.77
4370 5743 4.220693 TGACTGATGGGGATGTAAGTTG 57.779 45.455 0.00 0.00 0.00 3.16
4372 5745 3.054361 GGTTGACTGATGGGGATGTAAGT 60.054 47.826 0.00 0.00 0.00 2.24
4375 5748 2.845659 AGGTTGACTGATGGGGATGTA 58.154 47.619 0.00 0.00 0.00 2.29
4388 5761 2.488153 GGAGCATACAAACCAGGTTGAC 59.512 50.000 5.30 0.00 32.59 3.18
4389 5762 2.790433 GGAGCATACAAACCAGGTTGA 58.210 47.619 5.30 0.00 32.59 3.18
4390 5763 1.468520 CGGAGCATACAAACCAGGTTG 59.531 52.381 5.30 0.00 34.52 3.77
4391 5764 1.349688 TCGGAGCATACAAACCAGGTT 59.650 47.619 0.00 0.00 0.00 3.50
4392 5765 0.981183 TCGGAGCATACAAACCAGGT 59.019 50.000 0.00 0.00 0.00 4.00
4393 5766 1.369625 GTCGGAGCATACAAACCAGG 58.630 55.000 0.00 0.00 0.00 4.45
4394 5767 0.999406 CGTCGGAGCATACAAACCAG 59.001 55.000 0.00 0.00 0.00 4.00
4396 5769 1.593006 CATCGTCGGAGCATACAAACC 59.407 52.381 0.00 0.00 0.00 3.27
4397 5770 1.593006 CCATCGTCGGAGCATACAAAC 59.407 52.381 0.00 0.00 0.00 2.93
4399 5772 0.529773 GCCATCGTCGGAGCATACAA 60.530 55.000 0.00 0.00 0.00 2.41
4402 5779 1.106944 TCAGCCATCGTCGGAGCATA 61.107 55.000 0.00 0.00 0.00 3.14
4405 5782 1.880340 CTTCAGCCATCGTCGGAGC 60.880 63.158 0.00 0.00 0.00 4.70
4406 5783 1.880340 GCTTCAGCCATCGTCGGAG 60.880 63.158 0.00 0.00 34.31 4.63
4409 5786 1.291184 TGTTGCTTCAGCCATCGTCG 61.291 55.000 0.00 0.00 41.18 5.12
4410 5787 0.166814 GTGTTGCTTCAGCCATCGTC 59.833 55.000 0.00 0.00 41.18 4.20
4412 5789 1.725641 TAGTGTTGCTTCAGCCATCG 58.274 50.000 0.00 0.00 41.18 3.84
4418 5795 5.006386 AGGGAAGATTTAGTGTTGCTTCAG 58.994 41.667 0.00 0.00 37.33 3.02
4420 5797 5.966742 AAGGGAAGATTTAGTGTTGCTTC 57.033 39.130 0.00 0.00 35.44 3.86
4421 5798 6.731292 AAAAGGGAAGATTTAGTGTTGCTT 57.269 33.333 0.00 0.00 0.00 3.91
4446 5827 4.617298 GCTGCGTAGGCCTGAAATTTAAAA 60.617 41.667 17.99 0.00 38.85 1.52
4447 5828 3.119637 GCTGCGTAGGCCTGAAATTTAAA 60.120 43.478 17.99 0.00 38.85 1.52
4448 5829 2.422127 GCTGCGTAGGCCTGAAATTTAA 59.578 45.455 17.99 0.00 38.85 1.52
4449 5830 2.014128 GCTGCGTAGGCCTGAAATTTA 58.986 47.619 17.99 0.00 38.85 1.40
4450 5831 0.811281 GCTGCGTAGGCCTGAAATTT 59.189 50.000 17.99 0.00 38.85 1.82
4451 5832 0.322456 TGCTGCGTAGGCCTGAAATT 60.322 50.000 17.99 0.00 38.85 1.82
4452 5833 0.745845 CTGCTGCGTAGGCCTGAAAT 60.746 55.000 17.99 0.00 38.85 2.17
4453 5834 1.375908 CTGCTGCGTAGGCCTGAAA 60.376 57.895 17.99 0.00 38.85 2.69
