Multiple sequence alignment - TraesCS5D01G018500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G018500 chr5D 100.000 4988 0 0 1 4988 10772429 10777416 0.000000e+00 9212.0
1 TraesCS5D01G018500 chr5B 96.129 3720 98 26 965 4649 11308946 11305238 0.000000e+00 6030.0
2 TraesCS5D01G018500 chr5B 83.838 396 53 4 199 585 288391716 288392109 2.840000e-97 366.0
3 TraesCS5D01G018500 chr5B 90.780 141 5 3 609 741 11309217 11309077 1.100000e-41 182.0
4 TraesCS5D01G018500 chr5B 84.375 160 13 4 46 194 11309376 11309218 4.020000e-31 147.0
5 TraesCS5D01G018500 chr5B 93.939 66 0 1 813 874 11309049 11308984 4.110000e-16 97.1
6 TraesCS5D01G018500 chr5A 95.281 3539 91 33 779 4280 8907348 8903849 0.000000e+00 5541.0
7 TraesCS5D01G018500 chr5A 84.375 352 37 13 4306 4650 8903546 8903206 3.720000e-86 329.0
8 TraesCS5D01G018500 chr5A 88.202 178 13 2 599 768 8907919 8907742 6.550000e-49 206.0
9 TraesCS5D01G018500 chr5A 84.746 59 7 2 74 130 514007904 514007962 1.940000e-04 58.4
10 TraesCS5D01G018500 chr7B 84.712 399 45 7 197 585 491146600 491146992 7.830000e-103 385.0
11 TraesCS5D01G018500 chr7B 84.091 88 12 2 3438 3524 565577254 565577340 3.200000e-12 84.2
12 TraesCS5D01G018500 chr7B 80.952 105 18 2 3587 3690 74598427 74598324 1.150000e-11 82.4
13 TraesCS5D01G018500 chr2D 85.434 357 43 6 232 581 608864494 608864140 3.670000e-96 363.0
14 TraesCS5D01G018500 chr4D 83.471 363 49 4 236 588 493927938 493928299 1.340000e-85 327.0
15 TraesCS5D01G018500 chr4D 79.221 154 26 6 3397 3547 397094746 397094596 8.830000e-18 102.0
16 TraesCS5D01G018500 chr2B 81.796 401 59 7 200 588 453081858 453081460 1.730000e-84 324.0
17 TraesCS5D01G018500 chr2B 79.487 117 24 0 3205 3321 576586346 576586230 3.200000e-12 84.2
18 TraesCS5D01G018500 chr4A 81.795 390 56 11 198 585 714558061 714558437 3.750000e-81 313.0
19 TraesCS5D01G018500 chr4A 84.921 252 18 11 351 585 656772131 656772379 2.320000e-58 237.0
20 TraesCS5D01G018500 chr4A 79.221 154 26 6 3397 3547 54107620 54107470 8.830000e-18 102.0
21 TraesCS5D01G018500 chr4A 78.322 143 27 2 3582 3722 681917977 681917837 6.880000e-14 89.8
22 TraesCS5D01G018500 chr7D 81.959 388 46 5 200 585 485099855 485100220 1.740000e-79 307.0
23 TraesCS5D01G018500 chr7D 84.091 88 12 2 3438 3524 528080080 528080166 3.200000e-12 84.2
24 TraesCS5D01G018500 chr7D 80.952 105 18 2 3587 3690 115048385 115048282 1.150000e-11 82.4
25 TraesCS5D01G018500 chrUn 84.921 252 18 11 351 585 245140214 245140462 2.320000e-58 237.0
26 TraesCS5D01G018500 chrUn 84.524 252 19 11 351 585 371970704 371970456 1.080000e-56 231.0
27 TraesCS5D01G018500 chrUn 81.481 135 25 0 3194 3328 188195580 188195446 1.470000e-20 111.0
28 TraesCS5D01G018500 chrUn 97.143 35 1 0 3272 3306 270733784 270733750 5.390000e-05 60.2
29 TraesCS5D01G018500 chrUn 97.143 35 1 0 3272 3306 282197154 282197188 5.390000e-05 60.2
30 TraesCS5D01G018500 chr3B 81.250 128 24 0 3194 3321 207123048 207123175 2.460000e-18 104.0
31 TraesCS5D01G018500 chr3B 90.000 70 7 0 3444 3513 142722367 142722298 1.910000e-14 91.6
32 TraesCS5D01G018500 chr3B 78.151 119 24 2 3628 3745 72953293 72953410 1.930000e-09 75.0
33 TraesCS5D01G018500 chr3D 87.654 81 10 0 3444 3524 93481504 93481584 1.480000e-15 95.3
34 TraesCS5D01G018500 chr3D 78.151 119 24 2 3628 3745 46583435 46583552 1.930000e-09 75.0
35 TraesCS5D01G018500 chr3A 90.000 70 7 0 3444 3513 546572366 546572297 1.910000e-14 91.6
36 TraesCS5D01G018500 chr3A 79.646 113 21 2 3634 3745 57944762 57944651 4.140000e-11 80.5
37 TraesCS5D01G018500 chr1D 93.333 45 3 0 3635 3679 202945632 202945588 3.220000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G018500 chr5D 10772429 10777416 4987 False 9212.000000 9212 100.00000 1 4988 1 chr5D.!!$F1 4987
1 TraesCS5D01G018500 chr5B 11305238 11309376 4138 True 1614.025000 6030 91.30575 46 4649 4 chr5B.!!$R1 4603
2 TraesCS5D01G018500 chr5A 8903206 8907919 4713 True 2025.333333 5541 89.28600 599 4650 3 chr5A.!!$R1 4051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 778 0.106521 GCTGGAGAGGAGATGAAGCC 59.893 60.000 0.00 0.0 0.0 4.35 F
2031 2441 0.318784 ACTCCGACTTCAACGTGCTC 60.319 55.000 0.00 0.0 0.0 4.26 F
2274 2684 1.003812 TCCTACAACCATTTCACCGGG 59.996 52.381 6.32 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2373 2783 1.602237 GATCTTCACGAGGCCCCAA 59.398 57.895 0.00 0.00 0.00 4.12 R
3161 3586 2.750637 GGCTGTCGTCCTCCTCGA 60.751 66.667 0.00 0.00 34.91 4.04 R
4272 4727 3.639538 CAATGCAGCTGCTCCATTTATC 58.360 45.455 36.61 6.97 42.66 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.500509 AAAAAGTCGATTGCGCCAAA 57.499 40.000 4.18 0.00 37.46 3.28
35 36 2.500509 AAAAGTCGATTGCGCCAAAA 57.499 40.000 4.18 0.00 37.46 2.44
36 37 2.500509 AAAGTCGATTGCGCCAAAAA 57.499 40.000 4.18 0.00 37.46 1.94
80 81 2.364970 CCCAAGAAGCCATGAAACACAA 59.635 45.455 0.00 0.00 0.00 3.33
92 93 6.105333 CCATGAAACACAAGGTGAAAAAGAA 58.895 36.000 2.98 0.00 36.96 2.52
94 95 7.201548 CCATGAAACACAAGGTGAAAAAGAAAG 60.202 37.037 2.98 0.00 36.96 2.62
95 96 6.162777 TGAAACACAAGGTGAAAAAGAAAGG 58.837 36.000 2.98 0.00 36.96 3.11
96 97 5.738619 AACACAAGGTGAAAAAGAAAGGT 57.261 34.783 2.98 0.00 36.96 3.50
101 102 6.256321 CACAAGGTGAAAAAGAAAGGTGAATG 59.744 38.462 0.00 0.00 35.23 2.67
132 133 6.633500 AAGAATCAACGGTCAGAAAAATCA 57.367 33.333 0.00 0.00 0.00 2.57
142 143 5.048782 CGGTCAGAAAAATCAACTCATCCAA 60.049 40.000 0.00 0.00 0.00 3.53
143 144 6.514870 CGGTCAGAAAAATCAACTCATCCAAA 60.515 38.462 0.00 0.00 0.00 3.28
190 201 4.884164 AGCTAAAGTGGAAGAATACATGGC 59.116 41.667 0.00 0.00 0.00 4.40
194 205 6.610075 AAAGTGGAAGAATACATGGCAATT 57.390 33.333 0.00 0.00 0.00 2.32
195 206 6.610075 AAGTGGAAGAATACATGGCAATTT 57.390 33.333 0.00 0.00 0.00 1.82
196 207 5.969423 AGTGGAAGAATACATGGCAATTTG 58.031 37.500 0.00 0.00 0.00 2.32
197 208 5.105228 AGTGGAAGAATACATGGCAATTTGG 60.105 40.000 0.00 0.00 0.00 3.28
198 209 4.161942 TGGAAGAATACATGGCAATTTGGG 59.838 41.667 0.00 0.00 0.00 4.12
199 210 4.443315 GGAAGAATACATGGCAATTTGGGG 60.443 45.833 0.00 0.00 0.00 4.96
200 211 3.040477 AGAATACATGGCAATTTGGGGG 58.960 45.455 0.00 0.00 0.00 5.40
201 212 2.864885 ATACATGGCAATTTGGGGGA 57.135 45.000 0.00 0.00 0.00 4.81
202 213 2.630889 TACATGGCAATTTGGGGGAA 57.369 45.000 0.00 0.00 0.00 3.97
203 214 1.739750 ACATGGCAATTTGGGGGAAA 58.260 45.000 0.00 0.00 0.00 3.13
204 215 1.629861 ACATGGCAATTTGGGGGAAAG 59.370 47.619 0.00 0.00 0.00 2.62
205 216 1.629861 CATGGCAATTTGGGGGAAAGT 59.370 47.619 0.00 0.00 0.00 2.66
206 217 2.704190 TGGCAATTTGGGGGAAAGTA 57.296 45.000 0.00 0.00 0.00 2.24
207 218 3.197927 TGGCAATTTGGGGGAAAGTAT 57.802 42.857 0.00 0.00 0.00 2.12
208 219 3.525862 TGGCAATTTGGGGGAAAGTATT 58.474 40.909 0.00 0.00 0.00 1.89
209 220 4.689062 TGGCAATTTGGGGGAAAGTATTA 58.311 39.130 0.00 0.00 0.00 0.98
210 221 4.714308 TGGCAATTTGGGGGAAAGTATTAG 59.286 41.667 0.00 0.00 0.00 1.73
211 222 4.100963 GGCAATTTGGGGGAAAGTATTAGG 59.899 45.833 0.00 0.00 0.00 2.69
212 223 4.714802 GCAATTTGGGGGAAAGTATTAGGT 59.285 41.667 0.00 0.00 0.00 3.08
213 224 5.395214 GCAATTTGGGGGAAAGTATTAGGTG 60.395 44.000 0.00 0.00 0.00 4.00
214 225 3.375647 TTGGGGGAAAGTATTAGGTGC 57.624 47.619 0.00 0.00 0.00 5.01
215 226 2.568979 TGGGGGAAAGTATTAGGTGCT 58.431 47.619 0.00 0.00 0.00 4.40
216 227 3.738434 TGGGGGAAAGTATTAGGTGCTA 58.262 45.455 0.00 0.00 0.00 3.49
217 228 3.457012 TGGGGGAAAGTATTAGGTGCTAC 59.543 47.826 0.00 0.00 0.00 3.58
218 229 3.181447 GGGGGAAAGTATTAGGTGCTACC 60.181 52.174 0.00 0.00 38.99 3.18
219 230 3.457012 GGGGAAAGTATTAGGTGCTACCA 59.543 47.826 7.86 0.00 41.95 3.25
220 231 4.444449 GGGGAAAGTATTAGGTGCTACCAG 60.444 50.000 7.86 0.00 41.95 4.00
221 232 4.127907 GGAAAGTATTAGGTGCTACCAGC 58.872 47.826 7.86 0.00 41.95 4.85
222 233 3.840124 AAGTATTAGGTGCTACCAGCC 57.160 47.619 7.86 0.00 41.95 4.85
223 234 2.047830 AGTATTAGGTGCTACCAGCCC 58.952 52.381 7.86 0.00 41.95 5.19
224 235 2.047830 GTATTAGGTGCTACCAGCCCT 58.952 52.381 11.35 11.35 41.95 5.19
225 236 1.596496 ATTAGGTGCTACCAGCCCTT 58.404 50.000 11.72 0.00 41.95 3.95
226 237 2.257391 TTAGGTGCTACCAGCCCTTA 57.743 50.000 11.72 3.06 41.95 2.69
227 238 1.492764 TAGGTGCTACCAGCCCTTAC 58.507 55.000 11.72 0.00 41.95 2.34
228 239 0.546747 AGGTGCTACCAGCCCTTACA 60.547 55.000 7.86 0.00 41.95 2.41
229 240 0.546598 GGTGCTACCAGCCCTTACAT 59.453 55.000 0.00 0.00 41.51 2.29
230 241 1.668419 GTGCTACCAGCCCTTACATG 58.332 55.000 0.00 0.00 41.51 3.21
231 242 0.107214 TGCTACCAGCCCTTACATGC 60.107 55.000 0.00 0.00 41.51 4.06
232 243 0.181350 GCTACCAGCCCTTACATGCT 59.819 55.000 0.00 0.00 38.67 3.79
233 244 1.416401 GCTACCAGCCCTTACATGCTA 59.584 52.381 0.00 0.00 35.69 3.49
234 245 2.807108 GCTACCAGCCCTTACATGCTAC 60.807 54.545 0.00 0.00 35.69 3.58
235 246 0.546598 ACCAGCCCTTACATGCTACC 59.453 55.000 0.00 0.00 35.69 3.18
236 247 0.546122 CCAGCCCTTACATGCTACCA 59.454 55.000 0.00 0.00 35.69 3.25
237 248 1.143684 CCAGCCCTTACATGCTACCAT 59.856 52.381 0.00 0.00 35.69 3.55
250 261 4.835284 TGCTACCATGATACCAACTTCA 57.165 40.909 0.00 0.00 0.00 3.02
