Multiple sequence alignment - TraesCS5D01G018600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G018600 chr5D 100.000 4864 0 0 420 5283 10896718 10901581 0.000000e+00 8983.0
1 TraesCS5D01G018600 chr5D 83.599 439 40 10 3894 4321 11019932 11020349 2.990000e-102 383.0
2 TraesCS5D01G018600 chr5D 100.000 122 0 0 1 122 10896299 10896420 5.320000e-55 226.0
3 TraesCS5D01G018600 chr5D 100.000 28 0 0 4876 4903 10901124 10901151 1.000000e-02 52.8
4 TraesCS5D01G018600 chr5D 100.000 28 0 0 4826 4853 10901174 10901201 1.000000e-02 52.8
5 TraesCS5D01G018600 chr5A 93.677 2151 117 8 1652 3796 9323965 9326102 0.000000e+00 3201.0
6 TraesCS5D01G018600 chr5A 89.884 1295 74 21 3798 5052 9325918 9327195 0.000000e+00 1613.0
7 TraesCS5D01G018600 chr5A 90.948 707 30 13 917 1590 9323259 9323964 0.000000e+00 920.0
8 TraesCS5D01G018600 chr5A 97.209 215 6 0 5069 5283 9330064 9330278 1.080000e-96 364.0
9 TraesCS5D01G018600 chr5A 93.363 226 8 4 618 837 9322716 9322940 1.420000e-85 327.0
10 TraesCS5D01G018600 chr5A 83.938 193 16 6 440 632 9317643 9317820 2.530000e-38 171.0
11 TraesCS5D01G018600 chr5B 93.080 1792 105 10 2017 3794 11455711 11457497 0.000000e+00 2604.0
12 TraesCS5D01G018600 chr5B 86.609 575 37 17 4223 4786 11457880 11458425 2.720000e-167 599.0
13 TraesCS5D01G018600 chr5B 90.728 453 22 8 990 1422 11454818 11455270 2.120000e-163 586.0
14 TraesCS5D01G018600 chr5B 88.479 434 47 2 3811 4242 11457329 11457761 6.060000e-144 521.0
15 TraesCS5D01G018600 chr5B 94.785 326 11 2 1652 1977 11455399 11455718 2.200000e-138 503.0
16 TraesCS5D01G018600 chr5B 97.674 172 4 0 4977 5148 11458422 11458593 4.000000e-76 296.0
17 TraesCS5D01G018600 chr5B 91.257 183 16 0 440 622 11454202 11454384 3.160000e-62 250.0
18 TraesCS5D01G018600 chr5B 92.647 136 10 0 1455 1590 11455263 11455398 4.170000e-46 196.0
19 TraesCS5D01G018600 chr4B 81.858 1367 169 22 2311 3632 446856414 446855082 0.000000e+00 1077.0
20 TraesCS5D01G018600 chr4A 83.638 1149 143 13 2311 3427 103387979 103389114 0.000000e+00 1038.0
21 TraesCS5D01G018600 chr4D 83.624 1148 143 13 2311 3426 361598456 361597322 0.000000e+00 1037.0
22 TraesCS5D01G018600 chr7B 98.571 70 0 1 1582 1651 531650710 531650778 7.180000e-24 122.0
23 TraesCS5D01G018600 chr7B 89.247 93 7 3 1584 1675 123793969 123793879 4.320000e-21 113.0
24 TraesCS5D01G018600 chr7B 89.130 92 6 3 1590 1677 318381845 318381754 1.560000e-20 111.0
25 TraesCS5D01G018600 chr6A 97.222 72 1 1 1580 1651 58355384 58355454 2.580000e-23 121.0
26 TraesCS5D01G018600 chr7D 91.111 90 5 2 1586 1672 615482014 615482103 9.290000e-23 119.0
27 TraesCS5D01G018600 chr2B 95.946 74 2 1 1578 1651 259022403 259022475 9.290000e-23 119.0
28 TraesCS5D01G018600 chr7A 91.860 86 3 4 1569 1651 93338950 93338866 3.340000e-22 117.0
29 TraesCS5D01G018600 chr3B 90.217 92 5 3 1590 1677 550636607 550636698 3.340000e-22 117.0
30 TraesCS5D01G018600 chr6B 90.217 92 4 3 1591 1677 86434073 86433982 1.200000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G018600 chr5D 10896299 10901581 5282 False 2328.650 8983 100.000000 1 5283 4 chr5D.!!$F2 5282
1 TraesCS5D01G018600 chr5A 9322716 9330278 7562 False 1285.000 3201 93.016200 618 5283 5 chr5A.!!$F2 4665
2 TraesCS5D01G018600 chr5B 11454202 11458593 4391 False 694.375 2604 91.907375 440 5148 8 chr5B.!!$F1 4708
3 TraesCS5D01G018600 chr4B 446855082 446856414 1332 True 1077.000 1077 81.858000 2311 3632 1 chr4B.!!$R1 1321
4 TraesCS5D01G018600 chr4A 103387979 103389114 1135 False 1038.000 1038 83.638000 2311 3427 1 chr4A.!!$F1 1116
5 TraesCS5D01G018600 chr4D 361597322 361598456 1134 True 1037.000 1037 83.624000 2311 3426 1 chr4D.!!$R1 1115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 882 0.031616 AGAACCAACTTTTGCCCCCA 60.032 50.0 0.0 0.0 0.00 4.96 F
939 1185 0.598680 CCCGCACCAGATTCGATCTC 60.599 60.0 0.0 0.0 37.58 2.75 F
1647 1925 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.0 0.0 0.0 0.00 4.02 F
1977 2255 0.874390 AAACTGTGTGGTGCTATGCG 59.126 50.0 0.0 0.0 0.00 4.73 F
3287 3608 0.529378 CAAGGGACAAGCAAGATGCC 59.471 55.0 0.0 0.0 46.52 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 2241 0.179073 ATCCTCGCATAGCACCACAC 60.179 55.000 0.0 0.00 0.00 3.82 R
2459 2744 2.070783 GCATTTCCACGGTTAGTCGAA 58.929 47.619 0.0 0.00 0.00 3.71 R
2996 3296 0.034476 TCTTCCAGTGAGCAGCAGTG 59.966 55.000 0.0 7.28 45.62 3.66 R
3308 3629 0.240945 CACTGAACCCAAACGATGCC 59.759 55.000 0.0 0.00 0.00 4.40 R
4979 5485 0.178873 AGCTGGAGGTTTCAGGGGTA 60.179 55.000 0.0 0.00 33.16 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.689612 ACCATATCAGAGCATTACCGTT 57.310 40.909 0.00 0.00 0.00 4.44
25 26 4.380531 ACCATATCAGAGCATTACCGTTG 58.619 43.478 0.00 0.00 0.00 4.10
26 27 4.100963 ACCATATCAGAGCATTACCGTTGA 59.899 41.667 0.00 0.00 0.00 3.18
27 28 4.449068 CCATATCAGAGCATTACCGTTGAC 59.551 45.833 0.00 0.00 0.00 3.18
28 29 3.610040 ATCAGAGCATTACCGTTGACA 57.390 42.857 0.00 0.00 0.00 3.58
29 30 3.394674 TCAGAGCATTACCGTTGACAA 57.605 42.857 0.00 0.00 0.00 3.18
30 31 3.734463 TCAGAGCATTACCGTTGACAAA 58.266 40.909 0.00 0.00 0.00 2.83
31 32 3.496884 TCAGAGCATTACCGTTGACAAAC 59.503 43.478 0.00 0.00 0.00 2.93
32 33 3.498397 CAGAGCATTACCGTTGACAAACT 59.502 43.478 0.00 0.00 33.87 2.66
33 34 4.688879 CAGAGCATTACCGTTGACAAACTA 59.311 41.667 0.00 0.00 33.87 2.24
34 35 4.929808 AGAGCATTACCGTTGACAAACTAG 59.070 41.667 0.00 0.00 33.87 2.57
35 36 4.638304 AGCATTACCGTTGACAAACTAGT 58.362 39.130 0.00 0.00 33.87 2.57
36 37 4.689345 AGCATTACCGTTGACAAACTAGTC 59.311 41.667 0.00 0.00 38.99 2.59
37 38 4.449743 GCATTACCGTTGACAAACTAGTCA 59.550 41.667 0.00 0.00 46.12 3.41
49 50 8.902540 TGACAAACTAGTCACAAACTCATAAT 57.097 30.769 0.00 0.00 43.18 1.28
50 51 9.337396 TGACAAACTAGTCACAAACTCATAATT 57.663 29.630 0.00 0.00 43.18 1.40
51 52 9.599322 GACAAACTAGTCACAAACTCATAATTG 57.401 33.333 0.00 0.00 39.55 2.32
52 53 8.567948 ACAAACTAGTCACAAACTCATAATTGG 58.432 33.333 0.00 0.00 39.55 3.16
53 54 6.743575 ACTAGTCACAAACTCATAATTGGC 57.256 37.500 0.00 0.00 39.55 4.52
54 55 6.237901 ACTAGTCACAAACTCATAATTGGCA 58.762 36.000 0.00 0.00 39.55 4.92
55 56 5.376854 AGTCACAAACTCATAATTGGCAC 57.623 39.130 0.00 0.00 30.02 5.01
56 57 4.218417 AGTCACAAACTCATAATTGGCACC 59.782 41.667 0.00 0.00 30.02 5.01
57 58 4.022416 GTCACAAACTCATAATTGGCACCA 60.022 41.667 0.00 0.00 0.00 4.17
58 59 4.218200 TCACAAACTCATAATTGGCACCAG 59.782 41.667 0.00 0.00 0.00 4.00
59 60 4.218200 CACAAACTCATAATTGGCACCAGA 59.782 41.667 0.00 0.00 0.00 3.86
60 61 5.018809 ACAAACTCATAATTGGCACCAGAT 58.981 37.500 0.00 0.00 0.00 2.90
61 62 5.126061 ACAAACTCATAATTGGCACCAGATC 59.874 40.000 0.00 0.00 0.00 2.75
62 63 3.825328 ACTCATAATTGGCACCAGATCC 58.175 45.455 0.00 0.00 0.00 3.36
63 64 3.461085 ACTCATAATTGGCACCAGATCCT 59.539 43.478 0.00 0.00 0.00 3.24
64 65 3.819337 CTCATAATTGGCACCAGATCCTG 59.181 47.826 0.00 0.00 0.00 3.86
65 66 3.459227 TCATAATTGGCACCAGATCCTGA 59.541 43.478 0.00 0.00 32.44 3.86
66 67 2.905415 AATTGGCACCAGATCCTGAA 57.095 45.000 0.00 0.00 32.44 3.02