4454 5835 2.265739 CTGCTGCGTAGGCCTGAA 59.734 61.111 17.99 0.00 38.85 3.02
4553 5934 6.157645 AGGGATGAGCTGAGAGAAAGAAATAA 59.842 38.462 0.00 0.00 0.00 1.40
4555 5936 4.474287 AGGGATGAGCTGAGAGAAAGAAAT 59.526 41.667 0.00 0.00 0.00 2.17
4558 5939 3.113191 AGGGATGAGCTGAGAGAAAGA 57.887 47.619 0.00 0.00 0.00 2.52
4559 5940 4.740334 GCTTAGGGATGAGCTGAGAGAAAG 60.740 50.000 0.00 0.00 36.01 2.62
4561 5942 2.697751 GCTTAGGGATGAGCTGAGAGAA 59.302 50.000 0.00 0.00 36.01 2.87
4565 5946 2.996249 TTGCTTAGGGATGAGCTGAG 57.004 50.000 0.00 0.00 39.60 3.35
4566 5947 2.773661 TGATTGCTTAGGGATGAGCTGA 59.226 45.455 0.00 0.00 39.60 4.26
4568 5949 4.396522 GAATGATTGCTTAGGGATGAGCT 58.603 43.478 0.00 0.00 39.60 4.09
4569 5950 3.505293 GGAATGATTGCTTAGGGATGAGC 59.495 47.826 0.00 0.00 39.33 4.26
4571 5952 5.513788 GCTAGGAATGATTGCTTAGGGATGA 60.514 44.000 4.10 0.00 31.99 2.92
4572 5953 4.699257 GCTAGGAATGATTGCTTAGGGATG 59.301 45.833 4.10 0.00 31.99 3.51
4573 5954 4.263683 GGCTAGGAATGATTGCTTAGGGAT 60.264 45.833 4.10 0.00 31.99 3.85
4576 5957 3.070018 CGGCTAGGAATGATTGCTTAGG 58.930 50.000 4.10 0.00 31.99 2.69
4577 5958 3.743396 GTCGGCTAGGAATGATTGCTTAG 59.257 47.826 4.10 2.21 31.99 2.18
4578 5959 3.494398 GGTCGGCTAGGAATGATTGCTTA 60.494 47.826 4.10 0.00 31.99 3.09
4580 5961 1.202698 GGTCGGCTAGGAATGATTGCT 60.203 52.381 4.26 4.26 34.84 3.91
4581 5962 1.230324 GGTCGGCTAGGAATGATTGC 58.770 55.000 0.00 0.00 0.00 3.56
4586 5967 0.174845 TTGTCGGTCGGCTAGGAATG 59.825 55.000 0.00 0.00 0.00 2.67
4588 5969 1.888018 CTTGTCGGTCGGCTAGGAA 59.112 57.895 0.00 0.00 0.00 3.36
4589 5970 2.707849 GCTTGTCGGTCGGCTAGGA 61.708 63.158 8.27 0.00 0.00 2.94
4593 5974 0.889186 AAAATGCTTGTCGGTCGGCT 60.889 50.000 0.00 0.00 0.00 5.52
4594 5975 0.454452 GAAAATGCTTGTCGGTCGGC 60.454 55.000 0.00 0.00 0.00 5.54
4597 5978 3.896648 TTCAGAAAATGCTTGTCGGTC 57.103 42.857 0.00 0.00 0.00 4.79
4599 5980 3.419915 CGATTCAGAAAATGCTTGTCGG 58.580 45.455 0.00 0.00 0.00 4.79
4601 5982 3.825308 TGCGATTCAGAAAATGCTTGTC 58.175 40.909 0.00 0.00 0.00 3.18
4602 5983 3.921119 TGCGATTCAGAAAATGCTTGT 57.079 38.095 0.00 0.00 0.00 3.16
4604 5985 6.161381 AGATTTTGCGATTCAGAAAATGCTT 58.839 32.000 7.14 0.00 31.10 3.91
4605 5986 5.717119 AGATTTTGCGATTCAGAAAATGCT 58.283 33.333 7.14 3.62 31.10 3.79
4606 5987 6.128742 ACAAGATTTTGCGATTCAGAAAATGC 60.129 34.615 7.14 0.00 37.85 3.56