251 262 5.172687 TGCTACCATGATACCAACTTCAA 57.827 39.130 0.00 0.00 0.00 2.69
252 263 5.565509 TGCTACCATGATACCAACTTCAAA 58.434 37.500 0.00 0.00 0.00 2.69
253 264 6.007076 TGCTACCATGATACCAACTTCAAAA 58.993 36.000 0.00 0.00 0.00 2.44
254 265 6.491745 TGCTACCATGATACCAACTTCAAAAA 59.508 34.615 0.00 0.00 0.00 1.94
255 266 7.178274 TGCTACCATGATACCAACTTCAAAAAT 59.822 33.333 0.00 0.00 0.00 1.82
256 267 8.034804 GCTACCATGATACCAACTTCAAAAATT 58.965 33.333 0.00 0.00 0.00 1.82
257 268 9.357652 CTACCATGATACCAACTTCAAAAATTG 57.642 33.333 0.00 0.00 0.00 2.32
258 269 7.961351 ACCATGATACCAACTTCAAAAATTGA 58.039 30.769 0.00 0.00 38.04 2.57
259 270 8.428063 ACCATGATACCAACTTCAAAAATTGAA 58.572 29.630 5.50 5.50 46.68 2.69
311 322 9.912634 AAAAATTCATGAATGTTGACGACTTAT 57.087 25.926 21.90 3.13 29.19 1.73
315 326 8.940768 TTCATGAATGTTGACGACTTATATGA 57.059 30.769 3.38 0.00 0.00 2.15
316 327 8.352752 TCATGAATGTTGACGACTTATATGAC 57.647 34.615 0.00 0.00 0.00 3.06
317 328 6.806120 TGAATGTTGACGACTTATATGACG 57.194 37.500 8.50 8.50 0.00 4.35
318 329 6.557110 TGAATGTTGACGACTTATATGACGA 58.443 36.000 15.18 0.00 0.00 4.20
319 330 6.471198 TGAATGTTGACGACTTATATGACGAC 59.529 38.462 15.18 10.49 0.00 4.34
320 331 5.299582 TGTTGACGACTTATATGACGACA 57.700 39.130 15.18 12.53 0.00 4.35
321 332 5.329493 TGTTGACGACTTATATGACGACAG 58.671 41.667 15.18 0.00 33.29 3.51
322 333 3.948851 TGACGACTTATATGACGACAGC 58.051 45.455 15.18 4.80 0.00 4.40
323 334 3.242969 TGACGACTTATATGACGACAGCC 60.243 47.826 15.18 2.85 0.00 4.85
324 335 2.034305 ACGACTTATATGACGACAGCCC 59.966 50.000 15.18 0.00 0.00 5.19
325 336 2.607282 CGACTTATATGACGACAGCCCC 60.607 54.545 4.87 0.00 0.00 5.80
326 337 2.628657 GACTTATATGACGACAGCCCCT 59.371 50.000 0.00 0.00 0.00 4.79
327 338 3.825014 GACTTATATGACGACAGCCCCTA 59.175 47.826 0.00 0.00 0.00 3.53
328 339 4.220724 ACTTATATGACGACAGCCCCTAA 58.779 43.478 0.00 0.00 0.00 2.69
329 340 4.652421 ACTTATATGACGACAGCCCCTAAA 59.348 41.667 0.00 0.00 0.00 1.85
330 341 5.129815 ACTTATATGACGACAGCCCCTAAAA 59.870 40.000 0.00 0.00 0.00 1.52
331 342 2.871096 ATGACGACAGCCCCTAAAAA 57.129 45.000 0.00 0.00 0.00 1.94
363 374 9.941664 GATGAAAATTTGACATACACATAGAGG 57.058 33.333 9.93 0.00 0.00 3.69
364 375 9.685276 ATGAAAATTTGACATACACATAGAGGA 57.315 29.630 8.68 0.00 0.00 3.71
365 376 9.513906 TGAAAATTTGACATACACATAGAGGAA 57.486 29.630 0.00 0.00 0.00 3.36
366 377 9.774742 GAAAATTTGACATACACATAGAGGAAC 57.225 33.333 0.00 0.00 0.00 3.62
367 378 8.862325 AAATTTGACATACACATAGAGGAACA 57.138 30.769 0.00 0.00 0.00 3.18
368 379 8.862325 AATTTGACATACACATAGAGGAACAA 57.138 30.769 0.00 0.00 0.00 2.83
369 380 8.862325 ATTTGACATACACATAGAGGAACAAA 57.138 30.769 0.00 0.00 0.00 2.83
370 381 8.684386 TTTGACATACACATAGAGGAACAAAA 57.316 30.769 0.00 0.00 0.00 2.44
371 382 7.905604 TGACATACACATAGAGGAACAAAAG 57.094 36.000 0.00 0.00 0.00 2.27
372 383 7.676004 TGACATACACATAGAGGAACAAAAGA 58.324 34.615 0.00 0.00 0.00 2.52
373 384 7.819415 TGACATACACATAGAGGAACAAAAGAG 59.181 37.037 0.00 0.00 0.00 2.85
374 385 7.907389 ACATACACATAGAGGAACAAAAGAGA 58.093 34.615 0.00 0.00 0.00 3.10
375 386 7.819900 ACATACACATAGAGGAACAAAAGAGAC 59.180 37.037 0.00 0.00 0.00 3.36
376 387 6.174720 ACACATAGAGGAACAAAAGAGACA 57.825 37.500 0.00 0.00 0.00 3.41
377 388 6.591935 ACACATAGAGGAACAAAAGAGACAA 58.408 36.000 0.00 0.00 0.00 3.18
378 389 7.054124 ACACATAGAGGAACAAAAGAGACAAA 58.946 34.615 0.00 0.00 0.00 2.83
379 390 7.721399 ACACATAGAGGAACAAAAGAGACAAAT 59.279 33.333 0.00 0.00 0.00 2.32
380 391 8.233190 CACATAGAGGAACAAAAGAGACAAATC 58.767 37.037 0.00 0.00 0.00 2.17
381 392 7.391833 ACATAGAGGAACAAAAGAGACAAATCC 59.608 37.037 0.00 0.00 0.00 3.01
382 393 5.694995 AGAGGAACAAAAGAGACAAATCCA 58.305 37.500 0.00 0.00 0.00 3.41
383 394 6.310149 AGAGGAACAAAAGAGACAAATCCAT 58.690 36.000 0.00 0.00 0.00 3.41
384 395 6.208204 AGAGGAACAAAAGAGACAAATCCATG 59.792 38.462 0.00 0.00 0.00 3.66
385 396 6.070656 AGGAACAAAAGAGACAAATCCATGA 58.929 36.000 0.00 0.00 0.00 3.07
386 397 6.723052 AGGAACAAAAGAGACAAATCCATGAT 59.277 34.615 0.00 0.00 0.00 2.45
387 398 6.810182 GGAACAAAAGAGACAAATCCATGATG 59.190 38.462 0.00 0.00 0.00 3.07
388 399 7.309377 GGAACAAAAGAGACAAATCCATGATGA 60.309 37.037 0.00 0.00 0.00 2.92
389 400 7.528996 ACAAAAGAGACAAATCCATGATGAA 57.471 32.000 0.00 0.00 0.00 2.57
390 401 8.130671 ACAAAAGAGACAAATCCATGATGAAT 57.869 30.769 0.00 0.00 0.00 2.57
391 402 9.246670 ACAAAAGAGACAAATCCATGATGAATA 57.753 29.630 0.00 0.00 0.00 1.75
392 403 9.731819 CAAAAGAGACAAATCCATGATGAATAG 57.268 33.333 0.00 0.00 0.00 1.73
393 404 9.471702 AAAAGAGACAAATCCATGATGAATAGT 57.528 29.630 0.00 0.00 0.00 2.12
394 405 8.447924 AAGAGACAAATCCATGATGAATAGTG 57.552 34.615 0.00 0.00 0.00 2.74
395 406 7.571919 AGAGACAAATCCATGATGAATAGTGT 58.428 34.615 0.00 0.00 0.00 3.55
396 407 7.714377 AGAGACAAATCCATGATGAATAGTGTC 59.286 37.037 0.00 0.00 33.51 3.67
397 408 6.481313 AGACAAATCCATGATGAATAGTGTCG 59.519 38.462 0.00 0.00 37.36 4.35
398 409 6.348498 ACAAATCCATGATGAATAGTGTCGA 58.652 36.000 0.00 0.00 0.00 4.20
399 410 6.823182 ACAAATCCATGATGAATAGTGTCGAA 59.177 34.615 0.00 0.00 0.00 3.71
400 411 7.336679 ACAAATCCATGATGAATAGTGTCGAAA 59.663 33.333 0.00 0.00 0.00 3.46
401 412 7.488187 AATCCATGATGAATAGTGTCGAAAG 57.512 36.000 0.00 0.00 0.00 2.62
402 413 6.220726 TCCATGATGAATAGTGTCGAAAGA 57.779 37.500 0.00 0.00 38.16 2.52
403 414 6.639563 TCCATGATGAATAGTGTCGAAAGAA 58.360 36.000 0.00 0.00 45.01 2.52
404 415 6.758416 TCCATGATGAATAGTGTCGAAAGAAG 59.242 38.462 0.00 0.00 45.01 2.85
405 416 6.758416 CCATGATGAATAGTGTCGAAAGAAGA 59.242 38.462 0.00 0.00 45.01 2.87
406 417 7.254252 CCATGATGAATAGTGTCGAAAGAAGAC 60.254 40.741 0.00 0.00 45.01 3.01
407 418 6.687604 TGATGAATAGTGTCGAAAGAAGACA 58.312 36.000 0.00 0.00 45.23 3.41
414 425 4.955925 TGTCGAAAGAAGACAAAAGCAA 57.044 36.364 0.00 0.00 44.56 3.91
415 426 5.303747 TGTCGAAAGAAGACAAAAGCAAA 57.696 34.783 0.00 0.00 44.56 3.68
416 427 5.704888 TGTCGAAAGAAGACAAAAGCAAAA 58.295 33.333 0.00 0.00 44.56 2.44
417 428 6.153067 TGTCGAAAGAAGACAAAAGCAAAAA 58.847 32.000 0.00 0.00 44.56 1.94
418 429 6.811170 TGTCGAAAGAAGACAAAAGCAAAAAT 59.189 30.769 0.00 0.00 44.56 1.82
419 430 7.330700 TGTCGAAAGAAGACAAAAGCAAAAATT 59.669 29.630 0.00 0.00 44.56 1.82
420 431 7.841277 GTCGAAAGAAGACAAAAGCAAAAATTC 59.159 33.333 0.00 0.00 45.01 2.17
421 432 7.543868 TCGAAAGAAGACAAAAGCAAAAATTCA 59.456 29.630 0.00 0.00 37.03 2.57
422 433 7.632132 CGAAAGAAGACAAAAGCAAAAATTCAC 59.368 33.333 0.00 0.00 0.00 3.18
423 434 7.903995 AAGAAGACAAAAGCAAAAATTCACA 57.096 28.000 0.00 0.00 0.00 3.58
424 435 8.496707 AAGAAGACAAAAGCAAAAATTCACAT 57.503 26.923 0.00 0.00 0.00 3.21
425 436 8.134905 AGAAGACAAAAGCAAAAATTCACATC 57.865 30.769 0.00 0.00 0.00 3.06
426 437 7.983484 AGAAGACAAAAGCAAAAATTCACATCT 59.017 29.630 0.00 0.00 0.00 2.90
427 438 7.473027 AGACAAAAGCAAAAATTCACATCTG 57.527 32.000 0.00 0.00 0.00 2.90
428 439 7.267128 AGACAAAAGCAAAAATTCACATCTGA 58.733 30.769 0.00 0.00 0.00 3.27
429 440 7.765360 AGACAAAAGCAAAAATTCACATCTGAA 59.235 29.630 0.00 0.00 40.77 3.02
491 502 9.912634 TTTGATATGAATTTTTGAGGAGTTGTC 57.087 29.630 0.00 0.00 0.00 3.18
492 503 7.751732 TGATATGAATTTTTGAGGAGTTGTCG 58.248 34.615 0.00 0.00 0.00 4.35
493 504 7.606073 TGATATGAATTTTTGAGGAGTTGTCGA 59.394 33.333 0.00 0.00 0.00 4.20
494 505 5.418310 TGAATTTTTGAGGAGTTGTCGAC 57.582 39.130 9.11 9.11 0.00 4.20
495 506 4.878971 TGAATTTTTGAGGAGTTGTCGACA 59.121 37.500 15.76 15.76 0.00 4.35
496 507 5.530915 TGAATTTTTGAGGAGTTGTCGACAT 59.469 36.000 20.80 4.97 0.00 3.06
497 508 6.708502 TGAATTTTTGAGGAGTTGTCGACATA 59.291 34.615 20.80 7.70 0.00 2.29
498 509 7.390440 TGAATTTTTGAGGAGTTGTCGACATAT 59.610 33.333 20.80 11.07 0.00 1.78
499 510 8.786826 AATTTTTGAGGAGTTGTCGACATATA 57.213 30.769 20.80 0.76 0.00 0.86
500 511 8.964476 ATTTTTGAGGAGTTGTCGACATATAT 57.036 30.769 20.80 5.54 0.00 0.86
501 512 7.770801 TTTTGAGGAGTTGTCGACATATATG 57.229 36.000 20.80 11.29 0.00 1.78
502 513 6.465439 TTGAGGAGTTGTCGACATATATGT 57.535 37.500 20.80 18.31 45.16 2.29
516 527 7.053710 GACATATATGTCGTGAACATCCATG 57.946 40.000 25.89 3.00 45.78 3.66
517 528 5.934043 ACATATATGTCGTGAACATCCATGG 59.066 40.000 12.75 4.97 45.78 3.66
518 529 2.787473 ATGTCGTGAACATCCATGGT 57.213 45.000 12.58 0.00 45.78 3.55
519 530 2.559698 TGTCGTGAACATCCATGGTT 57.440 45.000 12.58 0.00 31.20 3.67
520 531 2.857483 TGTCGTGAACATCCATGGTTT 58.143 42.857 12.58 3.59 31.20 3.27
521 532 3.218453 TGTCGTGAACATCCATGGTTTT 58.782 40.909 12.58 3.20 31.20 2.43
522 533 3.634448 TGTCGTGAACATCCATGGTTTTT 59.366 39.130 12.58 2.34 31.20 1.94
596 607 9.823647 ATGATAGCATATAAGACTATTTTCCCG 57.176 33.333 0.00 0.00 31.57 5.14
597 608 7.764443 TGATAGCATATAAGACTATTTTCCCGC 59.236 37.037 0.00 0.00 0.00 6.13
618 629 4.615682 CGCAATTTGGAGCACATCAAAGTA 60.616 41.667 0.00 0.00 36.49 2.24
624 635 1.559682 GAGCACATCAAAGTAGGGGGA 59.440 52.381 0.00 0.00 0.00 4.81
675 689 2.287788 CCTTGCACCACTTGATGAACAC 60.288 50.000 0.00 0.00 0.00 3.32
678 692 2.957680 TGCACCACTTGATGAACACATT 59.042 40.909 0.00 0.00 0.00 2.71