67 68 3.393426 AATTGGCACCAGATCCTGAAT 57.607 42.857 0.00 0.00 32.44 2.57
68 69 2.133281 TTGGCACCAGATCCTGAATG 57.867 50.000 0.00 0.00 32.44 2.67
69 70 0.994247 TGGCACCAGATCCTGAATGT 59.006 50.000 0.00 0.00 32.44 2.71
70 71 1.340308 TGGCACCAGATCCTGAATGTG 60.340 52.381 0.00 0.00 32.44 3.21
71 72 0.737219 GCACCAGATCCTGAATGTGC 59.263 55.000 9.72 9.72 38.90 4.57
72 73 1.386533 CACCAGATCCTGAATGTGCC 58.613 55.000 0.00 0.00 32.44 5.01
73 74 0.994247 ACCAGATCCTGAATGTGCCA 59.006 50.000 0.00 0.00 32.44 4.92
74 75 1.064906 ACCAGATCCTGAATGTGCCAG 60.065 52.381 0.00 0.00 32.44 4.85
75 76 1.064906 CCAGATCCTGAATGTGCCAGT 60.065 52.381 0.00 0.00 32.44 4.00
76 77 2.286872 CAGATCCTGAATGTGCCAGTC 58.713 52.381 0.00 0.00 32.44 3.51
77 78 1.911357 AGATCCTGAATGTGCCAGTCA 59.089 47.619 5.45 5.45 36.10 3.41
78 79 2.012673 GATCCTGAATGTGCCAGTCAC 58.987 52.381 1.90 0.00 45.82 3.67
79 80 6.903557 CAGATCCTGAATGTGCCAGTCACA 62.904 50.000 0.00 0.00 45.87 3.58
86 87 1.356624 GTGCCAGTCACAACACTGC 59.643 57.895 0.00 0.00 44.98 4.40
87 88 1.097547 GTGCCAGTCACAACACTGCT 61.098 55.000 0.00 0.00 44.98 4.24
88 89 0.815213 TGCCAGTCACAACACTGCTC 60.815 55.000 0.00 0.00 42.29 4.26
89 90 1.510480 GCCAGTCACAACACTGCTCC 61.510 60.000 0.00 0.00 42.29 4.70
90 91 0.179048 CCAGTCACAACACTGCTCCA 60.179 55.000 0.00 0.00 42.29 3.86
91 92 1.224075 CAGTCACAACACTGCTCCAG 58.776 55.000 0.00 0.00 37.58 3.86
92 93 1.123077 AGTCACAACACTGCTCCAGA 58.877 50.000 0.00 0.00 35.18 3.86
93 94 1.202580 AGTCACAACACTGCTCCAGAC 60.203 52.381 0.00 0.00 35.18 3.51
94 95 0.829990 TCACAACACTGCTCCAGACA 59.170 50.000 0.00 0.00 35.18 3.41
95 96 0.940126 CACAACACTGCTCCAGACAC 59.060 55.000 0.00 0.00 35.18 3.67
96 97 0.179045 ACAACACTGCTCCAGACACC 60.179 55.000 0.00 0.00 35.18 4.16
97 98 0.107456 CAACACTGCTCCAGACACCT 59.893 55.000 0.00 0.00 35.18 4.00
98 99 0.839946 AACACTGCTCCAGACACCTT 59.160 50.000 0.00 0.00 35.18 3.50
99 100 1.717032 ACACTGCTCCAGACACCTTA 58.283 50.000 0.00 0.00 35.18 2.69
100 101 2.047061 ACACTGCTCCAGACACCTTAA 58.953 47.619 0.00 0.00 35.18 1.85
101 102 2.639839 ACACTGCTCCAGACACCTTAAT 59.360 45.455 0.00 0.00 35.18 1.40
102 103 3.073062 ACACTGCTCCAGACACCTTAATT 59.927 43.478 0.00 0.00 35.18 1.40
103 104 3.438087 CACTGCTCCAGACACCTTAATTG 59.562 47.826 0.00 0.00 35.18 2.32
104 105 3.327757 ACTGCTCCAGACACCTTAATTGA 59.672 43.478 0.00 0.00 35.18 2.57
105 106 3.674997 TGCTCCAGACACCTTAATTGAC 58.325 45.455 0.00 0.00 0.00 3.18
106 107 3.072330 TGCTCCAGACACCTTAATTGACA 59.928 43.478 0.00 0.00 0.00 3.58
107 108 4.072131 GCTCCAGACACCTTAATTGACAA 58.928 43.478 0.00 0.00 0.00 3.18
108 109 4.518970 GCTCCAGACACCTTAATTGACAAA 59.481 41.667 0.00 0.00 0.00 2.83
109 110 5.335191 GCTCCAGACACCTTAATTGACAAAG 60.335 44.000 0.00 0.00 0.00 2.77
110 111 5.070001 TCCAGACACCTTAATTGACAAAGG 58.930 41.667 3.58 3.58 46.44 3.11
111 112 5.070001 CCAGACACCTTAATTGACAAAGGA 58.930 41.667 11.00 0.00 44.27 3.36
112 113 5.182001 CCAGACACCTTAATTGACAAAGGAG 59.818 44.000 11.00 6.25 44.27 3.69
113 114 5.182001 CAGACACCTTAATTGACAAAGGAGG 59.818 44.000 11.00 10.74 44.27 4.30
114 115 5.073144 AGACACCTTAATTGACAAAGGAGGA 59.927 40.000 16.49 0.00 44.27 3.71
115 116 5.701224 ACACCTTAATTGACAAAGGAGGAA 58.299 37.500 16.49 0.00 44.27 3.36
116 117 6.133356 ACACCTTAATTGACAAAGGAGGAAA 58.867 36.000 16.49 0.00 44.27 3.13
117 118 6.609616 ACACCTTAATTGACAAAGGAGGAAAA 59.390 34.615 16.49 0.00 44.27 2.29
118 119 7.125053 ACACCTTAATTGACAAAGGAGGAAAAA 59.875 33.333 16.49 0.00 44.27 1.94
119 120 8.150296 CACCTTAATTGACAAAGGAGGAAAAAT 58.850 33.333 16.49 0.00 44.27 1.82
120 121 8.150296 ACCTTAATTGACAAAGGAGGAAAAATG 58.850 33.333 16.49 0.00 44.27 2.32
121 122 7.118245 CCTTAATTGACAAAGGAGGAAAAATGC 59.882 37.037 7.85 0.00 44.27 3.56
436 437 2.562912 CACACACCGGCAAGATGC 59.437 61.111 0.00 0.00 44.08 3.91
476 477 0.180171 CAGGACCACAACTGACACCA 59.820 55.000 0.00 0.00 36.86 4.17
479 480 1.408266 GGACCACAACTGACACCAAGT 60.408 52.381 0.00 0.00 0.00 3.16
488 489 2.934083 GACACCAAGTCAAGAGCCC 58.066 57.895 0.00 0.00 46.77 5.19
519 520 3.929948 CGCCGCGCTGGATCTTTC 61.930 66.667 20.06 2.67 42.00 2.62
531 532 3.009723 TGGATCTTTCGTTGGCTTCATC 58.990 45.455 0.00 0.00 0.00 2.92
536 537 2.739849 TTCGTTGGCTTCATCCGGCA 62.740 55.000 0.00 0.00 34.94 5.69
540 541 3.207669 GGCTTCATCCGGCAGCAG 61.208 66.667 14.31 3.33 35.05 4.24
543 544 4.081185 TTCATCCGGCAGCAGCGA 62.081 61.111 0.00 0.00 43.41 4.93
554 555 4.828925 GCAGCGACAGAGGGGAGC 62.829 72.222 0.00 0.00 0.00 4.70
555 556 3.073735 CAGCGACAGAGGGGAGCT 61.074 66.667 0.00 0.00 38.90 4.09
577 578 1.220236 AGGAGGAGGAAGAGGAGATGG 59.780 57.143 0.00 0.00 0.00 3.51
655 656 1.071542 TGGGTTGACATCGTCATGTGT 59.928 47.619 0.00 0.00 43.79 3.72
687 688 5.072055 TGGATCAATTCTTGTTCTCAGCAA 58.928 37.500 0.00 0.00 31.61 3.91
744 751 3.900971 TGCAATGGAAGATGATTAGCCA 58.099 40.909 0.00 0.00 0.00 4.75
787 794 2.310052 CACTCCCCCATCTTCTCCTTTT 59.690 50.000 0.00 0.00 0.00 2.27
798 805 3.258622 TCTTCTCCTTTTCCCGTTCTCTC 59.741 47.826 0.00 0.00 0.00 3.20
841 848 4.785453 GCACGCCTCCTCCCCAAG 62.785 72.222 0.00 0.00 0.00 3.61
842 849 4.785453 CACGCCTCCTCCCCAAGC 62.785 72.222 0.00 0.00 0.00 4.01
844 851 4.168291 CGCCTCCTCCCCAAGCTC 62.168 72.222 0.00 0.00 0.00 4.09
845 852 3.803162 GCCTCCTCCCCAAGCTCC 61.803 72.222 0.00 0.00 0.00 4.70
846 853 3.093172 CCTCCTCCCCAAGCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
847 854 3.093172 CTCCTCCCCAAGCTCCCC 61.093 72.222 0.00 0.00 0.00 4.81
848 855 4.760220 TCCTCCCCAAGCTCCCCC 62.760 72.222 0.00 0.00 0.00 5.40
871 878 1.208259 CGCAAGAACCAACTTTTGCC 58.792 50.000 2.85 0.00 42.08 4.52
872 879 1.581934 GCAAGAACCAACTTTTGCCC 58.418 50.000 0.00 0.00 39.88 5.36
873 880 1.810031 GCAAGAACCAACTTTTGCCCC 60.810 52.381 0.00 0.00 39.88 5.80
874 881 1.128200 AAGAACCAACTTTTGCCCCC 58.872 50.000 0.00 0.00 0.00 5.40
875 882 0.031616 AGAACCAACTTTTGCCCCCA 60.032 50.000 0.00 0.00 0.00 4.96
876 883 0.833949 GAACCAACTTTTGCCCCCAA 59.166 50.000 0.00 0.00 0.00 4.12
877 884 1.210722 GAACCAACTTTTGCCCCCAAA 59.789 47.619 0.00 0.00 39.08 3.28
878 885 1.517238 ACCAACTTTTGCCCCCAAAT 58.483 45.000 0.00 0.00 40.40 2.32
879 886 1.419762 ACCAACTTTTGCCCCCAAATC 59.580 47.619 0.00 0.00 40.40 2.17
880 887 1.271325 CCAACTTTTGCCCCCAAATCC 60.271 52.381 0.00 0.00 40.40 3.01
881 888 1.064003 AACTTTTGCCCCCAAATCCC 58.936 50.000 0.00 0.00 40.40 3.85
882 889 0.840288 ACTTTTGCCCCCAAATCCCC 60.840 55.000 0.00 0.00 40.40 4.81
883 890 1.540118 TTTTGCCCCCAAATCCCCC 60.540 57.895 0.00 0.00 40.40 5.40
901 908 1.495148 CCCCCTAAACTCTCCAATCCC 59.505 57.143 0.00 0.00 0.00 3.85
902 909 1.495148 CCCCTAAACTCTCCAATCCCC 59.505 57.143 0.00 0.00 0.00 4.81
903 910 2.493091 CCCTAAACTCTCCAATCCCCT 58.507 52.381 0.00 0.00 0.00 4.79
904 911 2.439880 CCCTAAACTCTCCAATCCCCTC 59.560 54.545 0.00 0.00 0.00 4.30
905 912 2.439880 CCTAAACTCTCCAATCCCCTCC 59.560 54.545 0.00 0.00 0.00 4.30
906 913 1.299939 AAACTCTCCAATCCCCTCCC 58.700 55.000 0.00 0.00 0.00 4.30
907 914 0.624795 AACTCTCCAATCCCCTCCCC 60.625 60.000 0.00 0.00 0.00 4.81