4607 5988 7.342318 ACAAGATTTTGCGATTCAGAAAATG 57.658 32.000 7.14 0.39 37.85 2.32
4608 5989 7.869429 AGAACAAGATTTTGCGATTCAGAAAAT 59.131 29.630 0.00 0.00 37.85 1.82
4609 5990 7.202526 AGAACAAGATTTTGCGATTCAGAAAA 58.797 30.769 0.00 0.00 37.85 2.29
4617 5998 5.346822 GCAATGAAGAACAAGATTTTGCGAT 59.653 36.000 0.00 0.00 37.85 4.58
4624 6005 4.516698 AGACACGCAATGAAGAACAAGATT 59.483 37.500 0.00 0.00 0.00 2.40
4625 6006 4.067896 AGACACGCAATGAAGAACAAGAT 58.932 39.130 0.00 0.00 0.00 2.40
4626 6007 3.466836 AGACACGCAATGAAGAACAAGA 58.533 40.909 0.00 0.00 0.00 3.02
4628 6009 3.625313 TCAAGACACGCAATGAAGAACAA 59.375 39.130 0.00 0.00 0.00 2.83
4634 6015 2.290367 CACCTTCAAGACACGCAATGAA 59.710 45.455 0.00 0.00 0.00 2.57
4635 6016 1.872952 CACCTTCAAGACACGCAATGA 59.127 47.619 0.00 0.00 0.00 2.57
4636 6017 1.872952 TCACCTTCAAGACACGCAATG 59.127 47.619 0.00 0.00 0.00 2.82
4637 6018 1.873591 GTCACCTTCAAGACACGCAAT 59.126 47.619 0.00 0.00 34.93 3.56
4638 6019 1.295792 GTCACCTTCAAGACACGCAA 58.704 50.000 0.00 0.00 34.93 4.85
4639 6020 0.874175 CGTCACCTTCAAGACACGCA 60.874 55.000 0.00 0.00 34.48 5.24
4640 6021 1.557443 CCGTCACCTTCAAGACACGC 61.557 60.000 0.00 0.00 34.48 5.34
4641 6022 0.031585 TCCGTCACCTTCAAGACACG 59.968 55.000 0.00 0.00 34.48 4.49
4642 6023 1.784525 CTCCGTCACCTTCAAGACAC 58.215 55.000 0.00 0.00 34.48 3.67
4643 6024 0.033504 GCTCCGTCACCTTCAAGACA 59.966 55.000 0.00 0.00 34.48 3.41
4647 6028 1.301716 GCAGCTCCGTCACCTTCAA 60.302 57.895 0.00 0.00 0.00 2.69
4760 6141 4.466370 TCCCTAGGCTATGTATGTATGTGC 59.534 45.833 2.05 0.00 0.00 4.57
4761 6142 6.351371 CCTTCCCTAGGCTATGTATGTATGTG 60.351 46.154 2.05 0.00 37.17 3.21
4762 6143 5.721960 CCTTCCCTAGGCTATGTATGTATGT 59.278 44.000 2.05 0.00 37.17 2.29
4795 6185 4.173036 ACATTAAATTGGGCGACACAAG 57.827 40.909 0.00 0.00 0.00 3.16
4820 6210 3.716006 CTGCACCACGGCGACAAG 61.716 66.667 16.62 1.37 36.28 3.16
4895 6319 2.293122 CCATCTTCACTTGTTGGCGAAA 59.707 45.455 0.00 0.00 0.00 3.46
4930 6360 1.084370 AAAGATACGGAGCTGCGTGC 61.084 55.000 38.74 29.44 43.29 5.34
4931 6361 0.924090 GAAAGATACGGAGCTGCGTG 59.076 55.000 38.74 11.16 0.00 5.34
4933 6363 1.812214 GCGAAAGATACGGAGCTGCG 61.812 60.000 26.95 26.95 0.00 5.18
4934 6364 1.491505 GGCGAAAGATACGGAGCTGC 61.492 60.000 0.00 0.00 0.00 5.25
4935 6365 1.209275 CGGCGAAAGATACGGAGCTG 61.209 60.000 0.00 0.00 0.00 4.24