720 734 1.016627 TTTGACTGACACAGCTGCAC 58.983 50.000 15.27 6.02 34.37 4.57
753 772 3.403228 AGAAGAAGCTGGAGAGGAGAT 57.597 47.619 0.00 0.00 0.00 2.75
759 778 0.106521 GCTGGAGAGGAGATGAAGCC 59.893 60.000 0.00 0.00 0.00 4.35
768 787 2.630297 AGATGAAGCCTGGGCATCT 58.370 52.632 16.13 11.45 42.75 2.90
769 788 0.473326 AGATGAAGCCTGGGCATCTC 59.527 55.000 16.13 11.38 43.79 2.75
770 789 0.536915 GATGAAGCCTGGGCATCTCC 60.537 60.000 16.13 6.02 44.88 3.71
796 1198 7.256799 CCCTCTGTTCCCTTTATATCATCATCA 60.257 40.741 0.00 0.00 0.00 3.07
797 1199 7.605691 CCTCTGTTCCCTTTATATCATCATCAC 59.394 40.741 0.00 0.00 0.00 3.06
798 1200 8.033178 TCTGTTCCCTTTATATCATCATCACA 57.967 34.615 0.00 0.00 0.00 3.58
801 1203 9.288576 TGTTCCCTTTATATCATCATCACAATC 57.711 33.333 0.00 0.00 0.00 2.67
802 1204 8.734386 GTTCCCTTTATATCATCATCACAATCC 58.266 37.037 0.00 0.00 0.00 3.01
889 1295 2.437651 TCTCAATTCTCACCACCACACA 59.562 45.455 0.00 0.00 0.00 3.72
907 1314 4.880696 CACACACATTTCCCAACCAATTTT 59.119 37.500 0.00 0.00 0.00 1.82
938 1345 1.134946 AGCAACAAGAAACACCAGCAC 59.865 47.619 0.00 0.00 0.00 4.40
939 1346 1.134946 GCAACAAGAAACACCAGCACT 59.865 47.619 0.00 0.00 0.00 4.40
940 1347 2.801063 CAACAAGAAACACCAGCACTG 58.199 47.619 0.00 0.00 0.00 3.66
957 1364 3.097342 ACTGGGTAGTGGTAGTAGTGG 57.903 52.381 0.00 0.00 35.34 4.00
958 1365 1.755380 CTGGGTAGTGGTAGTAGTGGC 59.245 57.143 0.00 0.00 0.00 5.01
1161 1568 2.995872 GCGCTGGGACTTCTCGTCT 61.996 63.158 0.00 0.00 42.44 4.18
1221 1631 2.438434 GGGGGAGATGGCAACGTG 60.438 66.667 0.00 0.00 42.51 4.49
1551 1961 4.303993 AACCCCGGGTTCGACGTG 62.304 66.667 21.85 3.26 43.05 4.49
2031 2441 0.318784 ACTCCGACTTCAACGTGCTC 60.319 55.000 0.00 0.00 0.00 4.26
2274 2684 1.003812 TCCTACAACCATTTCACCGGG 59.996 52.381 6.32 0.00 0.00 5.73
2475 2885 2.360852 CAGCTGTCCTTGCAGGGG 60.361 66.667 15.86 8.25 35.59 4.79
2946 3356 1.154016 CGACGTGACGAGCTTCCAT 60.154 57.895 13.70 0.00 35.09 3.41
3135 3545 3.945434 CATCAGCATCGCGGCCAC 61.945 66.667 6.13 0.00 0.00 5.01
3579 4010 2.445085 ACCTCGTCCACCACCACA 60.445 61.111 0.00 0.00 0.00 4.17
4185 4640 9.026074 GTGCAACTAAGTTGTTATAGAGAGATC 57.974 37.037 0.00 0.00 44.40 2.75
4401 5134 3.696051 TGTTTAAGCAGAATCTGATGCCC 59.304 43.478 15.38 0.00 43.60 5.36
4402 5135 3.650281 TTAAGCAGAATCTGATGCCCA 57.350 42.857 15.38 0.00 43.60 5.36
4438 5173 8.504811 TGGATGGACCTGTATAAATCTATCAA 57.495 34.615 0.00 0.00 39.86 2.57
4441 5176 9.778741 GATGGACCTGTATAAATCTATCAACAA 57.221 33.333 0.00 0.00 31.41 2.83
4442 5177 8.958119 TGGACCTGTATAAATCTATCAACAAC 57.042 34.615 0.00 0.00 0.00 3.32
4443 5178 8.544622 TGGACCTGTATAAATCTATCAACAACA 58.455 33.333 0.00 0.00 0.00 3.33
4444 5179 9.046296 GGACCTGTATAAATCTATCAACAACAG 57.954 37.037 0.00 0.00 33.34 3.16
4445 5180 8.438676 ACCTGTATAAATCTATCAACAACAGC 57.561 34.615 0.00 0.00 32.45 4.40
4448 5183 8.978874 TGTATAAATCTATCAACAACAGCCAT 57.021 30.769 0.00 0.00 0.00 4.40
4449 5184 8.839343 TGTATAAATCTATCAACAACAGCCATG 58.161 33.333 0.00 0.00 0.00 3.66
4450 5185 4.644103 AATCTATCAACAACAGCCATGC 57.356 40.909 0.00 0.00 0.00 4.06
4452 5187 3.623703 TCTATCAACAACAGCCATGCAT 58.376 40.909 0.00 0.00 0.00 3.96
4505 5242 5.486735 AATGGATGGATGCAACAAAAAGA 57.513 34.783 0.00 0.00 0.00 2.52
4506 5243 4.524316 TGGATGGATGCAACAAAAAGAG 57.476 40.909 0.00 0.00 0.00 2.85
4520 5257 4.217118 ACAAAAAGAGCTAGTGCATTCAGG 59.783 41.667 0.00 0.00 42.74 3.86
4575 5312 2.358322 TGGACACCTTTTGTTCTCCC 57.642 50.000 0.00 0.00 39.17 4.30
4580 5317 4.891168 GGACACCTTTTGTTCTCCCTTTTA 59.109 41.667 0.00 0.00 39.17 1.52
4599 5338 2.689553 AGTGTGCCCTTTTGTTTTGG 57.310 45.000 0.00 0.00 0.00 3.28
4614 5353 4.385825 TGTTTTGGTGAGAGTGATGGTAC 58.614 43.478 0.00 0.00 0.00 3.34
4637 5376 3.767131 GAGGGAATAGCTTAGCTAGGGAG 59.233 52.174 19.15 0.00 44.66 4.30
4650 5390 3.454082 AGCTAGGGAGTGAATTGAGAAGG 59.546 47.826 0.00 0.00 0.00 3.46
4651 5391 3.452627 GCTAGGGAGTGAATTGAGAAGGA 59.547 47.826 0.00 0.00 0.00 3.36
4652 5392 4.442753 GCTAGGGAGTGAATTGAGAAGGAG 60.443 50.000 0.00 0.00 0.00 3.69
4653 5393 3.796111 AGGGAGTGAATTGAGAAGGAGA 58.204 45.455 0.00 0.00 0.00 3.71
4654 5394 4.369872 AGGGAGTGAATTGAGAAGGAGAT 58.630 43.478 0.00 0.00 0.00 2.75
4655 5395 5.533112 AGGGAGTGAATTGAGAAGGAGATA 58.467 41.667 0.00 0.00 0.00 1.98
4656 5396 5.602145 AGGGAGTGAATTGAGAAGGAGATAG 59.398 44.000 0.00 0.00 0.00 2.08
4657 5397 5.296748 GGAGTGAATTGAGAAGGAGATAGC 58.703 45.833 0.00 0.00 0.00 2.97
4658 5398 5.070313 GGAGTGAATTGAGAAGGAGATAGCT 59.930 44.000 0.00 0.00 0.00 3.32
4659 5399 6.407979 GGAGTGAATTGAGAAGGAGATAGCTT 60.408 42.308 0.00 0.00 0.00 3.74
4660 5400 6.956497 AGTGAATTGAGAAGGAGATAGCTTT 58.044 36.000 0.00 0.00 0.00 3.51
4661 5401 7.401246 AGTGAATTGAGAAGGAGATAGCTTTT 58.599 34.615 0.00 0.00 0.00 2.27
4662 5402 8.543774 AGTGAATTGAGAAGGAGATAGCTTTTA 58.456 33.333 0.00 0.00 0.00 1.52
4663 5403 8.608317 GTGAATTGAGAAGGAGATAGCTTTTAC 58.392 37.037 0.00 0.00 0.00 2.01
4664 5404 8.543774 TGAATTGAGAAGGAGATAGCTTTTACT 58.456 33.333 0.00 0.00 0.00 2.24
4665 5405 9.389755 GAATTGAGAAGGAGATAGCTTTTACTT 57.610 33.333 0.00 0.00 0.00 2.24
4666 5406 8.956533 ATTGAGAAGGAGATAGCTTTTACTTC 57.043 34.615 0.00 0.00 34.60 3.01
4667 5407 7.482169 TGAGAAGGAGATAGCTTTTACTTCA 57.518 36.000 15.19 0.00 36.29 3.02
4668 5408 7.324178 TGAGAAGGAGATAGCTTTTACTTCAC 58.676 38.462 15.19 11.09 36.29 3.18
4669 5409 7.179338 TGAGAAGGAGATAGCTTTTACTTCACT 59.821 37.037 15.19 1.04 36.29 3.41
4670 5410 7.552459 AGAAGGAGATAGCTTTTACTTCACTC 58.448 38.462 15.19 0.00 36.29 3.51
4671 5411 6.859112 AGGAGATAGCTTTTACTTCACTCA 57.141 37.500 0.00 0.00 0.00 3.41
4672 5412 7.246171 AGGAGATAGCTTTTACTTCACTCAA 57.754 36.000 0.00 0.00 0.00 3.02
4673 5413 7.680730 AGGAGATAGCTTTTACTTCACTCAAA 58.319 34.615 0.00 0.00 0.00 2.69
4674 5414 8.325046 AGGAGATAGCTTTTACTTCACTCAAAT 58.675 33.333 0.00 0.00 0.00 2.32
4675 5415 9.601217 GGAGATAGCTTTTACTTCACTCAAATA 57.399 33.333 0.00 0.00 0.00 1.40
4687 5427 8.000780 ACTTCACTCAAATAATCATTTAGCCC 57.999 34.615 0.00 0.00 32.96 5.19
4688 5428 7.836183 ACTTCACTCAAATAATCATTTAGCCCT 59.164 33.333 0.00 0.00 32.96 5.19
4689 5429 7.572523 TCACTCAAATAATCATTTAGCCCTG 57.427 36.000 0.00 0.00 32.96 4.45
4690 5430 6.039717 TCACTCAAATAATCATTTAGCCCTGC 59.960 38.462 0.00 0.00 32.96 4.85
4691 5431 5.893255 ACTCAAATAATCATTTAGCCCTGCA 59.107 36.000 0.00 0.00 32.96 4.41
4692 5432 6.147864 TCAAATAATCATTTAGCCCTGCAC 57.852 37.500 0.00 0.00 32.96 4.57
4693 5433 4.836125 AATAATCATTTAGCCCTGCACG 57.164 40.909 0.00 0.00 0.00 5.34
4694 5434 0.740737 AATCATTTAGCCCTGCACGC 59.259 50.000 0.00 0.00 0.00 5.34
4695 5435 0.394216 ATCATTTAGCCCTGCACGCA 60.394 50.000 3.97 0.00 0.00 5.24
4696 5436 1.026182 TCATTTAGCCCTGCACGCAG 61.026 55.000 12.17 12.17 43.26 5.18
4697 5437 1.026182 CATTTAGCCCTGCACGCAGA 61.026 55.000 20.42 0.00 46.30 4.26
4698 5438 0.322456 ATTTAGCCCTGCACGCAGAA 60.322 50.000 20.42 6.59 46.30 3.02
4699 5439 0.322456 TTTAGCCCTGCACGCAGAAT 60.322 50.000 20.42 8.02 46.30 2.40
4700 5440 0.744414 TTAGCCCTGCACGCAGAATC 60.744 55.000 20.42 8.51 46.30 2.52
4701 5441 1.898330 TAGCCCTGCACGCAGAATCA 61.898 55.000 20.42 0.35 46.30 2.57
4702 5442 2.758089 GCCCTGCACGCAGAATCAG 61.758 63.158 20.42 3.09 46.30 2.90
4703 5443 1.078918 CCCTGCACGCAGAATCAGA 60.079 57.895 20.42 0.00 46.30 3.27
4704 5444 0.674581 CCCTGCACGCAGAATCAGAA 60.675 55.000 20.42 0.00 46.30 3.02
4705 5445 1.159285 CCTGCACGCAGAATCAGAAA 58.841 50.000 20.42 0.00 46.30 2.52
4706 5446 1.135859 CCTGCACGCAGAATCAGAAAC 60.136 52.381 20.42 0.00 46.30 2.78
4707 5447 1.532437 CTGCACGCAGAATCAGAAACA 59.468 47.619 13.87 0.00 46.30 2.83
4708 5448 2.153645 TGCACGCAGAATCAGAAACAT 58.846 42.857 0.00 0.00 0.00 2.71
4709 5449 2.095617 TGCACGCAGAATCAGAAACATG 60.096 45.455 0.00 0.00 0.00 3.21
4710 5450 2.095567 GCACGCAGAATCAGAAACATGT 60.096 45.455 0.00 0.00 0.00 3.21
4711 5451 3.610114 GCACGCAGAATCAGAAACATGTT 60.610 43.478 4.92 4.92 0.00 2.71
4712 5452 4.378356 GCACGCAGAATCAGAAACATGTTA 60.378 41.667 12.39 0.00 0.00 2.41
4713 5453 5.674569 GCACGCAGAATCAGAAACATGTTAT 60.675 40.000 12.39 0.50 0.00 1.89
4714 5454 6.317088 CACGCAGAATCAGAAACATGTTATT 58.683 36.000 12.39 7.76 0.00 1.40
4715 5455 6.803320 CACGCAGAATCAGAAACATGTTATTT 59.197 34.615 12.39 0.00 0.00 1.40
4716 5456 6.803320 ACGCAGAATCAGAAACATGTTATTTG 59.197 34.615 12.39 10.56 0.00 2.32
4717 5457 6.803320 CGCAGAATCAGAAACATGTTATTTGT 59.197 34.615 12.39 0.00 0.00 2.83
4718 5458 7.326789 CGCAGAATCAGAAACATGTTATTTGTT 59.673 33.333 12.39 4.93 38.91 2.83
4719 5459 9.624697 GCAGAATCAGAAACATGTTATTTGTTA 57.375 29.630 12.39 0.00 36.32 2.41
4730 5470 7.140475 CATGTTATTTGTTATGACATGTGCG 57.860 36.000 1.15 0.00 41.45 5.34
4731 5471 5.092105 TGTTATTTGTTATGACATGTGCGC 58.908 37.500 1.15 0.00 35.29 6.09
4732 5472 2.627863 TTTGTTATGACATGTGCGCC 57.372 45.000 1.15 0.00 35.29 6.53
4733 5473 0.808125 TTGTTATGACATGTGCGCCC 59.192 50.000 1.15 0.00 35.29 6.13
4734 5474 1.351707 GTTATGACATGTGCGCCCG 59.648 57.895 1.15 0.00 0.00 6.13
