Multiple sequence alignment - TraesCS5D01G016600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G016600 chr5D 100.000 3664 0 0 1 3664 9470005 9473668 0.000000e+00 6767.0
1 TraesCS5D01G016600 chr5D 89.378 1478 121 12 1093 2552 9387172 9385713 0.000000e+00 1827.0
2 TraesCS5D01G016600 chr5D 92.211 475 32 4 10 482 521485810 521485339 0.000000e+00 667.0
3 TraesCS5D01G016600 chr5D 90.984 488 35 6 1 487 422765087 422764608 0.000000e+00 649.0
4 TraesCS5D01G016600 chr5D 89.831 118 5 2 667 777 558575863 558575980 1.060000e-30 145.0
5 TraesCS5D01G016600 chr5D 89.091 110 5 2 668 770 365319860 365319969 2.970000e-26 130.0
6 TraesCS5D01G016600 chr5B 94.789 2130 74 20 879 2998 9416824 9418926 0.000000e+00 3284.0
7 TraesCS5D01G016600 chr5B 89.567 1409 123 9 1135 2537 9334414 9333024 0.000000e+00 1766.0
8 TraesCS5D01G016600 chr5B 90.947 486 38 5 1 484 400520195 400520676 0.000000e+00 649.0
9 TraesCS5D01G016600 chr5B 93.353 331 19 2 3160 3490 9444255 9444582 1.530000e-133 486.0
10 TraesCS5D01G016600 chr5B 91.120 259 21 2 3232 3490 27841692 27841948 2.090000e-92 350.0
11 TraesCS5D01G016600 chr5B 94.857 175 9 0 3490 3664 9444624 9444798 1.300000e-69 274.0
12 TraesCS5D01G016600 chr5B 92.000 175 14 0 3490 3664 27841991 27842165 2.830000e-61 246.0
13 TraesCS5D01G016600 chr5A 92.383 2258 111 37 775 3003 7619029 7621254 0.000000e+00 3160.0
14 TraesCS5D01G016600 chr5A 90.433 1432 114 11 1137 2552 7506244 7504820 0.000000e+00 1864.0
15 TraesCS5D01G016600 chr5A 90.543 497 37 7 1 495 655091345 655090857 0.000000e+00 649.0
16 TraesCS5D01G016600 chr5A 90.272 257 14 4 3243 3490 7621393 7621647 3.530000e-85 326.0
17 TraesCS5D01G016600 chr5A 89.071 183 12 3 3490 3664 7621689 7621871 1.710000e-53 220.0
18 TraesCS5D01G016600 chr5A 86.228 167 9 5 513 668 7618870 7619033 6.290000e-38 169.0
19 TraesCS5D01G016600 chr5A 87.387 111 7 1 667 770 616977653 616977543 1.790000e-23 121.0
20 TraesCS5D01G016600 chr7A 76.320 1364 281 31 1216 2552 4687623 4686275 0.000000e+00 691.0
21 TraesCS5D01G016600 chr3D 92.647 476 31 3 1 475 113028665 113029137 0.000000e+00 682.0
22 TraesCS5D01G016600 chr3D 93.103 174 12 0 3491 3664 548517193 548517366 4.700000e-64 255.0
23 TraesCS5D01G016600 chr3D 75.407 553 121 11 1137 1680 600188770 600188224 1.690000e-63 254.0
24 TraesCS5D01G016600 chr3D 89.744 195 15 1 3296 3490 548516961 548517150 1.020000e-60 244.0
25 TraesCS5D01G016600 chr4D 91.975 486 36 3 2 484 3217427 3217912 0.000000e+00 678.0
26 TraesCS5D01G016600 chr1D 92.017 476 29 6 1 475 25761165 25761632 0.000000e+00 660.0
27 TraesCS5D01G016600 chr1D 89.286 112 5 2 666 770 413308549 413308438 2.300000e-27 134.0
28 TraesCS5D01G016600 chr4A 75.880 1364 287 30 1216 2552 738815426 738816774 0.000000e+00 658.0
29 TraesCS5D01G016600 chr2A 91.250 480 38 4 8 484 768308590 768309068 0.000000e+00 651.0
30 TraesCS5D01G016600 chr2A 88.889 108 5 1 667 767 734991007 734990900 3.840000e-25 126.0
31 TraesCS5D01G016600 chr7D 90.760 487 36 7 2 487 436462522 436463000 3.080000e-180 641.0
32 TraesCS5D01G016600 chr7D 75.476 1366 289 31 1216 2552 4877384 4878732 3.110000e-175 625.0
33 TraesCS5D01G016600 chr7D 87.826 115 7 1 667 774 457226566 457226452 1.070000e-25 128.0
34 TraesCS5D01G016600 chr4B 92.278 259 19 1 3232 3490 605685568 605685311 2.080000e-97 366.0
35 TraesCS5D01G016600 chr4B 94.048 168 10 0 3497 3664 605685262 605685095 4.700000e-64 255.0
36 TraesCS5D01G016600 chr3B 75.134 559 124 11 1137 1686 807374281 807373729 7.860000e-62 248.0
37 TraesCS5D01G016600 chr3B 89.286 112 5 1 665 769 3403222 3403111 2.300000e-27 134.0
38 TraesCS5D01G016600 chr1A 89.815 108 4 1 668 768 10800633 10800526 8.260000e-27 132.0
39 TraesCS5D01G016600 chr1A 88.288 111 6 1 667 770 191864776 191864666 3.840000e-25 126.0
40 TraesCS5D01G016600 chr7B 77.027 148 31 3 1681 1826 140163955 140164101 8.430000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G016600 chr5D 9470005 9473668 3663 False 6767.00 6767 100.0000 1 3664 1 chr5D.!!$F1 3663
1 TraesCS5D01G016600 chr5D 9385713 9387172 1459 True 1827.00 1827 89.3780 1093 2552 1 chr5D.!!$R1 1459
2 TraesCS5D01G016600 chr5B 9416824 9418926 2102 False 3284.00 3284 94.7890 879 2998 1 chr5B.!!$F1 2119
3 TraesCS5D01G016600 chr5B 9333024 9334414 1390 True 1766.00 1766 89.5670 1135 2537 1 chr5B.!!$R1 1402
4 TraesCS5D01G016600 chr5B 9444255 9444798 543 False 380.00 486 94.1050 3160 3664 2 chr5B.!!$F3 504
5 TraesCS5D01G016600 chr5A 7504820 7506244 1424 True 1864.00 1864 90.4330 1137 2552 1 chr5A.!!$R1 1415
6 TraesCS5D01G016600 chr5A 7618870 7621871 3001 False 968.75 3160 89.4885 513 3664 4 chr5A.!!$F1 3151
7 TraesCS5D01G016600 chr7A 4686275 4687623 1348 True 691.00 691 76.3200 1216 2552 1 chr7A.!!$R1 1336
8 TraesCS5D01G016600 chr3D 600188224 600188770 546 True 254.00 254 75.4070 1137 1680 1 chr3D.!!$R1 543
9 TraesCS5D01G016600 chr4A 738815426 738816774 1348 False 658.00 658 75.8800 1216 2552 1 chr4A.!!$F1 1336
10 TraesCS5D01G016600 chr7D 4877384 4878732 1348 False 625.00 625 75.4760 1216 2552 1 chr7D.!!$F1 1336
11 TraesCS5D01G016600 chr3B 807373729 807374281 552 True 248.00 248 75.1340 1137 1686 1 chr3B.!!$R2 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.032813 CAAGAGCCCCACCATCCAAT 60.033 55.0 0.00 0.00 0.00 3.16 F
77 78 0.039437 CAATACCCGGATCCGACGAG 60.039 60.0 35.42 21.35 42.83 4.18 F
719 731 0.098728 CCGCTTTCACAAATAGCCCG 59.901 55.0 0.00 0.00 0.00 6.13 F
2243 2307 0.107703 GGGACAAGATCATGGACGCA 60.108 55.0 2.59 0.00 0.00 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1665 1.966451 CACTTCGCCAGGGTTGACC 60.966 63.158 0.00 0.0 40.67 4.02 R
2072 2133 3.655031 TTCGGCGTGCGCACAATT 61.655 55.556 37.03 0.0 44.11 2.32 R
2276 2349 0.103026 CGTTGATCATCCTCTCGCCA 59.897 55.000 0.00 0.0 0.00 5.69 R
3148 3233 0.035056 CTGGAATGACTGACACCCCC 60.035 60.000 0.00 0.0 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.636435 CGTCACCGGCCAAGGGTT 62.636 66.667 0.00 0.00 34.97 4.11
20 21 2.203437 GTCACCGGCCAAGGGTTT 60.203 61.111 0.00 0.00 34.97 3.27
21 22 2.114411 TCACCGGCCAAGGGTTTC 59.886 61.111 0.00 0.00 34.97 2.78
22 23 2.989253 CACCGGCCAAGGGTTTCC 60.989 66.667 0.00 0.00 34.97 3.13
23 24 4.295199 ACCGGCCAAGGGTTTCCC 62.295 66.667 0.00 0.00 45.90 3.97
32 33 3.018805 GGGTTTCCCCCGATCCCA 61.019 66.667 0.00 0.00 45.80 4.37
33 34 2.618449 GGGTTTCCCCCGATCCCAA 61.618 63.158 0.00 0.00 45.80 4.12
34 35 1.076995 GGTTTCCCCCGATCCCAAG 60.077 63.158 0.00 0.00 0.00 3.61
35 36 1.568118 GGTTTCCCCCGATCCCAAGA 61.568 60.000 0.00 0.00 0.00 3.02
36 37 0.107165 GTTTCCCCCGATCCCAAGAG 60.107 60.000 0.00 0.00 0.00 2.85
37 38 1.921869 TTTCCCCCGATCCCAAGAGC 61.922 60.000 0.00 0.00 0.00 4.09
38 39 3.878667 CCCCCGATCCCAAGAGCC 61.879 72.222 0.00 0.00 0.00 4.70
39 40 3.878667 CCCCGATCCCAAGAGCCC 61.879 72.222 0.00 0.00 0.00 5.19
40 41 3.878667 CCCGATCCCAAGAGCCCC 61.879 72.222 0.00 0.00 0.00 5.80
41 42 3.089874 CCGATCCCAAGAGCCCCA 61.090 66.667 0.00 0.00 0.00 4.96
42 43 2.190578 CGATCCCAAGAGCCCCAC 59.809 66.667 0.00 0.00 0.00 4.61
43 44 2.597903 GATCCCAAGAGCCCCACC 59.402 66.667 0.00 0.00 0.00 4.61
44 45 2.204291 ATCCCAAGAGCCCCACCA 60.204 61.111 0.00 0.00 0.00 4.17
45 46 1.623686 ATCCCAAGAGCCCCACCAT 60.624 57.895 0.00 0.00 0.00 3.55
46 47 1.649271 ATCCCAAGAGCCCCACCATC 61.649 60.000 0.00 0.00 0.00 3.51
47 48 2.276740 CCAAGAGCCCCACCATCC 59.723 66.667 0.00 0.00 0.00 3.51
48 49 2.615465 CCAAGAGCCCCACCATCCA 61.615 63.158 0.00 0.00 0.00 3.41
49 50 1.383799 CAAGAGCCCCACCATCCAA 59.616 57.895 0.00 0.00 0.00 3.53
50 51 0.032813 CAAGAGCCCCACCATCCAAT 60.033 55.000 0.00 0.00 0.00 3.16
51 52 0.259938 AAGAGCCCCACCATCCAATC 59.740 55.000 0.00 0.00 0.00 2.67
52 53 0.920763 AGAGCCCCACCATCCAATCA 60.921 55.000 0.00 0.00 0.00 2.57
53 54 0.753111 GAGCCCCACCATCCAATCAC 60.753 60.000 0.00 0.00 0.00 3.06
54 55 1.758122 GCCCCACCATCCAATCACC 60.758 63.158 0.00 0.00 0.00 4.02
55 56 1.453745 CCCCACCATCCAATCACCG 60.454 63.158 0.00 0.00 0.00 4.94
56 57 2.120909 CCCACCATCCAATCACCGC 61.121 63.158 0.00 0.00 0.00 5.68
57 58 2.120909 CCACCATCCAATCACCGCC 61.121 63.158 0.00 0.00 0.00 6.13
58 59 2.120909 CACCATCCAATCACCGCCC 61.121 63.158 0.00 0.00 0.00 6.13
59 60 2.275089 CCATCCAATCACCGCCCA 59.725 61.111 0.00 0.00 0.00 5.36
60 61 1.379710 CCATCCAATCACCGCCCAA 60.380 57.895 0.00 0.00 0.00 4.12
61 62 0.756442 CCATCCAATCACCGCCCAAT 60.756 55.000 0.00 0.00 0.00 3.16
62 63 1.478471 CCATCCAATCACCGCCCAATA 60.478 52.381 0.00 0.00 0.00 1.90
63 64 1.608590 CATCCAATCACCGCCCAATAC 59.391 52.381 0.00 0.00 0.00 1.89
64 65 0.106918 TCCAATCACCGCCCAATACC 60.107 55.000 0.00 0.00 0.00 2.73
65 66 1.106944 CCAATCACCGCCCAATACCC 61.107 60.000 0.00 0.00 0.00 3.69
66 67 1.153046 AATCACCGCCCAATACCCG 60.153 57.895 0.00 0.00 0.00 5.28