908 915 1.772156 CTCTCCAATCCCCTCCCCC 60.772 68.421 0.00 0.00 0.00 5.40
938 1184 1.043116 TCCCGCACCAGATTCGATCT 61.043 55.000 0.00 0.00 41.15 2.75
939 1185 0.598680 CCCGCACCAGATTCGATCTC 60.599 60.000 0.00 0.00 37.58 2.75
959 1205 2.836187 CCCCTCCCAAAACCCACGA 61.836 63.158 0.00 0.00 0.00 4.35
994 1240 3.199891 CCGAATCCGCCGTTTCCC 61.200 66.667 0.00 0.00 0.00 3.97
1068 1314 2.473760 CGATCTGTCCGTCCGAGCT 61.474 63.158 0.00 0.00 0.00 4.09
1069 1315 1.064946 GATCTGTCCGTCCGAGCTG 59.935 63.158 0.00 0.00 0.00 4.24
1323 1579 1.167851 CCGAAATTTGGCAGAGCTCA 58.832 50.000 17.77 0.00 0.00 4.26
1341 1616 1.000060 TCACTGCGTACCAACTGTACC 60.000 52.381 0.00 0.00 45.89 3.34
1459 1737 2.854963 TGCTGCTGAACTGAACTGAAT 58.145 42.857 0.00 0.00 0.00 2.57
1590 1868 9.261180 CATTATCCATGGGTATTGTCGATATAC 57.739 37.037 13.02 10.54 0.00 1.47
1591 1869 6.867519 ATCCATGGGTATTGTCGATATACA 57.132 37.500 13.02 0.00 31.53 2.29
1592 1870 6.673839 TCCATGGGTATTGTCGATATACAA 57.326 37.500 13.02 6.46 43.16 2.41
1593 1871 6.460781 TCCATGGGTATTGTCGATATACAAC 58.539 40.000 13.02 11.98 41.89 3.32
1594 1872 6.042208 TCCATGGGTATTGTCGATATACAACA 59.958 38.462 13.02 15.48 41.89 3.33
1595 1873 6.708502 CCATGGGTATTGTCGATATACAACAA 59.291 38.462 2.85 4.92 41.89 2.83
1596 1874 7.307751 CCATGGGTATTGTCGATATACAACAAC 60.308 40.741 2.85 7.72 41.89 3.32
1597 1875 6.641474 TGGGTATTGTCGATATACAACAACA 58.359 36.000 17.26 8.68 41.89 3.33
1598 1876 7.104290 TGGGTATTGTCGATATACAACAACAA 58.896 34.615 17.26 3.08 41.89 2.83
1599 1877 7.064847 TGGGTATTGTCGATATACAACAACAAC 59.935 37.037 17.26 6.42 41.89 3.32
1600 1878 7.064847 GGGTATTGTCGATATACAACAACAACA 59.935 37.037 17.26 0.00 41.89 3.33
1601 1879 8.444715 GGTATTGTCGATATACAACAACAACAA 58.555 33.333 17.26 2.12 41.89 2.83
1602 1880 9.257865 GTATTGTCGATATACAACAACAACAAC 57.742 33.333 12.95 0.00 41.89 3.32
1603 1881 6.846325 TGTCGATATACAACAACAACAACA 57.154 33.333 0.00 0.00 0.00 3.33
1604 1882 7.247929 TGTCGATATACAACAACAACAACAA 57.752 32.000 0.00 0.00 0.00 2.83
1605 1883 7.127042 TGTCGATATACAACAACAACAACAAC 58.873 34.615 0.00 0.00 0.00 3.32
1606 1884 7.127042 GTCGATATACAACAACAACAACAACA 58.873 34.615 0.00 0.00 0.00 3.33
1607 1885 7.640630 GTCGATATACAACAACAACAACAACAA 59.359 33.333 0.00 0.00 0.00 2.83
1608 1886 8.182227 TCGATATACAACAACAACAACAACAAA 58.818 29.630 0.00 0.00 0.00 2.83
1609 1887 8.468349 CGATATACAACAACAACAACAACAAAG 58.532 33.333 0.00 0.00 0.00 2.77
1610 1888 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
1611 1889 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
1612 1890 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
1613 1891 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
1614 1892 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
1615 1893 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
1616 1894 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
1617 1895 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
1618 1896 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
1619 1897 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
1620 1898 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
1621 1899 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
1622 1900 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
1623 1901 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
1624 1902 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
1625 1903 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
1626 1904 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
1627 1905 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
1628 1906 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
1629 1907 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
1630 1908 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
1639 1917 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
1640 1918 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
1641 1919 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
1642 1920 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
1643 1921 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
1644 1922 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
1645 1923 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
1646 1924 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
1647 1925 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
1648 1926 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
1649 1927 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
1650 1928 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
1735 2013 4.726416 CAATTTCATCTTTGACTGACCGG 58.274 43.478 0.00 0.00 0.00 5.28
1751 2029 1.120530 CCGGGCTAGTACATTGTCCT 58.879 55.000 0.00 0.00 0.00 3.85
1912 2190 2.627699 GTGGATTTGGGCTTCTGTTCAA 59.372 45.455 0.00 0.00 0.00 2.69
1963 2241 2.545742 GGGCCAAAGTAAGCACAAACTG 60.546 50.000 4.39 0.00 30.81 3.16
1977 2255 0.874390 AAACTGTGTGGTGCTATGCG 59.126 50.000 0.00 0.00 0.00 4.73
1999 2277 4.261572 CGAGGATCCTTTTGCACTTTTTCA 60.262 41.667 17.42 0.00 0.00 2.69
2107 2385 5.660864 TGAAGTTTGGTCCAATTTTCCTTCT 59.339 36.000 18.69 3.33 0.00 2.85
2200 2483 5.201713 TGGCTGAGCTAGTACATTACATC 57.798 43.478 3.72 0.00 0.00 3.06
2203 2486 5.282510 GCTGAGCTAGTACATTACATCGTT 58.717 41.667 0.00 0.00 0.00 3.85
2207 2490 7.194278 TGAGCTAGTACATTACATCGTTCTTC 58.806 38.462 0.00 0.00 0.00 2.87
2208 2491 7.067129 TGAGCTAGTACATTACATCGTTCTTCT 59.933 37.037 0.00 0.00 0.00 2.85
2268 2551 8.482429 GCAGTCAATTTTGTGTATCTTTCTTTG 58.518 33.333 0.00 0.00 0.00 2.77
2289 2572 3.053693 TGCCTGTCAATAATTAGCAGGGT 60.054 43.478 20.21 0.00 44.91 4.34
2523 2811 3.243975 CCAAAATGGGGCTATGAATCTGC 60.244 47.826 0.00 0.00 32.67 4.26
2678 2966 0.877071 GACCATATGCCAATGAGCCG 59.123 55.000 0.00 0.00 0.00 5.52
2888 3188 2.936032 GGTTCAGGGCTCCAGGGT 60.936 66.667 0.00 0.00 0.00 4.34
2996 3296 1.923356 TCCCTGAGCAAAATGTTCCC 58.077 50.000 0.00 0.00 0.00 3.97
3026 3326 1.130749 CACTGGAAGACGTCTAGGTCG 59.869 57.143 20.39 9.16 39.13 4.79
3065 3365 0.751277 CCATTGCTTCGCCCATACCA 60.751 55.000 0.00 0.00 0.00 3.25
3140 3443 1.442148 GTACTCCAGGACATCGCCC 59.558 63.158 0.00 0.00 0.00 6.13
3287 3608 0.529378 CAAGGGACAAGCAAGATGCC 59.471 55.000 0.00 0.00 46.52 4.40
3290 3611 1.648467 GGGACAAGCAAGATGCCGAC 61.648 60.000 0.00 0.00 46.52 4.79
3296 3617 2.167861 GCAAGATGCCGACGAGGTC 61.168 63.158 0.00 0.00 43.70 3.85
3308 3629 0.456221 ACGAGGTCGAAGCATACAGG 59.544 55.000 6.35 0.00 43.02 4.00
3314 3635 2.229039 CGAAGCATACAGGGCATCG 58.771 57.895 0.00 0.00 44.29 3.84
3320 3641 1.024271 CATACAGGGCATCGTTTGGG 58.976 55.000 0.00 0.00 0.00 4.12
3329 3650 0.950836 CATCGTTTGGGTTCAGTGCA 59.049 50.000 0.00 0.00 0.00 4.57
3344 3665 2.862536 CAGTGCAGATGAGATGGTTACG 59.137 50.000 0.00 0.00 0.00 3.18
3353 3674 2.164422 TGAGATGGTTACGAGCACTCAG 59.836 50.000 0.00 0.00 36.95 3.35
3418 3739 3.962718 AGCATATCCCCATTTGGAAACAG 59.037 43.478 0.00 0.00 44.54 3.16
3464 3785 1.474077 GTGTGCCTGTTCAATGATCCC 59.526 52.381 0.00 0.00 0.00 3.85