4735 5475 2.468670 TTATGACATGTGCGCCCGC 61.469 57.895 1.15 5.60 42.35 6.13
4745 5485 3.814268 GCGCCCGCACATGTCATT 61.814 61.111 7.91 0.00 41.49 2.57
4746 5486 2.100797 CGCCCGCACATGTCATTG 59.899 61.111 0.00 0.00 0.00 2.82
4747 5487 2.397754 CGCCCGCACATGTCATTGA 61.398 57.895 0.00 0.00 0.00 2.57
4748 5488 1.137404 GCCCGCACATGTCATTGAC 59.863 57.895 9.93 9.93 0.00 3.18
4749 5489 1.585267 GCCCGCACATGTCATTGACA 61.585 55.000 21.05 21.05 46.90 3.58
4750 5490 0.168788 CCCGCACATGTCATTGACAC 59.831 55.000 21.19 8.18 45.65 3.67
4751 5491 0.873721 CCGCACATGTCATTGACACA 59.126 50.000 21.19 0.93 45.65 3.72
4752 5492 1.135888 CCGCACATGTCATTGACACAG 60.136 52.381 21.19 17.99 45.65 3.66
4753 5493 1.799994 CGCACATGTCATTGACACAGA 59.200 47.619 21.19 0.00 45.65 3.41
4754 5494 2.159747 CGCACATGTCATTGACACAGAG 60.160 50.000 21.19 15.44 45.65 3.35
4755 5495 3.069289 GCACATGTCATTGACACAGAGA 58.931 45.455 21.19 0.00 45.65 3.10
4756 5496 3.688185 GCACATGTCATTGACACAGAGAT 59.312 43.478 21.19 2.10 45.65 2.75
4757 5497 4.436986 GCACATGTCATTGACACAGAGATG 60.437 45.833 21.19 16.01 45.65 2.90
4758 5498 3.688185 ACATGTCATTGACACAGAGATGC 59.312 43.478 21.19 0.00 45.65 3.91
4759 5499 3.405823 TGTCATTGACACAGAGATGCA 57.594 42.857 15.41 0.00 37.67 3.96
4760 5500 3.742385 TGTCATTGACACAGAGATGCAA 58.258 40.909 15.41 0.00 37.67 4.08
4761 5501 4.136051 TGTCATTGACACAGAGATGCAAA 58.864 39.130 15.41 0.00 37.67 3.68
4762 5502 4.763279 TGTCATTGACACAGAGATGCAAAT 59.237 37.500 15.41 0.00 37.67 2.32
4763 5503 5.106436 TGTCATTGACACAGAGATGCAAATC 60.106 40.000 15.41 0.00 37.67 2.17
4764 5504 4.397103 TCATTGACACAGAGATGCAAATCC 59.603 41.667 0.00 0.00 0.00 3.01
4765 5505 3.421919 TGACACAGAGATGCAAATCCA 57.578 42.857 0.00 0.00 0.00 3.41
4766 5506 3.340928 TGACACAGAGATGCAAATCCAG 58.659 45.455 0.00 0.00 0.00 3.86
4767 5507 2.681848 GACACAGAGATGCAAATCCAGG 59.318 50.000 0.00 0.00 0.00 4.45
4768 5508 2.022195 CACAGAGATGCAAATCCAGGG 58.978 52.381 0.00 0.00 0.00 4.45
4769 5509 1.637553 ACAGAGATGCAAATCCAGGGT 59.362 47.619 0.00 0.00 0.00 4.34
4770 5510 2.846206 ACAGAGATGCAAATCCAGGGTA 59.154 45.455 0.00 0.00 0.00 3.69
4771 5511 3.266772 ACAGAGATGCAAATCCAGGGTAA 59.733 43.478 0.00 0.00 0.00 2.85
4772 5512 4.263905 ACAGAGATGCAAATCCAGGGTAAA 60.264 41.667 0.00 0.00 0.00 2.01
4773 5513 4.891756 CAGAGATGCAAATCCAGGGTAAAT 59.108 41.667 0.00 0.00 0.00 1.40
4774 5514 5.361857 CAGAGATGCAAATCCAGGGTAAATT 59.638 40.000 0.00 0.00 0.00 1.82
4775 5515 5.960202 AGAGATGCAAATCCAGGGTAAATTT 59.040 36.000 0.00 0.00 0.00 1.82
4776 5516 6.097412 AGAGATGCAAATCCAGGGTAAATTTC 59.903 38.462 0.00 0.00 0.00 2.17
4777 5517 5.960202 AGATGCAAATCCAGGGTAAATTTCT 59.040 36.000 0.00 0.00 0.00 2.52
4778 5518 5.659440 TGCAAATCCAGGGTAAATTTCTC 57.341 39.130 0.00 0.00 0.00 2.87
4779 5519 4.157656 TGCAAATCCAGGGTAAATTTCTCG 59.842 41.667 0.00 0.00 0.00 4.04
4780 5520 4.672409 CAAATCCAGGGTAAATTTCTCGC 58.328 43.478 0.00 0.00 0.00 5.03
4781 5521 2.413310 TCCAGGGTAAATTTCTCGCC 57.587 50.000 0.00 0.00 0.00 5.54
4782 5522 1.631388 TCCAGGGTAAATTTCTCGCCA 59.369 47.619 0.00 0.00 0.00 5.69
4783 5523 1.743394 CCAGGGTAAATTTCTCGCCAC 59.257 52.381 0.00 0.00 0.00 5.01
4784 5524 1.396996 CAGGGTAAATTTCTCGCCACG 59.603 52.381 0.00 0.00 0.00 4.94
4785 5525 1.276989 AGGGTAAATTTCTCGCCACGA 59.723 47.619 0.00 0.00 0.00 4.35
4786 5526 1.395954 GGGTAAATTTCTCGCCACGAC 59.604 52.381 0.00 0.00 0.00 4.34
4787 5527 2.070783 GGTAAATTTCTCGCCACGACA 58.929 47.619 0.00 0.00 0.00 4.35
4788 5528 2.481185 GGTAAATTTCTCGCCACGACAA 59.519 45.455 0.00 0.00 0.00 3.18
4789 5529 3.058777 GGTAAATTTCTCGCCACGACAAA 60.059 43.478 0.00 0.00 29.72 2.83
4790 5530 3.915437 AAATTTCTCGCCACGACAAAT 57.085 38.095 0.00 0.00 36.40 2.32
4791 5531 5.163834 GGTAAATTTCTCGCCACGACAAATA 60.164 40.000 0.00 0.00 34.50 1.40
4792 5532 5.365403 AAATTTCTCGCCACGACAAATAA 57.635 34.783 4.13 0.00 34.50 1.40
4793 5533 4.600012 ATTTCTCGCCACGACAAATAAG 57.400 40.909 2.10 0.00 34.01 1.73
4794 5534 2.004583 TCTCGCCACGACAAATAAGG 57.995 50.000 0.00 0.00 0.00 2.69
4795 5535 1.546923 TCTCGCCACGACAAATAAGGA 59.453 47.619 0.00 0.00 0.00 3.36
4796 5536 2.167693 TCTCGCCACGACAAATAAGGAT 59.832 45.455 0.00 0.00 0.00 3.24
4797 5537 2.540101 CTCGCCACGACAAATAAGGATC 59.460 50.000 0.00 0.00 0.00 3.36
4798 5538 2.093921 TCGCCACGACAAATAAGGATCA 60.094 45.455 0.00 0.00 0.00 2.92
4799 5539 2.872245 CGCCACGACAAATAAGGATCAT 59.128 45.455 0.00 0.00 0.00 2.45
4800 5540 3.059597 CGCCACGACAAATAAGGATCATC 60.060 47.826 0.00 0.00 0.00 2.92
4801 5541 4.130118 GCCACGACAAATAAGGATCATCT 58.870 43.478 0.00 0.00 0.00 2.90
4802 5542 4.576463 GCCACGACAAATAAGGATCATCTT 59.424 41.667 0.00 0.00 0.00 2.40
4803 5543 5.277538 GCCACGACAAATAAGGATCATCTTC 60.278 44.000 0.00 0.00 0.00 2.87
4804 5544 5.237344 CCACGACAAATAAGGATCATCTTCC 59.763 44.000 0.00 0.00 35.90 3.46
4805 5545 5.237344 CACGACAAATAAGGATCATCTTCCC 59.763 44.000 0.00 0.00 36.35 3.97
4806 5546 4.757149 CGACAAATAAGGATCATCTTCCCC 59.243 45.833 0.00 0.00 36.35 4.81
4807 5547 5.455326 CGACAAATAAGGATCATCTTCCCCT 60.455 44.000 0.00 0.00 36.35 4.79
4808 5548 6.347061 ACAAATAAGGATCATCTTCCCCTT 57.653 37.500 0.00 0.00 41.47 3.95
4809 5549 6.131961 ACAAATAAGGATCATCTTCCCCTTG 58.868 40.000 0.00 0.00 39.20 3.61
4810 5550 6.131961 CAAATAAGGATCATCTTCCCCTTGT 58.868 40.000 0.00 0.00 39.20 3.16
4811 5551 6.347061 AATAAGGATCATCTTCCCCTTGTT 57.653 37.500 0.00 0.00 39.20 2.83
4812 5552 4.682021 AAGGATCATCTTCCCCTTGTTT 57.318 40.909 0.00 0.00 37.60 2.83
4813 5553 4.242336 AGGATCATCTTCCCCTTGTTTC 57.758 45.455 0.00 0.00 36.35 2.78
4814 5554 3.854994 AGGATCATCTTCCCCTTGTTTCT 59.145 43.478 0.00 0.00 36.35 2.52
4815 5555 3.950395 GGATCATCTTCCCCTTGTTTCTG 59.050 47.826 0.00 0.00 0.00 3.02
4816 5556 4.324563 GGATCATCTTCCCCTTGTTTCTGA 60.325 45.833 0.00 0.00 0.00 3.27
4817 5557 4.292186 TCATCTTCCCCTTGTTTCTGAG 57.708 45.455 0.00 0.00 0.00 3.35
4818 5558 3.652869 TCATCTTCCCCTTGTTTCTGAGT 59.347 43.478 0.00 0.00 0.00 3.41
4819 5559 3.492102 TCTTCCCCTTGTTTCTGAGTG 57.508 47.619 0.00 0.00 0.00 3.51
4820 5560 2.106511 TCTTCCCCTTGTTTCTGAGTGG 59.893 50.000 0.00 0.00 0.00 4.00
4821 5561 1.814429 TCCCCTTGTTTCTGAGTGGA 58.186 50.000 0.00 0.00 0.00 4.02
4822 5562 2.131854 TCCCCTTGTTTCTGAGTGGAA 58.868 47.619 0.00 0.00 0.00 3.53
4823 5563 2.106511 TCCCCTTGTTTCTGAGTGGAAG 59.893 50.000 0.00 0.00 0.00 3.46
4824 5564 2.158608 CCCCTTGTTTCTGAGTGGAAGT 60.159 50.000 0.00 0.00 0.00 3.01
4825 5565 3.072476 CCCCTTGTTTCTGAGTGGAAGTA 59.928 47.826 0.00 0.00 0.00 2.24
4826 5566 4.319177 CCCTTGTTTCTGAGTGGAAGTAG 58.681 47.826 0.00 0.00 0.00 2.57
4827 5567 4.202367 CCCTTGTTTCTGAGTGGAAGTAGT 60.202 45.833 0.00 0.00 0.00 2.73
4828 5568 5.368989 CCTTGTTTCTGAGTGGAAGTAGTT 58.631 41.667 0.00 0.00 0.00 2.24
4829 5569 6.463897 CCCTTGTTTCTGAGTGGAAGTAGTTA 60.464 42.308 0.00 0.00 0.00 2.24
4830 5570 6.647067 CCTTGTTTCTGAGTGGAAGTAGTTAG 59.353 42.308 0.00 0.00 0.00 2.34
4831 5571 6.726490 TGTTTCTGAGTGGAAGTAGTTAGT 57.274 37.500 0.00 0.00 0.00 2.24
4832 5572 7.120923 TGTTTCTGAGTGGAAGTAGTTAGTT 57.879 36.000 0.00 0.00 0.00 2.24
4833 5573 7.208080 TGTTTCTGAGTGGAAGTAGTTAGTTC 58.792 38.462 0.00 0.00 35.42 3.01
4834 5574 7.069578 TGTTTCTGAGTGGAAGTAGTTAGTTCT 59.930 37.037 6.67 0.00 36.22 3.01
4835 5575 6.576662 TCTGAGTGGAAGTAGTTAGTTCTG 57.423 41.667 6.67 0.00 36.22 3.02
4836 5576 6.304624 TCTGAGTGGAAGTAGTTAGTTCTGA 58.695 40.000 6.67 0.00 36.22 3.27
4837 5577 6.776116 TCTGAGTGGAAGTAGTTAGTTCTGAA 59.224 38.462 6.67 0.00 36.22 3.02
4838 5578 7.451877 TCTGAGTGGAAGTAGTTAGTTCTGAAT 59.548 37.037 6.67 0.00 36.22 2.57
4839 5579 7.963532 TGAGTGGAAGTAGTTAGTTCTGAATT 58.036 34.615 6.67 0.00 36.22 2.17
4840 5580 9.085645 TGAGTGGAAGTAGTTAGTTCTGAATTA 57.914 33.333 6.67 0.00 36.22 1.40
4841 5581 9.924650 GAGTGGAAGTAGTTAGTTCTGAATTAA 57.075 33.333 1.71 1.71 36.22 1.40
4875 5615 4.723248 CTTTTGCTAAAAAGTAGCTCGGG 58.277 43.478 6.88 0.00 44.84 5.14
4876 5616 3.412237 TTGCTAAAAAGTAGCTCGGGT 57.588 42.857 6.88 0.00 40.95 5.28
4877 5617 4.540359 TTGCTAAAAAGTAGCTCGGGTA 57.460 40.909 6.88 0.00 40.95 3.69
4878 5618 4.748277 TGCTAAAAAGTAGCTCGGGTAT 57.252 40.909 6.88 0.00 40.95 2.73
4879 5619 5.857471 TGCTAAAAAGTAGCTCGGGTATA 57.143 39.130 6.88 0.00 40.95 1.47
4880 5620 6.415206 TGCTAAAAAGTAGCTCGGGTATAT 57.585 37.500 6.88 0.00 40.95 0.86
4881 5621 6.823497 TGCTAAAAAGTAGCTCGGGTATATT 58.177 36.000 6.88 0.00 40.95 1.28
4882 5622 7.277396 TGCTAAAAAGTAGCTCGGGTATATTT 58.723 34.615 6.88 0.00 40.95 1.40
4883 5623 7.771826 TGCTAAAAAGTAGCTCGGGTATATTTT 59.228 33.333 6.88 0.45 40.95 1.82
4884 5624 8.618677 GCTAAAAAGTAGCTCGGGTATATTTTT 58.381 33.333 0.00 16.30 37.56 1.94
4885 5625 9.931210 CTAAAAAGTAGCTCGGGTATATTTTTG 57.069 33.333 18.52 12.01 33.63 2.44
4886 5626 6.937436 AAAGTAGCTCGGGTATATTTTTGG 57.063 37.500 0.00 0.00 0.00 3.28
4887 5627 4.386711 AGTAGCTCGGGTATATTTTTGGC 58.613 43.478 0.00 0.00 0.00 4.52
4888 5628 3.577805 AGCTCGGGTATATTTTTGGCT 57.422 42.857 0.00 0.00 0.00 4.75
4889 5629 3.214328 AGCTCGGGTATATTTTTGGCTG 58.786 45.455 0.00 0.00 0.00 4.85