67 68 2.618368 AATCACCGCCCAATACCCGG 62.618 60.000 0.00 0.00 46.97 5.73
68 69 3.788145 CACCGCCCAATACCCGGA 61.788 66.667 0.73 0.00 44.55 5.14
69 70 2.770904 ACCGCCCAATACCCGGAT 60.771 61.111 0.73 0.00 44.55 4.18
70 71 2.032071 CCGCCCAATACCCGGATC 59.968 66.667 0.73 0.00 44.55 3.36
71 72 2.032071 CGCCCAATACCCGGATCC 59.968 66.667 0.73 0.00 0.00 3.36
72 73 2.032071 GCCCAATACCCGGATCCG 59.968 66.667 27.65 27.65 39.44 4.18
73 74 2.513259 GCCCAATACCCGGATCCGA 61.513 63.158 35.42 16.50 42.83 4.55
74 75 1.370064 CCCAATACCCGGATCCGAC 59.630 63.158 35.42 0.00 42.83 4.79
75 76 1.006571 CCAATACCCGGATCCGACG 60.007 63.158 35.42 25.04 42.83 5.12
76 77 1.457823 CCAATACCCGGATCCGACGA 61.458 60.000 35.42 18.96 42.83 4.20
77 78 0.039437 CAATACCCGGATCCGACGAG 60.039 60.000 35.42 21.35 42.83 4.18
78 79 1.803366 AATACCCGGATCCGACGAGC 61.803 60.000 35.42 0.00 42.83 5.03
79 80 2.971095 ATACCCGGATCCGACGAGCA 62.971 60.000 35.42 13.73 42.83 4.26
80 81 3.833645 CCCGGATCCGACGAGCAA 61.834 66.667 35.42 0.00 42.83 3.91
81 82 2.278857 CCGGATCCGACGAGCAAG 60.279 66.667 35.42 12.07 42.83 4.01
82 83 2.278857 CGGATCCGACGAGCAAGG 60.279 66.667 30.62 0.00 42.83 3.61
83 84 2.586357 GGATCCGACGAGCAAGGC 60.586 66.667 0.00 0.00 0.00 4.35
84 85 2.586357 GATCCGACGAGCAAGGCC 60.586 66.667 0.00 0.00 0.00 5.19
85 86 3.371097 GATCCGACGAGCAAGGCCA 62.371 63.158 5.01 0.00 0.00 5.36
86 87 3.665675 ATCCGACGAGCAAGGCCAC 62.666 63.158 5.01 0.00 0.00 5.01
87 88 4.680237 CCGACGAGCAAGGCCACA 62.680 66.667 5.01 0.00 0.00 4.17
88 89 3.414700 CGACGAGCAAGGCCACAC 61.415 66.667 5.01 0.00 0.00 3.82
89 90 3.050275 GACGAGCAAGGCCACACC 61.050 66.667 5.01 0.00 39.61 4.16
90 91 4.988598 ACGAGCAAGGCCACACCG 62.989 66.667 5.01 4.12 46.52 4.94
91 92 4.680237 CGAGCAAGGCCACACCGA 62.680 66.667 5.01 0.00 46.52 4.69
92 93 2.281484 GAGCAAGGCCACACCGAA 60.281 61.111 5.01 0.00 46.52 4.30
93 94 2.281761 AGCAAGGCCACACCGAAG 60.282 61.111 5.01 0.00 46.52 3.79
94 95 4.043200 GCAAGGCCACACCGAAGC 62.043 66.667 5.01 0.00 46.52 3.86
95 96 3.365265 CAAGGCCACACCGAAGCC 61.365 66.667 5.01 0.00 46.52 4.35
98 99 2.125106 GGCCACACCGAAGCCTAG 60.125 66.667 0.00 0.00 43.62 3.02
99 100 2.656069 GGCCACACCGAAGCCTAGA 61.656 63.158 0.00 0.00 43.62 2.43
100 101 1.522569 GCCACACCGAAGCCTAGAT 59.477 57.895 0.00 0.00 0.00 1.98
101 102 0.530870 GCCACACCGAAGCCTAGATC 60.531 60.000 0.00 0.00 0.00 2.75
102 103 0.249073 CCACACCGAAGCCTAGATCG 60.249 60.000 0.00 0.00 38.74 3.69
103 104 0.738975 CACACCGAAGCCTAGATCGA 59.261 55.000 12.27 0.00 41.43 3.59
104 105 1.025812 ACACCGAAGCCTAGATCGAG 58.974 55.000 12.27 0.00 41.43 4.04
105 106 0.318275 CACCGAAGCCTAGATCGAGC 60.318 60.000 12.27 0.00 41.43 5.03
106 107 1.081774 CCGAAGCCTAGATCGAGCG 60.082 63.158 12.27 0.00 41.43 5.03
107 108 1.081774 CGAAGCCTAGATCGAGCGG 60.082 63.158 0.00 0.00 41.43 5.52
108 109 1.287503 GAAGCCTAGATCGAGCGGG 59.712 63.158 10.55 10.55 0.00 6.13
109 110 1.152735 AAGCCTAGATCGAGCGGGA 60.153 57.895 17.34 0.00 0.00 5.14
110 111 0.540830 AAGCCTAGATCGAGCGGGAT 60.541 55.000 17.34 9.81 0.00 3.85
111 112 0.328592 AGCCTAGATCGAGCGGGATA 59.671 55.000 17.34 0.00 0.00 2.59
112 113 1.174783 GCCTAGATCGAGCGGGATAA 58.825 55.000 17.34 0.00 0.00 1.75
113 114 1.133407 GCCTAGATCGAGCGGGATAAG 59.867 57.143 17.34 0.76 0.00 1.73
114 115 1.746220 CCTAGATCGAGCGGGATAAGG 59.254 57.143 9.53 1.31 0.00 2.69
115 116 2.438411 CTAGATCGAGCGGGATAAGGT 58.562 52.381 0.00 0.00 0.00 3.50
116 117 0.962489 AGATCGAGCGGGATAAGGTG 59.038 55.000 0.00 0.00 0.00 4.00
117 118 0.959553 GATCGAGCGGGATAAGGTGA 59.040 55.000 0.00 0.00 0.00 4.02
118 119 1.340248 GATCGAGCGGGATAAGGTGAA 59.660 52.381 0.00 0.00 0.00 3.18
119 120 0.744874 TCGAGCGGGATAAGGTGAAG 59.255 55.000 0.00 0.00 0.00 3.02
120 121 0.249489 CGAGCGGGATAAGGTGAAGG 60.249 60.000 0.00 0.00 0.00 3.46
121 122 1.120530 GAGCGGGATAAGGTGAAGGA 58.879 55.000 0.00 0.00 0.00 3.36
122 123 1.069358 GAGCGGGATAAGGTGAAGGAG 59.931 57.143 0.00 0.00 0.00 3.69
123 124 1.120530 GCGGGATAAGGTGAAGGAGA 58.879 55.000 0.00 0.00 0.00 3.71
124 125 1.694696 GCGGGATAAGGTGAAGGAGAT 59.305 52.381 0.00 0.00 0.00 2.75
125 126 2.548920 GCGGGATAAGGTGAAGGAGATG 60.549 54.545 0.00 0.00 0.00 2.90
126 127 2.965831 CGGGATAAGGTGAAGGAGATGA 59.034 50.000 0.00 0.00 0.00 2.92
127 128 3.388024 CGGGATAAGGTGAAGGAGATGAA 59.612 47.826 0.00 0.00 0.00 2.57
128 129 4.502259 CGGGATAAGGTGAAGGAGATGAAG 60.502 50.000 0.00 0.00 0.00 3.02
129 130 4.384940 GGATAAGGTGAAGGAGATGAAGC 58.615 47.826 0.00 0.00 0.00 3.86
130 131 4.102367 GGATAAGGTGAAGGAGATGAAGCT 59.898 45.833 0.00 0.00 0.00 3.74
131 132 3.347077 AAGGTGAAGGAGATGAAGCTG 57.653 47.619 0.00 0.00 0.00 4.24
132 133 1.558756 AGGTGAAGGAGATGAAGCTGG 59.441 52.381 0.00 0.00 0.00 4.85
133 134 1.377536 GTGAAGGAGATGAAGCTGGC 58.622 55.000 0.00 0.00 0.00 4.85
134 135 0.107993 TGAAGGAGATGAAGCTGGCG 60.108 55.000 0.00 0.00 0.00 5.69
135 136 1.435408 GAAGGAGATGAAGCTGGCGC 61.435 60.000 0.00 0.00 0.00 6.53
144 145 4.521062 AGCTGGCGCTGGTCGATC 62.521 66.667 7.64 0.00 46.86 3.69
146 147 4.147449 CTGGCGCTGGTCGATCCA 62.147 66.667 7.64 0.00 45.01 3.41
162 163 4.247380 CAGATCTGGAGGCCGGCC 62.247 72.222 39.29 39.29 0.00 6.13
183 184 3.585990 GGAATCACGGCCGCCATG 61.586 66.667 28.58 17.25 0.00 3.66
184 185 2.513666 GAATCACGGCCGCCATGA 60.514 61.111 28.58 22.52 0.00 3.07
185 186 2.514592 AATCACGGCCGCCATGAG 60.515 61.111 28.58 8.56 0.00 2.90
192 193 4.802051 GCCGCCATGAGCTCCCAA 62.802 66.667 12.15 0.00 40.39 4.12
193 194 2.825836 CCGCCATGAGCTCCCAAC 60.826 66.667 12.15 0.00 40.39 3.77
194 195 2.046023 CGCCATGAGCTCCCAACA 60.046 61.111 12.15 0.00 40.39 3.33
195 196 2.401766 CGCCATGAGCTCCCAACAC 61.402 63.158 12.15 0.00 40.39 3.32
196 197 2.048603 GCCATGAGCTCCCAACACC 61.049 63.158 12.15 0.00 38.99 4.16
197 198 1.746615 CCATGAGCTCCCAACACCG 60.747 63.158 12.15 0.00 0.00 4.94
198 199 1.746615 CATGAGCTCCCAACACCGG 60.747 63.158 12.15 0.00 0.00 5.28
205 206 4.388499 CCCAACACCGGGTCCTCG 62.388 72.222 6.32 0.00 41.83 4.63
225 226 3.797353 GCCCATGGAAGCCGAGGA 61.797 66.667 15.22 0.00 0.00 3.71
226 227 2.998097 CCCATGGAAGCCGAGGAA 59.002 61.111 15.22 0.00 0.00 3.36
227 228 1.153086 CCCATGGAAGCCGAGGAAG 60.153 63.158 15.22 0.00 0.00 3.46
228 229 1.626356 CCCATGGAAGCCGAGGAAGA 61.626 60.000 15.22 0.00 0.00 2.87
229 230 0.462759 CCATGGAAGCCGAGGAAGAC 60.463 60.000 5.56 0.00 0.00 3.01
230 231 0.462759 CATGGAAGCCGAGGAAGACC 60.463 60.000 0.00 0.00 0.00 3.85
231 232 1.961180 ATGGAAGCCGAGGAAGACCG 61.961 60.000 0.00 0.00 41.83 4.79
236 237 4.452733 CCGAGGAAGACCGGCCAC 62.453 72.222 0.00 0.00 41.83 5.01
237 238 3.691342 CGAGGAAGACCGGCCACA 61.691 66.667 0.00 0.00 41.83 4.17
238 239 2.047179 GAGGAAGACCGGCCACAC 60.047 66.667 0.00 0.00 41.83 3.82
239 240 2.847234 AGGAAGACCGGCCACACA 60.847 61.111 0.00 0.00 41.83 3.72
240 241 2.668550 GGAAGACCGGCCACACAC 60.669 66.667 0.00 0.00 0.00 3.82
241 242 2.668550 GAAGACCGGCCACACACC 60.669 66.667 0.00 0.00 0.00 4.16
242 243 4.265056 AAGACCGGCCACACACCC 62.265 66.667 0.00 0.00 0.00 4.61
254 255 4.722700 ACACCCGCAGCCACCATC 62.723 66.667 0.00 0.00 0.00 3.51
261 262 4.758251 CAGCCACCATCCGTCGCA 62.758 66.667 0.00 0.00 29.71 5.10
262 263 4.457496 AGCCACCATCCGTCGCAG 62.457 66.667 0.00 0.00 29.71 5.18
264 265 4.838152 CCACCATCCGTCGCAGGG 62.838 72.222 0.00 0.00 0.00 4.45
265 266 3.770040 CACCATCCGTCGCAGGGA 61.770 66.667 0.00 1.05 36.49 4.20
266 267 3.000819 ACCATCCGTCGCAGGGAA 61.001 61.111 0.00 0.00 35.57 3.97
267 268 2.202932 CCATCCGTCGCAGGGAAG 60.203 66.667 2.46 0.00 35.57 3.46
268 269 2.202932 CATCCGTCGCAGGGAAGG 60.203 66.667 12.62 12.62 44.73 3.46
269 270 2.683933 ATCCGTCGCAGGGAAGGT 60.684 61.111 17.28 4.48 43.88 3.50
270 271 3.019003 ATCCGTCGCAGGGAAGGTG 62.019 63.158 17.28 0.00 43.88 4.00
314 315 4.335647 CCCGGCACACCAAGCTCT 62.336 66.667 0.00 0.00 34.57 4.09
315 316 2.743928 CCGGCACACCAAGCTCTC 60.744 66.667 0.00 0.00 34.57 3.20
316 317 2.743928 CGGCACACCAAGCTCTCC 60.744 66.667 0.00 0.00 34.57 3.71
317 318 2.743928 GGCACACCAAGCTCTCCG 60.744 66.667 0.00 0.00 35.26 4.63
318 319 3.426568 GCACACCAAGCTCTCCGC 61.427 66.667 0.00 0.00 39.57 5.54
319 320 3.114616 CACACCAAGCTCTCCGCG 61.115 66.667 0.00 0.00 45.59 6.46
333 334 4.688419 CGCGCCAGGCAACAACAG 62.688 66.667 13.30 0.00 43.84 3.16
335 336 3.289834 CGCCAGGCAACAACAGCT 61.290 61.111 13.30 0.00 41.41 4.24
336 337 1.965930 CGCCAGGCAACAACAGCTA 60.966 57.895 13.30 0.00 41.41 3.32
337 338 1.878775 GCCAGGCAACAACAGCTAG 59.121 57.895 6.55 0.00 41.41 3.42
338 339 1.878775 CCAGGCAACAACAGCTAGC 59.121 57.895 6.62 6.62 41.41 3.42
339 340 1.589716 CCAGGCAACAACAGCTAGCC 61.590 60.000 12.13 0.00 45.54 3.93
340 341 1.303643 AGGCAACAACAGCTAGCCC 60.304 57.895 12.13 2.38 46.35 5.19