3515 3836 5.290386 GGTAAGATGGGTAGATCACTTTCG 58.710 45.833 0.00 0.00 0.00 3.46
3548 3869 2.673775 TGATGACAAGCCCCTCAAAA 57.326 45.000 0.00 0.00 0.00 2.44
3633 3966 1.219213 ACTTCCAACCCCAACCATTCA 59.781 47.619 0.00 0.00 0.00 2.57
3674 4007 4.024556 CCGATCTTTGTATGCCAGAATCAC 60.025 45.833 0.00 0.00 0.00 3.06
3682 4015 6.638096 TGTATGCCAGAATCACCAATATTG 57.362 37.500 8.58 8.58 0.00 1.90
3683 4016 6.128486 TGTATGCCAGAATCACCAATATTGT 58.872 36.000 14.25 0.18 0.00 2.71
3685 4018 5.327616 TGCCAGAATCACCAATATTGTTG 57.672 39.130 14.25 10.52 0.00 3.33
3703 4038 5.560966 TGTTGGTTTTCTTCACTCAGAAC 57.439 39.130 0.00 0.00 32.28 3.01
3762 4097 3.393472 GCTCCATAGCCTGAACCTG 57.607 57.895 0.00 0.00 43.40 4.00
3771 4106 0.610232 GCCTGAACCTGAATGCTGGT 60.610 55.000 0.00 0.00 46.94 4.00
3772 4107 1.171308 CCTGAACCTGAATGCTGGTG 58.829 55.000 2.40 0.00 44.55 4.17
3773 4108 1.546323 CCTGAACCTGAATGCTGGTGT 60.546 52.381 2.40 0.00 44.55 4.16
3774 4109 2.233271 CTGAACCTGAATGCTGGTGTT 58.767 47.619 2.40 0.00 44.55 3.32
3775 4110 1.955778 TGAACCTGAATGCTGGTGTTG 59.044 47.619 2.40 0.00 44.55 3.33
3776 4111 1.956477 GAACCTGAATGCTGGTGTTGT 59.044 47.619 2.40 0.00 44.55 3.32
3777 4112 1.321474 ACCTGAATGCTGGTGTTGTG 58.679 50.000 0.43 0.00 43.77 3.33
3778 4113 0.038892 CCTGAATGCTGGTGTTGTGC 60.039 55.000 0.00 0.00 0.00 4.57
3779 4114 0.669619 CTGAATGCTGGTGTTGTGCA 59.330 50.000 0.00 0.00 41.13 4.57
3780 4115 1.067364 CTGAATGCTGGTGTTGTGCAA 59.933 47.619 0.00 0.00 40.24 4.08
3781 4116 1.687660 TGAATGCTGGTGTTGTGCAAT 59.312 42.857 0.00 0.00 40.24 3.56
3782 4117 2.063266 GAATGCTGGTGTTGTGCAATG 58.937 47.619 0.00 0.00 40.24 2.82
3783 4118 1.042229 ATGCTGGTGTTGTGCAATGT 58.958 45.000 0.00 0.00 40.24 2.71
3784 4119 0.822811 TGCTGGTGTTGTGCAATGTT 59.177 45.000 0.00 0.00 33.48 2.71
3785 4120 1.206610 TGCTGGTGTTGTGCAATGTTT 59.793 42.857 0.00 0.00 33.48 2.83
3786 4121 1.860326 GCTGGTGTTGTGCAATGTTTC 59.140 47.619 0.00 0.00 0.00 2.78
3787 4122 2.481795 GCTGGTGTTGTGCAATGTTTCT 60.482 45.455 0.00 0.00 0.00 2.52
3788 4123 3.117794 CTGGTGTTGTGCAATGTTTCTG 58.882 45.455 0.00 0.00 0.00 3.02
3789 4124 1.860326 GGTGTTGTGCAATGTTTCTGC 59.140 47.619 0.00 0.00 40.35 4.26
3815 4150 1.607801 GCTTCCAACCCCAGCCATTC 61.608 60.000 0.00 0.00 0.00 2.67
3816 4151 0.251742 CTTCCAACCCCAGCCATTCA 60.252 55.000 0.00 0.00 0.00 2.57
3817 4152 0.413037 TTCCAACCCCAGCCATTCAT 59.587 50.000 0.00 0.00 0.00 2.57
3818 4153 0.413037 TCCAACCCCAGCCATTCATT 59.587 50.000 0.00 0.00 0.00 2.57
3819 4154 0.826062 CCAACCCCAGCCATTCATTC 59.174 55.000 0.00 0.00 0.00 2.67
3820 4155 1.559368 CAACCCCAGCCATTCATTCA 58.441 50.000 0.00 0.00 0.00 2.57
3821 4156 2.112998 CAACCCCAGCCATTCATTCAT 58.887 47.619 0.00 0.00 0.00 2.57
3822 4157 2.502538 CAACCCCAGCCATTCATTCATT 59.497 45.455 0.00 0.00 0.00 2.57
3823 4158 2.391678 ACCCCAGCCATTCATTCATTC 58.608 47.619 0.00 0.00 0.00 2.67
3824 4159 2.023695 ACCCCAGCCATTCATTCATTCT 60.024 45.455 0.00 0.00 0.00 2.40
3825 4160 2.364324 CCCCAGCCATTCATTCATTCTG 59.636 50.000 0.00 0.00 0.00 3.02
3826 4161 3.028850 CCCAGCCATTCATTCATTCTGT 58.971 45.455 0.00 0.00 0.00 3.41
3827 4162 3.449737 CCCAGCCATTCATTCATTCTGTT 59.550 43.478 0.00 0.00 0.00 3.16
3828 4163 4.646040 CCCAGCCATTCATTCATTCTGTTA 59.354 41.667 0.00 0.00 0.00 2.41
3829 4164 5.303589 CCCAGCCATTCATTCATTCTGTTAT 59.696 40.000 0.00 0.00 0.00 1.89
3830 4165 6.491062 CCCAGCCATTCATTCATTCTGTTATA 59.509 38.462 0.00 0.00 0.00 0.98
3831 4166 7.309012 CCCAGCCATTCATTCATTCTGTTATAG 60.309 40.741 0.00 0.00 0.00 1.31
3832 4167 7.230108 CCAGCCATTCATTCATTCTGTTATAGT 59.770 37.037 0.00 0.00 0.00 2.12
3833 4168 9.276590 CAGCCATTCATTCATTCTGTTATAGTA 57.723 33.333 0.00 0.00 0.00 1.82
3834 4169 9.277783 AGCCATTCATTCATTCTGTTATAGTAC 57.722 33.333 0.00 0.00 0.00 2.73
3835 4170 9.277783 GCCATTCATTCATTCTGTTATAGTACT 57.722 33.333 0.00 0.00 0.00 2.73
3855 4190 8.779354 AGTACTGATCTTTTTACACCAGAATC 57.221 34.615 0.00 0.00 0.00 2.52
3856 4191 8.375506 AGTACTGATCTTTTTACACCAGAATCA 58.624 33.333 0.00 0.00 0.00 2.57
3857 4192 9.167311 GTACTGATCTTTTTACACCAGAATCAT 57.833 33.333 0.00 0.00 0.00 2.45
3858 4193 8.641498 ACTGATCTTTTTACACCAGAATCATT 57.359 30.769 0.00 0.00 0.00 2.57
3859 4194 9.739276 ACTGATCTTTTTACACCAGAATCATTA 57.261 29.630 0.00 0.00 0.00 1.90
3871 4206 9.034800 ACACCAGAATCATTAATATTTGTTGGT 57.965 29.630 0.00 0.00 0.00 3.67
3872 4207 9.874205 CACCAGAATCATTAATATTTGTTGGTT 57.126 29.630 0.00 0.00 0.00 3.67
3927 4262 9.513727 GCAGTAACTTGAACTATACTTAGTACC 57.486 37.037 0.00 0.00 37.70 3.34
3929 4264 9.454859 AGTAACTTGAACTATACTTAGTACCGT 57.545 33.333 0.00 0.00 37.70 4.83
3931 4266 8.572855 AACTTGAACTATACTTAGTACCGTCT 57.427 34.615 0.00 0.00 37.70 4.18
3932 4267 8.207521 ACTTGAACTATACTTAGTACCGTCTC 57.792 38.462 0.00 0.00 37.70 3.36
3937 4272 8.845413 AACTATACTTAGTACCGTCTCCATAG 57.155 38.462 0.00 0.00 37.70 2.23
3946 4281 1.482593 CCGTCTCCATAGCCTGAACTT 59.517 52.381 0.00 0.00 0.00 2.66
3947 4282 2.544685 CGTCTCCATAGCCTGAACTTG 58.455 52.381 0.00 0.00 0.00 3.16
3948 4283 2.166459 CGTCTCCATAGCCTGAACTTGA 59.834 50.000 0.00 0.00 0.00 3.02
3951 4286 5.189180 GTCTCCATAGCCTGAACTTGAATT 58.811 41.667 0.00 0.00 0.00 2.17
3952 4287 5.649831 GTCTCCATAGCCTGAACTTGAATTT 59.350 40.000 0.00 0.00 0.00 1.82
3953 4288 5.882557 TCTCCATAGCCTGAACTTGAATTTC 59.117 40.000 0.00 0.00 0.00 2.17
3955 4290 4.201950 CCATAGCCTGAACTTGAATTTCGG 60.202 45.833 0.00 0.00 0.00 4.30
3959 4294 3.609409 GCCTGAACTTGAATTTCGGTGTC 60.609 47.826 3.84 0.00 0.00 3.67
3996 4333 3.620821 GCAATCTTACTCACTGCTCCTTC 59.379 47.826 0.00 0.00 0.00 3.46
4048 4385 2.641559 GTCCGAGGACGACACGTT 59.358 61.111 6.51 0.00 41.37 3.99
4055 4392 2.964925 GACGACACGTTGGCTGCA 60.965 61.111 0.50 0.00 41.37 4.41
4175 4512 2.283529 GGTCGAGTTCAGGAGGGCA 61.284 63.158 0.00 0.00 0.00 5.36
4270 4741 7.257790 TGGATGGTGCACTAGCTAATATATT 57.742 36.000 18.21 2.97 42.74 1.28
4333 4804 2.509336 GCCTAGCGTGCATGTCGT 60.509 61.111 7.93 0.00 0.00 4.34
4334 4805 2.517450 GCCTAGCGTGCATGTCGTC 61.517 63.158 7.93 6.55 0.00 4.20
4336 4807 0.528466 CCTAGCGTGCATGTCGTCAT 60.528 55.000 7.93 0.00 34.21 3.06
4337 4808 0.848942 CTAGCGTGCATGTCGTCATC 59.151 55.000 7.93 0.00 31.15 2.92
4338 4809 0.865639 TAGCGTGCATGTCGTCATCG 60.866 55.000 7.93 0.00 38.55 3.84
4339 4810 2.158330 GCGTGCATGTCGTCATCGA 61.158 57.895 7.93 0.00 44.12 3.59
4539 5013 0.180406 CTGTAACCATTAGCCGGCCT 59.820 55.000 26.15 13.52 0.00 5.19
4548 5022 3.993614 TAGCCGGCCTGCACAATGG 62.994 63.158 26.15 3.04 0.00 3.16
4605 5081 1.638467 GCCTGAATACTCGCTTGCG 59.362 57.895 8.87 8.87 0.00 4.85
4680 5181 1.154016 CAGCAGCAGCAGCATTGAC 60.154 57.895 12.92 0.00 45.49 3.18
4681 5182 1.602605 AGCAGCAGCAGCATTGACA 60.603 52.632 12.92 0.00 45.49 3.58
4682 5183 1.176619 AGCAGCAGCAGCATTGACAA 61.177 50.000 12.92 0.00 45.49 3.18
4683 5184 0.108804 GCAGCAGCAGCATTGACAAT 60.109 50.000 4.63 0.00 45.49 2.71
4684 5185 1.629013 CAGCAGCAGCATTGACAATG 58.371 50.000 21.56 21.56 45.49 2.82
4685 5186 1.067846 CAGCAGCAGCATTGACAATGT 60.068 47.619 25.18 12.22 45.49 2.71
4711 5212 7.943952 TGGTAAAATTAATCAAAATGAACGCG 58.056 30.769 3.53 3.53 0.00 6.01
