Multiple sequence alignment - TraesCS5D01G016000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G016000 chr5D 100.000 5447 0 0 1 5447 9126527 9121081 0.000000e+00 10059.0
1 TraesCS5D01G016000 chr5D 96.997 333 7 2 982 1313 533372249 533371919 1.710000e-154 556.0
2 TraesCS5D01G016000 chr5D 96.697 333 8 2 982 1313 23229817 23230147 7.970000e-153 551.0
3 TraesCS5D01G016000 chr5D 96.364 110 4 0 1475 1584 533371906 533371797 1.210000e-41 182.0
4 TraesCS5D01G016000 chr5D 95.455 110 5 0 1475 1584 23230160 23230269 5.610000e-40 176.0
5 TraesCS5D01G016000 chr5D 97.561 41 1 0 3325 3365 321587337 321587377 2.720000e-08 71.3
6 TraesCS5D01G016000 chr5A 92.518 2125 96 30 3366 5447 7363956 7361852 0.000000e+00 2985.0
7 TraesCS5D01G016000 chr5A 90.789 1292 85 20 1264 2531 7365912 7364631 0.000000e+00 1696.0
8 TraesCS5D01G016000 chr5A 90.793 706 35 9 2631 3326 7364626 7363941 0.000000e+00 917.0
9 TraesCS5D01G016000 chr5A 85.908 738 44 21 549 1229 7366789 7366055 0.000000e+00 732.0
10 TraesCS5D01G016000 chr5A 83.128 243 18 7 101 340 7393230 7393008 3.330000e-47 200.0
11 TraesCS5D01G016000 chr5A 94.030 67 4 0 425 491 7392919 7392853 9.650000e-18 102.0
12 TraesCS5D01G016000 chr5B 90.307 2053 117 51 558 2539 9267677 9265636 0.000000e+00 2614.0
13 TraesCS5D01G016000 chr5B 89.166 1643 84 29 3366 4963 9264952 9263359 0.000000e+00 1962.0
14 TraesCS5D01G016000 chr5B 95.035 705 22 7 2630 3324 9265640 9264939 0.000000e+00 1096.0
15 TraesCS5D01G016000 chr5B 86.938 467 30 13 4993 5447 9263363 9262916 3.790000e-136 496.0
16 TraesCS5D01G016000 chr5B 85.063 395 35 8 101 489 9271846 9271470 1.110000e-101 381.0
17 TraesCS5D01G016000 chr5B 90.083 121 10 2 2532 2651 370044293 370044174 7.310000e-34 156.0
18 TraesCS5D01G016000 chr5B 96.970 33 1 0 74 106 531596529 531596497 7.620000e-04 56.5
19 TraesCS5D01G016000 chr3D 95.737 563 18 3 1356 1912 270304357 270303795 0.000000e+00 902.0
20 TraesCS5D01G016000 chr3D 95.073 548 22 3 3560 4106 270303723 270303180 0.000000e+00 857.0
21 TraesCS5D01G016000 chr3D 96.471 340 9 2 1356 1694 583653390 583653727 4.770000e-155 558.0
22 TraesCS5D01G016000 chr3D 96.997 333 7 2 982 1313 11016011 11015681 1.710000e-154 556.0
23 TraesCS5D01G016000 chr3D 96.997 333 7 2 982 1313 21932089 21932419 1.710000e-154 556.0
24 TraesCS5D01G016000 chr3D 96.396 333 9 2 982 1313 576282037 576282367 3.710000e-151 545.0
25 TraesCS5D01G016000 chr3D 96.364 110 4 0 1475 1584 11015668 11015559 1.210000e-41 182.0
26 TraesCS5D01G016000 chr3D 96.364 110 4 0 1475 1584 21932432 21932541 1.210000e-41 182.0
27 TraesCS5D01G016000 chr3D 95.455 110 5 0 1475 1584 576282380 576282489 5.610000e-40 176.0
28 TraesCS5D01G016000 chr3D 93.333 105 7 0 2536 2640 292887841 292887737 7.310000e-34 156.0
29 TraesCS5D01G016000 chr3D 83.486 109 15 2 1 106 433618772 433618880 1.250000e-16 99.0