341 342 2.343426 GGCAACAACAGCTAGCCCC 61.343 63.158 12.13 0.00 39.42 5.80
342 343 2.690778 GCAACAACAGCTAGCCCCG 61.691 63.158 12.13 2.68 0.00 5.73
343 344 2.359975 AACAACAGCTAGCCCCGC 60.360 61.111 12.13 0.00 0.00 6.13
344 345 3.920093 AACAACAGCTAGCCCCGCC 62.920 63.158 12.13 0.00 0.00 6.13
345 346 4.408821 CAACAGCTAGCCCCGCCA 62.409 66.667 12.13 0.00 0.00 5.69
346 347 4.410400 AACAGCTAGCCCCGCCAC 62.410 66.667 12.13 0.00 0.00 5.01
356 357 4.410400 CCCGCCACCACCTTCCTC 62.410 72.222 0.00 0.00 0.00 3.71
357 358 4.760047 CCGCCACCACCTTCCTCG 62.760 72.222 0.00 0.00 0.00 4.63
358 359 3.691342 CGCCACCACCTTCCTCGA 61.691 66.667 0.00 0.00 0.00 4.04
359 360 2.047179 GCCACCACCTTCCTCGAC 60.047 66.667 0.00 0.00 0.00 4.20
360 361 2.261671 CCACCACCTTCCTCGACG 59.738 66.667 0.00 0.00 0.00 5.12
361 362 2.432628 CACCACCTTCCTCGACGC 60.433 66.667 0.00 0.00 0.00 5.19
362 363 3.692406 ACCACCTTCCTCGACGCC 61.692 66.667 0.00 0.00 0.00 5.68
363 364 4.796231 CCACCTTCCTCGACGCCG 62.796 72.222 0.00 0.00 37.07 6.46
384 385 4.883354 GGGCTTGCCGGCAGCTAT 62.883 66.667 34.17 0.00 44.23 2.97
385 386 3.282920 GGCTTGCCGGCAGCTATC 61.283 66.667 34.17 22.02 44.23 2.08
386 387 2.203126 GCTTGCCGGCAGCTATCT 60.203 61.111 31.08 0.00 44.23 1.98
387 388 2.250237 GCTTGCCGGCAGCTATCTC 61.250 63.158 31.08 15.03 44.23 2.75
388 389 1.445095 CTTGCCGGCAGCTATCTCT 59.555 57.895 30.75 0.00 44.23 3.10
389 390 0.879400 CTTGCCGGCAGCTATCTCTG 60.879 60.000 30.75 8.44 44.23 3.35
390 391 2.030262 GCCGGCAGCTATCTCTGG 59.970 66.667 24.80 0.00 38.99 3.86
391 392 2.801631 GCCGGCAGCTATCTCTGGT 61.802 63.158 24.80 0.00 38.99 4.00
392 393 1.068753 CCGGCAGCTATCTCTGGTG 59.931 63.158 0.00 0.00 34.74 4.17
393 394 1.068753 CGGCAGCTATCTCTGGTGG 59.931 63.158 0.00 0.00 34.74 4.61
394 395 4.453093 GCAGCTATCTCTGGTGGC 57.547 61.111 0.00 0.00 34.74 5.01
395 396 1.593750 GCAGCTATCTCTGGTGGCG 60.594 63.158 0.00 0.00 34.74 5.69
396 397 1.068753 CAGCTATCTCTGGTGGCGG 59.931 63.158 0.00 0.00 0.00 6.13
397 398 2.280457 GCTATCTCTGGTGGCGGC 60.280 66.667 0.00 0.00 0.00 6.53
398 399 2.028190 CTATCTCTGGTGGCGGCG 59.972 66.667 0.51 0.51 0.00 6.46
399 400 2.441348 TATCTCTGGTGGCGGCGA 60.441 61.111 12.98 0.00 0.00 5.54
400 401 2.413437 CTATCTCTGGTGGCGGCGAG 62.413 65.000 12.98 4.79 0.00 5.03
401 402 2.904178 TATCTCTGGTGGCGGCGAGA 62.904 60.000 12.98 14.81 36.99 4.04
402 403 3.842923 CTCTGGTGGCGGCGAGAT 61.843 66.667 12.98 0.00 0.00 2.75
403 404 3.781770 CTCTGGTGGCGGCGAGATC 62.782 68.421 12.98 0.00 0.00 2.75
404 405 3.842923 CTGGTGGCGGCGAGATCT 61.843 66.667 12.98 0.00 0.00 2.75
405 406 4.147449 TGGTGGCGGCGAGATCTG 62.147 66.667 12.98 0.00 0.00 2.90
406 407 4.899239 GGTGGCGGCGAGATCTGG 62.899 72.222 12.98 0.00 0.00 3.86
407 408 3.838271 GTGGCGGCGAGATCTGGA 61.838 66.667 12.98 0.00 0.00 3.86
408 409 3.531207 TGGCGGCGAGATCTGGAG 61.531 66.667 12.98 2.78 0.00 3.86
409 410 4.292178 GGCGGCGAGATCTGGAGG 62.292 72.222 12.98 0.16 0.00 4.30
410 411 4.292178 GCGGCGAGATCTGGAGGG 62.292 72.222 12.98 0.00 0.00 4.30
411 412 2.519541 CGGCGAGATCTGGAGGGA 60.520 66.667 9.17 0.00 0.00 4.20
412 413 2.560119 CGGCGAGATCTGGAGGGAG 61.560 68.421 9.17 0.00 0.00 4.30
413 414 2.206536 GGCGAGATCTGGAGGGAGG 61.207 68.421 9.17 0.00 0.00 4.30
414 415 2.206536 GCGAGATCTGGAGGGAGGG 61.207 68.421 9.17 0.00 0.00 4.30
415 416 1.532794 CGAGATCTGGAGGGAGGGG 60.533 68.421 0.00 0.00 0.00 4.79
416 417 1.152139 GAGATCTGGAGGGAGGGGG 60.152 68.421 0.00 0.00 0.00 5.40
417 418 1.630333 AGATCTGGAGGGAGGGGGA 60.630 63.158 0.00 0.00 0.00 4.81
418 419 1.238896 AGATCTGGAGGGAGGGGGAA 61.239 60.000 0.00 0.00 0.00 3.97
419 420 0.766288 GATCTGGAGGGAGGGGGAAG 60.766 65.000 0.00 0.00 0.00 3.46
420 421 2.277126 ATCTGGAGGGAGGGGGAAGG 62.277 65.000 0.00 0.00 0.00 3.46
421 422 4.038804 TGGAGGGAGGGGGAAGGG 62.039 72.222 0.00 0.00 0.00 3.95
422 423 4.845307 GGAGGGAGGGGGAAGGGG 62.845 77.778 0.00 0.00 0.00 4.79
423 424 4.845307 GAGGGAGGGGGAAGGGGG 62.845 77.778 0.00 0.00 0.00 5.40
465 466 3.541713 GCCCTAGTCGCCCCAGAG 61.542 72.222 0.00 0.00 0.00 3.35
466 467 2.840102 CCCTAGTCGCCCCAGAGG 60.840 72.222 0.00 0.00 39.47 3.69
467 468 2.279073 CCTAGTCGCCCCAGAGGA 59.721 66.667 0.00 0.00 38.24 3.71
468 469 1.830408 CCTAGTCGCCCCAGAGGAG 60.830 68.421 0.00 0.00 38.24 3.69
469 470 2.442272 TAGTCGCCCCAGAGGAGC 60.442 66.667 0.00 0.00 38.24 4.70
503 504 4.315349 GGGGGAGGGACCTATCAC 57.685 66.667 0.00 0.00 38.98 3.06
504 505 1.316969 GGGGGAGGGACCTATCACA 59.683 63.158 0.00 0.00 38.98 3.58
505 506 0.104409 GGGGGAGGGACCTATCACAT 60.104 60.000 0.00 0.00 38.98 3.21
506 507 1.059913 GGGGAGGGACCTATCACATG 58.940 60.000 0.00 0.00 38.98 3.21
507 508 1.414538 GGGGAGGGACCTATCACATGA 60.415 57.143 0.00 0.00 38.98 3.07
508 509 1.694696 GGGAGGGACCTATCACATGAC 59.305 57.143 0.00 0.00 38.98 3.06
509 510 1.694696 GGAGGGACCTATCACATGACC 59.305 57.143 0.00 0.00 35.41 4.02
510 511 1.694696 GAGGGACCTATCACATGACCC 59.305 57.143 0.00 0.00 36.47 4.46
511 512 1.009552 AGGGACCTATCACATGACCCA 59.990 52.381 0.00 0.00 38.42 4.51
520 521 3.260475 TCACATGACCCAGGTAATTCG 57.740 47.619 0.00 0.00 0.00 3.34
521 522 2.569853 TCACATGACCCAGGTAATTCGT 59.430 45.455 0.00 0.00 0.00 3.85
620 629 2.601666 TCAGTGAGCCAGCTCGGT 60.602 61.111 14.57 1.66 45.48 4.69
662 674 1.638529 AAGTGAGCTGAGCCACTACT 58.361 50.000 22.59 10.71 38.43 2.57
663 675 2.516227 AGTGAGCTGAGCCACTACTA 57.484 50.000 21.51 0.00 37.93 1.82
664 676 3.025322 AGTGAGCTGAGCCACTACTAT 57.975 47.619 21.51 3.67 37.93 2.12
665 677 4.171878 AGTGAGCTGAGCCACTACTATA 57.828 45.455 21.51 0.00 37.93 1.31
666 678 4.141287 AGTGAGCTGAGCCACTACTATAG 58.859 47.826 21.51 0.00 37.93 1.31
667 679 2.887783 TGAGCTGAGCCACTACTATAGC 59.112 50.000 0.00 0.00 32.78 2.97
668 680 3.153919 GAGCTGAGCCACTACTATAGCT 58.846 50.000 0.00 0.00 40.80 3.32
669 681 4.202472 TGAGCTGAGCCACTACTATAGCTA 60.202 45.833 0.00 0.00 39.22 3.32
670 682 4.929479 AGCTGAGCCACTACTATAGCTAT 58.071 43.478 11.77 11.77 38.07 2.97
671 683 6.068461 AGCTGAGCCACTACTATAGCTATA 57.932 41.667 12.84 12.84 38.07 1.31
672 684 6.119536 AGCTGAGCCACTACTATAGCTATAG 58.880 44.000 30.83 30.83 38.07 1.31
673 685 5.220970 GCTGAGCCACTACTATAGCTATAGC 60.221 48.000 31.90 21.31 39.36 2.97
674 686 5.194432 TGAGCCACTACTATAGCTATAGCC 58.806 45.833 31.90 17.26 43.38 3.93
675 687 5.044772 TGAGCCACTACTATAGCTATAGCCT 60.045 44.000 31.90 20.23 43.38 4.58
676 688 5.833340 AGCCACTACTATAGCTATAGCCTT 58.167 41.667 31.90 19.63 43.38 4.35
677 689 6.257586 AGCCACTACTATAGCTATAGCCTTT 58.742 40.000 31.90 19.34 43.38 3.11
678 690 6.726764 AGCCACTACTATAGCTATAGCCTTTT 59.273 38.462 31.90 19.04 43.38 2.27
679 691 7.036829 GCCACTACTATAGCTATAGCCTTTTC 58.963 42.308 31.90 17.87 43.38 2.29
680 692 7.309867 GCCACTACTATAGCTATAGCCTTTTCA 60.310 40.741 31.90 13.25 43.38 2.69
681 693 8.247562 CCACTACTATAGCTATAGCCTTTTCAG 58.752 40.741 31.90 20.85 43.38 3.02
682 694 7.757624 CACTACTATAGCTATAGCCTTTTCAGC 59.242 40.741 31.90 0.00 43.38 4.26
683 695 6.672266 ACTATAGCTATAGCCTTTTCAGCA 57.328 37.500 31.90 2.72 43.38 4.41
684 696 6.696411 ACTATAGCTATAGCCTTTTCAGCAG 58.304 40.000 31.90 13.44 43.38 4.24
685 697 3.205784 AGCTATAGCCTTTTCAGCAGG 57.794 47.619 21.17 0.00 43.38 4.85
686 698 2.158696 AGCTATAGCCTTTTCAGCAGGG 60.159 50.000 21.17 0.00 43.38 4.45
687 699 2.422093 GCTATAGCCTTTTCAGCAGGGT 60.422 50.000 14.13 0.00 44.56 4.34
688 700 2.134789 ATAGCCTTTTCAGCAGGGTG 57.865 50.000 2.17 0.00 42.32 4.61
689 701 0.609131 TAGCCTTTTCAGCAGGGTGC 60.609 55.000 2.17 0.00 42.32 5.01
690 702 2.935740 GCCTTTTCAGCAGGGTGCC 61.936 63.158 0.00 0.00 46.52 5.01
691 703 2.629656 CCTTTTCAGCAGGGTGCCG 61.630 63.158 0.00 0.00 46.52 5.69
692 704 3.273080 CTTTTCAGCAGGGTGCCGC 62.273 63.158 0.00 0.00 46.52 6.53
693 705 3.790416 TTTTCAGCAGGGTGCCGCT 62.790 57.895 0.00 0.00 46.52 5.52
694 706 2.404566 TTTTCAGCAGGGTGCCGCTA 62.405 55.000 0.00 0.00 46.52 4.26
695 707 2.404566 TTTCAGCAGGGTGCCGCTAA 62.405 55.000 0.00 0.00 46.52 3.09
696 708 2.359850 CAGCAGGGTGCCGCTAAA 60.360 61.111 0.00 0.00 46.52 1.85
697 709 1.750399 CAGCAGGGTGCCGCTAAAT 60.750 57.895 0.00 0.00 46.52 1.40
698 710 1.750399 AGCAGGGTGCCGCTAAATG 60.750 57.895 0.00 0.00 46.52 2.32
699 711 2.774799 GCAGGGTGCCGCTAAATGG 61.775 63.158 0.00 0.00 37.42 3.16
706 718 3.196648 CCGCTAAATGGCCGCTTT 58.803 55.556 0.00 3.03 0.00 3.51
707 719 1.064134 CCGCTAAATGGCCGCTTTC 59.936 57.895 6.39 0.00 0.00 2.62
708 720 1.653094 CCGCTAAATGGCCGCTTTCA 61.653 55.000 6.39 0.00 0.00 2.69
709 721 0.523335 CGCTAAATGGCCGCTTTCAC 60.523 55.000 6.39 0.86 0.00 3.18
710 722 0.525761 GCTAAATGGCCGCTTTCACA 59.474 50.000 6.39 0.00 0.00 3.58
711 723 1.067915 GCTAAATGGCCGCTTTCACAA 60.068 47.619 6.39 0.00 0.00 3.33
712 724 2.609244 GCTAAATGGCCGCTTTCACAAA 60.609 45.455 6.39 0.00 0.00 2.83