4890 5630 2.287608 GCTCGGGTATATTTTTGGCTGC 60.288 50.000 0.00 0.00 0.00 5.25
4891 5631 2.948979 CTCGGGTATATTTTTGGCTGCA 59.051 45.455 0.50 0.00 0.00 4.41
4892 5632 3.357203 TCGGGTATATTTTTGGCTGCAA 58.643 40.909 0.50 0.00 0.00 4.08
4893 5633 3.380004 TCGGGTATATTTTTGGCTGCAAG 59.620 43.478 0.50 0.00 0.00 4.01
4909 5649 3.372869 GCAAGCCATAAAAATTGCACG 57.627 42.857 4.02 0.00 45.66 5.34
4910 5650 2.736192 GCAAGCCATAAAAATTGCACGT 59.264 40.909 4.02 0.00 45.66 4.49
4911 5651 3.186205 GCAAGCCATAAAAATTGCACGTT 59.814 39.130 4.02 0.00 45.66 3.99
4912 5652 4.319405 GCAAGCCATAAAAATTGCACGTTT 60.319 37.500 4.02 0.00 45.66 3.60
4913 5653 5.746539 CAAGCCATAAAAATTGCACGTTTT 58.253 33.333 10.48 10.48 0.00 2.43
4914 5654 6.197981 CAAGCCATAAAAATTGCACGTTTTT 58.802 32.000 19.64 19.64 40.64 1.94
4915 5655 5.984627 AGCCATAAAAATTGCACGTTTTTC 58.015 33.333 19.41 9.71 39.00 2.29
4916 5656 5.757808 AGCCATAAAAATTGCACGTTTTTCT 59.242 32.000 19.41 11.15 39.00 2.52
4917 5657 6.259829 AGCCATAAAAATTGCACGTTTTTCTT 59.740 30.769 19.41 10.08 39.00 2.52
4918 5658 6.909895 GCCATAAAAATTGCACGTTTTTCTTT 59.090 30.769 19.41 8.31 39.00 2.52
4919 5659 7.430793 GCCATAAAAATTGCACGTTTTTCTTTT 59.569 29.630 19.41 4.69 39.00 2.27
4920 5660 9.283420 CCATAAAAATTGCACGTTTTTCTTTTT 57.717 25.926 19.41 9.60 39.00 1.94
4940 5680 4.966965 TTTTTGCCGAAACAGTAGAACA 57.033 36.364 0.00 0.00 0.00 3.18
4941 5681 4.966965 TTTTGCCGAAACAGTAGAACAA 57.033 36.364 0.00 0.00 0.00 2.83
4942 5682 5.508200 TTTTGCCGAAACAGTAGAACAAT 57.492 34.783 0.00 0.00 0.00 2.71
4943 5683 4.742438 TTGCCGAAACAGTAGAACAATC 57.258 40.909 0.00 0.00 0.00 2.67
4944 5684 4.002906 TGCCGAAACAGTAGAACAATCT 57.997 40.909 0.00 0.00 39.82 2.40
4945 5685 4.385825 TGCCGAAACAGTAGAACAATCTT 58.614 39.130 0.00 0.00 37.10 2.40
4946 5686 4.819630 TGCCGAAACAGTAGAACAATCTTT 59.180 37.500 0.00 0.00 37.10 2.52
4947 5687 5.049680 TGCCGAAACAGTAGAACAATCTTTC 60.050 40.000 0.00 0.00 37.10 2.62
4948 5688 5.179555 GCCGAAACAGTAGAACAATCTTTCT 59.820 40.000 0.00 0.00 39.28 2.52
4949 5689 6.367969 GCCGAAACAGTAGAACAATCTTTCTA 59.632 38.462 0.00 0.00 37.09 2.10
4950 5690 7.064728 GCCGAAACAGTAGAACAATCTTTCTAT 59.935 37.037 0.00 0.00 39.67 1.98
4951 5691 8.383619 CCGAAACAGTAGAACAATCTTTCTATG 58.616 37.037 0.00 0.00 39.67 2.23
4952 5692 8.383619 CGAAACAGTAGAACAATCTTTCTATGG 58.616 37.037 0.00 0.00 39.67 2.74
4953 5693 9.220767 GAAACAGTAGAACAATCTTTCTATGGT 57.779 33.333 0.00 0.00 39.67 3.55
4961 5701 9.449719 AGAACAATCTTTCTATGGTATTTTCGT 57.550 29.630 0.00 0.00 33.89 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.500509 TTTGGCGCAATCGACTTTTT 57.499 40.000 10.83 0.00 45.91 1.94
16 17 2.500509 TTTTGGCGCAATCGACTTTT 57.499 40.000 10.83 0.00 45.91 2.27
17 18 2.500509 TTTTTGGCGCAATCGACTTT 57.499 40.000 10.83 0.00 45.91 2.66
35 36 5.109500 TGAGTTTTGATTTGCCCCTTTTT 57.891 34.783 0.00 0.00 0.00 1.94
36 37 4.707105 CTGAGTTTTGATTTGCCCCTTTT 58.293 39.130 0.00 0.00 0.00 2.27
37 38 3.494924 GCTGAGTTTTGATTTGCCCCTTT 60.495 43.478 0.00 0.00 0.00 3.11
38 39 2.037641 GCTGAGTTTTGATTTGCCCCTT 59.962 45.455 0.00 0.00 0.00 3.95
39 40 1.620323 GCTGAGTTTTGATTTGCCCCT 59.380 47.619 0.00 0.00 0.00 4.79
40 41 1.338105 GGCTGAGTTTTGATTTGCCCC 60.338 52.381 0.00 0.00 33.45 5.80
41 42 2.084610 GGCTGAGTTTTGATTTGCCC 57.915 50.000 0.00 0.00 33.45 5.36
42 43 1.344114 TGGGCTGAGTTTTGATTTGCC 59.656 47.619 0.00 0.00 38.28 4.52
43 44 2.818130 TGGGCTGAGTTTTGATTTGC 57.182 45.000 0.00 0.00 0.00 3.68
44 45 4.589216 TCTTGGGCTGAGTTTTGATTTG 57.411 40.909 0.00 0.00 0.00 2.32
80 81 6.154363 TCAACATTCACCTTTCTTTTTCACCT 59.846 34.615 0.00 0.00 0.00 4.00
92 93 7.111247 TGATTCTTTTGTCAACATTCACCTT 57.889 32.000 0.00 0.00 0.00 3.50
101 102 4.915704 TGACCGTTGATTCTTTTGTCAAC 58.084 39.130 7.89 7.89 46.61 3.18
166 177 6.055588 GCCATGTATTCTTCCACTTTAGCTA 58.944 40.000 0.00 0.00 0.00 3.32
167 178 4.884164 GCCATGTATTCTTCCACTTTAGCT 59.116 41.667 0.00 0.00 0.00 3.32
179 190 3.040477 CCCCCAAATTGCCATGTATTCT 58.960 45.455 0.00 0.00 0.00 2.40
183 194 2.630889 TTCCCCCAAATTGCCATGTA 57.369 45.000 0.00 0.00 0.00 2.29
187 198 2.704190 TACTTTCCCCCAAATTGCCA 57.296 45.000 0.00 0.00 0.00 4.92
190 201 5.395214 GCACCTAATACTTTCCCCCAAATTG 60.395 44.000 0.00 0.00 0.00 2.32
194 205 2.923629 AGCACCTAATACTTTCCCCCAA 59.076 45.455 0.00 0.00 0.00 4.12
195 206 2.568979 AGCACCTAATACTTTCCCCCA 58.431 47.619 0.00 0.00 0.00 4.96
196 207 3.181447 GGTAGCACCTAATACTTTCCCCC 60.181 52.174 0.00 0.00 34.73 5.40
197 208 3.457012 TGGTAGCACCTAATACTTTCCCC 59.543 47.826 6.83 0.00 39.58 4.81
198 209 4.704965 CTGGTAGCACCTAATACTTTCCC 58.295 47.826 6.83 0.00 39.58 3.97
199 210 4.127907 GCTGGTAGCACCTAATACTTTCC 58.872 47.826 6.83 0.00 41.89 3.13
200 211 4.127907 GGCTGGTAGCACCTAATACTTTC 58.872 47.826 2.99 0.00 44.75 2.62
201 212 3.118000 GGGCTGGTAGCACCTAATACTTT 60.118 47.826 11.58 0.00 44.75 2.66
202 213 2.438392 GGGCTGGTAGCACCTAATACTT 59.562 50.000 11.58 0.00 44.75 2.24
203 214 2.047830 GGGCTGGTAGCACCTAATACT 58.952 52.381 11.58 0.00 44.75 2.12
204 215 2.545537 GGGCTGGTAGCACCTAATAC 57.454 55.000 11.58 0.00 44.75 1.89
212 223 0.107214 GCATGTAAGGGCTGGTAGCA 60.107 55.000 2.99 0.00 44.75 3.49
213 224 0.181350 AGCATGTAAGGGCTGGTAGC 59.819 55.000 0.00 0.00 39.30 3.58
214 225 2.224305 GGTAGCATGTAAGGGCTGGTAG 60.224 54.545 0.00 0.00 41.25 3.18
215 226 1.766496 GGTAGCATGTAAGGGCTGGTA 59.234 52.381 0.00 0.00 41.25 3.25
216 227 0.546598 GGTAGCATGTAAGGGCTGGT 59.453 55.000 0.00 0.00 41.25 4.00
217 228 0.546122 TGGTAGCATGTAAGGGCTGG 59.454 55.000 0.00 0.00 41.25 4.85
218 229 2.158769 TCATGGTAGCATGTAAGGGCTG 60.159 50.000 28.83 7.33 41.25 4.85
219 230 2.126882 TCATGGTAGCATGTAAGGGCT 58.873 47.619 28.83 0.00 43.94 5.19
220 231 2.638480 TCATGGTAGCATGTAAGGGC 57.362 50.000 28.83 0.00 34.39 5.19
221 232 4.041567 TGGTATCATGGTAGCATGTAAGGG 59.958 45.833 28.83 7.89 34.39 3.95
222 233 5.227569 TGGTATCATGGTAGCATGTAAGG 57.772 43.478 28.83 8.56 34.39 2.69
223 234 6.291377 AGTTGGTATCATGGTAGCATGTAAG 58.709 40.000 28.83 8.91 32.69 2.34
224 235 6.247229 AGTTGGTATCATGGTAGCATGTAA 57.753 37.500 28.83 17.88 32.69 2.41
225 236 5.887214 AGTTGGTATCATGGTAGCATGTA 57.113 39.130 28.83 19.15 32.69 2.29
226 237 4.778213 AGTTGGTATCATGGTAGCATGT 57.222 40.909 28.83 20.00 32.69 3.21
227 238 5.125356 TGAAGTTGGTATCATGGTAGCATG 58.875 41.667 25.58 25.58 32.69 4.06
228 239 5.372343 TGAAGTTGGTATCATGGTAGCAT 57.628 39.130 18.10 4.14 32.69 3.79
229 240 4.835284 TGAAGTTGGTATCATGGTAGCA 57.165 40.909 13.80 13.80 0.00 3.49
230 241 6.509418 TTTTGAAGTTGGTATCATGGTAGC 57.491 37.500 8.28 8.28 0.00 3.58
231 242 9.357652 CAATTTTTGAAGTTGGTATCATGGTAG 57.642 33.333 0.00 0.00 0.00 3.18
232 243 9.083422 TCAATTTTTGAAGTTGGTATCATGGTA 57.917 29.630 0.00 0.00 36.59 3.25
233 244 7.961351 TCAATTTTTGAAGTTGGTATCATGGT 58.039 30.769 0.00 0.00 36.59 3.55
234 245 8.830201 TTCAATTTTTGAAGTTGGTATCATGG 57.170 30.769 0.00 0.00 44.21 3.66
285 296 9.912634 ATAAGTCGTCAACATTCATGAATTTTT 57.087 25.926 18.41 11.54 0.00 1.94
289 300 9.546428 TCATATAAGTCGTCAACATTCATGAAT 57.454 29.630 15.36 15.36 0.00 2.57
290 301 8.817100 GTCATATAAGTCGTCAACATTCATGAA 58.183 33.333 11.26 11.26 0.00 2.57
291 302 7.167468 CGTCATATAAGTCGTCAACATTCATGA 59.833 37.037 0.00 0.00 0.00 3.07
292 303 7.167468 TCGTCATATAAGTCGTCAACATTCATG 59.833 37.037 0.00 0.00 0.00 3.07
293 304 7.167635 GTCGTCATATAAGTCGTCAACATTCAT 59.832 37.037 0.00 0.00 0.00 2.57
294 305 6.471198 GTCGTCATATAAGTCGTCAACATTCA 59.529 38.462 0.00 0.00 0.00 2.57
295 306 6.471198 TGTCGTCATATAAGTCGTCAACATTC 59.529 38.462 0.00 0.00 0.00 2.67
296 307 6.327154 TGTCGTCATATAAGTCGTCAACATT 58.673 36.000 0.00 0.00 0.00 2.71
297 308 5.886992 TGTCGTCATATAAGTCGTCAACAT 58.113 37.500 0.00 0.00 0.00 2.71
298 309 5.299582 TGTCGTCATATAAGTCGTCAACA 57.700 39.130 0.00 0.00 0.00 3.33
299 310 4.204573 GCTGTCGTCATATAAGTCGTCAAC 59.795 45.833 0.00 0.00 0.00 3.18
300 311 4.348656 GCTGTCGTCATATAAGTCGTCAA 58.651 43.478 0.00 0.00 0.00 3.18
301 312 3.242969 GGCTGTCGTCATATAAGTCGTCA 60.243 47.826 0.00 0.00 0.00 4.35
302 313 3.298317 GGCTGTCGTCATATAAGTCGTC 58.702 50.000 0.00 0.00 0.00 4.20
303 314 2.034305 GGGCTGTCGTCATATAAGTCGT 59.966 50.000 0.00 0.00 0.00 4.34
304 315 2.607282 GGGGCTGTCGTCATATAAGTCG 60.607 54.545 0.00 0.00 0.00 4.18
305 316 2.628657 AGGGGCTGTCGTCATATAAGTC 59.371 50.000 0.00 0.00 0.00 3.01
306 317 2.679082 AGGGGCTGTCGTCATATAAGT 58.321 47.619 0.00 0.00 0.00 2.24
307 318 4.866508 TTAGGGGCTGTCGTCATATAAG 57.133 45.455 0.00 0.00 0.00 1.73
308 319 5.617528 TTTTAGGGGCTGTCGTCATATAA 57.382 39.130 0.00 0.00 0.00 0.98
309 320 5.617528 TTTTTAGGGGCTGTCGTCATATA 57.382 39.130 0.00 0.00 0.00 0.86
310 321 4.497291 TTTTTAGGGGCTGTCGTCATAT 57.503 40.909 0.00 0.00 0.00 1.78
311 322 3.985019 TTTTTAGGGGCTGTCGTCATA 57.015 42.857 0.00 0.00 0.00 2.15
312 323 2.871096 TTTTTAGGGGCTGTCGTCAT 57.129 45.000 0.00 0.00 0.00 3.06
337 348 9.941664 CCTCTATGTGTATGTCAAATTTTCATC 57.058 33.333 8.36 3.75 0.00 2.92
338 349 9.685276 TCCTCTATGTGTATGTCAAATTTTCAT 57.315 29.630 9.57 9.57 0.00 2.57