4728 5229 3.748863 CGAGCTGACCTTGCATACT 57.251 52.632 0.00 0.00 0.00 2.12
4729 5230 2.015736 CGAGCTGACCTTGCATACTT 57.984 50.000 0.00 0.00 0.00 2.24
4730 5231 2.350522 CGAGCTGACCTTGCATACTTT 58.649 47.619 0.00 0.00 0.00 2.66
4731 5232 2.094894 CGAGCTGACCTTGCATACTTTG 59.905 50.000 0.00 0.00 0.00 2.77
4732 5233 3.338249 GAGCTGACCTTGCATACTTTGA 58.662 45.455 0.00 0.00 0.00 2.69
4733 5234 3.753272 GAGCTGACCTTGCATACTTTGAA 59.247 43.478 0.00 0.00 0.00 2.69
4734 5235 4.144297 AGCTGACCTTGCATACTTTGAAA 58.856 39.130 0.00 0.00 0.00 2.69
4735 5236 4.768968 AGCTGACCTTGCATACTTTGAAAT 59.231 37.500 0.00 0.00 0.00 2.17
4792 5298 8.131731 GGAAGGAAGACTTTTGTTATATGCATC 58.868 37.037 0.19 0.00 40.21 3.91
4828 5334 4.380531 TGTTCTCTGCCTTTCTACAGTTG 58.619 43.478 0.00 0.00 35.37 3.16
4829 5335 4.141711 TGTTCTCTGCCTTTCTACAGTTGT 60.142 41.667 0.00 0.00 35.37 3.32
4831 5337 5.801531 TCTCTGCCTTTCTACAGTTGTTA 57.198 39.130 0.00 0.00 35.37 2.41
4832 5338 5.539048 TCTCTGCCTTTCTACAGTTGTTAC 58.461 41.667 0.00 0.00 35.37 2.50
4833 5339 5.069914 TCTCTGCCTTTCTACAGTTGTTACA 59.930 40.000 0.00 0.00 35.37 2.41
4834 5340 5.865085 TCTGCCTTTCTACAGTTGTTACAT 58.135 37.500 0.00 0.00 35.37 2.29
4836 5342 7.446769 TCTGCCTTTCTACAGTTGTTACATAA 58.553 34.615 0.00 0.00 35.37 1.90
4839 5345 6.967199 GCCTTTCTACAGTTGTTACATAATGC 59.033 38.462 0.00 0.00 0.00 3.56
4841 5347 8.677300 CCTTTCTACAGTTGTTACATAATGCAT 58.323 33.333 0.00 0.00 0.00 3.96
4846 5352 9.624697 CTACAGTTGTTACATAATGCATTTGTT 57.375 29.630 18.75 4.48 0.00 2.83
4847 5353 8.519492 ACAGTTGTTACATAATGCATTTGTTC 57.481 30.769 18.75 15.82 0.00 3.18
4848 5354 8.359642 ACAGTTGTTACATAATGCATTTGTTCT 58.640 29.630 18.75 11.43 0.00 3.01
4849 5355 8.853345 CAGTTGTTACATAATGCATTTGTTCTC 58.147 33.333 18.75 13.66 0.00 2.87
4872 5378 7.171508 TCTCACAGAGTTGCAATTTGTACTTAG 59.828 37.037 0.59 4.51 0.00 2.18
4876 5382 5.765182 AGAGTTGCAATTTGTACTTAGCTGT 59.235 36.000 0.59 0.00 0.00 4.40
4904 5410 9.357652 GTTACATAATGCATTTGTTCTCACATT 57.642 29.630 18.75 0.00 31.06 2.71
4934 5440 0.812811 TACGCGGCGTCTCATAGACT 60.813 55.000 32.91 5.61 42.92 3.24
4977 5483 4.823989 GGTTAGGCAGAGATGCAACATATT 59.176 41.667 2.29 0.00 36.33 1.28
4978 5484 5.997746 GGTTAGGCAGAGATGCAACATATTA 59.002 40.000 2.29 0.00 36.33 0.98
4979 5485 6.656693 GGTTAGGCAGAGATGCAACATATTAT 59.343 38.462 2.29 0.00 36.33 1.28
4980 5486 7.824289 GGTTAGGCAGAGATGCAACATATTATA 59.176 37.037 2.29 0.00 36.33 0.98
5053 5570 0.914644 CATTCTTCCTCCCAGGCTCA 59.085 55.000 0.00 0.00 34.61 4.26
5202 8571 1.284657 GTCTGATCAGTGACCATGCG 58.715 55.000 21.92 0.00 0.00 4.73
5219 8588 1.259507 TGCGCGTGTCTACAAAGAAAC 59.740 47.619 8.43 0.00 36.71 2.78
5254 8623 5.253330 TCACTCCAGCTTTCCGAATTAAAT 58.747 37.500 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.177744 TCAACGGTAATGCTCTGATATGGTATA 59.822 37.037 0.00 0.00 0.00 1.47
2 3 5.303333 TCAACGGTAATGCTCTGATATGGTA 59.697 40.000 0.00 0.00 0.00 3.25
3 4 4.100963 TCAACGGTAATGCTCTGATATGGT 59.899 41.667 0.00 0.00 0.00 3.55
5 6 5.049828 TGTCAACGGTAATGCTCTGATATG 58.950 41.667 0.00 0.00 0.00 1.78
6 7 5.276461 TGTCAACGGTAATGCTCTGATAT 57.724 39.130 0.00 0.00 0.00 1.63
7 8 4.729227 TGTCAACGGTAATGCTCTGATA 57.271 40.909 0.00 0.00 0.00 2.15
8 9 3.610040 TGTCAACGGTAATGCTCTGAT 57.390 42.857 0.00 0.00 0.00 2.90
9 10 3.394674 TTGTCAACGGTAATGCTCTGA 57.605 42.857 0.00 0.00 0.00 3.27
10 11 3.498397 AGTTTGTCAACGGTAATGCTCTG 59.502 43.478 0.00 0.00 38.03 3.35
11 12 3.740115 AGTTTGTCAACGGTAATGCTCT 58.260 40.909 0.00 0.00 38.03 4.09
12 13 4.689345 ACTAGTTTGTCAACGGTAATGCTC 59.311 41.667 0.00 0.00 38.03 4.26
13 14 4.638304 ACTAGTTTGTCAACGGTAATGCT 58.362 39.130 0.00 0.00 38.03 3.79
14 15 4.449743 TGACTAGTTTGTCAACGGTAATGC 59.550 41.667 0.00 0.00 43.08 3.56
15 16 5.464057 TGTGACTAGTTTGTCAACGGTAATG 59.536 40.000 0.00 0.00 46.77 1.90
16 17 5.603596 TGTGACTAGTTTGTCAACGGTAAT 58.396 37.500 0.00 0.00 46.77 1.89
17 18 5.008619 TGTGACTAGTTTGTCAACGGTAA 57.991 39.130 0.00 0.00 46.77 2.85
18 19 4.652421 TGTGACTAGTTTGTCAACGGTA 57.348 40.909 0.00 0.00 46.77 4.02
19 20 3.530265 TGTGACTAGTTTGTCAACGGT 57.470 42.857 0.00 0.00 46.77 4.83
20 21 4.331717 AGTTTGTGACTAGTTTGTCAACGG 59.668 41.667 0.00 0.00 46.77 4.44
21 22 5.062934 TGAGTTTGTGACTAGTTTGTCAACG 59.937 40.000 0.00 0.00 46.77 4.10
22 23 6.417191 TGAGTTTGTGACTAGTTTGTCAAC 57.583 37.500 0.00 0.00 46.77 3.18
23 24 8.725405 TTATGAGTTTGTGACTAGTTTGTCAA 57.275 30.769 0.00 0.00 46.77 3.18
24 25 8.902540 ATTATGAGTTTGTGACTAGTTTGTCA 57.097 30.769 0.00 0.00 43.72 3.58
25 26 9.599322 CAATTATGAGTTTGTGACTAGTTTGTC 57.401 33.333 0.00 0.00 39.19 3.18
26 27 8.567948 CCAATTATGAGTTTGTGACTAGTTTGT 58.432 33.333 0.00 0.00 39.19 2.83
27 28 7.538678 GCCAATTATGAGTTTGTGACTAGTTTG 59.461 37.037 0.00 0.00 39.19 2.93
28 29 7.230510 TGCCAATTATGAGTTTGTGACTAGTTT 59.769 33.333 0.00 0.00 39.19 2.66
29 30 6.714810 TGCCAATTATGAGTTTGTGACTAGTT 59.285 34.615 0.00 0.00 39.19 2.24
30 31 6.149474 GTGCCAATTATGAGTTTGTGACTAGT 59.851 38.462 0.00 0.00 39.19 2.57
31 32 6.403636 GGTGCCAATTATGAGTTTGTGACTAG 60.404 42.308 0.00 0.00 39.19 2.57
32 33 5.414454 GGTGCCAATTATGAGTTTGTGACTA 59.586 40.000 0.00 0.00 39.19 2.59
33 34 4.218417 GGTGCCAATTATGAGTTTGTGACT 59.782 41.667 0.00 0.00 42.70 3.41
34 35 4.022416 TGGTGCCAATTATGAGTTTGTGAC 60.022 41.667 0.00 0.00 0.00 3.67
35 36 4.148079 TGGTGCCAATTATGAGTTTGTGA 58.852 39.130 0.00 0.00 0.00 3.58
36 37 4.218200 TCTGGTGCCAATTATGAGTTTGTG 59.782 41.667 0.00 0.00 0.00 3.33
37 38 4.406456 TCTGGTGCCAATTATGAGTTTGT 58.594 39.130 0.00 0.00 0.00 2.83
38 39 5.450965 GGATCTGGTGCCAATTATGAGTTTG 60.451 44.000 0.00 0.00 0.00 2.93
39 40 4.646492 GGATCTGGTGCCAATTATGAGTTT 59.354 41.667 0.00 0.00 0.00 2.66
40 41 4.079558 AGGATCTGGTGCCAATTATGAGTT 60.080 41.667 0.00 0.00 0.00 3.01
41 42 3.461085 AGGATCTGGTGCCAATTATGAGT 59.539 43.478 0.00 0.00 0.00 3.41
42 43 3.819337 CAGGATCTGGTGCCAATTATGAG 59.181 47.826 0.00 0.00 0.00 2.90
43 44 3.459227 TCAGGATCTGGTGCCAATTATGA 59.541 43.478 0.00 0.00 31.51 2.15
44 45 3.824133 TCAGGATCTGGTGCCAATTATG 58.176 45.455 0.00 0.00 31.51 1.90
45 46 4.524802 TTCAGGATCTGGTGCCAATTAT 57.475 40.909 0.00 0.00 31.51 1.28
46 47 4.209538 CATTCAGGATCTGGTGCCAATTA 58.790 43.478 0.00 0.00 31.51 1.40
47 48 2.905415 TTCAGGATCTGGTGCCAATT 57.095 45.000 0.00 0.00 31.51 2.32
48 49 2.024655 ACATTCAGGATCTGGTGCCAAT 60.025 45.455 0.00 0.00 31.51 3.16
49 50 1.355381 ACATTCAGGATCTGGTGCCAA 59.645 47.619 0.00 0.00 31.51 4.52
50 51 0.994247 ACATTCAGGATCTGGTGCCA 59.006 50.000 0.00 0.00 31.51 4.92
51 52 1.386533 CACATTCAGGATCTGGTGCC 58.613 55.000 0.00 0.00 31.51 5.01
52 53 0.737219 GCACATTCAGGATCTGGTGC 59.263 55.000 10.33 10.33 38.90 5.01
53 54 1.340308 TGGCACATTCAGGATCTGGTG 60.340 52.381 0.00 0.00 31.51 4.17
54 55 0.994247 TGGCACATTCAGGATCTGGT 59.006 50.000 0.00 0.00 31.51 4.00
55 56 1.064906 ACTGGCACATTCAGGATCTGG 60.065 52.381 0.00 0.00 38.20 3.86
56 57 2.286872 GACTGGCACATTCAGGATCTG 58.713 52.381 0.00 0.00 37.97 2.90
57 58 1.911357 TGACTGGCACATTCAGGATCT 59.089 47.619 0.00 0.00 43.06 2.75