713 725 2.837532 AAATGGCCGCTTTCACAAAT 57.162 40.000 0.00 0.00 0.00 2.32
714 726 3.951775 AAATGGCCGCTTTCACAAATA 57.048 38.095 0.00 0.00 0.00 1.40
715 727 3.508744 AATGGCCGCTTTCACAAATAG 57.491 42.857 0.00 0.00 0.00 1.73
716 728 0.525761 TGGCCGCTTTCACAAATAGC 59.474 50.000 0.00 0.00 0.00 2.97
717 729 0.179137 GGCCGCTTTCACAAATAGCC 60.179 55.000 0.00 0.00 0.00 3.93
718 730 0.179137 GCCGCTTTCACAAATAGCCC 60.179 55.000 0.00 0.00 0.00 5.19
719 731 0.098728 CCGCTTTCACAAATAGCCCG 59.901 55.000 0.00 0.00 0.00 6.13
720 732 0.523335 CGCTTTCACAAATAGCCCGC 60.523 55.000 0.00 0.00 0.00 6.13
721 733 0.811281 GCTTTCACAAATAGCCCGCT 59.189 50.000 0.00 0.00 0.00 5.52
722 734 2.014128 GCTTTCACAAATAGCCCGCTA 58.986 47.619 0.00 0.00 0.00 4.26
723 735 2.618709 GCTTTCACAAATAGCCCGCTAT 59.381 45.455 3.31 3.31 40.63 2.97
731 743 1.897560 ATAGCCCGCTATTTGAAGGC 58.102 50.000 3.31 0.00 44.20 4.35
732 744 0.179029 TAGCCCGCTATTTGAAGGCC 60.179 55.000 0.00 0.00 45.00 5.19
733 745 2.490148 GCCCGCTATTTGAAGGCCC 61.490 63.158 0.00 0.00 37.66 5.80
734 746 2.186826 CCCGCTATTTGAAGGCCCG 61.187 63.158 0.00 0.00 0.00 6.13
735 747 2.715624 CGCTATTTGAAGGCCCGC 59.284 61.111 0.00 0.00 0.00 6.13
736 748 2.834618 CGCTATTTGAAGGCCCGCC 61.835 63.158 0.00 0.00 0.00 6.13
737 749 2.834618 GCTATTTGAAGGCCCGCCG 61.835 63.158 0.00 0.00 41.95 6.46
738 750 2.826738 TATTTGAAGGCCCGCCGC 60.827 61.111 0.00 0.00 41.95 6.53
739 751 3.338275 TATTTGAAGGCCCGCCGCT 62.338 57.895 0.00 0.00 41.95 5.52
740 752 1.973816 TATTTGAAGGCCCGCCGCTA 61.974 55.000 0.00 0.00 41.95 4.26
741 753 2.624674 ATTTGAAGGCCCGCCGCTAT 62.625 55.000 0.00 0.00 41.95 2.97
742 754 2.830186 TTTGAAGGCCCGCCGCTATT 62.830 55.000 0.00 0.00 41.95 1.73
743 755 2.516225 GAAGGCCCGCCGCTATTT 60.516 61.111 0.00 0.00 41.95 1.40
744 756 2.044352 AAGGCCCGCCGCTATTTT 60.044 55.556 0.00 0.00 41.95 1.82
745 757 1.663379 GAAGGCCCGCCGCTATTTTT 61.663 55.000 0.00 0.00 41.95 1.94
746 758 1.663379 AAGGCCCGCCGCTATTTTTC 61.663 55.000 0.00 0.00 41.95 2.29
747 759 2.411504 GGCCCGCCGCTATTTTTCA 61.412 57.895 0.00 0.00 37.74 2.69
748 760 1.733526 GCCCGCCGCTATTTTTCAT 59.266 52.632 0.00 0.00 0.00 2.57
749 761 0.948678 GCCCGCCGCTATTTTTCATA 59.051 50.000 0.00 0.00 0.00 2.15
750 762 1.069227 GCCCGCCGCTATTTTTCATAG 60.069 52.381 0.00 0.00 0.00 2.23
751 763 1.069227 CCCGCCGCTATTTTTCATAGC 60.069 52.381 4.08 4.08 42.53 2.97
752 764 1.069227 CCGCCGCTATTTTTCATAGCC 60.069 52.381 8.01 0.00 42.89 3.93
753 765 1.069227 CGCCGCTATTTTTCATAGCCC 60.069 52.381 8.01 0.35 42.89 5.19
754 766 1.069227 GCCGCTATTTTTCATAGCCCG 60.069 52.381 8.01 1.13 42.89 6.13
755 767 1.069227 CCGCTATTTTTCATAGCCCGC 60.069 52.381 8.01 0.00 42.89 6.13
756 768 1.873591 CGCTATTTTTCATAGCCCGCT 59.126 47.619 8.01 0.00 42.89 5.52
757 769 3.064207 CGCTATTTTTCATAGCCCGCTA 58.936 45.455 8.01 0.00 42.89 4.26
758 770 3.684788 CGCTATTTTTCATAGCCCGCTAT 59.315 43.478 3.31 3.31 42.89 2.97
759 771 4.154195 CGCTATTTTTCATAGCCCGCTATT 59.846 41.667 6.48 0.00 42.89 1.73
760 772 5.334879 CGCTATTTTTCATAGCCCGCTATTT 60.335 40.000 6.48 0.00 42.89 1.40
761 773 6.128391 CGCTATTTTTCATAGCCCGCTATTTA 60.128 38.462 6.48 0.00 42.89 1.40
762 774 7.572353 CGCTATTTTTCATAGCCCGCTATTTAA 60.572 37.037 6.48 2.47 42.89 1.52
763 775 8.079809 GCTATTTTTCATAGCCCGCTATTTAAA 58.920 33.333 6.48 7.86 40.69 1.52
764 776 9.959749 CTATTTTTCATAGCCCGCTATTTAAAA 57.040 29.630 18.53 18.53 37.16 1.52
765 777 8.642908 ATTTTTCATAGCCCGCTATTTAAAAC 57.357 30.769 18.57 0.00 37.16 2.43
766 778 6.761099 TTTCATAGCCCGCTATTTAAAACA 57.239 33.333 6.48 0.00 37.16 2.83
767 779 6.952773 TTCATAGCCCGCTATTTAAAACAT 57.047 33.333 6.48 0.00 37.16 2.71
768 780 6.952773 TCATAGCCCGCTATTTAAAACATT 57.047 33.333 6.48 0.00 37.16 2.71
769 781 6.734137 TCATAGCCCGCTATTTAAAACATTG 58.266 36.000 6.48 0.00 37.16 2.82
770 782 3.780902 AGCCCGCTATTTAAAACATTGC 58.219 40.909 0.00 0.00 0.00 3.56
771 783 3.447229 AGCCCGCTATTTAAAACATTGCT 59.553 39.130 0.00 0.00 0.00 3.91
772 784 3.796717 GCCCGCTATTTAAAACATTGCTC 59.203 43.478 0.00 0.00 0.00 4.26
773 785 4.440112 GCCCGCTATTTAAAACATTGCTCT 60.440 41.667 0.00 0.00 0.00 4.09
811 823 0.674895 GTGGGTCATGTCTGCCAGAC 60.675 60.000 17.99 17.99 45.26 3.51
832 844 7.924412 CCAGACTGAATAAAATGAAATGGATGG 59.076 37.037 3.32 0.00 0.00 3.51
833 845 7.924412 CAGACTGAATAAAATGAAATGGATGGG 59.076 37.037 0.00 0.00 0.00 4.00
834 846 7.620888 AGACTGAATAAAATGAAATGGATGGGT 59.379 33.333 0.00 0.00 0.00 4.51
835 847 8.837099 ACTGAATAAAATGAAATGGATGGGTA 57.163 30.769 0.00 0.00 0.00 3.69
836 848 8.917088 ACTGAATAAAATGAAATGGATGGGTAG 58.083 33.333 0.00 0.00 0.00 3.18
837 849 8.248904 TGAATAAAATGAAATGGATGGGTAGG 57.751 34.615 0.00 0.00 0.00 3.18
838 850 6.670695 ATAAAATGAAATGGATGGGTAGGC 57.329 37.500 0.00 0.00 0.00 3.93
839 851 2.276732 ATGAAATGGATGGGTAGGCG 57.723 50.000 0.00 0.00 0.00 5.52
840 852 0.182537 TGAAATGGATGGGTAGGCGG 59.817 55.000 0.00 0.00 0.00 6.13
841 853 0.182775 GAAATGGATGGGTAGGCGGT 59.817 55.000 0.00 0.00 0.00 5.68
842 854 1.418637 GAAATGGATGGGTAGGCGGTA 59.581 52.381 0.00 0.00 0.00 4.02
843 855 1.742308 AATGGATGGGTAGGCGGTAT 58.258 50.000 0.00 0.00 0.00 2.73
844 856 0.984230 ATGGATGGGTAGGCGGTATG 59.016 55.000 0.00 0.00 0.00 2.39
859 871 3.707793 CGGTATGAAGAAGCTGTCTACC 58.292 50.000 0.00 0.00 34.56 3.18
861 873 4.688021 GGTATGAAGAAGCTGTCTACCAG 58.312 47.826 0.00 0.00 44.53 4.00
865 877 3.764434 TGAAGAAGCTGTCTACCAGTAGG 59.236 47.826 5.04 0.00 43.55 3.18
867 879 4.258457 AGAAGCTGTCTACCAGTAGGAT 57.742 45.455 5.04 0.00 43.55 3.24
868 880 3.957497 AGAAGCTGTCTACCAGTAGGATG 59.043 47.826 5.04 0.00 43.55 3.51
869 881 3.390175 AGCTGTCTACCAGTAGGATGT 57.610 47.619 5.04 0.00 43.55 3.06
870 882 3.027412 AGCTGTCTACCAGTAGGATGTG 58.973 50.000 5.04 0.00 43.55 3.21
873 885 4.585162 GCTGTCTACCAGTAGGATGTGTAT 59.415 45.833 5.04 0.00 43.55 2.29
877 889 8.859236 TGTCTACCAGTAGGATGTGTATATAC 57.141 38.462 5.89 5.89 38.69 1.47
918 946 3.375642 CTGCCTATCTATCACACACACG 58.624 50.000 0.00 0.00 0.00 4.49
919 947 2.128035 GCCTATCTATCACACACACGC 58.872 52.381 0.00 0.00 0.00 5.34
921 949 3.375642 CCTATCTATCACACACACGCAG 58.624 50.000 0.00 0.00 0.00 5.18
922 950 3.066760 CCTATCTATCACACACACGCAGA 59.933 47.826 0.00 0.00 0.00 4.26
923 951 2.636768 TCTATCACACACACGCAGAG 57.363 50.000 0.00 0.00 0.00 3.35
942 970 1.134461 AGCCATACAGAAGCTGCTCTG 60.134 52.381 20.22 20.22 46.94 3.35
954 982 1.000731 GCTGCTCTGTCTGTCTGTCTT 59.999 52.381 0.00 0.00 0.00 3.01
956 984 3.673052 GCTGCTCTGTCTGTCTGTCTTAG 60.673 52.174 0.00 0.00 0.00 2.18
963 991 7.242322 TCTGTCTGTCTGTCTTAGTCTACTA 57.758 40.000 0.00 0.00 0.00 1.82
966 994 5.585844 GTCTGTCTGTCTTAGTCTACTACCC 59.414 48.000 0.00 0.00 0.00 3.69
969 997 5.125356 GTCTGTCTTAGTCTACTACCCCTC 58.875 50.000 0.00 0.00 0.00 4.30
970 998 4.165758 TCTGTCTTAGTCTACTACCCCTCC 59.834 50.000 0.00 0.00 0.00 4.30
971 999 4.117632 TGTCTTAGTCTACTACCCCTCCT 58.882 47.826 0.00 0.00 0.00 3.69
972 1000 4.079901 TGTCTTAGTCTACTACCCCTCCTG 60.080 50.000 0.00 0.00 0.00 3.86
1077 1108 6.726035 GCTAGCTAGCTTAATTCGATATCG 57.274 41.667 33.71 19.14 45.62 2.92
1082 1113 5.289675 GCTAGCTTAATTCGATATCGCATGT 59.710 40.000 20.34 8.55 39.60 3.21
1083 1114 6.472486 GCTAGCTTAATTCGATATCGCATGTA 59.528 38.462 20.34 7.67 39.60 2.29
1084 1115 6.633668 AGCTTAATTCGATATCGCATGTAC 57.366 37.500 20.34 6.28 39.60 2.90
1085 1116 6.390721 AGCTTAATTCGATATCGCATGTACT 58.609 36.000 20.34 8.31 39.60 2.73
2243 2307 0.107703 GGGACAAGATCATGGACGCA 60.108 55.000 2.59 0.00 0.00 5.24
2276 2349 1.069823 GAGGACATCATGCTGGACGAT 59.930 52.381 1.02 0.00 0.00 3.73
2552 2625 0.810823 ACGACGTCGAGGAGGAGATC 60.811 60.000 41.52 0.00 43.02 2.75
2798 2881 7.333423 CCTGTAATATTGTAATCCATGTACCCG 59.667 40.741 0.00 0.00 0.00 5.28
2800 2883 2.335316 TTGTAATCCATGTACCCGGC 57.665 50.000 0.00 0.00 0.00 6.13
2801 2884 0.470766 TGTAATCCATGTACCCGGCC 59.529 55.000 0.00 0.00 0.00 6.13
2802 2885 0.250597 GTAATCCATGTACCCGGCCC 60.251 60.000 0.00 0.00 0.00 5.80
2807 2890 2.045731 ATGTACCCGGCCCGTTTG 60.046 61.111 0.85 0.00 0.00 2.93
2808 2891 2.897762 ATGTACCCGGCCCGTTTGT 61.898 57.895 0.85 0.00 0.00 2.83
2809 2892 2.281692 GTACCCGGCCCGTTTGTT 60.282 61.111 0.85 0.00 0.00 2.83
2848 2931 5.335127 GCATGTAATTGCTCGAGTTTGATT 58.665 37.500 15.13 11.16 39.57 2.57
2869 2952 2.627945 ACTTTGACGCTTCTCACACAA 58.372 42.857 0.00 0.00 0.00 3.33
2887 2970 6.897966 TCACACAACCTCTATCCTCTATTCTT 59.102 38.462 0.00 0.00 0.00 2.52
2888 2971 8.059461 TCACACAACCTCTATCCTCTATTCTTA 58.941 37.037 0.00 0.00 0.00 2.10
2913 2997 2.394524 GACCTTAAAGTCGCGCGC 59.605 61.111 27.95 23.91 0.00 6.86
2915 2999 0.799534 GACCTTAAAGTCGCGCGCTA 60.800 55.000 30.48 17.01 0.00 4.26
2936 3020 2.542907 GCGCCCGTCCATGGTAATG 61.543 63.158 12.58 0.00 0.00 1.90
3015 3100 9.651913 ATTTTGTATATTAAGGCTTGGTGTTTG 57.348 29.630 10.69 0.00 0.00 2.93