30 TraesCS5D01G016000 chr3D 100.000 43 0 0 3516 3558 270303794 270303752 4.520000e-11 80.5
31 TraesCS5D01G016000 chr3D 80.952 105 16 4 1 101 585684617 585684721 4.520000e-11 80.5
32 TraesCS5D01G016000 chr3D 97.561 41 0 1 3327 3367 557631826 557631787 9.790000e-08 69.4
33 TraesCS5D01G016000 chr4D 96.096 333 10 2 982 1313 247758641 247758311 1.730000e-149 540.0
34 TraesCS5D01G016000 chr4D 93.531 371 10 3 955 1313 288956887 288956519 1.730000e-149 540.0
35 TraesCS5D01G016000 chr4D 92.992 371 12 3 955 1313 168757622 168757990 3.740000e-146 529.0
36 TraesCS5D01G016000 chr4D 96.154 104 4 0 2529 2632 13198385 13198282 2.610000e-38 171.0
37 TraesCS5D01G016000 chr4D 96.154 104 3 1 2534 2636 498045972 498045869 9.380000e-38 169.0
38 TraesCS5D01G016000 chr4D 93.519 108 7 0 2536 2643 490940140 490940033 1.570000e-35 161.0
39 TraesCS5D01G016000 chr4D 86.111 108 11 4 1 105 150979235 150979341 4.460000e-21 113.0
40 TraesCS5D01G016000 chr2D 96.096 333 10 2 982 1313 40486754 40487084 1.730000e-149 540.0
41 TraesCS5D01G016000 chr2D 94.444 108 5 1 2532 2638 382198254 382198147 1.210000e-36 165.0
42 TraesCS5D01G016000 chr2D 97.778 45 1 0 3325 3369 114820711 114820667 1.630000e-10 78.7
43 TraesCS5D01G016000 chr2D 100.000 29 0 0 955 983 40486716 40486744 3.000000e-03 54.7
44 TraesCS5D01G016000 chr2A 95.192 104 4 1 2536 2639 68155824 68155926 4.370000e-36 163.0
45 TraesCS5D01G016000 chr7B 91.379 116 9 1 2536 2650 562993066 562993181 2.030000e-34 158.0
46 TraesCS5D01G016000 chr4B 91.892 111 9 0 2523 2633 538218859 538218749 7.310000e-34 156.0
47 TraesCS5D01G016000 chr2B 82.456 114 14 5 1 108 763860988 763861101 1.620000e-15 95.3
48 TraesCS5D01G016000 chr3B 81.818 110 14 3 3 106 133830269 133830378 2.700000e-13 87.9
49 TraesCS5D01G016000 chr3B 81.250 96 13 4 11 101 254195375 254195470 7.570000e-09 73.1
50 TraesCS5D01G016000 chr7D 100.000 39 0 0 3325 3363 52377992 52378030 7.570000e-09 73.1
51 TraesCS5D01G016000 chr7A 100.000 39 0 0 3325 3363 618238875 618238913 7.570000e-09 73.1
52 TraesCS5D01G016000 chrUn 100.000 38 0 0 3325 3362 49408980 49409017 2.720000e-08 71.3
53 TraesCS5D01G016000 chr6D 97.561 41 1 0 3325 3365 2829906 2829946 2.720000e-08 71.3
54 TraesCS5D01G016000 chr6D 95.455 44 2 0 3325 3368 91823292 91823249 2.720000e-08 71.3
55 TraesCS5D01G016000 chr1B 97.561 41 0 1 3325 3365 458013887 458013926 9.790000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G016000 chr5D 9121081 9126527 5446 True 10059.000000 10059 100.000000 1 5447 1 chr5D.!!$R1 5446
1 TraesCS5D01G016000 chr5A 7361852 7366789 4937 True 1582.500000 2985 90.002000 549 5447 4 chr5A.!!$R1 4898
2 TraesCS5D01G016000 chr5B 9262916 9271846 8930 True 1309.800000 2614 89.301800 101 5447 5 chr5B.!!$R3 5346
3 TraesCS5D01G016000 chr3D 270303180 270304357 1177 True 613.166667 902 96.936667 1356 4106 3 chr3D.!!$R4 2750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.032403 TCCGCGAACGAAGGAAAGAA 59.968 50.0 8.23 0.0 43.93 2.52 F