58 59 2.408271 TGACTGGCACATTCAGGATC 57.592 50.000 0.00 0.00 43.06 3.36
69 70 0.815213 GAGCAGTGTTGTGACTGGCA 60.815 55.000 0.00 0.00 43.17 4.92
70 71 1.510480 GGAGCAGTGTTGTGACTGGC 61.510 60.000 0.00 0.00 43.17 4.85
71 72 0.179048 TGGAGCAGTGTTGTGACTGG 60.179 55.000 0.00 0.00 43.17 4.00
72 73 1.202568 TCTGGAGCAGTGTTGTGACTG 60.203 52.381 0.00 0.00 45.34 3.51
73 74 1.123077 TCTGGAGCAGTGTTGTGACT 58.877 50.000 0.00 0.00 32.61 3.41
74 75 1.221414 GTCTGGAGCAGTGTTGTGAC 58.779 55.000 0.00 0.00 32.61 3.67
75 76 0.829990 TGTCTGGAGCAGTGTTGTGA 59.170 50.000 0.00 0.00 32.61 3.58
76 77 0.940126 GTGTCTGGAGCAGTGTTGTG 59.060 55.000 0.00 0.00 32.61 3.33
77 78 0.179045 GGTGTCTGGAGCAGTGTTGT 60.179 55.000 0.00 0.00 32.61 3.32
78 79 0.107456 AGGTGTCTGGAGCAGTGTTG 59.893 55.000 0.00 0.00 32.61 3.33
79 80 0.839946 AAGGTGTCTGGAGCAGTGTT 59.160 50.000 0.00 0.00 32.61 3.32
80 81 1.717032 TAAGGTGTCTGGAGCAGTGT 58.283 50.000 0.00 0.00 32.61 3.55
81 82 2.839486 TTAAGGTGTCTGGAGCAGTG 57.161 50.000 0.00 0.00 32.61 3.66
82 83 3.327757 TCAATTAAGGTGTCTGGAGCAGT 59.672 43.478 0.00 0.00 32.61 4.40
83 84 3.686726 GTCAATTAAGGTGTCTGGAGCAG 59.313 47.826 0.00 0.00 0.00 4.24
84 85 3.072330 TGTCAATTAAGGTGTCTGGAGCA 59.928 43.478 0.00 0.00 0.00 4.26
85 86 3.674997 TGTCAATTAAGGTGTCTGGAGC 58.325 45.455 0.00 0.00 0.00 4.70
86 87 5.182001 CCTTTGTCAATTAAGGTGTCTGGAG 59.818 44.000 0.00 0.00 36.88 3.86
87 88 5.070001 CCTTTGTCAATTAAGGTGTCTGGA 58.930 41.667 0.00 0.00 36.88 3.86
88 89 5.070001 TCCTTTGTCAATTAAGGTGTCTGG 58.930 41.667 4.94 0.00 41.36 3.86
89 90 5.182001 CCTCCTTTGTCAATTAAGGTGTCTG 59.818 44.000 4.94 0.00 41.36 3.51
90 91 5.073144 TCCTCCTTTGTCAATTAAGGTGTCT 59.927 40.000 4.94 0.00 41.36 3.41
91 92 5.313712 TCCTCCTTTGTCAATTAAGGTGTC 58.686 41.667 4.94 0.00 41.36 3.67
92 93 5.319043 TCCTCCTTTGTCAATTAAGGTGT 57.681 39.130 4.94 0.00 41.36 4.16
93 94 6.648879 TTTCCTCCTTTGTCAATTAAGGTG 57.351 37.500 4.94 3.09 41.36 4.00
94 95 7.669089 TTTTTCCTCCTTTGTCAATTAAGGT 57.331 32.000 4.94 0.00 41.36 3.50
95 96 7.118245 GCATTTTTCCTCCTTTGTCAATTAAGG 59.882 37.037 0.00 0.00 41.86 2.69
96 97 8.021955 GCATTTTTCCTCCTTTGTCAATTAAG 57.978 34.615 0.00 0.00 0.00 1.85
97 98 7.961325 GCATTTTTCCTCCTTTGTCAATTAA 57.039 32.000 0.00 0.00 0.00 1.40
419 420 2.562912 GCATCTTGCCGGTGTGTG 59.437 61.111 1.90 0.00 37.42 3.82
428 429 0.305922 GCGTGACTATGGCATCTTGC 59.694 55.000 1.65 0.00 44.08 4.01
429 430 1.945387 AGCGTGACTATGGCATCTTG 58.055 50.000 1.65 0.00 0.00 3.02
430 431 2.093500 TGAAGCGTGACTATGGCATCTT 60.093 45.455 1.65 0.00 0.00 2.40
431 432 1.482182 TGAAGCGTGACTATGGCATCT 59.518 47.619 1.65 0.00 0.00 2.90
432 433 1.939974 TGAAGCGTGACTATGGCATC 58.060 50.000 1.65 0.00 0.00 3.91
433 434 2.158914 TGATGAAGCGTGACTATGGCAT 60.159 45.455 4.88 4.88 0.00 4.40
434 435 1.206849 TGATGAAGCGTGACTATGGCA 59.793 47.619 0.00 0.00 0.00 4.92
435 436 1.939974 TGATGAAGCGTGACTATGGC 58.060 50.000 0.00 0.00 0.00 4.40
436 437 3.062763 GGATGATGAAGCGTGACTATGG 58.937 50.000 0.00 0.00 0.00 2.74
437 438 3.721035 TGGATGATGAAGCGTGACTATG 58.279 45.455 0.00 0.00 0.00 2.23
438 439 3.244009 CCTGGATGATGAAGCGTGACTAT 60.244 47.826 0.00 0.00 0.00 2.12
446 447 1.065199 TGTGGTCCTGGATGATGAAGC 60.065 52.381 0.00 0.00 0.00 3.86
476 477 1.597461 GTAGCGGGGCTCTTGACTT 59.403 57.895 0.00 0.00 40.44 3.01
479 480 2.284331 TGGTAGCGGGGCTCTTGA 60.284 61.111 0.00 0.00 40.44 3.02
508 509 1.131315 GAAGCCAACGAAAGATCCAGC 59.869 52.381 0.00 0.00 0.00 4.85
512 513 2.030946 CGGATGAAGCCAACGAAAGATC 59.969 50.000 0.00 0.00 0.00 2.75
518 519 2.435938 GCCGGATGAAGCCAACGA 60.436 61.111 5.05 0.00 0.00 3.85
519 520 2.745884 TGCCGGATGAAGCCAACG 60.746 61.111 5.05 0.00 0.00 4.10
536 537 3.073735 CTCCCCTCTGTCGCTGCT 61.074 66.667 0.00 0.00 0.00 4.24
540 541 3.071206 TCAGCTCCCCTCTGTCGC 61.071 66.667 0.00 0.00 33.48 5.19
543 544 1.001503 CTCCTCAGCTCCCCTCTGT 59.998 63.158 0.00 0.00 33.48 3.41
554 555 1.568597 TCTCCTCTTCCTCCTCCTCAG 59.431 57.143 0.00 0.00 0.00 3.35
555 556 1.687492 TCTCCTCTTCCTCCTCCTCA 58.313 55.000 0.00 0.00 0.00 3.86
577 578 9.627395 AGCTTCATCGTGATACTATACATTAAC 57.373 33.333 0.00 0.00 0.00 2.01
647 648 4.160439 TGATCCAGGAGTTAGACACATGAC 59.840 45.833 0.00 0.00 0.00 3.06
787 794 1.306970 GAGGGGAGAGAGAACGGGA 59.693 63.158 0.00 0.00 0.00 5.14
798 805 1.181786 GAGTGAGTGAGTGAGGGGAG 58.818 60.000 0.00 0.00 0.00 4.30
845 852 1.304052 TTGGTTCTTGCGATGGGGG 60.304 57.895 0.00 0.00 0.00 5.40
846 853 0.609131 AGTTGGTTCTTGCGATGGGG 60.609 55.000 0.00 0.00 0.00 4.96
847 854 1.247567 AAGTTGGTTCTTGCGATGGG 58.752 50.000 0.00 0.00 0.00 4.00
848 855 3.052036 CAAAAGTTGGTTCTTGCGATGG 58.948 45.455 0.00 0.00 0.00 3.51
849 856 2.472488 GCAAAAGTTGGTTCTTGCGATG 59.528 45.455 0.00 0.00 35.30 3.84
850 857 2.545742 GGCAAAAGTTGGTTCTTGCGAT 60.546 45.455 3.75 0.00 44.03 4.58
851 858 1.202359 GGCAAAAGTTGGTTCTTGCGA 60.202 47.619 3.75 0.00 44.03 5.10
852 859 1.208259 GGCAAAAGTTGGTTCTTGCG 58.792 50.000 3.75 0.00 44.03 4.85
853 860 1.581934 GGGCAAAAGTTGGTTCTTGC 58.418 50.000 1.35 1.35 42.71 4.01
854 861 1.202639 GGGGGCAAAAGTTGGTTCTTG 60.203 52.381 0.00 0.00 0.00 3.02
855 862 1.128200 GGGGGCAAAAGTTGGTTCTT 58.872 50.000 0.00 0.00 0.00 2.52
856 863 0.031616 TGGGGGCAAAAGTTGGTTCT 60.032 50.000 0.00 0.00 0.00 3.01
857 864 0.833949 TTGGGGGCAAAAGTTGGTTC 59.166 50.000 0.00 0.00 0.00 3.62
858 865 1.290134 TTTGGGGGCAAAAGTTGGTT 58.710 45.000 0.00 0.00 0.00 3.67
859 866 1.419762 GATTTGGGGGCAAAAGTTGGT 59.580 47.619 0.00 0.00 0.00 3.67
860 867 1.271325 GGATTTGGGGGCAAAAGTTGG 60.271 52.381 0.00 0.00 0.00 3.77
861 868 1.271325 GGGATTTGGGGGCAAAAGTTG 60.271 52.381 0.00 0.00 0.00 3.16
862 869 1.064003 GGGATTTGGGGGCAAAAGTT 58.936 50.000 0.00 0.00 0.00 2.66
863 870 0.840288 GGGGATTTGGGGGCAAAAGT 60.840 55.000 0.00 0.00 0.00 2.66
864 871 1.561769 GGGGGATTTGGGGGCAAAAG 61.562 60.000 0.00 0.00 0.00 2.27
865 872 1.540118 GGGGGATTTGGGGGCAAAA 60.540 57.895 0.00 0.00 0.00 2.44
866 873 2.123858 GGGGGATTTGGGGGCAAA 59.876 61.111 0.00 0.00 0.00 3.68
881 888 1.495148 GGGATTGGAGAGTTTAGGGGG 59.505 57.143 0.00 0.00 0.00 5.40
882 889 1.495148 GGGGATTGGAGAGTTTAGGGG 59.505 57.143 0.00 0.00 0.00 4.79
883 890 2.439880 GAGGGGATTGGAGAGTTTAGGG 59.560 54.545 0.00 0.00 0.00 3.53
884 891 2.439880 GGAGGGGATTGGAGAGTTTAGG 59.560 54.545 0.00 0.00 0.00 2.69
885 892 2.439880 GGGAGGGGATTGGAGAGTTTAG 59.560 54.545 0.00 0.00 0.00 1.85
886 893 2.488836 GGGAGGGGATTGGAGAGTTTA 58.511 52.381 0.00 0.00 0.00 2.01
887 894 1.299939 GGGAGGGGATTGGAGAGTTT 58.700 55.000 0.00 0.00 0.00 2.66
888 895 0.624795 GGGGAGGGGATTGGAGAGTT 60.625 60.000 0.00 0.00 0.00 3.01
889 896 1.004891 GGGGAGGGGATTGGAGAGT 59.995 63.158 0.00 0.00 0.00 3.24
890 897 1.772156 GGGGGAGGGGATTGGAGAG 60.772 68.421 0.00 0.00 0.00 3.20
891 898 2.376842 GGGGGAGGGGATTGGAGA 59.623 66.667 0.00 0.00 0.00 3.71
905 912 2.113986 GGGATCTCGCAATGGGGG 59.886 66.667 0.00 0.00 0.00 5.40
906 913 2.281070 CGGGATCTCGCAATGGGG 60.281 66.667 0.00 0.00 0.00 4.96
914 921 0.598680 GAATCTGGTGCGGGATCTCG 60.599 60.000 11.62 11.62 0.00 4.04