3017 3102 8.865420 TTGTATATTAAGGCTTGGTGTTTGTA 57.135 30.769 10.69 0.00 0.00 2.41
3019 3104 8.322828 TGTATATTAAGGCTTGGTGTTTGTAGA 58.677 33.333 10.69 0.00 0.00 2.59
3020 3105 7.865706 ATATTAAGGCTTGGTGTTTGTAGAG 57.134 36.000 10.69 0.00 0.00 2.43
3022 3107 3.127425 AGGCTTGGTGTTTGTAGAGAC 57.873 47.619 0.00 0.00 0.00 3.36
3026 3111 4.278419 GGCTTGGTGTTTGTAGAGACAATT 59.722 41.667 0.00 0.00 44.96 2.32
3029 3114 7.078228 GCTTGGTGTTTGTAGAGACAATTAAG 58.922 38.462 0.00 0.00 44.96 1.85
3030 3115 7.041372 GCTTGGTGTTTGTAGAGACAATTAAGA 60.041 37.037 6.78 0.00 44.96 2.10
3031 3116 8.740123 TTGGTGTTTGTAGAGACAATTAAGAA 57.260 30.769 0.00 0.00 44.96 2.52
3032 3117 8.918202 TGGTGTTTGTAGAGACAATTAAGAAT 57.082 30.769 0.00 0.00 44.96 2.40
3071 3156 6.946009 TGATGGCATCAGAAATATCATCATGT 59.054 34.615 25.63 0.00 35.90 3.21
3072 3157 6.812879 TGGCATCAGAAATATCATCATGTC 57.187 37.500 0.00 0.00 0.00 3.06
3073 3158 6.540083 TGGCATCAGAAATATCATCATGTCT 58.460 36.000 0.00 0.00 0.00 3.41
3074 3159 7.682628 TGGCATCAGAAATATCATCATGTCTA 58.317 34.615 0.00 0.00 0.00 2.59
3077 3162 9.989869 GCATCAGAAATATCATCATGTCTAATG 57.010 33.333 0.00 0.00 0.00 1.90
3078 3163 9.989869 CATCAGAAATATCATCATGTCTAATGC 57.010 33.333 0.00 0.00 0.00 3.56
3079 3164 9.734984 ATCAGAAATATCATCATGTCTAATGCA 57.265 29.630 0.00 0.00 0.00 3.96
3083 3168 9.622004 GAAATATCATCATGTCTAATGCAAAGG 57.378 33.333 0.00 0.00 0.00 3.11
3085 3170 4.209538 TCATCATGTCTAATGCAAAGGGG 58.790 43.478 0.00 0.00 0.00 4.79
3089 3174 1.427368 TGTCTAATGCAAAGGGGGTGT 59.573 47.619 0.00 0.00 0.00 4.16
3090 3175 2.092323 GTCTAATGCAAAGGGGGTGTC 58.908 52.381 0.00 0.00 0.00 3.67
3091 3176 1.707989 TCTAATGCAAAGGGGGTGTCA 59.292 47.619 0.00 0.00 0.00 3.58
3092 3177 2.094675 CTAATGCAAAGGGGGTGTCAG 58.905 52.381 0.00 0.00 0.00 3.51
3094 3179 0.251341 ATGCAAAGGGGGTGTCAGTC 60.251 55.000 0.00 0.00 0.00 3.51
3095 3180 1.150536 GCAAAGGGGGTGTCAGTCA 59.849 57.895 0.00 0.00 0.00 3.41
3096 3181 0.251341 GCAAAGGGGGTGTCAGTCAT 60.251 55.000 0.00 0.00 0.00 3.06
3098 3183 2.357154 GCAAAGGGGGTGTCAGTCATAT 60.357 50.000 0.00 0.00 0.00 1.78
3099 3184 3.877735 GCAAAGGGGGTGTCAGTCATATT 60.878 47.826 0.00 0.00 0.00 1.28
3100 3185 4.627741 GCAAAGGGGGTGTCAGTCATATTA 60.628 45.833 0.00 0.00 0.00 0.98
3101 3186 5.694995 CAAAGGGGGTGTCAGTCATATTAT 58.305 41.667 0.00 0.00 0.00 1.28
3102 3187 5.994416 AAGGGGGTGTCAGTCATATTATT 57.006 39.130 0.00 0.00 0.00 1.40
3105 3190 7.648177 AGGGGGTGTCAGTCATATTATTAAT 57.352 36.000 0.00 0.00 0.00 1.40
3106 3191 8.751215 AGGGGGTGTCAGTCATATTATTAATA 57.249 34.615 0.00 0.00 0.00 0.98
3107 3192 9.177927 AGGGGGTGTCAGTCATATTATTAATAA 57.822 33.333 10.27 10.27 0.00 1.40
3152 3237 7.489239 TGAATTAAAACTAATGGAAAGGGGG 57.511 36.000 0.00 0.00 0.00 5.40
3153 3238 7.020009 TGAATTAAAACTAATGGAAAGGGGGT 58.980 34.615 0.00 0.00 0.00 4.95
3154 3239 6.867519 ATTAAAACTAATGGAAAGGGGGTG 57.132 37.500 0.00 0.00 0.00 4.61
3155 3240 3.915346 AAACTAATGGAAAGGGGGTGT 57.085 42.857 0.00 0.00 0.00 4.16
3156 3241 3.451402 AACTAATGGAAAGGGGGTGTC 57.549 47.619 0.00 0.00 0.00 3.67
3157 3242 2.354328 ACTAATGGAAAGGGGGTGTCA 58.646 47.619 0.00 0.00 0.00 3.58
3158 3243 2.308866 ACTAATGGAAAGGGGGTGTCAG 59.691 50.000 0.00 0.00 0.00 3.51
3159 3244 1.158007 AATGGAAAGGGGGTGTCAGT 58.842 50.000 0.00 0.00 0.00 3.41
3160 3245 0.698818 ATGGAAAGGGGGTGTCAGTC 59.301 55.000 0.00 0.00 0.00 3.51
3161 3246 0.696143 TGGAAAGGGGGTGTCAGTCA 60.696 55.000 0.00 0.00 0.00 3.41
3162 3247 0.698818 GGAAAGGGGGTGTCAGTCAT 59.301 55.000 0.00 0.00 0.00 3.06
3163 3248 1.075536 GGAAAGGGGGTGTCAGTCATT 59.924 52.381 0.00 0.00 0.00 2.57
3164 3249 2.437413 GAAAGGGGGTGTCAGTCATTC 58.563 52.381 0.00 0.00 0.00 2.67
3165 3250 0.698818 AAGGGGGTGTCAGTCATTCC 59.301 55.000 0.00 0.00 0.00 3.01
3166 3251 0.475632 AGGGGGTGTCAGTCATTCCA 60.476 55.000 0.00 0.00 0.00 3.53
3180 3265 0.328258 ATTCCAGTAAGCCCGCAACT 59.672 50.000 0.00 0.00 0.00 3.16
3353 3446 2.849943 TGGGTGGTGCTGGAAATATAGT 59.150 45.455 0.00 0.00 0.00 2.12
3594 3737 5.263599 AGGCAGATGAATAAATCACCACAA 58.736 37.500 0.00 0.00 41.93 3.33
3604 3747 9.076781 TGAATAAATCACCACAAAGAAAGATGA 57.923 29.630 0.00 0.00 31.50 2.92
3615 3758 5.595952 ACAAAGAAAGATGACAAGAGCCTTT 59.404 36.000 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.203437 AAACCCTTGGCCGGTGAC 60.203 61.111 1.90 0.00 32.55 3.67
17 18 0.107165 CTCTTGGGATCGGGGGAAAC 60.107 60.000 0.00 0.00 0.00 2.78
18 19 1.921869 GCTCTTGGGATCGGGGGAAA 61.922 60.000 0.00 0.00 0.00 3.13
19 20 2.375345 GCTCTTGGGATCGGGGGAA 61.375 63.158 0.00 0.00 0.00 3.97
20 21 2.768344 GCTCTTGGGATCGGGGGA 60.768 66.667 0.00 0.00 0.00 4.81
21 22 3.878667 GGCTCTTGGGATCGGGGG 61.879 72.222 0.00 0.00 0.00 5.40
22 23 3.878667 GGGCTCTTGGGATCGGGG 61.879 72.222 0.00 0.00 0.00 5.73
23 24 3.878667 GGGGCTCTTGGGATCGGG 61.879 72.222 0.00 0.00 0.00 5.14
24 25 3.089874 TGGGGCTCTTGGGATCGG 61.090 66.667 0.00 0.00 0.00 4.18
25 26 2.190578 GTGGGGCTCTTGGGATCG 59.809 66.667 0.00 0.00 0.00 3.69
26 27 1.649271 ATGGTGGGGCTCTTGGGATC 61.649 60.000 0.00 0.00 0.00 3.36
27 28 1.623686 ATGGTGGGGCTCTTGGGAT 60.624 57.895 0.00 0.00 0.00 3.85
28 29 2.204291 ATGGTGGGGCTCTTGGGA 60.204 61.111 0.00 0.00 0.00 4.37
29 30 2.276740 GATGGTGGGGCTCTTGGG 59.723 66.667 0.00 0.00 0.00 4.12
30 31 2.153898 TTGGATGGTGGGGCTCTTGG 62.154 60.000 0.00 0.00 0.00 3.61
31 32 0.032813 ATTGGATGGTGGGGCTCTTG 60.033 55.000 0.00 0.00 0.00 3.02
32 33 0.259938 GATTGGATGGTGGGGCTCTT 59.740 55.000 0.00 0.00 0.00 2.85
33 34 0.920763 TGATTGGATGGTGGGGCTCT 60.921 55.000 0.00 0.00 0.00 4.09
34 35 0.753111 GTGATTGGATGGTGGGGCTC 60.753 60.000 0.00 0.00 0.00 4.70
35 36 1.307647 GTGATTGGATGGTGGGGCT 59.692 57.895 0.00 0.00 0.00 5.19
36 37 1.758122 GGTGATTGGATGGTGGGGC 60.758 63.158 0.00 0.00 0.00 5.80
37 38 1.453745 CGGTGATTGGATGGTGGGG 60.454 63.158 0.00 0.00 0.00 4.96
38 39 2.120909 GCGGTGATTGGATGGTGGG 61.121 63.158 0.00 0.00 0.00 4.61
39 40 2.120909 GGCGGTGATTGGATGGTGG 61.121 63.158 0.00 0.00 0.00 4.61
40 41 2.120909 GGGCGGTGATTGGATGGTG 61.121 63.158 0.00 0.00 0.00 4.17
41 42 2.148723 TTGGGCGGTGATTGGATGGT 62.149 55.000 0.00 0.00 0.00 3.55
42 43 0.756442 ATTGGGCGGTGATTGGATGG 60.756 55.000 0.00 0.00 0.00 3.51
43 44 1.608590 GTATTGGGCGGTGATTGGATG 59.391 52.381 0.00 0.00 0.00 3.51
44 45 1.478654 GGTATTGGGCGGTGATTGGAT 60.479 52.381 0.00 0.00 0.00 3.41
45 46 0.106918 GGTATTGGGCGGTGATTGGA 60.107 55.000 0.00 0.00 0.00 3.53
46 47 1.106944 GGGTATTGGGCGGTGATTGG 61.107 60.000 0.00 0.00 0.00 3.16
47 48 1.444119 CGGGTATTGGGCGGTGATTG 61.444 60.000 0.00 0.00 0.00 2.67
48 49 1.153046 CGGGTATTGGGCGGTGATT 60.153 57.895 0.00 0.00 0.00 2.57
49 50 2.508928 CGGGTATTGGGCGGTGAT 59.491 61.111 0.00 0.00 0.00 3.06
50 51 3.788145 CCGGGTATTGGGCGGTGA 61.788 66.667 0.00 0.00 0.00 4.02
51 52 3.114825 ATCCGGGTATTGGGCGGTG 62.115 63.158 0.00 0.00 0.00 4.94
52 53 2.770904 ATCCGGGTATTGGGCGGT 60.771 61.111 0.00 0.00 0.00 5.68
53 54 2.032071 GATCCGGGTATTGGGCGG 59.968 66.667 0.00 0.00 0.00 6.13
54 55 2.032071 GGATCCGGGTATTGGGCG 59.968 66.667 0.00 0.00 0.00 6.13
55 56 2.032071 CGGATCCGGGTATTGGGC 59.968 66.667 26.95 0.00 35.56 5.36
56 57 1.370064 GTCGGATCCGGGTATTGGG 59.630 63.158 32.79 2.53 40.25 4.12
57 58 1.006571 CGTCGGATCCGGGTATTGG 60.007 63.158 32.79 11.20 40.25 3.16
58 59 0.039437 CTCGTCGGATCCGGGTATTG 60.039 60.000 32.79 16.17 40.25 1.90
59 60 1.803366 GCTCGTCGGATCCGGGTATT 61.803 60.000 32.79 0.00 40.25 1.89
60 61 2.266627 GCTCGTCGGATCCGGGTAT 61.267 63.158 32.79 0.00 40.25 2.73
61 62 2.903855 GCTCGTCGGATCCGGGTA 60.904 66.667 32.79 17.14 40.25 3.69
63 64 3.774959 CTTGCTCGTCGGATCCGGG 62.775 68.421 32.79 24.10 40.25 5.73
64 65 2.278857 CTTGCTCGTCGGATCCGG 60.279 66.667 32.79 18.56 40.25 5.14
65 66 2.278857 CCTTGCTCGTCGGATCCG 60.279 66.667 28.62 28.62 41.35 4.18
66 67 2.586357 GCCTTGCTCGTCGGATCC 60.586 66.667 0.00 0.00 0.00 3.36
67 68 2.586357 GGCCTTGCTCGTCGGATC 60.586 66.667 0.00 0.00 0.00 3.36
68 69 3.390521 TGGCCTTGCTCGTCGGAT 61.391 61.111 3.32 0.00 0.00 4.18
69 70 4.373116 GTGGCCTTGCTCGTCGGA 62.373 66.667 3.32 0.00 0.00 4.55
70 71 4.680237 TGTGGCCTTGCTCGTCGG 62.680 66.667 3.32 0.00 0.00 4.79
71 72 3.414700 GTGTGGCCTTGCTCGTCG 61.415 66.667 3.32 0.00 0.00 5.12
72 73 3.050275 GGTGTGGCCTTGCTCGTC 61.050 66.667 3.32 0.00 0.00 4.20
73 74 4.988598 CGGTGTGGCCTTGCTCGT 62.989 66.667 3.32 0.00 34.25 4.18
74 75 4.680237 TCGGTGTGGCCTTGCTCG 62.680 66.667 3.32 1.81 34.25 5.03
75 76 2.281484 TTCGGTGTGGCCTTGCTC 60.281 61.111 3.32 0.00 34.25 4.26
76 77 2.281761 CTTCGGTGTGGCCTTGCT 60.282 61.111 3.32 0.00 34.25 3.91
77 78 4.043200 GCTTCGGTGTGGCCTTGC 62.043 66.667 3.32 0.00 34.25 4.01
78 79 3.365265 GGCTTCGGTGTGGCCTTG 61.365 66.667 3.32 0.00 42.31 3.61