339 350 9.513906 TTCCTCTATGTGTATGTCAAATTTTCA 57.486 29.630 0.00 0.00 0.00 2.69
340 351 9.774742 GTTCCTCTATGTGTATGTCAAATTTTC 57.225 33.333 0.00 0.00 0.00 2.29
341 352 9.295825 TGTTCCTCTATGTGTATGTCAAATTTT 57.704 29.630 0.00 0.00 0.00 1.82
342 353 8.862325 TGTTCCTCTATGTGTATGTCAAATTT 57.138 30.769 0.00 0.00 0.00 1.82
343 354 8.862325 TTGTTCCTCTATGTGTATGTCAAATT 57.138 30.769 0.00 0.00 0.00 1.82
344 355 8.862325 TTTGTTCCTCTATGTGTATGTCAAAT 57.138 30.769 0.00 0.00 0.00 2.32
345 356 8.684386 TTTTGTTCCTCTATGTGTATGTCAAA 57.316 30.769 0.00 0.00 0.00 2.69
346 357 8.154203 TCTTTTGTTCCTCTATGTGTATGTCAA 58.846 33.333 0.00 0.00 0.00 3.18
347 358 7.676004 TCTTTTGTTCCTCTATGTGTATGTCA 58.324 34.615 0.00 0.00 0.00 3.58
348 359 8.035394 TCTCTTTTGTTCCTCTATGTGTATGTC 58.965 37.037 0.00 0.00 0.00 3.06
349 360 7.819900 GTCTCTTTTGTTCCTCTATGTGTATGT 59.180 37.037 0.00 0.00 0.00 2.29
350 361 7.819415 TGTCTCTTTTGTTCCTCTATGTGTATG 59.181 37.037 0.00 0.00 0.00 2.39
351 362 7.907389 TGTCTCTTTTGTTCCTCTATGTGTAT 58.093 34.615 0.00 0.00 0.00 2.29
352 363 7.297936 TGTCTCTTTTGTTCCTCTATGTGTA 57.702 36.000 0.00 0.00 0.00 2.90
353 364 6.174720 TGTCTCTTTTGTTCCTCTATGTGT 57.825 37.500 0.00 0.00 0.00 3.72
354 365 7.496529 TTTGTCTCTTTTGTTCCTCTATGTG 57.503 36.000 0.00 0.00 0.00 3.21
355 366 7.391833 GGATTTGTCTCTTTTGTTCCTCTATGT 59.608 37.037 0.00 0.00 0.00 2.29
356 367 7.391554 TGGATTTGTCTCTTTTGTTCCTCTATG 59.608 37.037 0.00 0.00 0.00 2.23
357 368 7.461749 TGGATTTGTCTCTTTTGTTCCTCTAT 58.538 34.615 0.00 0.00 0.00 1.98
358 369 6.837312 TGGATTTGTCTCTTTTGTTCCTCTA 58.163 36.000 0.00 0.00 0.00 2.43
359 370 5.694995 TGGATTTGTCTCTTTTGTTCCTCT 58.305 37.500 0.00 0.00 0.00 3.69
360 371 6.207417 TCATGGATTTGTCTCTTTTGTTCCTC 59.793 38.462 0.00 0.00 0.00 3.71
361 372 6.070656 TCATGGATTTGTCTCTTTTGTTCCT 58.929 36.000 0.00 0.00 0.00 3.36
362 373 6.331369 TCATGGATTTGTCTCTTTTGTTCC 57.669 37.500 0.00 0.00 0.00 3.62
363 374 7.596494 TCATCATGGATTTGTCTCTTTTGTTC 58.404 34.615 0.00 0.00 0.00 3.18
364 375 7.528996 TCATCATGGATTTGTCTCTTTTGTT 57.471 32.000 0.00 0.00 0.00 2.83
365 376 7.528996 TTCATCATGGATTTGTCTCTTTTGT 57.471 32.000 0.00 0.00 0.00 2.83
366 377 9.731819 CTATTCATCATGGATTTGTCTCTTTTG 57.268 33.333 0.00 0.00 0.00 2.44
367 378 9.471702 ACTATTCATCATGGATTTGTCTCTTTT 57.528 29.630 0.00 0.00 0.00 2.27
368 379 8.900781 CACTATTCATCATGGATTTGTCTCTTT 58.099 33.333 0.00 0.00 0.00 2.52
369 380 8.051535 ACACTATTCATCATGGATTTGTCTCTT 58.948 33.333 0.00 0.00 0.00 2.85
370 381 7.571919 ACACTATTCATCATGGATTTGTCTCT 58.428 34.615 0.00 0.00 0.00 3.10
371 382 7.307042 CGACACTATTCATCATGGATTTGTCTC 60.307 40.741 14.40 0.45 0.00 3.36
372 383 6.481313 CGACACTATTCATCATGGATTTGTCT 59.519 38.462 14.40 0.00 0.00 3.41
373 384 6.479990 TCGACACTATTCATCATGGATTTGTC 59.520 38.462 9.17 9.17 0.00 3.18
374 385 6.348498 TCGACACTATTCATCATGGATTTGT 58.652 36.000 0.00 0.00 0.00 2.83
375 386 6.849588 TCGACACTATTCATCATGGATTTG 57.150 37.500 0.00 0.00 0.00 2.32
376 387 7.770433 TCTTTCGACACTATTCATCATGGATTT 59.230 33.333 0.00 0.00 0.00 2.17
377 388 7.275183 TCTTTCGACACTATTCATCATGGATT 58.725 34.615 0.00 0.00 0.00 3.01
378 389 6.820335 TCTTTCGACACTATTCATCATGGAT 58.180 36.000 0.00 0.00 0.00 3.41
379 390 6.220726 TCTTTCGACACTATTCATCATGGA 57.779 37.500 0.00 0.00 0.00 3.41
380 391 6.758416 TCTTCTTTCGACACTATTCATCATGG 59.242 38.462 0.00 0.00 0.00 3.66
381 392 7.276438 TGTCTTCTTTCGACACTATTCATCATG 59.724 37.037 0.00 0.00 36.54 3.07
382 393 7.323420 TGTCTTCTTTCGACACTATTCATCAT 58.677 34.615 0.00 0.00 36.54 2.45
383 394 6.687604 TGTCTTCTTTCGACACTATTCATCA 58.312 36.000 0.00 0.00 36.54 3.07
384 395 7.582435 TTGTCTTCTTTCGACACTATTCATC 57.418 36.000 0.00 0.00 40.78 2.92
385 396 7.962964 TTTGTCTTCTTTCGACACTATTCAT 57.037 32.000 0.00 0.00 40.78 2.57
386 397 7.518370 GCTTTTGTCTTCTTTCGACACTATTCA 60.518 37.037 0.00 0.00 40.78 2.57
387 398 6.792726 GCTTTTGTCTTCTTTCGACACTATTC 59.207 38.462 0.00 0.00 40.78 1.75
388 399 6.260050 TGCTTTTGTCTTCTTTCGACACTATT 59.740 34.615 0.00 0.00 40.78 1.73
389 400 5.758296 TGCTTTTGTCTTCTTTCGACACTAT 59.242 36.000 0.00 0.00 40.78 2.12
390 401 5.113383 TGCTTTTGTCTTCTTTCGACACTA 58.887 37.500 0.00 0.00 40.78 2.74
391 402 3.938963 TGCTTTTGTCTTCTTTCGACACT 59.061 39.130 0.00 0.00 40.78 3.55
392 403 4.273005 TGCTTTTGTCTTCTTTCGACAC 57.727 40.909 0.00 0.00 40.78 3.67
393 404 4.955925 TTGCTTTTGTCTTCTTTCGACA 57.044 36.364 0.00 0.00 39.45 4.35
394 405 6.626199 TTTTTGCTTTTGTCTTCTTTCGAC 57.374 33.333 0.00 0.00 0.00 4.20
395 406 7.543868 TGAATTTTTGCTTTTGTCTTCTTTCGA 59.456 29.630 0.00 0.00 0.00 3.71
396 407 7.632132 GTGAATTTTTGCTTTTGTCTTCTTTCG 59.368 33.333 0.00 0.00 0.00 3.46
397 408 8.442384 TGTGAATTTTTGCTTTTGTCTTCTTTC 58.558 29.630 0.00 0.00 0.00 2.62
398 409 8.321650 TGTGAATTTTTGCTTTTGTCTTCTTT 57.678 26.923 0.00 0.00 0.00 2.52
399 410 7.903995 TGTGAATTTTTGCTTTTGTCTTCTT 57.096 28.000 0.00 0.00 0.00 2.52
400 411 7.983484 AGATGTGAATTTTTGCTTTTGTCTTCT 59.017 29.630 0.00 0.00 0.00 2.85
401 412 8.060090 CAGATGTGAATTTTTGCTTTTGTCTTC 58.940 33.333 0.00 0.00 0.00 2.87
402 413 7.765360 TCAGATGTGAATTTTTGCTTTTGTCTT 59.235 29.630 0.00 0.00 0.00 3.01
403 414 7.267128 TCAGATGTGAATTTTTGCTTTTGTCT 58.733 30.769 0.00 0.00 0.00 3.41
404 415 7.467557 TCAGATGTGAATTTTTGCTTTTGTC 57.532 32.000 0.00 0.00 0.00 3.18
405 416 7.846644 TTCAGATGTGAATTTTTGCTTTTGT 57.153 28.000 0.23 0.00 37.79 2.83
465 476 9.912634 GACAACTCCTCAAAAATTCATATCAAA 57.087 29.630 0.00 0.00 0.00 2.69
466 477 8.236586 CGACAACTCCTCAAAAATTCATATCAA 58.763 33.333 0.00 0.00 0.00 2.57
467 478 7.606073 TCGACAACTCCTCAAAAATTCATATCA 59.394 33.333 0.00 0.00 0.00 2.15
468 479 7.905493 GTCGACAACTCCTCAAAAATTCATATC 59.095 37.037 11.55 0.00 0.00 1.63
469 480 7.390440 TGTCGACAACTCCTCAAAAATTCATAT 59.610 33.333 17.62 0.00 0.00 1.78
470 481 6.708502 TGTCGACAACTCCTCAAAAATTCATA 59.291 34.615 17.62 0.00 0.00 2.15
471 482 5.530915 TGTCGACAACTCCTCAAAAATTCAT 59.469 36.000 17.62 0.00 0.00 2.57
472 483 4.878971 TGTCGACAACTCCTCAAAAATTCA 59.121 37.500 17.62 0.00 0.00 2.57
473 484 5.418310 TGTCGACAACTCCTCAAAAATTC 57.582 39.130 17.62 0.00 0.00 2.17
474 485 7.687941 ATATGTCGACAACTCCTCAAAAATT 57.312 32.000 24.13 2.88 0.00 1.82
475 486 8.830580 CATATATGTCGACAACTCCTCAAAAAT 58.169 33.333 24.13 3.36 0.00 1.82
476 487 7.822334 ACATATATGTCGACAACTCCTCAAAAA 59.178 33.333 24.13 0.00 35.87 1.94
477 488 7.327975 ACATATATGTCGACAACTCCTCAAAA 58.672 34.615 24.13 0.00 35.87 2.44
478 489 6.873997 ACATATATGTCGACAACTCCTCAAA 58.126 36.000 24.13 1.28 35.87 2.69
479 490 6.465439 ACATATATGTCGACAACTCCTCAA 57.535 37.500 24.13 2.91 35.87 3.02
480 491 6.073327 GACATATATGTCGACAACTCCTCA 57.927 41.667 25.89 4.17 46.46 3.86
500 511 2.559698 AACCATGGATGTTCACGACA 57.440 45.000 21.47 0.00 43.71 4.35
501 512 3.915437 AAAACCATGGATGTTCACGAC 57.085 42.857 21.47 0.00 0.00 4.34
570 581 9.823647 CGGGAAAATAGTCTTATATGCTATCAT 57.176 33.333 0.00 0.00 36.73 2.45
571 582 7.764443 GCGGGAAAATAGTCTTATATGCTATCA 59.236 37.037 0.00 0.00 0.00 2.15
572 583 7.764443 TGCGGGAAAATAGTCTTATATGCTATC 59.236 37.037 0.00 0.00 0.00 2.08
573 584 7.620880 TGCGGGAAAATAGTCTTATATGCTAT 58.379 34.615 0.00 0.00 0.00 2.97
574 585 6.999950 TGCGGGAAAATAGTCTTATATGCTA 58.000 36.000 0.00 0.00 0.00 3.49
575 586 5.865085 TGCGGGAAAATAGTCTTATATGCT 58.135 37.500 0.00 0.00 0.00 3.79
576 587 6.554334 TTGCGGGAAAATAGTCTTATATGC 57.446 37.500 0.00 0.00 0.00 3.14
577 588 9.398170 CAAATTGCGGGAAAATAGTCTTATATG 57.602 33.333 0.00 0.00 0.00 1.78
578 589 8.576442 CCAAATTGCGGGAAAATAGTCTTATAT 58.424 33.333 0.00 0.00 0.00 0.86
579 590 7.776030 TCCAAATTGCGGGAAAATAGTCTTATA 59.224 33.333 0.00 0.00 0.00 0.98
580 591 6.605594 TCCAAATTGCGGGAAAATAGTCTTAT 59.394 34.615 0.00 0.00 0.00 1.73
581 592 5.946972 TCCAAATTGCGGGAAAATAGTCTTA 59.053 36.000 0.00 0.00 0.00 2.10
582 593 4.770010 TCCAAATTGCGGGAAAATAGTCTT 59.230 37.500 0.00 0.00 0.00 3.01
583 594 4.340617 TCCAAATTGCGGGAAAATAGTCT 58.659 39.130 0.00 0.00 0.00 3.24
584 595 4.672409 CTCCAAATTGCGGGAAAATAGTC 58.328 43.478 0.00 0.00 31.58 2.59
585 596 3.119137 GCTCCAAATTGCGGGAAAATAGT 60.119 43.478 0.00 0.00 31.58 2.12
586 597 3.119173 TGCTCCAAATTGCGGGAAAATAG 60.119 43.478 0.00 0.00 31.58 1.73
587 598 2.828520 TGCTCCAAATTGCGGGAAAATA 59.171 40.909 0.00 0.00 31.58 1.40
588 599 1.622811 TGCTCCAAATTGCGGGAAAAT 59.377 42.857 0.00 0.00 31.58 1.82
589 600 1.043816 TGCTCCAAATTGCGGGAAAA 58.956 45.000 0.00 0.00 31.58 2.29
590 601 0.316841 GTGCTCCAAATTGCGGGAAA 59.683 50.000 0.00 0.00 31.58 3.13
591 602 0.825425 TGTGCTCCAAATTGCGGGAA 60.825 50.000 0.00 0.00 31.58 3.97
592 603 0.611618 ATGTGCTCCAAATTGCGGGA 60.612 50.000 0.00 0.00 0.00 5.14
593 604 0.179129 GATGTGCTCCAAATTGCGGG 60.179 55.000 0.00 0.00 0.00 6.13
594 605 0.527113 TGATGTGCTCCAAATTGCGG 59.473 50.000 0.00 0.00 0.00 5.69
595 606 2.350899 TTGATGTGCTCCAAATTGCG 57.649 45.000 0.00 0.00 0.00 4.85
596 607 3.656559 ACTTTGATGTGCTCCAAATTGC 58.343 40.909 0.00 0.00 32.60 3.56
597 608 5.404946 CCTACTTTGATGTGCTCCAAATTG 58.595 41.667 0.00 0.00 32.60 2.32