915 922 0.598680 CGAATCTGGTGCGGGATCTC 60.599 60.000 0.00 0.00 0.00 2.75
973 1219 3.963687 AAACGGCGGATTCGGGGAC 62.964 63.158 13.24 0.00 36.79 4.46
1038 1284 4.877619 AGATCGAGCTCCGCCGGA 62.878 66.667 5.05 5.37 38.37 5.14
1318 1574 0.319900 CAGTTGGTACGCAGTGAGCT 60.320 55.000 0.00 0.00 45.73 4.09
1319 1575 0.600255 ACAGTTGGTACGCAGTGAGC 60.600 55.000 0.00 0.00 45.73 4.26
1341 1616 1.450134 TTGCATCAGCTAGTGGCCG 60.450 57.895 0.00 0.00 43.05 6.13
1384 1662 0.969149 TCAGTGGAGCAGTACACAGG 59.031 55.000 0.00 0.00 39.99 4.00
1387 1665 1.734465 GCAATCAGTGGAGCAGTACAC 59.266 52.381 0.00 0.00 37.86 2.90
1439 1717 2.330440 TTCAGTTCAGTTCAGCAGCA 57.670 45.000 0.00 0.00 0.00 4.41
1583 1861 7.900299 TTGTTGTTGTTGTTGTTGTATATCG 57.100 32.000 0.00 0.00 0.00 2.92
1590 1868 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
1591 1869 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
1592 1870 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
1593 1871 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
1594 1872 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
1595 1873 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
1596 1874 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
1597 1875 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
1598 1876 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
1599 1877 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
1600 1878 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
1601 1879 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
1602 1880 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
1603 1881 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
1604 1882 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
1605 1883 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
1606 1884 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
1607 1885 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
1608 1886 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
1609 1887 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
1620 1898 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
1621 1899 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
1622 1900 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
1623 1901 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
1624 1902 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
1625 1903 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
1626 1904 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
1627 1905 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
1628 1906 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
1629 1907 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
1630 1908 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
1631 1909 2.468915 AGTTTCACCTCTAGCCTACCC 58.531 52.381 0.00 0.00 0.00 3.69
1632 1910 4.710865 ACTTAGTTTCACCTCTAGCCTACC 59.289 45.833 0.00 0.00 0.00 3.18
1633 1911 5.918426 ACTTAGTTTCACCTCTAGCCTAC 57.082 43.478 0.00 0.00 0.00 3.18
1635 1913 9.878737 TTATATACTTAGTTTCACCTCTAGCCT 57.121 33.333 0.00 0.00 0.00 4.58
1636 1914 9.911138 GTTATATACTTAGTTTCACCTCTAGCC 57.089 37.037 0.00 0.00 0.00 3.93
1673 1951 7.129504 ACCTCTGTGAATATAAGGGGAAAAGAT 59.870 37.037 0.00 0.00 34.95 2.40
1735 2013 3.623510 GCTGAAAGGACAATGTACTAGCC 59.376 47.826 7.47 0.00 0.00 3.93
1829 2107 5.782925 AGGAGTGGGAGAGAAACATACTAT 58.217 41.667 0.00 0.00 0.00 2.12
1912 2190 9.423061 GCCTCAACACTTTGACAAATATAAATT 57.577 29.630 0.05 0.00 36.79 1.82
1927 2205 3.652581 GCCCTTAGCCTCAACACTT 57.347 52.632 0.00 0.00 34.35 3.16
1963 2241 0.179073 ATCCTCGCATAGCACCACAC 60.179 55.000 0.00 0.00 0.00 3.82
1977 2255 5.200368 TGAAAAAGTGCAAAAGGATCCTC 57.800 39.130 16.52 2.55 0.00 3.71
1999 2277 5.651139 GCATGCACATATCTCCCAAGAATAT 59.349 40.000 14.21 0.00 34.49 1.28
2200 2483 9.032420 ACTAGTTTAGAGTTGAAAAGAAGAACG 57.968 33.333 0.00 0.00 0.00 3.95
2268 2551 3.555966 ACCCTGCTAATTATTGACAGGC 58.444 45.455 17.37 2.32 45.35 4.85
2459 2744 2.070783 GCATTTCCACGGTTAGTCGAA 58.929 47.619 0.00 0.00 0.00 3.71
2678 2966 4.863925 GGAGGCGAGACGAGCTGC 62.864 72.222 0.00 0.00 34.52 5.25
2888 3188 4.018779 CCTGGTTGGTAAAGTGGATAAGGA 60.019 45.833 0.00 0.00 0.00 3.36
2996 3296 0.034476 TCTTCCAGTGAGCAGCAGTG 59.966 55.000 0.00 7.28 45.62 3.66
3065 3365 1.859302 CAGTAGGGACCTCTTGCTCT 58.141 55.000 0.00 0.00 0.00 4.09
3245 3563 0.679002 CACTGAGCCTCCCACCATTG 60.679 60.000 0.00 0.00 0.00 2.82
3290 3611 0.249073 CCCTGTATGCTTCGACCTCG 60.249 60.000 0.00 0.00 41.45 4.63
3296 3617 2.229039 CGATGCCCTGTATGCTTCG 58.771 57.895 6.22 6.22 45.56 3.79
3308 3629 0.240945 CACTGAACCCAAACGATGCC 59.759 55.000 0.00 0.00 0.00 4.40
3314 3635 2.227388 CTCATCTGCACTGAACCCAAAC 59.773 50.000 0.00 0.00 0.00 2.93
3320 3641 2.983229 ACCATCTCATCTGCACTGAAC 58.017 47.619 0.00 0.00 0.00 3.18
3329 3650 3.027412 AGTGCTCGTAACCATCTCATCT 58.973 45.455 0.00 0.00 0.00 2.90
3418 3739 1.336755 CTGTGTTGTTAACAGGGGCAC 59.663 52.381 18.91 18.91 43.10 5.01
3427 3748 3.804036 CACACCTCCTCTGTGTTGTTAA 58.196 45.455 0.00 0.00 44.19 2.01
3431 3752 0.886490 GGCACACCTCCTCTGTGTTG 60.886 60.000 0.00 0.00 44.19 3.33
3464 3785 3.135348 TCTGAACCTCATGATTAGGCAGG 59.865 47.826 0.00 0.00 37.67 4.85
3515 3836 5.515626 GCTTGTCATCATCTCTTTTGCATTC 59.484 40.000 0.00 0.00 0.00 2.67
3548 3869 0.892814 GAAGCTGGTCTGCTGCCTTT 60.893 55.000 0.00 0.00 43.24 3.11
3674 4007 7.432869 TGAGTGAAGAAAACCAACAATATTGG 58.567 34.615 19.37 6.23 44.91 3.16
3682 4015 5.560966 TGTTCTGAGTGAAGAAAACCAAC 57.439 39.130 0.00 0.00 37.90 3.77
3683 4016 6.152661 ACATTGTTCTGAGTGAAGAAAACCAA 59.847 34.615 0.00 0.00 40.55 3.67
3685 4018 6.136541 ACATTGTTCTGAGTGAAGAAAACC 57.863 37.500 0.00 0.00 40.55 3.27
3762 4097 2.063266 CATTGCACAACACCAGCATTC 58.937 47.619 0.00 0.00 38.19 2.67
3771 4106 2.955477 TGCAGAAACATTGCACAACA 57.045 40.000 0.00 0.00 45.89 3.33
3789 4124 1.547372 CTGGGGTTGGAAGCAAGATTG 59.453 52.381 0.00 0.00 0.00 2.67
3790 4125 1.928868 CTGGGGTTGGAAGCAAGATT 58.071 50.000 0.00 0.00 0.00 2.40
3791 4126 0.613012 GCTGGGGTTGGAAGCAAGAT 60.613 55.000 0.00 0.00 36.91 2.40
3792 4127 1.228552 GCTGGGGTTGGAAGCAAGA 60.229 57.895 0.00 0.00 36.91 3.02
3793 4128 2.278330 GGCTGGGGTTGGAAGCAAG 61.278 63.158 0.00 0.00 38.73 4.01
3794 4129 2.203625 GGCTGGGGTTGGAAGCAA 60.204 61.111 0.00 0.00 38.73 3.91
3795 4130 2.384933 AATGGCTGGGGTTGGAAGCA 62.385 55.000 0.00 0.00 38.73 3.91
3796 4131 1.607801 GAATGGCTGGGGTTGGAAGC 61.608 60.000 0.00 0.00 36.17 3.86
3797 4132 0.251742 TGAATGGCTGGGGTTGGAAG 60.252 55.000 0.00 0.00 0.00 3.46
3798 4133 0.413037 ATGAATGGCTGGGGTTGGAA 59.587 50.000 0.00 0.00 0.00 3.53
3799 4134 0.413037 AATGAATGGCTGGGGTTGGA 59.587 50.000 0.00 0.00 0.00 3.53
3800 4135 0.826062 GAATGAATGGCTGGGGTTGG 59.174 55.000 0.00 0.00 0.00 3.77
3801 4136 1.559368 TGAATGAATGGCTGGGGTTG 58.441 50.000 0.00 0.00 0.00 3.77
3802 4137 2.555732 ATGAATGAATGGCTGGGGTT 57.444 45.000 0.00 0.00 0.00 4.11
3829 4164 9.871238 GATTCTGGTGTAAAAAGATCAGTACTA 57.129 33.333 0.00 0.00 0.00 1.82