81 82 1.972660 ATCTAGGCTTCGGTGTGGCC 61.973 60.000 0.00 0.00 45.57 5.36
82 83 0.530870 GATCTAGGCTTCGGTGTGGC 60.531 60.000 0.00 0.00 0.00 5.01
83 84 0.249073 CGATCTAGGCTTCGGTGTGG 60.249 60.000 0.00 0.00 0.00 4.17
84 85 0.738975 TCGATCTAGGCTTCGGTGTG 59.261 55.000 7.19 0.00 36.08 3.82
85 86 1.025812 CTCGATCTAGGCTTCGGTGT 58.974 55.000 7.19 0.00 36.08 4.16
86 87 0.318275 GCTCGATCTAGGCTTCGGTG 60.318 60.000 7.19 2.85 36.08 4.94
87 88 1.787057 CGCTCGATCTAGGCTTCGGT 61.787 60.000 7.19 0.00 36.08 4.69
88 89 1.081774 CGCTCGATCTAGGCTTCGG 60.082 63.158 7.19 0.43 36.08 4.30
89 90 1.081774 CCGCTCGATCTAGGCTTCG 60.082 63.158 0.00 0.00 36.72 3.79
90 91 1.173444 TCCCGCTCGATCTAGGCTTC 61.173 60.000 0.00 0.00 0.00 3.86
91 92 0.540830 ATCCCGCTCGATCTAGGCTT 60.541 55.000 0.00 0.00 0.00 4.35
92 93 0.328592 TATCCCGCTCGATCTAGGCT 59.671 55.000 0.00 0.00 0.00 4.58
93 94 1.133407 CTTATCCCGCTCGATCTAGGC 59.867 57.143 0.00 0.00 0.00 3.93
94 95 1.746220 CCTTATCCCGCTCGATCTAGG 59.254 57.143 0.00 0.00 0.00 3.02
95 96 2.162608 CACCTTATCCCGCTCGATCTAG 59.837 54.545 0.00 0.00 0.00 2.43
96 97 2.160205 CACCTTATCCCGCTCGATCTA 58.840 52.381 0.00 0.00 0.00 1.98
97 98 0.962489 CACCTTATCCCGCTCGATCT 59.038 55.000 0.00 0.00 0.00 2.75
98 99 0.959553 TCACCTTATCCCGCTCGATC 59.040 55.000 0.00 0.00 0.00 3.69
99 100 1.341531 CTTCACCTTATCCCGCTCGAT 59.658 52.381 0.00 0.00 0.00 3.59
100 101 0.744874 CTTCACCTTATCCCGCTCGA 59.255 55.000 0.00 0.00 0.00 4.04
101 102 0.249489 CCTTCACCTTATCCCGCTCG 60.249 60.000 0.00 0.00 0.00 5.03
102 103 1.069358 CTCCTTCACCTTATCCCGCTC 59.931 57.143 0.00 0.00 0.00 5.03
103 104 1.123928 CTCCTTCACCTTATCCCGCT 58.876 55.000 0.00 0.00 0.00 5.52
104 105 1.120530 TCTCCTTCACCTTATCCCGC 58.879 55.000 0.00 0.00 0.00 6.13
105 106 2.965831 TCATCTCCTTCACCTTATCCCG 59.034 50.000 0.00 0.00 0.00 5.14
106 107 4.745172 GCTTCATCTCCTTCACCTTATCCC 60.745 50.000 0.00 0.00 0.00 3.85
107 108 4.102367 AGCTTCATCTCCTTCACCTTATCC 59.898 45.833 0.00 0.00 0.00 2.59
108 109 5.055812 CAGCTTCATCTCCTTCACCTTATC 58.944 45.833 0.00 0.00 0.00 1.75
109 110 4.141528 CCAGCTTCATCTCCTTCACCTTAT 60.142 45.833 0.00 0.00 0.00 1.73
110 111 3.198635 CCAGCTTCATCTCCTTCACCTTA 59.801 47.826 0.00 0.00 0.00 2.69
111 112 2.026449 CCAGCTTCATCTCCTTCACCTT 60.026 50.000 0.00 0.00 0.00 3.50
112 113 1.558756 CCAGCTTCATCTCCTTCACCT 59.441 52.381 0.00 0.00 0.00 4.00
113 114 2.016096 GCCAGCTTCATCTCCTTCACC 61.016 57.143 0.00 0.00 0.00 4.02
114 115 1.377536 GCCAGCTTCATCTCCTTCAC 58.622 55.000 0.00 0.00 0.00 3.18
115 116 0.107993 CGCCAGCTTCATCTCCTTCA 60.108 55.000 0.00 0.00 0.00 3.02
116 117 1.435408 GCGCCAGCTTCATCTCCTTC 61.435 60.000 0.00 0.00 41.01 3.46
117 118 1.451028 GCGCCAGCTTCATCTCCTT 60.451 57.895 0.00 0.00 41.01 3.36
118 119 2.188994 GCGCCAGCTTCATCTCCT 59.811 61.111 0.00 0.00 41.01 3.69
129 130 4.147449 TGGATCGACCAGCGCCAG 62.147 66.667 2.29 0.00 44.64 4.85
145 146 4.247380 GGCCGGCCTCCAGATCTG 62.247 72.222 38.76 16.24 0.00 2.90
166 167 3.585990 CATGGCGGCCGTGATTCC 61.586 66.667 32.71 19.37 42.73 3.01
167 168 2.513666 TCATGGCGGCCGTGATTC 60.514 61.111 34.18 9.35 43.70 2.52
168 169 2.514592 CTCATGGCGGCCGTGATT 60.515 61.111 36.63 6.60 46.79 2.57
178 179 2.048603 GGTGTTGGGAGCTCATGGC 61.049 63.158 17.19 3.39 42.19 4.40
179 180 1.746615 CGGTGTTGGGAGCTCATGG 60.747 63.158 17.19 0.00 0.00 3.66
180 181 1.746615 CCGGTGTTGGGAGCTCATG 60.747 63.158 17.19 0.00 0.00 3.07
181 182 2.671070 CCGGTGTTGGGAGCTCAT 59.329 61.111 17.19 0.00 0.00 2.90
208 209 3.344137 TTCCTCGGCTTCCATGGGC 62.344 63.158 13.02 8.29 0.00 5.36
209 210 1.153086 CTTCCTCGGCTTCCATGGG 60.153 63.158 13.02 0.00 0.00 4.00
210 211 0.462759 GTCTTCCTCGGCTTCCATGG 60.463 60.000 4.97 4.97 0.00 3.66
211 212 0.462759 GGTCTTCCTCGGCTTCCATG 60.463 60.000 0.00 0.00 0.00 3.66
212 213 1.908483 GGTCTTCCTCGGCTTCCAT 59.092 57.895 0.00 0.00 0.00 3.41
213 214 2.646175 CGGTCTTCCTCGGCTTCCA 61.646 63.158 0.00 0.00 0.00 3.53
214 215 2.184579 CGGTCTTCCTCGGCTTCC 59.815 66.667 0.00 0.00 0.00 3.46
215 216 2.184579 CCGGTCTTCCTCGGCTTC 59.815 66.667 0.00 0.00 39.78 3.86
220 221 3.691342 TGTGGCCGGTCTTCCTCG 61.691 66.667 7.97 0.00 0.00 4.63
221 222 2.047179 GTGTGGCCGGTCTTCCTC 60.047 66.667 7.97 0.00 0.00 3.71
222 223 2.847234 TGTGTGGCCGGTCTTCCT 60.847 61.111 7.97 0.00 0.00 3.36
223 224 2.668550 GTGTGTGGCCGGTCTTCC 60.669 66.667 7.97 0.00 0.00 3.46
224 225 2.668550 GGTGTGTGGCCGGTCTTC 60.669 66.667 7.97 0.54 0.00 2.87
225 226 4.265056 GGGTGTGTGGCCGGTCTT 62.265 66.667 7.97 0.00 0.00 3.01
237 238 4.722700 GATGGTGGCTGCGGGTGT 62.723 66.667 0.00 0.00 0.00 4.16
247 248 4.838152 CCCTGCGACGGATGGTGG 62.838 72.222 2.47 0.00 0.00 4.61
248 249 3.309436 TTCCCTGCGACGGATGGTG 62.309 63.158 10.27 0.43 0.00 4.17
249 250 3.000819 TTCCCTGCGACGGATGGT 61.001 61.111 10.27 0.00 0.00 3.55
250 251 2.202932 CTTCCCTGCGACGGATGG 60.203 66.667 4.27 4.27 0.00 3.51
251 252 2.202932 CCTTCCCTGCGACGGATG 60.203 66.667 0.00 0.00 31.29 3.51
252 253 2.683933 ACCTTCCCTGCGACGGAT 60.684 61.111 0.00 0.00 33.98 4.18
253 254 3.691342 CACCTTCCCTGCGACGGA 61.691 66.667 0.00 0.00 33.98 4.69
297 298 4.335647 AGAGCTTGGTGTGCCGGG 62.336 66.667 2.18 0.00 37.67 5.73
298 299 2.743928 GAGAGCTTGGTGTGCCGG 60.744 66.667 0.00 0.00 37.67 6.13
299 300 2.743928 GGAGAGCTTGGTGTGCCG 60.744 66.667 0.00 0.00 37.67 5.69
300 301 2.743928 CGGAGAGCTTGGTGTGCC 60.744 66.667 0.00 0.00 0.00 5.01
301 302 3.426568 GCGGAGAGCTTGGTGTGC 61.427 66.667 0.00 0.00 44.04 4.57
302 303 3.114616 CGCGGAGAGCTTGGTGTG 61.115 66.667 0.00 0.00 45.59 3.82
316 317 4.688419 CTGTTGTTGCCTGGCGCG 62.688 66.667 14.98 0.00 42.08 6.86
318 319 1.915614 CTAGCTGTTGTTGCCTGGCG 61.916 60.000 14.98 0.00 0.00 5.69
319 320 1.878775 CTAGCTGTTGTTGCCTGGC 59.121 57.895 12.87 12.87 0.00 4.85
320 321 1.589716 GGCTAGCTGTTGTTGCCTGG 61.590 60.000 15.72 0.00 40.36 4.45
321 322 1.589716 GGGCTAGCTGTTGTTGCCTG 61.590 60.000 15.72 0.00 42.84 4.85
322 323 1.303643 GGGCTAGCTGTTGTTGCCT 60.304 57.895 15.72 0.00 42.84 4.75
323 324 2.343426 GGGGCTAGCTGTTGTTGCC 61.343 63.158 15.72 4.17 42.56 4.52
324 325 2.690778 CGGGGCTAGCTGTTGTTGC 61.691 63.158 15.72 0.00 0.00 4.17
325 326 2.690778 GCGGGGCTAGCTGTTGTTG 61.691 63.158 15.72 0.00 0.00 3.33
326 327 2.359975 GCGGGGCTAGCTGTTGTT 60.360 61.111 15.72 0.00 0.00 2.83
327 328 4.410400 GGCGGGGCTAGCTGTTGT 62.410 66.667 15.72 0.00 34.52 3.32
328 329 4.408821 TGGCGGGGCTAGCTGTTG 62.409 66.667 15.72 3.62 34.52 3.33
329 330 4.410400 GTGGCGGGGCTAGCTGTT 62.410 66.667 15.72 0.00 34.52 3.16
339 340 4.410400 GAGGAAGGTGGTGGCGGG 62.410 72.222 0.00 0.00 0.00 6.13
340 341 4.760047 CGAGGAAGGTGGTGGCGG 62.760 72.222 0.00 0.00 0.00 6.13
341 342 3.691342 TCGAGGAAGGTGGTGGCG 61.691 66.667 0.00 0.00 0.00 5.69
342 343 2.047179 GTCGAGGAAGGTGGTGGC 60.047 66.667 0.00 0.00 0.00 5.01
343 344 2.261671 CGTCGAGGAAGGTGGTGG 59.738 66.667 0.00 0.00 0.00 4.61
344 345 2.432628 GCGTCGAGGAAGGTGGTG 60.433 66.667 9.75 0.00 0.00 4.17
345 346 3.692406 GGCGTCGAGGAAGGTGGT 61.692 66.667 9.75 0.00 0.00 4.16
346 347 4.796231 CGGCGTCGAGGAAGGTGG 62.796 72.222 1.44 0.00 39.00 4.61
367 368 4.883354 ATAGCTGCCGGCAAGCCC 62.883 66.667 33.13 21.82 44.79 5.19
368 369 3.282920 GATAGCTGCCGGCAAGCC 61.283 66.667 33.13 23.87 44.79 4.35
369 370 2.203126 AGATAGCTGCCGGCAAGC 60.203 61.111 32.09 31.55 44.79 4.01
370 371 0.879400 CAGAGATAGCTGCCGGCAAG 60.879 60.000 32.09 24.03 44.79 4.01
371 372 1.144716 CAGAGATAGCTGCCGGCAA 59.855 57.895 32.09 17.23 44.79 4.52
372 373 2.800541 CCAGAGATAGCTGCCGGCA 61.801 63.158 30.59 30.59 44.79 5.69
373 374 2.030262 CCAGAGATAGCTGCCGGC 59.970 66.667 22.73 22.73 42.19 6.13
374 375 1.068753 CACCAGAGATAGCTGCCGG 59.931 63.158 0.00 0.00 34.56 6.13
375 376 1.068753 CCACCAGAGATAGCTGCCG 59.931 63.158 0.00 0.00 34.56 5.69
376 377 1.227793 GCCACCAGAGATAGCTGCC 60.228 63.158 0.00 0.00 34.56 4.85
377 378 1.593750 CGCCACCAGAGATAGCTGC 60.594 63.158 0.00 0.00 34.56 5.25
378 379 1.068753 CCGCCACCAGAGATAGCTG 59.931 63.158 0.00 0.00 35.66 4.24
379 380 2.801631 GCCGCCACCAGAGATAGCT 61.802 63.158 0.00 0.00 0.00 3.32
380 381 2.280457 GCCGCCACCAGAGATAGC 60.280 66.667 0.00 0.00 0.00 2.97
381 382 2.028190 CGCCGCCACCAGAGATAG 59.972 66.667 0.00 0.00 0.00 2.08
382 383 2.441348 TCGCCGCCACCAGAGATA 60.441 61.111 0.00 0.00 0.00 1.98
383 384 3.842923 CTCGCCGCCACCAGAGAT 61.843 66.667 0.00 0.00 32.84 2.75
385 386 3.781770 GATCTCGCCGCCACCAGAG 62.782 68.421 0.00 0.00 0.00 3.35
386 387 3.838271 GATCTCGCCGCCACCAGA 61.838 66.667 0.00 0.00 0.00 3.86
387 388 3.842923 AGATCTCGCCGCCACCAG 61.843 66.667 0.00 0.00 0.00 4.00
388 389 4.147449 CAGATCTCGCCGCCACCA 62.147 66.667 0.00 0.00 0.00 4.17
389 390 4.899239 CCAGATCTCGCCGCCACC 62.899 72.222 0.00 0.00 0.00 4.61
390 391 3.781770 CTCCAGATCTCGCCGCCAC 62.782 68.421 0.00 0.00 0.00 5.01