618 629 0.409484 CCCATTCAACTTGTCCCCCT 59.591 55.000 0.00 0.00 0.00 4.79
624 635 2.102925 CACTTTGGCCCATTCAACTTGT 59.897 45.455 0.00 0.00 0.00 3.16
675 689 2.304180 AGAGGACCTGGACTGTGAAATG 59.696 50.000 0.00 0.00 0.00 2.32
678 692 1.971357 GAAGAGGACCTGGACTGTGAA 59.029 52.381 0.00 0.00 0.00 3.18
720 734 2.096019 GCTTCTTCTTTTCTCGGTGCAG 60.096 50.000 0.00 0.00 0.00 4.41
722 736 2.096019 CAGCTTCTTCTTTTCTCGGTGC 60.096 50.000 0.00 0.00 0.00 5.01
753 772 3.001514 GGAGATGCCCAGGCTTCA 58.998 61.111 22.36 0.00 44.51 3.02
768 787 4.903149 TGATATAAAGGGAACAGAGGGGA 58.097 43.478 0.00 0.00 0.00 4.81
769 788 5.310594 TGATGATATAAAGGGAACAGAGGGG 59.689 44.000 0.00 0.00 0.00 4.79
770 789 6.439636 TGATGATATAAAGGGAACAGAGGG 57.560 41.667 0.00 0.00 0.00 4.30
771 790 7.605691 GTGATGATGATATAAAGGGAACAGAGG 59.394 40.741 0.00 0.00 0.00 3.69
772 791 8.152898 TGTGATGATGATATAAAGGGAACAGAG 58.847 37.037 0.00 0.00 0.00 3.35
774 793 8.681486 TTGTGATGATGATATAAAGGGAACAG 57.319 34.615 0.00 0.00 0.00 3.16
775 794 9.288576 GATTGTGATGATGATATAAAGGGAACA 57.711 33.333 0.00 0.00 0.00 3.18
776 795 8.734386 GGATTGTGATGATGATATAAAGGGAAC 58.266 37.037 0.00 0.00 0.00 3.62
777 796 8.447200 TGGATTGTGATGATGATATAAAGGGAA 58.553 33.333 0.00 0.00 0.00 3.97
796 1198 1.019278 GTGACGGCGATGTGGATTGT 61.019 55.000 16.62 0.00 0.00 2.71
797 1199 1.705337 GGTGACGGCGATGTGGATTG 61.705 60.000 16.62 0.00 0.00 2.67
798 1200 1.449601 GGTGACGGCGATGTGGATT 60.450 57.895 16.62 0.00 0.00 3.01
801 1203 1.305219 AATTGGTGACGGCGATGTGG 61.305 55.000 16.62 0.00 0.00 4.17
802 1204 0.521291 AAATTGGTGACGGCGATGTG 59.479 50.000 16.62 0.00 0.00 3.21
914 1321 1.748493 TGGTGTTTCTTGTTGCTGTCC 59.252 47.619 0.00 0.00 0.00 4.02
938 1345 1.755380 GCCACTACTACCACTACCCAG 59.245 57.143 0.00 0.00 0.00 4.45
939 1346 1.360162 AGCCACTACTACCACTACCCA 59.640 52.381 0.00 0.00 0.00 4.51
940 1347 1.755380 CAGCCACTACTACCACTACCC 59.245 57.143 0.00 0.00 0.00 3.69
941 1348 1.755380 CCAGCCACTACTACCACTACC 59.245 57.143 0.00 0.00 0.00 3.18
942 1349 1.136500 GCCAGCCACTACTACCACTAC 59.864 57.143 0.00 0.00 0.00 2.73
943 1350 1.006758 AGCCAGCCACTACTACCACTA 59.993 52.381 0.00 0.00 0.00 2.74
944 1351 0.252284 AGCCAGCCACTACTACCACT 60.252 55.000 0.00 0.00 0.00 4.00
945 1352 1.409427 CTAGCCAGCCACTACTACCAC 59.591 57.143 0.00 0.00 0.00 4.16
946 1353 1.776662 CTAGCCAGCCACTACTACCA 58.223 55.000 0.00 0.00 0.00 3.25
947 1354 0.389757 GCTAGCCAGCCACTACTACC 59.610 60.000 2.29 0.00 42.37 3.18
948 1355 3.969995 GCTAGCCAGCCACTACTAC 57.030 57.895 2.29 0.00 42.37 2.73
1161 1568 4.111016 CAGTAGTCGACCGGCGCA 62.111 66.667 13.01 0.00 40.61 6.09
1197 1607 4.530857 CCATCTCCCCCGTCGCAC 62.531 72.222 0.00 0.00 0.00 5.34
1200 1610 3.781307 TTGCCATCTCCCCCGTCG 61.781 66.667 0.00 0.00 0.00 5.12
1207 1617 2.100631 CCGTCACGTTGCCATCTCC 61.101 63.158 0.00 0.00 0.00 3.71
1208 1618 2.100631 CCCGTCACGTTGCCATCTC 61.101 63.158 0.00 0.00 0.00 2.75
1221 1631 2.202756 GTGAGGTCGATGCCCGTC 60.203 66.667 0.00 0.00 39.75 4.79
2031 2441 1.803943 CTGGTTCTCGGAGACCTCG 59.196 63.158 20.06 11.79 0.00 4.63
2373 2783 1.602237 GATCTTCACGAGGCCCCAA 59.398 57.895 0.00 0.00 0.00 4.12
2454 2864 3.631453 CTGCAAGGACAGCTGGTTA 57.369 52.632 19.93 0.00 0.00 2.85
2467 2877 4.659172 CAGGCGGTTCCCCTGCAA 62.659 66.667 11.40 0.00 42.98 4.08
2946 3356 3.323243 GTGCTGGTCGAAGTTTAGCTTA 58.677 45.455 0.00 0.00 37.59 3.09
3161 3586 2.750637 GGCTGTCGTCCTCCTCGA 60.751 66.667 0.00 0.00 34.91 4.04
4185 4640 4.130118 CCATCCTCAAAATTACCTCTCCG 58.870 47.826 0.00 0.00 0.00 4.63
4272 4727 3.639538 CAATGCAGCTGCTCCATTTATC 58.360 45.455 36.61 6.97 42.66 1.75
4277 4735 1.254975 TTGCAATGCAGCTGCTCCAT 61.255 50.000 36.61 21.13 40.61 3.41
4313 4979 6.127140 TGAGGAAAACGACCCCAAAAATAAAA 60.127 34.615 0.00 0.00 0.00 1.52
4401 5134 2.636830 GTCCATCCATCCACTCACTTG 58.363 52.381 0.00 0.00 0.00 3.16
4402 5135 1.561542 GGTCCATCCATCCACTCACTT 59.438 52.381 0.00 0.00 35.97 3.16
4471 5207 8.938801 TGCATCCATCCATTTTTATGTATAGT 57.061 30.769 0.00 0.00 0.00 2.12
4481 5218 6.297582 TCTTTTTGTTGCATCCATCCATTTT 58.702 32.000 0.00 0.00 0.00 1.82
4505 5242 2.089980 CAAAGCCTGAATGCACTAGCT 58.910 47.619 0.00 0.00 42.74 3.32
4506 5243 2.086869 TCAAAGCCTGAATGCACTAGC 58.913 47.619 0.00 0.00 42.57 3.42
4520 5257 7.776933 AGAAAGAAAAGGAACAATTCAAAGC 57.223 32.000 0.00 0.00 0.00 3.51
4547 5284 1.843368 AAAGGTGTCCATGCATCCAG 58.157 50.000 0.00 0.00 0.00 3.86
4575 5312 5.064579 CCAAAACAAAAGGGCACACTAAAAG 59.935 40.000 0.00 0.00 0.00 2.27
4580 5317 1.905894 ACCAAAACAAAAGGGCACACT 59.094 42.857 0.00 0.00 0.00 3.55
4599 5338 1.405821 CCCTCGTACCATCACTCTCAC 59.594 57.143 0.00 0.00 0.00 3.51
4614 5353 2.494073 CCCTAGCTAAGCTATTCCCTCG 59.506 54.545 0.00 0.00 40.54 4.63
4637 5376 7.622893 AAAAGCTATCTCCTTCTCAATTCAC 57.377 36.000 0.00 0.00 0.00 3.18
4661 5401 9.120538 GGGCTAAATGATTATTTGAGTGAAGTA 57.879 33.333 5.75 0.00 37.12 2.24
4662 5402 7.836183 AGGGCTAAATGATTATTTGAGTGAAGT 59.164 33.333 5.75 0.00 37.12 3.01
4663 5403 8.133627 CAGGGCTAAATGATTATTTGAGTGAAG 58.866 37.037 5.75 0.00 37.12 3.02
4664 5404 7.416664 GCAGGGCTAAATGATTATTTGAGTGAA 60.417 37.037 5.75 0.00 37.12 3.18
4665 5405 6.039717 GCAGGGCTAAATGATTATTTGAGTGA 59.960 38.462 5.75 0.00 37.12 3.41
4666 5406 6.183360 TGCAGGGCTAAATGATTATTTGAGTG 60.183 38.462 5.75 0.00 37.12 3.51
4667 5407 5.893255 TGCAGGGCTAAATGATTATTTGAGT 59.107 36.000 5.75 0.00 37.12 3.41
4668 5408 6.211515 GTGCAGGGCTAAATGATTATTTGAG 58.788 40.000 5.75 1.70 37.12 3.02
4669 5409 5.221028 CGTGCAGGGCTAAATGATTATTTGA 60.221 40.000 5.75 0.00 37.12 2.69
4670 5410 4.977963 CGTGCAGGGCTAAATGATTATTTG 59.022 41.667 5.75 0.00 37.12 2.32
4671 5411 4.499696 GCGTGCAGGGCTAAATGATTATTT 60.500 41.667 8.72 0.74 39.69 1.40
4672 5412 3.004734 GCGTGCAGGGCTAAATGATTATT 59.995 43.478 8.72 0.00 0.00 1.40
4673 5413 2.554032 GCGTGCAGGGCTAAATGATTAT 59.446 45.455 8.72 0.00 0.00 1.28
4674 5414 1.946768 GCGTGCAGGGCTAAATGATTA 59.053 47.619 8.72 0.00 0.00 1.75
4675 5415 0.740737 GCGTGCAGGGCTAAATGATT 59.259 50.000 8.72 0.00 0.00 2.57
4676 5416 0.394216 TGCGTGCAGGGCTAAATGAT 60.394 50.000 8.72 0.00 0.00 2.45
4677 5417 1.002746 TGCGTGCAGGGCTAAATGA 60.003 52.632 8.72 0.00 0.00 2.57
4678 5418 1.026182 TCTGCGTGCAGGGCTAAATG 61.026 55.000 20.78 0.00 43.75 2.32
4679 5419 0.322456 TTCTGCGTGCAGGGCTAAAT 60.322 50.000 20.78 0.00 43.75 1.40
4680 5420 0.322456 ATTCTGCGTGCAGGGCTAAA 60.322 50.000 20.78 8.49 43.75 1.85
4681 5421 0.744414 GATTCTGCGTGCAGGGCTAA 60.744 55.000 20.78 8.84 43.75 3.09
4682 5422 1.153369 GATTCTGCGTGCAGGGCTA 60.153 57.895 20.78 5.81 43.75 3.93
4683 5423 2.437359 GATTCTGCGTGCAGGGCT 60.437 61.111 20.78 6.71 43.75 5.19
4684 5424 2.747460 TGATTCTGCGTGCAGGGC 60.747 61.111 20.78 11.24 43.75 5.19
4685 5425 0.674581 TTCTGATTCTGCGTGCAGGG 60.675 55.000 20.78 7.46 43.75 4.45
4686 5426 1.135859 GTTTCTGATTCTGCGTGCAGG 60.136 52.381 20.78 1.01 43.75 4.85
4687 5427 1.532437 TGTTTCTGATTCTGCGTGCAG 59.468 47.619 15.59 15.59 44.86 4.41
4688 5428 1.592064 TGTTTCTGATTCTGCGTGCA 58.408 45.000 0.00 0.00 0.00 4.57
4689 5429 2.095567 ACATGTTTCTGATTCTGCGTGC 60.096 45.455 0.00 0.00 0.00 5.34
4690 5430 3.818961 ACATGTTTCTGATTCTGCGTG 57.181 42.857 0.00 0.00 0.00 5.34
4691 5431 6.500684 AATAACATGTTTCTGATTCTGCGT 57.499 33.333 17.78 0.00 0.00 5.24
4692 5432 6.803320 ACAAATAACATGTTTCTGATTCTGCG 59.197 34.615 17.78 3.42 0.00 5.18
4693 5433 8.524870 AACAAATAACATGTTTCTGATTCTGC 57.475 30.769 17.78 0.00 37.74 4.26
4707 5447 5.743398 GCGCACATGTCATAACAAATAACAT 59.257 36.000 0.30 0.00 39.30 2.71
4708 5448 5.092105 GCGCACATGTCATAACAAATAACA 58.908 37.500 0.30 0.00 39.30 2.41
4709 5449 4.499040 GGCGCACATGTCATAACAAATAAC 59.501 41.667 10.83 0.00 39.30 1.89
4710 5450 4.439426 GGGCGCACATGTCATAACAAATAA 60.439 41.667 10.83 0.00 39.30 1.40
4711 5451 3.066064 GGGCGCACATGTCATAACAAATA 59.934 43.478 10.83 0.00 39.30 1.40
4712 5452 2.159254 GGGCGCACATGTCATAACAAAT 60.159 45.455 10.83 0.00 39.30 2.32
4713 5453 1.201181 GGGCGCACATGTCATAACAAA 59.799 47.619 10.83 0.00 39.30 2.83
4714 5454 0.808125 GGGCGCACATGTCATAACAA 59.192 50.000 10.83 0.00 39.30 2.83
4715 5455 1.365368 CGGGCGCACATGTCATAACA 61.365 55.000 11.77 0.00 40.38 2.41
4716 5456 1.351707 CGGGCGCACATGTCATAAC 59.648 57.895 11.77 0.00 0.00 1.89
4717 5457 2.468670 GCGGGCGCACATGTCATAA 61.469 57.895 11.77 0.00 41.49 1.90
4718 5458 2.894879 GCGGGCGCACATGTCATA 60.895 61.111 11.77 0.00 41.49 2.15
4728 5468 3.814268 AATGACATGTGCGGGCGC 61.814 61.111 1.15 0.00 42.35 6.53
4729 5469 2.100797 CAATGACATGTGCGGGCG 59.899 61.111 1.15 0.00 0.00 6.13
4730 5470 1.137404 GTCAATGACATGTGCGGGC 59.863 57.895 1.15 0.00 32.09 6.13
4731 5471 0.168788 GTGTCAATGACATGTGCGGG 59.831 55.000 19.72 0.00 44.63 6.13
4732 5472 0.873721 TGTGTCAATGACATGTGCGG 59.126 50.000 19.72 0.00 44.63 5.69
4733 5473 1.799994 TCTGTGTCAATGACATGTGCG 59.200 47.619 19.72 6.67 44.63 5.34
4734 5474 3.069289 TCTCTGTGTCAATGACATGTGC 58.931 45.455 19.72 7.05 44.63 4.57
4735 5475 4.436986 GCATCTCTGTGTCAATGACATGTG 60.437 45.833 19.72 14.93 44.63 3.21