3830 4165 8.375506 TGATTCTGGTGTAAAAAGATCAGTACT 58.624 33.333 0.00 0.00 0.00 2.73
3831 4166 8.547967 TGATTCTGGTGTAAAAAGATCAGTAC 57.452 34.615 0.00 0.00 0.00 2.73
3832 4167 9.739276 AATGATTCTGGTGTAAAAAGATCAGTA 57.261 29.630 0.00 0.00 0.00 2.74
3833 4168 8.641498 AATGATTCTGGTGTAAAAAGATCAGT 57.359 30.769 0.00 0.00 0.00 3.41
3845 4180 9.034800 ACCAACAAATATTAATGATTCTGGTGT 57.965 29.630 0.00 0.00 0.00 4.16
3846 4181 9.874205 AACCAACAAATATTAATGATTCTGGTG 57.126 29.630 13.55 7.17 0.00 4.17
3859 4194 9.883142 TTTGAGTGAAGAAAACCAACAAATATT 57.117 25.926 0.00 0.00 0.00 1.28
3860 4195 9.883142 TTTTGAGTGAAGAAAACCAACAAATAT 57.117 25.926 0.00 0.00 0.00 1.28
3861 4196 9.883142 ATTTTGAGTGAAGAAAACCAACAAATA 57.117 25.926 0.00 0.00 0.00 1.40
3862 4197 8.791327 ATTTTGAGTGAAGAAAACCAACAAAT 57.209 26.923 0.00 0.00 0.00 2.32
3863 4198 9.712305 TTATTTTGAGTGAAGAAAACCAACAAA 57.288 25.926 0.00 0.00 0.00 2.83
3864 4199 9.883142 ATTATTTTGAGTGAAGAAAACCAACAA 57.117 25.926 0.00 0.00 0.00 2.83
3865 4200 9.311916 CATTATTTTGAGTGAAGAAAACCAACA 57.688 29.630 0.00 0.00 0.00 3.33
3866 4201 9.313118 ACATTATTTTGAGTGAAGAAAACCAAC 57.687 29.630 0.00 0.00 0.00 3.77
3901 4236 9.513727 GGTACTAAGTATAGTTCAAGTTACTGC 57.486 37.037 0.00 0.00 42.39 4.40
3911 4246 7.742556 ATGGAGACGGTACTAAGTATAGTTC 57.257 40.000 0.00 0.00 42.39 3.01
3918 4253 3.117587 AGGCTATGGAGACGGTACTAAGT 60.118 47.826 0.00 0.00 34.92 2.24
3919 4254 3.253677 CAGGCTATGGAGACGGTACTAAG 59.746 52.174 0.00 0.00 34.92 2.18
3923 4258 1.688772 TCAGGCTATGGAGACGGTAC 58.311 55.000 0.00 0.00 34.92 3.34
3924 4259 2.029623 GTTCAGGCTATGGAGACGGTA 58.970 52.381 0.00 0.00 34.92 4.02
3927 4262 2.166459 TCAAGTTCAGGCTATGGAGACG 59.834 50.000 0.00 0.00 34.92 4.18
3929 4264 5.441718 AATTCAAGTTCAGGCTATGGAGA 57.558 39.130 0.00 0.00 0.00 3.71
3931 4266 4.635765 CGAAATTCAAGTTCAGGCTATGGA 59.364 41.667 0.00 0.00 0.00 3.41
3932 4267 4.201950 CCGAAATTCAAGTTCAGGCTATGG 60.202 45.833 0.00 0.00 0.00 2.74
3937 4272 2.293399 ACACCGAAATTCAAGTTCAGGC 59.707 45.455 7.93 0.00 0.00 4.85
3946 4281 3.033368 TCGACATGACACCGAAATTCA 57.967 42.857 0.00 0.00 0.00 2.57
3947 4282 3.370978 ACATCGACATGACACCGAAATTC 59.629 43.478 0.00 0.00 35.87 2.17
3948 4283 3.334691 ACATCGACATGACACCGAAATT 58.665 40.909 0.00 0.00 35.87 1.82
3951 4286 2.448926 AACATCGACATGACACCGAA 57.551 45.000 0.00 0.00 35.87 4.30
3952 4287 2.029380 AGAAACATCGACATGACACCGA 60.029 45.455 0.00 3.20 36.72 4.69
3953 4288 2.092681 CAGAAACATCGACATGACACCG 59.907 50.000 0.00 0.00 33.72 4.94
3955 4290 2.480037 TGCAGAAACATCGACATGACAC 59.520 45.455 0.00 0.00 33.72 3.67
3959 4294 4.611310 AGATTGCAGAAACATCGACATG 57.389 40.909 0.00 0.00 35.92 3.21
3996 4333 1.271163 TGTTCCTGCGGTAAGAAAGGG 60.271 52.381 0.00 0.00 0.00 3.95
4048 4385 3.447040 GGCAGTCTTTTGCAGCCA 58.553 55.556 6.04 0.00 45.86 4.75
4055 4392 3.094572 CCTGAATGGATGGCAGTCTTTT 58.905 45.455 0.00 0.00 38.35 2.27
4150 4487 4.415332 TGAACTCGACCTCCGCGC 62.415 66.667 0.00 0.00 38.37 6.86
4270 4741 7.577807 GCTCACTCTTCAACTTACTTATCCTGA 60.578 40.741 0.00 0.00 0.00 3.86
4332 4803 2.617308 TCTAACACCTCCGATCGATGAC 59.383 50.000 18.66 0.00 0.00 3.06
4333 4804 2.927028 TCTAACACCTCCGATCGATGA 58.073 47.619 18.66 5.19 0.00 2.92
4334 4805 3.066900 ACTTCTAACACCTCCGATCGATG 59.933 47.826 18.66 11.49 0.00 3.84
4336 4807 2.719739 ACTTCTAACACCTCCGATCGA 58.280 47.619 18.66 1.60 0.00 3.59
4337 4808 4.096081 ACTTACTTCTAACACCTCCGATCG 59.904 45.833 8.51 8.51 0.00 3.69
4338 4809 5.579564 ACTTACTTCTAACACCTCCGATC 57.420 43.478 0.00 0.00 0.00 3.69
4339 4810 7.560626 AGATTACTTACTTCTAACACCTCCGAT 59.439 37.037 0.00 0.00 0.00 4.18
4539 5013 5.239351 CCTTTCATTTCATTCCATTGTGCA 58.761 37.500 0.00 0.00 0.00 4.57
4548 5022 2.667969 GCAACGCCCTTTCATTTCATTC 59.332 45.455 0.00 0.00 0.00 2.67
4673 5174 9.971744 GATTAATTTTACCAACATTGTCAATGC 57.028 29.630 22.79 0.22 42.69 3.56
4684 5185 9.523730 GCGTTCATTTTGATTAATTTTACCAAC 57.476 29.630 0.00 0.00 0.00 3.77
4685 5186 8.428536 CGCGTTCATTTTGATTAATTTTACCAA 58.571 29.630 0.00 0.00 0.00 3.67
4700 5201 0.517316 GGTCAGCTCGCGTTCATTTT 59.483 50.000 5.77 0.00 0.00 1.82
4708 5209 1.519234 TATGCAAGGTCAGCTCGCG 60.519 57.895 0.00 0.00 0.00 5.87
4711 5212 3.338249 TCAAAGTATGCAAGGTCAGCTC 58.662 45.455 0.00 0.00 0.00 4.09
4727 5228 7.473027 AGCACACTGATTCAAAATTTCAAAG 57.527 32.000 0.00 0.00 0.00 2.77
4728 5229 7.765360 AGAAGCACACTGATTCAAAATTTCAAA 59.235 29.630 3.29 0.00 44.52 2.69
4729 5230 7.223193 CAGAAGCACACTGATTCAAAATTTCAA 59.777 33.333 3.29 0.00 44.52 2.69
4730 5231 6.698329 CAGAAGCACACTGATTCAAAATTTCA 59.302 34.615 3.29 0.00 44.52 2.69
4731 5232 6.346359 GCAGAAGCACACTGATTCAAAATTTC 60.346 38.462 8.56 0.00 44.52 2.17
4732 5233 5.464389 GCAGAAGCACACTGATTCAAAATTT 59.536 36.000 8.56 0.00 44.52 1.82
4733 5234 4.986659 GCAGAAGCACACTGATTCAAAATT 59.013 37.500 8.56 0.00 44.52 1.82
4734 5235 4.280174 AGCAGAAGCACACTGATTCAAAAT 59.720 37.500 8.56 0.00 44.52 1.82
4735 5236 3.633525 AGCAGAAGCACACTGATTCAAAA 59.366 39.130 8.56 0.00 44.52 2.44
4828 5334 8.236586 TCTGTGAGAACAAATGCATTATGTAAC 58.763 33.333 13.39 14.70 0.00 2.50
4829 5335 8.334263 TCTGTGAGAACAAATGCATTATGTAA 57.666 30.769 13.39 4.44 0.00 2.41
4831 5337 6.432162 ACTCTGTGAGAACAAATGCATTATGT 59.568 34.615 13.39 15.40 33.32 2.29
4832 5338 6.849502 ACTCTGTGAGAACAAATGCATTATG 58.150 36.000 13.39 14.79 33.32 1.90
4833 5339 7.310664 CAACTCTGTGAGAACAAATGCATTAT 58.689 34.615 13.39 0.84 33.32 1.28
4834 5340 6.671190 CAACTCTGTGAGAACAAATGCATTA 58.329 36.000 13.39 0.00 33.32 1.90
4836 5342 4.558095 GCAACTCTGTGAGAACAAATGCAT 60.558 41.667 0.00 0.00 33.32 3.96
4839 5345 4.556942 TGCAACTCTGTGAGAACAAATG 57.443 40.909 1.25 0.00 33.32 2.32
4841 5347 5.581126 AATTGCAACTCTGTGAGAACAAA 57.419 34.783 0.00 0.00 33.32 2.83
4846 5352 5.368145 AGTACAAATTGCAACTCTGTGAGA 58.632 37.500 16.28 0.00 33.32 3.27
4847 5353 5.679734 AGTACAAATTGCAACTCTGTGAG 57.320 39.130 16.28 0.00 35.52 3.51
4848 5354 6.293407 GCTAAGTACAAATTGCAACTCTGTGA 60.293 38.462 16.28 2.94 0.00 3.58
4849 5355 5.853282 GCTAAGTACAAATTGCAACTCTGTG 59.147 40.000 16.28 4.10 0.00 3.66
4872 5378 6.949578 ACAAATGCATTATGTAACAACAGC 57.050 33.333 13.39 0.00 0.00 4.40
4876 5382 8.355913 TGTGAGAACAAATGCATTATGTAACAA 58.644 29.630 13.39 4.73 0.00 2.83
4904 5410 1.348538 CGCCGCGTACATTGTTCAGA 61.349 55.000 4.92 0.00 0.00 3.27
4934 5440 7.507616 CCTAACCCTAACCCAATTGCATAAATA 59.492 37.037 0.00 0.00 0.00 1.40
4977 5483 2.124411 GCTGGAGGTTTCAGGGGTATA 58.876 52.381 0.00 0.00 33.16 1.47
4978 5484 0.919710 GCTGGAGGTTTCAGGGGTAT 59.080 55.000 0.00 0.00 33.16 2.73
4979 5485 0.178873 AGCTGGAGGTTTCAGGGGTA 60.179 55.000 0.00 0.00 33.16 3.69
4980 5486 1.464198 AGCTGGAGGTTTCAGGGGT 60.464 57.895 0.00 0.00 33.16 4.95
5053 5570 3.900601 AGAGATGTGGTTGAGACTTGAGT 59.099 43.478 0.00 0.00 0.00 3.41
5202 8571 4.675114 CCAATTGTTTCTTTGTAGACACGC 59.325 41.667 4.43 0.00 34.49 5.34
5219 8588 3.068590 AGCTGGAGTGAAACAACCAATTG 59.931 43.478 0.00 0.00 42.82 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.