391 392 3.531207 CTCCAGATCTCGCCGCCA 61.531 66.667 0.00 0.00 0.00 5.69
392 393 4.292178 CCTCCAGATCTCGCCGCC 62.292 72.222 0.00 0.00 0.00 6.13
393 394 4.292178 CCCTCCAGATCTCGCCGC 62.292 72.222 0.00 0.00 0.00 6.53
394 395 2.519541 TCCCTCCAGATCTCGCCG 60.520 66.667 0.00 0.00 0.00 6.46
395 396 2.206536 CCTCCCTCCAGATCTCGCC 61.207 68.421 0.00 0.00 0.00 5.54
396 397 2.206536 CCCTCCCTCCAGATCTCGC 61.207 68.421 0.00 0.00 0.00 5.03
397 398 1.532794 CCCCTCCCTCCAGATCTCG 60.533 68.421 0.00 0.00 0.00 4.04
398 399 1.152139 CCCCCTCCCTCCAGATCTC 60.152 68.421 0.00 0.00 0.00 2.75
399 400 1.238896 TTCCCCCTCCCTCCAGATCT 61.239 60.000 0.00 0.00 0.00 2.75
400 401 0.766288 CTTCCCCCTCCCTCCAGATC 60.766 65.000 0.00 0.00 0.00 2.75
401 402 1.319799 CTTCCCCCTCCCTCCAGAT 59.680 63.158 0.00 0.00 0.00 2.90
402 403 2.787866 CTTCCCCCTCCCTCCAGA 59.212 66.667 0.00 0.00 0.00 3.86
403 404 2.367512 CCTTCCCCCTCCCTCCAG 60.368 72.222 0.00 0.00 0.00 3.86
404 405 4.038804 CCCTTCCCCCTCCCTCCA 62.039 72.222 0.00 0.00 0.00 3.86
405 406 4.845307 CCCCTTCCCCCTCCCTCC 62.845 77.778 0.00 0.00 0.00 4.30
406 407 4.845307 CCCCCTTCCCCCTCCCTC 62.845 77.778 0.00 0.00 0.00 4.30
448 449 3.541713 CTCTGGGGCGACTAGGGC 61.542 72.222 0.00 0.00 0.00 5.19
449 450 2.840102 CCTCTGGGGCGACTAGGG 60.840 72.222 0.00 0.00 0.00 3.53
450 451 1.830408 CTCCTCTGGGGCGACTAGG 60.830 68.421 0.00 0.00 34.39 3.02
451 452 2.494530 GCTCCTCTGGGGCGACTAG 61.495 68.421 0.00 0.00 34.39 2.57
452 453 2.442272 GCTCCTCTGGGGCGACTA 60.442 66.667 0.00 0.00 34.39 2.59
486 487 0.104409 ATGTGATAGGTCCCTCCCCC 60.104 60.000 0.00 0.00 36.75 5.40
487 488 1.059913 CATGTGATAGGTCCCTCCCC 58.940 60.000 0.00 0.00 36.75 4.81
488 489 1.694696 GTCATGTGATAGGTCCCTCCC 59.305 57.143 0.00 0.00 36.75 4.30
489 490 1.694696 GGTCATGTGATAGGTCCCTCC 59.305 57.143 0.00 0.00 0.00 4.30
490 491 1.694696 GGGTCATGTGATAGGTCCCTC 59.305 57.143 0.00 0.00 0.00 4.30
491 492 1.009552 TGGGTCATGTGATAGGTCCCT 59.990 52.381 7.05 0.00 35.00 4.20
492 493 1.417890 CTGGGTCATGTGATAGGTCCC 59.582 57.143 0.00 0.00 0.00 4.46
493 494 1.417890 CCTGGGTCATGTGATAGGTCC 59.582 57.143 0.00 0.00 0.00 4.46
494 495 2.119495 ACCTGGGTCATGTGATAGGTC 58.881 52.381 0.00 0.00 33.48 3.85
495 496 2.270434 ACCTGGGTCATGTGATAGGT 57.730 50.000 0.00 9.40 33.73 3.08
496 497 4.982241 ATTACCTGGGTCATGTGATAGG 57.018 45.455 0.00 0.08 0.00 2.57
497 498 4.991056 CGAATTACCTGGGTCATGTGATAG 59.009 45.833 0.00 0.00 0.00 2.08
498 499 4.407621 ACGAATTACCTGGGTCATGTGATA 59.592 41.667 0.00 0.00 0.00 2.15
499 500 3.199946 ACGAATTACCTGGGTCATGTGAT 59.800 43.478 0.00 0.00 0.00 3.06
500 501 2.569853 ACGAATTACCTGGGTCATGTGA 59.430 45.455 0.00 0.00 0.00 3.58
501 502 2.985896 ACGAATTACCTGGGTCATGTG 58.014 47.619 0.00 0.00 0.00 3.21
502 503 3.713826 AACGAATTACCTGGGTCATGT 57.286 42.857 0.00 0.00 0.00 3.21
503 504 5.183228 AGTAAACGAATTACCTGGGTCATG 58.817 41.667 0.00 0.00 44.17 3.07
504 505 5.431179 AGTAAACGAATTACCTGGGTCAT 57.569 39.130 0.00 0.00 44.17 3.06
505 506 4.895668 AGTAAACGAATTACCTGGGTCA 57.104 40.909 0.00 0.00 44.17 4.02
506 507 6.212888 TCTAGTAAACGAATTACCTGGGTC 57.787 41.667 0.00 0.00 44.17 4.46
507 508 6.803366 ATCTAGTAAACGAATTACCTGGGT 57.197 37.500 0.00 0.00 44.17 4.51
508 509 9.257651 CTAAATCTAGTAAACGAATTACCTGGG 57.742 37.037 0.00 0.00 44.17 4.45
605 614 1.302033 CAAACCGAGCTGGCTCACT 60.302 57.895 20.39 3.72 43.94 3.41
645 657 3.305064 GCTATAGTAGTGGCTCAGCTCAC 60.305 52.174 9.57 9.57 32.66 3.51
662 674 5.046304 CCCTGCTGAAAAGGCTATAGCTATA 60.046 44.000 23.53 12.84 41.70 1.31
663 675 4.263243 CCCTGCTGAAAAGGCTATAGCTAT 60.263 45.833 23.53 11.77 41.70 2.97
664 676 3.071602 CCCTGCTGAAAAGGCTATAGCTA 59.928 47.826 23.53 0.00 41.70 3.32
665 677 2.158696 CCCTGCTGAAAAGGCTATAGCT 60.159 50.000 23.53 4.19 41.70 3.32
666 678 2.225467 CCCTGCTGAAAAGGCTATAGC 58.775 52.381 16.78 16.78 41.14 2.97
667 679 3.209410 CACCCTGCTGAAAAGGCTATAG 58.791 50.000 0.00 0.00 33.07 1.31
668 680 2.683742 GCACCCTGCTGAAAAGGCTATA 60.684 50.000 0.00 0.00 40.96 1.31
669 681 1.957113 GCACCCTGCTGAAAAGGCTAT 60.957 52.381 0.00 0.00 40.96 2.97
670 682 0.609131 GCACCCTGCTGAAAAGGCTA 60.609 55.000 0.00 0.00 40.96 3.93
671 683 1.905354 GCACCCTGCTGAAAAGGCT 60.905 57.895 0.00 0.00 40.96 4.58
672 684 2.653115 GCACCCTGCTGAAAAGGC 59.347 61.111 0.00 0.00 40.96 4.35
673 685 3.369921 GGCACCCTGCTGAAAAGG 58.630 61.111 0.00 0.00 44.28 3.11
680 692 1.750399 CATTTAGCGGCACCCTGCT 60.750 57.895 1.45 2.32 44.28 4.24
681 693 2.774799 CCATTTAGCGGCACCCTGC 61.775 63.158 1.45 0.00 44.08 4.85
682 694 3.513225 CCATTTAGCGGCACCCTG 58.487 61.111 1.45 0.00 0.00 4.45
689 701 1.064134 GAAAGCGGCCATTTAGCGG 59.936 57.895 2.24 0.00 35.78 5.52
690 702 0.523335 GTGAAAGCGGCCATTTAGCG 60.523 55.000 2.24 0.00 35.78 4.26
691 703 0.525761 TGTGAAAGCGGCCATTTAGC 59.474 50.000 2.24 0.00 0.00 3.09
692 704 3.296322 TTTGTGAAAGCGGCCATTTAG 57.704 42.857 2.24 0.00 0.00 1.85
693 705 3.951775 ATTTGTGAAAGCGGCCATTTA 57.048 38.095 2.24 0.00 0.00 1.40
694 706 2.837532 ATTTGTGAAAGCGGCCATTT 57.162 40.000 2.24 2.48 0.00 2.32
695 707 2.417243 GCTATTTGTGAAAGCGGCCATT 60.417 45.455 2.24 0.00 0.00 3.16
696 708 1.134946 GCTATTTGTGAAAGCGGCCAT 59.865 47.619 2.24 0.00 0.00 4.40
697 709 0.525761 GCTATTTGTGAAAGCGGCCA 59.474 50.000 2.24 0.00 0.00 5.36
698 710 0.179137 GGCTATTTGTGAAAGCGGCC 60.179 55.000 0.00 0.00 37.11 6.13
699 711 0.179137 GGGCTATTTGTGAAAGCGGC 60.179 55.000 0.00 0.00 37.11 6.53
700 712 0.098728 CGGGCTATTTGTGAAAGCGG 59.901 55.000 0.00 0.00 37.11 5.52
701 713 0.523335 GCGGGCTATTTGTGAAAGCG 60.523 55.000 0.00 0.00 37.11 4.68
702 714 0.811281 AGCGGGCTATTTGTGAAAGC 59.189 50.000 0.00 0.00 35.47 3.51
703 715 4.900635 AATAGCGGGCTATTTGTGAAAG 57.099 40.909 17.80 0.00 44.18 2.62
712 724 1.545651 GGCCTTCAAATAGCGGGCTAT 60.546 52.381 7.36 7.36 42.14 2.97
713 725 0.179029 GGCCTTCAAATAGCGGGCTA 60.179 55.000 2.42 2.42 42.14 3.93
714 726 1.453928 GGCCTTCAAATAGCGGGCT 60.454 57.895 0.00 0.00 42.14 5.19
715 727 2.490148 GGGCCTTCAAATAGCGGGC 61.490 63.158 0.84 0.00 41.80 6.13
716 728 2.186826 CGGGCCTTCAAATAGCGGG 61.187 63.158 0.84 0.00 0.00 6.13
717 729 2.834618 GCGGGCCTTCAAATAGCGG 61.835 63.158 0.84 0.00 0.00 5.52
718 730 2.715624 GCGGGCCTTCAAATAGCG 59.284 61.111 0.84 0.00 0.00 4.26
719 731 2.834618 CGGCGGGCCTTCAAATAGC 61.835 63.158 0.84 0.00 0.00 2.97
720 732 2.834618 GCGGCGGGCCTTCAAATAG 61.835 63.158 9.78 0.00 34.80 1.73
721 733 1.973816 TAGCGGCGGGCCTTCAAATA 61.974 55.000 9.78 0.00 45.17 1.40
722 734 2.624674 ATAGCGGCGGGCCTTCAAAT 62.625 55.000 9.78 0.00 45.17 2.32
723 735 2.830186 AATAGCGGCGGGCCTTCAAA 62.830 55.000 9.78 0.00 45.17 2.69
724 736 2.830186 AAATAGCGGCGGGCCTTCAA 62.830 55.000 9.78 0.00 45.17 2.69
725 737 2.830186 AAAATAGCGGCGGGCCTTCA 62.830 55.000 9.78 0.00 45.17 3.02
726 738 1.663379 AAAAATAGCGGCGGGCCTTC 61.663 55.000 9.78 0.00 45.17 3.46
727 739 1.663379 GAAAAATAGCGGCGGGCCTT 61.663 55.000 9.78 0.00 45.17 4.35
728 740 2.044352 AAAAATAGCGGCGGGCCT 60.044 55.556 9.78 0.00 45.17 5.19
729 741 1.734388 ATGAAAAATAGCGGCGGGCC 61.734 55.000 9.78 0.00 45.17 5.80
730 742 0.948678 TATGAAAAATAGCGGCGGGC 59.051 50.000 9.78 0.00 44.05 6.13
731 743 1.069227 GCTATGAAAAATAGCGGCGGG 60.069 52.381 9.78 0.00 37.79 6.13
732 744 1.069227 GGCTATGAAAAATAGCGGCGG 60.069 52.381 9.78 0.00 45.83 6.13
733 745 1.069227 GGGCTATGAAAAATAGCGGCG 60.069 52.381 0.51 0.51 45.83 6.46
734 746 1.069227 CGGGCTATGAAAAATAGCGGC 60.069 52.381 10.37 0.00 45.83 6.53
735 747 1.069227 GCGGGCTATGAAAAATAGCGG 60.069 52.381 10.37 6.88 45.83 5.52
736 748 1.873591 AGCGGGCTATGAAAAATAGCG 59.126 47.619 10.37 0.97 45.83 4.26
737 749 5.629079 AATAGCGGGCTATGAAAAATAGC 57.371 39.130 13.53 8.52 44.56 2.97
738 750 9.959749 TTTTAAATAGCGGGCTATGAAAAATAG 57.040 29.630 20.37 0.00 39.03 1.73
739 751 9.738832 GTTTTAAATAGCGGGCTATGAAAAATA 57.261 29.630 22.38 9.67 39.03 1.40
740 752 8.254508 TGTTTTAAATAGCGGGCTATGAAAAAT 58.745 29.630 22.38 5.40 39.03 1.82
741 753 7.603651 TGTTTTAAATAGCGGGCTATGAAAAA 58.396 30.769 22.38 20.82 39.03 1.94
742 754 7.159322 TGTTTTAAATAGCGGGCTATGAAAA 57.841 32.000 19.53 19.53 39.03 2.29
743 755 6.761099 TGTTTTAAATAGCGGGCTATGAAA 57.239 33.333 13.53 13.27 39.03 2.69
744 756 6.952773 ATGTTTTAAATAGCGGGCTATGAA 57.047 33.333 13.53 8.61 39.03 2.57
745 757 6.734137 CAATGTTTTAAATAGCGGGCTATGA 58.266 36.000 13.53 3.16 39.03 2.15
746 758 5.402270 GCAATGTTTTAAATAGCGGGCTATG 59.598 40.000 13.53 0.89 39.03 2.23
747 759 5.301805 AGCAATGTTTTAAATAGCGGGCTAT 59.698 36.000 7.36 7.36 40.63 2.97
748 760 4.642885 AGCAATGTTTTAAATAGCGGGCTA 59.357 37.500 2.42 2.42 0.00 3.93
749 761 3.447229 AGCAATGTTTTAAATAGCGGGCT 59.553 39.130 0.00 0.00 0.00 5.19
750 762 3.780902 AGCAATGTTTTAAATAGCGGGC 58.219 40.909 0.00 0.00 0.00 6.13