4736 5476 3.688185 GCATCTCTGTGTCAATGACATGT 59.312 43.478 19.72 0.00 44.63 3.21
4737 5477 3.687698 TGCATCTCTGTGTCAATGACATG 59.312 43.478 19.72 12.98 44.63 3.21
4738 5478 3.946606 TGCATCTCTGTGTCAATGACAT 58.053 40.909 19.72 0.00 44.63 3.06
4739 5479 3.405823 TGCATCTCTGTGTCAATGACA 57.594 42.857 12.63 12.63 40.50 3.58
4740 5480 4.754372 TTTGCATCTCTGTGTCAATGAC 57.246 40.909 6.41 6.41 0.00 3.06
4741 5481 4.397103 GGATTTGCATCTCTGTGTCAATGA 59.603 41.667 0.00 0.00 0.00 2.57
4742 5482 4.157105 TGGATTTGCATCTCTGTGTCAATG 59.843 41.667 0.00 0.00 0.00 2.82
4743 5483 4.338012 TGGATTTGCATCTCTGTGTCAAT 58.662 39.130 0.00 0.00 0.00 2.57
4744 5484 3.753815 TGGATTTGCATCTCTGTGTCAA 58.246 40.909 0.00 0.00 0.00 3.18
4745 5485 3.340928 CTGGATTTGCATCTCTGTGTCA 58.659 45.455 0.00 0.00 0.00 3.58
4746 5486 2.681848 CCTGGATTTGCATCTCTGTGTC 59.318 50.000 0.00 0.00 0.00 3.67
4747 5487 2.619849 CCCTGGATTTGCATCTCTGTGT 60.620 50.000 0.00 0.00 0.00 3.72
4748 5488 2.022195 CCCTGGATTTGCATCTCTGTG 58.978 52.381 0.00 0.00 0.00 3.66
4749 5489 1.637553 ACCCTGGATTTGCATCTCTGT 59.362 47.619 0.00 0.00 0.00 3.41
4750 5490 2.431954 ACCCTGGATTTGCATCTCTG 57.568 50.000 0.00 0.00 0.00 3.35
4751 5491 4.591321 TTTACCCTGGATTTGCATCTCT 57.409 40.909 0.00 0.00 0.00 3.10
4752 5492 5.859205 AATTTACCCTGGATTTGCATCTC 57.141 39.130 0.00 0.00 0.00 2.75
4753 5493 5.960202 AGAAATTTACCCTGGATTTGCATCT 59.040 36.000 0.00 0.00 0.00 2.90
4754 5494 6.225981 AGAAATTTACCCTGGATTTGCATC 57.774 37.500 0.00 0.00 0.00 3.91
4755 5495 5.163519 CGAGAAATTTACCCTGGATTTGCAT 60.164 40.000 0.00 0.00 0.00 3.96
4756 5496 4.157656 CGAGAAATTTACCCTGGATTTGCA 59.842 41.667 0.00 0.00 0.00 4.08
4757 5497 4.672409 CGAGAAATTTACCCTGGATTTGC 58.328 43.478 0.00 0.00 0.00 3.68
4758 5498 4.440112 GGCGAGAAATTTACCCTGGATTTG 60.440 45.833 0.00 0.00 0.00 2.32
4759 5499 3.699538 GGCGAGAAATTTACCCTGGATTT 59.300 43.478 0.00 0.00 0.00 2.17
4760 5500 3.288092 GGCGAGAAATTTACCCTGGATT 58.712 45.455 0.00 0.00 0.00 3.01
4761 5501 2.241176 TGGCGAGAAATTTACCCTGGAT 59.759 45.455 0.00 0.00 0.00 3.41
4762 5502 1.631388 TGGCGAGAAATTTACCCTGGA 59.369 47.619 0.00 0.00 0.00 3.86
4763 5503 1.743394 GTGGCGAGAAATTTACCCTGG 59.257 52.381 0.00 0.00 0.00 4.45
4764 5504 1.396996 CGTGGCGAGAAATTTACCCTG 59.603 52.381 0.00 0.00 0.00 4.45
4765 5505 1.276989 TCGTGGCGAGAAATTTACCCT 59.723 47.619 0.00 0.00 0.00 4.34
4766 5506 1.395954 GTCGTGGCGAGAAATTTACCC 59.604 52.381 0.00 0.00 36.23 3.69
4767 5507 2.070783 TGTCGTGGCGAGAAATTTACC 58.929 47.619 0.00 0.00 36.23 2.85
4768 5508 3.799137 TTGTCGTGGCGAGAAATTTAC 57.201 42.857 0.00 0.00 36.28 2.01
4774 5514 2.028839 TCCTTATTTGTCGTGGCGAGAA 60.029 45.455 0.00 0.00 37.36 2.87
4775 5515 1.546923 TCCTTATTTGTCGTGGCGAGA 59.453 47.619 0.00 0.00 36.23 4.04
4776 5516 2.004583 TCCTTATTTGTCGTGGCGAG 57.995 50.000 0.00 0.00 36.23 5.03
4777 5517 2.093921 TGATCCTTATTTGTCGTGGCGA 60.094 45.455 0.00 0.00 0.00 5.54
4778 5518 2.276201 TGATCCTTATTTGTCGTGGCG 58.724 47.619 0.00 0.00 0.00 5.69
4779 5519 4.130118 AGATGATCCTTATTTGTCGTGGC 58.870 43.478 0.00 0.00 0.00 5.01
4780 5520 5.237344 GGAAGATGATCCTTATTTGTCGTGG 59.763 44.000 0.00 0.00 36.50 4.94
4781 5521 5.237344 GGGAAGATGATCCTTATTTGTCGTG 59.763 44.000 0.00 0.00 39.57 4.35
4782 5522 5.368989 GGGAAGATGATCCTTATTTGTCGT 58.631 41.667 0.00 0.00 39.57 4.34
4783 5523 4.757149 GGGGAAGATGATCCTTATTTGTCG 59.243 45.833 0.00 0.00 39.57 4.35
4784 5524 5.946486 AGGGGAAGATGATCCTTATTTGTC 58.054 41.667 0.00 0.00 39.57 3.18
4785 5525 6.131961 CAAGGGGAAGATGATCCTTATTTGT 58.868 40.000 0.00 0.00 37.50 2.83
4786 5526 6.131961 ACAAGGGGAAGATGATCCTTATTTG 58.868 40.000 0.00 0.00 37.50 2.32
4787 5527 6.347061 ACAAGGGGAAGATGATCCTTATTT 57.653 37.500 0.00 0.00 37.50 1.40
4788 5528 6.347061 AACAAGGGGAAGATGATCCTTATT 57.653 37.500 0.00 0.00 37.50 1.40
4789 5529 6.161170 AGAAACAAGGGGAAGATGATCCTTAT 59.839 38.462 0.00 0.00 37.50 1.73
4790 5530 5.492524 AGAAACAAGGGGAAGATGATCCTTA 59.507 40.000 0.00 0.00 37.50 2.69
4791 5531 4.293368 AGAAACAAGGGGAAGATGATCCTT 59.707 41.667 0.00 0.00 39.93 3.36
4792 5532 3.854994 AGAAACAAGGGGAAGATGATCCT 59.145 43.478 0.00 0.00 39.57 3.24
4793 5533 3.950395 CAGAAACAAGGGGAAGATGATCC 59.050 47.826 0.00 0.00 38.86 3.36
4794 5534 4.848357 TCAGAAACAAGGGGAAGATGATC 58.152 43.478 0.00 0.00 0.00 2.92
4795 5535 4.290722 ACTCAGAAACAAGGGGAAGATGAT 59.709 41.667 0.00 0.00 0.00 2.45
4796 5536 3.652869 ACTCAGAAACAAGGGGAAGATGA 59.347 43.478 0.00 0.00 0.00 2.92
4797 5537 3.755378 CACTCAGAAACAAGGGGAAGATG 59.245 47.826 0.00 0.00 0.00 2.90
4798 5538 3.245052 CCACTCAGAAACAAGGGGAAGAT 60.245 47.826 0.00 0.00 38.43 2.40
4799 5539 2.106511 CCACTCAGAAACAAGGGGAAGA 59.893 50.000 0.00 0.00 38.43 2.87
4800 5540 2.106511 TCCACTCAGAAACAAGGGGAAG 59.893 50.000 0.00 0.00 42.15 3.46
4801 5541 2.131854 TCCACTCAGAAACAAGGGGAA 58.868 47.619 0.00 0.00 42.15 3.97
4802 5542 1.814429 TCCACTCAGAAACAAGGGGA 58.186 50.000 0.00 0.00 42.88 4.81
4803 5543 2.158608 ACTTCCACTCAGAAACAAGGGG 60.159 50.000 0.00 0.00 37.42 4.79
4804 5544 3.214696 ACTTCCACTCAGAAACAAGGG 57.785 47.619 0.00 0.00 0.00 3.95
4805 5545 4.962155 ACTACTTCCACTCAGAAACAAGG 58.038 43.478 0.00 0.00 0.00 3.61
4806 5546 7.210873 ACTAACTACTTCCACTCAGAAACAAG 58.789 38.462 0.00 0.00 0.00 3.16
4807 5547 7.120923 ACTAACTACTTCCACTCAGAAACAA 57.879 36.000 0.00 0.00 0.00 2.83
4808 5548 6.726490 ACTAACTACTTCCACTCAGAAACA 57.274 37.500 0.00 0.00 0.00 2.83
4809 5549 7.382759 CAGAACTAACTACTTCCACTCAGAAAC 59.617 40.741 0.00 0.00 0.00 2.78
4810 5550 7.287005 TCAGAACTAACTACTTCCACTCAGAAA 59.713 37.037 0.00 0.00 0.00 2.52
4811 5551 6.776116 TCAGAACTAACTACTTCCACTCAGAA 59.224 38.462 0.00 0.00 0.00 3.02
4812 5552 6.304624 TCAGAACTAACTACTTCCACTCAGA 58.695 40.000 0.00 0.00 0.00 3.27
4813 5553 6.576662 TCAGAACTAACTACTTCCACTCAG 57.423 41.667 0.00 0.00 0.00 3.35
4814 5554 6.971726 TTCAGAACTAACTACTTCCACTCA 57.028 37.500 0.00 0.00 0.00 3.41
4815 5555 9.924650 TTAATTCAGAACTAACTACTTCCACTC 57.075 33.333 0.00 0.00 0.00 3.51
4854 5594 4.139038 ACCCGAGCTACTTTTTAGCAAAA 58.861 39.130 6.09 0.00 42.68 2.44
4855 5595 3.746940 ACCCGAGCTACTTTTTAGCAAA 58.253 40.909 6.09 0.00 42.68 3.68
4856 5596 3.412237 ACCCGAGCTACTTTTTAGCAA 57.588 42.857 6.09 0.00 42.68 3.91
4857 5597 4.748277 ATACCCGAGCTACTTTTTAGCA 57.252 40.909 6.09 0.00 42.68 3.49
4858 5598 7.725818 AAATATACCCGAGCTACTTTTTAGC 57.274 36.000 0.00 0.00 40.67 3.09
4859 5599 9.931210 CAAAAATATACCCGAGCTACTTTTTAG 57.069 33.333 0.00 0.00 0.00 1.85
4860 5600 8.895737 CCAAAAATATACCCGAGCTACTTTTTA 58.104 33.333 0.00 0.00 0.00 1.52
4861 5601 7.629866 GCCAAAAATATACCCGAGCTACTTTTT 60.630 37.037 0.00 0.00 0.00 1.94
4862 5602 6.183360 GCCAAAAATATACCCGAGCTACTTTT 60.183 38.462 0.00 0.00 0.00 2.27
4863 5603 5.298527 GCCAAAAATATACCCGAGCTACTTT 59.701 40.000 0.00 0.00 0.00 2.66
4864 5604 4.820173 GCCAAAAATATACCCGAGCTACTT 59.180 41.667 0.00 0.00 0.00 2.24
4865 5605 4.102681 AGCCAAAAATATACCCGAGCTACT 59.897 41.667 0.00 0.00 0.00 2.57
4866 5606 4.213482 CAGCCAAAAATATACCCGAGCTAC 59.787 45.833 0.00 0.00 0.00 3.58
4867 5607 4.385825 CAGCCAAAAATATACCCGAGCTA 58.614 43.478 0.00 0.00 0.00 3.32
4868 5608 3.214328 CAGCCAAAAATATACCCGAGCT 58.786 45.455 0.00 0.00 0.00 4.09
4869 5609 2.287608 GCAGCCAAAAATATACCCGAGC 60.288 50.000 0.00 0.00 0.00 5.03
4870 5610 2.948979 TGCAGCCAAAAATATACCCGAG 59.051 45.455 0.00 0.00 0.00 4.63
4871 5611 3.006112 TGCAGCCAAAAATATACCCGA 57.994 42.857 0.00 0.00 0.00 5.14
4872 5612 3.705604 CTTGCAGCCAAAAATATACCCG 58.294 45.455 0.00 0.00 0.00 5.28
4873 5613 3.457234 GCTTGCAGCCAAAAATATACCC 58.543 45.455 0.00 0.00 34.48 3.69
4886 5626 2.743126 TGCAATTTTTATGGCTTGCAGC 59.257 40.909 4.81 0.11 46.43 5.25
4889 5629 2.736192 ACGTGCAATTTTTATGGCTTGC 59.264 40.909 0.00 0.00 43.25 4.01
4890 5630 4.988708 AACGTGCAATTTTTATGGCTTG 57.011 36.364 0.00 0.00 0.00 4.01
4891 5631 6.259829 AGAAAAACGTGCAATTTTTATGGCTT 59.740 30.769 18.00 0.69 38.92 4.35
4892 5632 5.757808 AGAAAAACGTGCAATTTTTATGGCT 59.242 32.000 18.00 10.86 38.92 4.75
4893 5633 5.984627 AGAAAAACGTGCAATTTTTATGGC 58.015 33.333 18.00 9.29 38.92 4.40
4894 5634 8.833976 AAAAGAAAAACGTGCAATTTTTATGG 57.166 26.923 18.00 0.00 38.92 2.74
4919 5659 4.966965 TGTTCTACTGTTTCGGCAAAAA 57.033 36.364 0.00 0.00 0.00 1.94
4920 5660 4.966965 TTGTTCTACTGTTTCGGCAAAA 57.033 36.364 0.00 0.00 0.00 2.44
4921 5661 4.819630 AGATTGTTCTACTGTTTCGGCAAA 59.180 37.500 0.00 0.00 0.00 3.68
4922 5662 4.385825 AGATTGTTCTACTGTTTCGGCAA 58.614 39.130 0.00 0.00 0.00 4.52
4923 5663 4.002906 AGATTGTTCTACTGTTTCGGCA 57.997 40.909 0.00 0.00 0.00 5.69
4924 5664 5.179555 AGAAAGATTGTTCTACTGTTTCGGC 59.820 40.000 0.00 0.00 36.06 5.54
4925 5665 6.787085 AGAAAGATTGTTCTACTGTTTCGG 57.213 37.500 0.00 0.00 36.06 4.30
4926 5666 8.383619 CCATAGAAAGATTGTTCTACTGTTTCG 58.616 37.037 0.00 0.00 41.67 3.46
4927 5667 9.220767 ACCATAGAAAGATTGTTCTACTGTTTC 57.779 33.333 0.00 0.00 41.67 2.78
4935 5675 9.449719 ACGAAAATACCATAGAAAGATTGTTCT 57.550 29.630 0.00 0.00 40.89 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.