4936 6366 1.065928 CGGCGAAAGATACGGAGCT 59.934 57.895 0.00 0.00 0.00 4.09
4937 6367 0.526954 TTCGGCGAAAGATACGGAGC 60.527 55.000 21.53 0.00 0.00 4.70
4955 6387 1.228956 TGCTGGCCTTGGAGCATTT 60.229 52.632 11.26 0.00 40.30 2.32
4960 6392 2.425143 TTTCTATGCTGGCCTTGGAG 57.575 50.000 3.32 0.00 0.00 3.86
4961 6393 2.511218 AGATTTCTATGCTGGCCTTGGA 59.489 45.455 3.32 0.00 0.00 3.53
4962 6394 2.621998 CAGATTTCTATGCTGGCCTTGG 59.378 50.000 3.32 0.00 0.00 3.61
4963 6395 3.548770 TCAGATTTCTATGCTGGCCTTG 58.451 45.455 3.32 0.00 0.00 3.61
4964 6396 3.457380 TCTCAGATTTCTATGCTGGCCTT 59.543 43.478 3.32 0.00 0.00 4.35
4965 6397 3.044156 TCTCAGATTTCTATGCTGGCCT 58.956 45.455 3.32 0.00 0.00 5.19
4966 6398 3.482156 TCTCAGATTTCTATGCTGGCC 57.518 47.619 0.00 0.00 0.00 5.36
4967 6399 3.188873 GCATCTCAGATTTCTATGCTGGC 59.811 47.826 6.57 0.00 39.80 4.85
5025 6470 0.250234 CATCACATCACACGGGGACT 59.750 55.000 0.00 0.00 0.00 3.85
5029 6474 4.191544 AGATTTACATCACATCACACGGG 58.808 43.478 0.00 0.00 0.00 5.28
5086 6536 9.278978 TCGTATATACCGGTACAAAATACTGTA 57.721 33.333 18.55 1.25 0.00 2.74
5087 6537 8.165239 TCGTATATACCGGTACAAAATACTGT 57.835 34.615 18.55 0.00 0.00 3.55
5088 6538 9.069078 CATCGTATATACCGGTACAAAATACTG 57.931 37.037 18.55 15.92 0.00 2.74
5089 6539 7.756722 GCATCGTATATACCGGTACAAAATACT 59.243 37.037 18.55 0.19 0.00 2.12
5090 6540 7.253420 CGCATCGTATATACCGGTACAAAATAC 60.253 40.741 18.55 18.87 0.00 1.89
5091 6541 6.746822 CGCATCGTATATACCGGTACAAAATA 59.253 38.462 18.55 6.45 0.00 1.40
5092 6542 5.574055 CGCATCGTATATACCGGTACAAAAT 59.426 40.000 18.55 10.75 0.00 1.82
5095 6545 3.119884 CCGCATCGTATATACCGGTACAA 60.120 47.826 18.55 8.85 0.00 2.41
5096 6546 2.419673 CCGCATCGTATATACCGGTACA 59.580 50.000 18.55 5.47 0.00 2.90
5097 6547 2.677836 TCCGCATCGTATATACCGGTAC 59.322 50.000 18.55 5.70 37.17 3.34
5146 6596 9.987272 TCAATCATCAGATCTGTCGTATTTATT 57.013 29.630 21.92 7.79 31.90 1.40
5148 6598 9.987272 AATCAATCATCAGATCTGTCGTATTTA 57.013 29.630 21.92 9.87 31.90 1.40
5193 7550 8.012809 CCAACTTGAACTTTTGTTTTGTTTACC 58.987 33.333 0.00 0.00 43.66 2.85
5194 7551 7.532546 GCCAACTTGAACTTTTGTTTTGTTTAC 59.467 33.333 0.00 0.00 43.66 2.01
5195 7552 7.442666 AGCCAACTTGAACTTTTGTTTTGTTTA 59.557 29.630 0.00 0.00 43.66 2.01
5201 7558 4.173256 CGAGCCAACTTGAACTTTTGTTT 58.827 39.130 0.00 0.00 43.66 2.83
5238 7597 4.396166 CGGGTTAATCAGCAAGAGAACAAT 59.604 41.667 0.00 0.00 31.07 2.71