751 763 5.248870 AGAGCAATGTTTTAAATAGCGGG 57.751 39.130 0.00 0.00 0.00 6.13
769 781 5.743158 ATGACCGGCATTGGCTATAGAGC 62.743 52.174 0.00 0.00 40.36 4.09
770 782 1.344438 TGACCGGCATTGGCTATAGAG 59.656 52.381 0.00 0.00 40.87 2.43
771 783 1.419381 TGACCGGCATTGGCTATAGA 58.581 50.000 0.00 0.00 40.87 1.98
772 784 2.079158 CATGACCGGCATTGGCTATAG 58.921 52.381 0.00 0.00 40.87 1.31
773 785 1.419762 ACATGACCGGCATTGGCTATA 59.580 47.619 0.00 0.00 40.87 1.31
811 823 8.362639 CCTACCCATCCATTTCATTTTATTCAG 58.637 37.037 0.00 0.00 0.00 3.02
832 844 1.413077 AGCTTCTTCATACCGCCTACC 59.587 52.381 0.00 0.00 0.00 3.18
833 845 2.159085 ACAGCTTCTTCATACCGCCTAC 60.159 50.000 0.00 0.00 0.00 3.18
834 846 2.100916 GACAGCTTCTTCATACCGCCTA 59.899 50.000 0.00 0.00 0.00 3.93
835 847 0.905357 ACAGCTTCTTCATACCGCCT 59.095 50.000 0.00 0.00 0.00 5.52
836 848 1.134670 AGACAGCTTCTTCATACCGCC 60.135 52.381 0.00 0.00 0.00 6.13
837 849 2.301577 AGACAGCTTCTTCATACCGC 57.698 50.000 0.00 0.00 0.00 5.68
838 850 3.130516 TGGTAGACAGCTTCTTCATACCG 59.869 47.826 4.15 0.00 33.38 4.02
839 851 4.688021 CTGGTAGACAGCTTCTTCATACC 58.312 47.826 4.15 6.30 40.97 2.73
918 946 1.297664 CAGCTTCTGTATGGCTCTGC 58.702 55.000 0.00 0.00 33.74 4.26
919 947 1.134461 AGCAGCTTCTGTATGGCTCTG 60.134 52.381 0.00 0.00 33.74 3.35
921 949 1.138661 AGAGCAGCTTCTGTATGGCTC 59.861 52.381 9.70 9.70 46.01 4.70
922 950 1.134461 CAGAGCAGCTTCTGTATGGCT 60.134 52.381 7.18 0.00 39.76 4.75
923 951 1.297664 CAGAGCAGCTTCTGTATGGC 58.702 55.000 7.18 0.00 39.76 4.40
942 970 5.585844 GGGTAGTAGACTAAGACAGACAGAC 59.414 48.000 0.00 0.00 0.00 3.51
954 982 2.442502 GAGCAGGAGGGGTAGTAGACTA 59.557 54.545 0.00 0.00 0.00 2.59
956 984 1.694844 GAGCAGGAGGGGTAGTAGAC 58.305 60.000 0.00 0.00 0.00 2.59
963 991 2.835431 CGATCGAGCAGGAGGGGT 60.835 66.667 10.26 0.00 0.00 4.95
966 994 2.725008 GGTCGATCGAGCAGGAGG 59.275 66.667 35.27 0.00 41.72 4.30
969 997 2.024871 GTCGGTCGATCGAGCAGG 59.975 66.667 37.34 25.85 42.17 4.85
1083 1114 9.421399 CCCATTCCCTTTATGAATTAGTTAAGT 57.579 33.333 0.00 0.00 30.16 2.24
1084 1115 8.860088 CCCCATTCCCTTTATGAATTAGTTAAG 58.140 37.037 0.00 0.00 30.16 1.85
1085 1116 8.348354 ACCCCATTCCCTTTATGAATTAGTTAA 58.652 33.333 0.00 0.00 30.16 2.01
1619 1665 1.966451 CACTTCGCCAGGGTTGACC 60.966 63.158 0.00 0.00 40.67 4.02
2072 2133 3.655031 TTCGGCGTGCGCACAATT 61.655 55.556 37.03 0.00 44.11 2.32
2243 2307 2.915659 TCCTCCACCGCGTTCTGT 60.916 61.111 4.92 0.00 0.00 3.41
2276 2349 0.103026 CGTTGATCATCCTCTCGCCA 59.897 55.000 0.00 0.00 0.00 5.69
2552 2625 2.736192 GGTGCCAAATGGATCGTTTTTG 59.264 45.455 2.98 6.65 37.39 2.44
2697 2780 7.579761 TGCAATGCAAGGATACAACATATAA 57.420 32.000 5.01 0.00 34.76 0.98
2798 2881 7.385478 TCTTTATTTAATTGAAACAAACGGGCC 59.615 33.333 0.00 0.00 0.00 5.80
2800 2883 8.432359 GCTCTTTATTTAATTGAAACAAACGGG 58.568 33.333 0.00 0.00 0.00 5.28
2801 2884 8.973378 TGCTCTTTATTTAATTGAAACAAACGG 58.027 29.630 0.00 0.00 0.00 4.44
2848 2931 3.446310 TGTGTGAGAAGCGTCAAAGTA 57.554 42.857 1.61 0.00 0.00 2.24
2887 2970 5.104374 CGCGACTTTAAGGTCCAGTTTATA 58.896 41.667 11.72 0.00 33.07 0.98
2888 2971 3.930848 CGCGACTTTAAGGTCCAGTTTAT 59.069 43.478 11.72 0.00 33.07 1.40
2895 2978 3.078560 CGCGCGACTTTAAGGTCC 58.921 61.111 28.94 4.54 33.07 4.46
2998 3083 5.705905 GTCTCTACAAACACCAAGCCTTAAT 59.294 40.000 0.00 0.00 0.00 1.40
2999 3084 5.061179 GTCTCTACAAACACCAAGCCTTAA 58.939 41.667 0.00 0.00 0.00 1.85
3000 3085 4.101898 TGTCTCTACAAACACCAAGCCTTA 59.898 41.667 0.00 0.00 30.91 2.69
3001 3086 3.118038 TGTCTCTACAAACACCAAGCCTT 60.118 43.478 0.00 0.00 30.91 4.35
3002 3087 2.438021 TGTCTCTACAAACACCAAGCCT 59.562 45.455 0.00 0.00 30.91 4.58
3003 3088 2.846193 TGTCTCTACAAACACCAAGCC 58.154 47.619 0.00 0.00 30.91 4.35
3048 3133 7.175797 AGACATGATGATATTTCTGATGCCAT 58.824 34.615 0.00 0.00 0.00 4.40
3050 3135 8.557592 TTAGACATGATGATATTTCTGATGCC 57.442 34.615 0.00 0.00 0.00 4.40
3051 3136 9.989869 CATTAGACATGATGATATTTCTGATGC 57.010 33.333 0.00 0.00 29.80 3.91
3052 3137 9.989869 GCATTAGACATGATGATATTTCTGATG 57.010 33.333 0.00 5.07 35.57 3.07
3053 3138 9.734984 TGCATTAGACATGATGATATTTCTGAT 57.265 29.630 0.00 0.00 0.00 2.90
3057 3142 9.622004 CCTTTGCATTAGACATGATGATATTTC 57.378 33.333 0.00 0.00 0.00 2.17
3059 3144 7.177921 CCCCTTTGCATTAGACATGATGATATT 59.822 37.037 0.00 0.00 0.00 1.28
3061 3146 6.005823 CCCCTTTGCATTAGACATGATGATA 58.994 40.000 0.00 0.00 0.00 2.15
3062 3147 4.831155 CCCCTTTGCATTAGACATGATGAT 59.169 41.667 0.00 0.00 0.00 2.45
3066 3151 2.311542 ACCCCCTTTGCATTAGACATGA 59.688 45.455 0.00 0.00 0.00 3.07
3067 3152 2.428171 CACCCCCTTTGCATTAGACATG 59.572 50.000 0.00 0.00 0.00 3.21
3068 3153 2.042979 ACACCCCCTTTGCATTAGACAT 59.957 45.455 0.00 0.00 0.00 3.06
3069 3154 1.427368 ACACCCCCTTTGCATTAGACA 59.573 47.619 0.00 0.00 0.00 3.41
3071 3156 1.707989 TGACACCCCCTTTGCATTAGA 59.292 47.619 0.00 0.00 0.00 2.10
3072 3157 2.094675 CTGACACCCCCTTTGCATTAG 58.905 52.381 0.00 0.00 0.00 1.73
3073 3158 1.427368 ACTGACACCCCCTTTGCATTA 59.573 47.619 0.00 0.00 0.00 1.90
3074 3159 0.188342 ACTGACACCCCCTTTGCATT 59.812 50.000 0.00 0.00 0.00 3.56
3077 3162 0.251341 ATGACTGACACCCCCTTTGC 60.251 55.000 0.00 0.00 0.00 3.68
3078 3163 3.652057 ATATGACTGACACCCCCTTTG 57.348 47.619 0.00 0.00 0.00 2.77
3079 3164 5.994416 ATAATATGACTGACACCCCCTTT 57.006 39.130 0.00 0.00 0.00 3.11
3081 3166 7.648177 ATTAATAATATGACTGACACCCCCT 57.352 36.000 0.00 0.00 0.00 4.79
3126 3211 9.207868 CCCCCTTTCCATTAGTTTTAATTCATA 57.792 33.333 0.00 0.00 0.00 2.15
3127 3212 7.682459 ACCCCCTTTCCATTAGTTTTAATTCAT 59.318 33.333 0.00 0.00 0.00 2.57
3128 3213 7.020009 ACCCCCTTTCCATTAGTTTTAATTCA 58.980 34.615 0.00 0.00 0.00 2.57
3132 3217 5.718039 ACACCCCCTTTCCATTAGTTTTAA 58.282 37.500 0.00 0.00 0.00 1.52
3135 3220 3.141272 TGACACCCCCTTTCCATTAGTTT 59.859 43.478 0.00 0.00 0.00 2.66
3137 3222 2.308866 CTGACACCCCCTTTCCATTAGT 59.691 50.000 0.00 0.00 0.00 2.24
3138 3223 2.308866 ACTGACACCCCCTTTCCATTAG 59.691 50.000 0.00 0.00 0.00 1.73
3140 3225 1.075536 GACTGACACCCCCTTTCCATT 59.924 52.381 0.00 0.00 0.00 3.16
3141 3226 0.698818 GACTGACACCCCCTTTCCAT 59.301 55.000 0.00 0.00 0.00 3.41
3143 3228 0.698818 ATGACTGACACCCCCTTTCC 59.301 55.000 0.00 0.00 0.00 3.13
3144 3229 2.437413 GAATGACTGACACCCCCTTTC 58.563 52.381 0.00 0.00 0.00 2.62
3145 3230 1.075536 GGAATGACTGACACCCCCTTT 59.924 52.381 0.00 0.00 0.00 3.11
3146 3231 0.698818 GGAATGACTGACACCCCCTT 59.301 55.000 0.00 0.00 0.00 3.95
3147 3232 0.475632 TGGAATGACTGACACCCCCT 60.476 55.000 0.00 0.00 0.00 4.79
3148 3233 0.035056 CTGGAATGACTGACACCCCC 60.035 60.000 0.00 0.00 0.00 5.40
3149 3234 0.693049 ACTGGAATGACTGACACCCC 59.307 55.000 0.00 0.00 0.00 4.95
3150 3235 3.600388 CTTACTGGAATGACTGACACCC 58.400 50.000 0.00 0.00 0.00 4.61
3151 3236 3.003480 GCTTACTGGAATGACTGACACC 58.997 50.000 0.00 0.00 0.00 4.16
3152 3237 3.003480 GGCTTACTGGAATGACTGACAC 58.997 50.000 0.00 0.00 0.00 3.67
3153 3238 2.027192 GGGCTTACTGGAATGACTGACA 60.027 50.000 0.00 0.00 0.00 3.58
3154 3239 2.633488 GGGCTTACTGGAATGACTGAC 58.367 52.381 0.00 0.00 0.00 3.51
3155 3240 1.207089 CGGGCTTACTGGAATGACTGA 59.793 52.381 0.00 0.00 0.00 3.41
3156 3241 1.656652 CGGGCTTACTGGAATGACTG 58.343 55.000 0.00 0.00 0.00 3.51
3157 3242 0.107654 GCGGGCTTACTGGAATGACT 60.108 55.000 0.00 0.00 0.00 3.41
3158 3243 0.392461 TGCGGGCTTACTGGAATGAC 60.392 55.000 0.00 0.00 0.00 3.06
3159 3244 0.326595 TTGCGGGCTTACTGGAATGA 59.673 50.000 0.00 0.00 30.06 2.57
3160 3245 0.451783 GTTGCGGGCTTACTGGAATG 59.548 55.000 0.00 0.00 38.12 2.67
3161 3246 0.328258 AGTTGCGGGCTTACTGGAAT 59.672 50.000 0.00 0.00 38.12 3.01
3162 3247 0.978151 TAGTTGCGGGCTTACTGGAA 59.022 50.000 8.56 0.00 32.92 3.53
3163 3248 1.200519 ATAGTTGCGGGCTTACTGGA 58.799 50.000 8.56 0.00 0.00 3.86
3164 3249 2.038387 AATAGTTGCGGGCTTACTGG 57.962 50.000 8.56 0.00 0.00 4.00
3165 3250 3.793559 AGTAATAGTTGCGGGCTTACTG 58.206 45.455 8.56 0.00 32.82 2.74
3166 3251 5.603170 TTAGTAATAGTTGCGGGCTTACT 57.397 39.130 7.23 7.23 36.75 2.24
3353 3446 7.165485 ACTCAACTATTATTGTGTTGTAGCCA 58.835 34.615 0.00 0.00 41.05 4.75
3390 3483 8.565896 TCTTATTTCTTGCTAACATGTGTGAT 57.434 30.769 0.00 0.00 0.00 3.06
3391 3484 7.977789 TCTTATTTCTTGCTAACATGTGTGA 57.022 32.000 0.00 0.00 0.00 3.58
3426 3519 5.509498 AGCTAGCCATGTTCTCCAAATAAA 58.491 37.500 12.13 0.00 0.00 1.40
3459 3552 7.959658 ATCAATGGTTCAGAAATGTATTCCA 57.040 32.000 0.00 0.00 0.00 3.53
3594 3737 5.009410 CACAAAGGCTCTTGTCATCTTTCTT 59.991 40.000 10.70 0.00 37.43 2.52
3602 3745 1.610038 CATGCACAAAGGCTCTTGTCA 59.390 47.619 10.70 11.56 37.43 3.58
3604 3747 1.985473 TCATGCACAAAGGCTCTTGT 58.015 45.000 8.59 8.59 40.17 3.16
3615 3758 9.558396 TCTAATGTTGTGATTATATCATGCACA 57.442 29.630 0.00 0.00 42.04 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.