5488 7860 1.024579 CCGCTGGTTCGCCTATTGTT 61.025 55.000 0.00 0.00 38.36 2.83
5489 7861 1.449601 CCGCTGGTTCGCCTATTGT 60.450 57.895 0.00 0.00 38.36 2.71
5490 7862 2.823829 GCCGCTGGTTCGCCTATTG 61.824 63.158 0.00 0.00 38.36 1.90
5491 7863 2.513897 GCCGCTGGTTCGCCTATT 60.514 61.111 0.00 0.00 38.36 1.73
5492 7864 4.891727 CGCCGCTGGTTCGCCTAT 62.892 66.667 0.00 0.00 38.36 2.57
5567 7957 2.433664 GTTCGCTGTACGGGTGGG 60.434 66.667 3.34 0.00 43.89 4.61
5568 7958 2.433664 GGTTCGCTGTACGGGTGG 60.434 66.667 3.34 0.00 43.89 4.61
5569 7959 2.433664 GGGTTCGCTGTACGGGTG 60.434 66.667 3.34 0.00 43.89 4.61
5587 7977 3.844090 GGAGAGCGAGAGGGGTGC 61.844 72.222 0.00 0.00 0.00 5.01
5610 8000 1.954382 TCGAATCGAATCGGACCAGAT 59.046 47.619 21.78 0.00 42.92 2.90
5611 8001 1.385528 TCGAATCGAATCGGACCAGA 58.614 50.000 21.78 0.00 42.92 3.86
5612 8002 2.423926 ATCGAATCGAATCGGACCAG 57.576 50.000 21.78 0.00 42.92 4.00
5613 8003 2.739292 GAATCGAATCGAATCGGACCA 58.261 47.619 21.78 3.78 42.92 4.02
5623 8013 0.978385 GCCGAGATCGAATCGAATCG 59.022 55.000 26.08 26.08 43.51 3.34
5624 8014 2.339728 AGCCGAGATCGAATCGAATC 57.660 50.000 21.00 10.12 42.76 2.52
5762 8165 2.442272 ATCAGGGAGACGGACGGG 60.442 66.667 0.00 0.00 0.00 5.28
5765 8168 0.457851 CACAGATCAGGGAGACGGAC 59.542 60.000 0.00 0.00 0.00 4.79
5766 8169 1.323271 GCACAGATCAGGGAGACGGA 61.323 60.000 0.00 0.00 0.00 4.69
5767 8170 1.142748 GCACAGATCAGGGAGACGG 59.857 63.158 0.00 0.00 0.00 4.79
5769 8172 0.247736 AACGCACAGATCAGGGAGAC 59.752 55.000 0.00 0.00 0.00 3.36
5770 8173 0.247460 CAACGCACAGATCAGGGAGA 59.753 55.000 0.00 0.00 0.00 3.71
5776 8179 0.602638 GGACCACAACGCACAGATCA 60.603 55.000 0.00 0.00 0.00 2.92
5802 8205 1.604755 CTTACCGCTAGCAGATCGAGT 59.395 52.381 16.45 2.57 0.00 4.18
5812 8215 2.504519 GGCACCCCTTACCGCTAG 59.495 66.667 0.00 0.00 0.00 3.42
5833 8236 3.762992 CACGCACGCACGAACGAT 61.763 61.111 14.23 0.00 36.70 3.73
5859 8262 3.953444 GAAAAAGCCGAGCCGCTGC 62.953 63.158 0.00 0.00 39.64 5.25
5860 8263 2.176792 GAAAAAGCCGAGCCGCTG 59.823 61.111 0.00 0.00 39.64 5.18
5861 8264 3.423154 CGAAAAAGCCGAGCCGCT 61.423 61.111 0.00 0.00 42.22 5.52
5868 8271 2.487967 CGCGCAATCGAAAAAGCCG 61.488 57.895 8.75 0.00 38.10 5.52
5872 8275 1.154562 CGGACGCGCAATCGAAAAA 60.155 52.632 5.73 0.00 38.10 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.