535 541 0.306533 TTCAAAGCAACCGACGAAGC 59.693 50.0 0.00 0.0 0.00 3.86 F
1891 5815 0.391130 TTGCTCGTGGTACAGATGGC 60.391 55.0 0.00 0.0 41.80 4.40 F
2551 6492 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.0 0.00 0.0 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1290 5194 0.250295 AGTTTGCTAGCGCCAAGACA 60.250 50.0 10.77 2.12 34.43 3.41 R
2533 6474 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.0 0.00 0.00 0.00 2.90 R
3823 7802 1.841302 TTCTTGATGGTCAGGGCGCT 61.841 55.0 7.64 0.00 0.00 5.92 R
4454 8435 0.812811 CATGCTCCTGTCCACATCGG 60.813 60.0 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.813596 GCGGCTACAGTTGGATGG 58.186 61.111 0.00 0.00 0.00 3.51
18 19 2.472909 GCGGCTACAGTTGGATGGC 61.473 63.158 0.00 0.00 0.00 4.40
19 20 2.173669 CGGCTACAGTTGGATGGCG 61.174 63.158 0.00 0.00 39.98 5.69
20 21 1.078426 GGCTACAGTTGGATGGCGT 60.078 57.895 0.00 0.00 0.00 5.68
21 22 1.090052 GGCTACAGTTGGATGGCGTC 61.090 60.000 0.00 0.00 0.00 5.19
35 36 2.278206 CGTCCTCTCGCATCCGTG 60.278 66.667 0.00 0.00 35.54 4.94
36 37 2.885861 GTCCTCTCGCATCCGTGT 59.114 61.111 0.00 0.00 35.54 4.49
37 38 1.226717 GTCCTCTCGCATCCGTGTC 60.227 63.158 0.00 0.00 35.54 3.67
38 39 2.105128 CCTCTCGCATCCGTGTCC 59.895 66.667 0.00 0.00 35.54 4.02
39 40 2.710902 CCTCTCGCATCCGTGTCCA 61.711 63.158 0.00 0.00 35.54 4.02
40 41 1.517257 CTCTCGCATCCGTGTCCAC 60.517 63.158 0.00 0.00 35.54 4.02
50 51 2.342648 GTGTCCACGGACTGACCC 59.657 66.667 16.88 0.00 44.80 4.46
51 52 2.920912 TGTCCACGGACTGACCCC 60.921 66.667 16.88 0.00 44.80 4.95
52 53 3.703127 GTCCACGGACTGACCCCC 61.703 72.222 9.04 0.00 41.57 5.40
67 68 4.367023 CCCCTGTCCGCGAACGAA 62.367 66.667 8.23 0.00 43.93 3.85
68 69 2.809601 CCCTGTCCGCGAACGAAG 60.810 66.667 8.23 0.00 43.93 3.79
69 70 2.809601 CCTGTCCGCGAACGAAGG 60.810 66.667 8.23 0.00 43.93 3.46
70 71 2.257371 CTGTCCGCGAACGAAGGA 59.743 61.111 8.23 3.25 43.93 3.36
71 72 1.372499 CTGTCCGCGAACGAAGGAA 60.372 57.895 8.23 0.00 43.93 3.36
72 73 0.942410 CTGTCCGCGAACGAAGGAAA 60.942 55.000 8.23 7.38 43.93 3.13
73 74 0.942410 TGTCCGCGAACGAAGGAAAG 60.942 55.000 8.23 0.00 43.93 2.62
74 75 0.665369 GTCCGCGAACGAAGGAAAGA 60.665 55.000 8.23 0.00 43.93 2.52
75 76 0.032403 TCCGCGAACGAAGGAAAGAA 59.968 50.000 8.23 0.00 43.93 2.52
76 77 0.863144 CCGCGAACGAAGGAAAGAAA 59.137 50.000 8.23 0.00 43.93 2.52
77 78 1.463444 CCGCGAACGAAGGAAAGAAAT 59.537 47.619 8.23 0.00 43.93 2.17
78 79 2.095919 CCGCGAACGAAGGAAAGAAATT 60.096 45.455 8.23 0.00 43.93 1.82
79 80 3.551551 CGCGAACGAAGGAAAGAAATTT 58.448 40.909 0.00 0.00 43.93 1.82
80 81 3.357823 CGCGAACGAAGGAAAGAAATTTG 59.642 43.478 0.00 0.00 43.93 2.32
81 82 3.119628 GCGAACGAAGGAAAGAAATTTGC 59.880 43.478 0.00 0.00 0.00 3.68
82 83 3.357823 CGAACGAAGGAAAGAAATTTGCG 59.642 43.478 0.00 0.00 0.00 4.85
83 84 3.282831 ACGAAGGAAAGAAATTTGCGG 57.717 42.857 0.00 0.00 0.00 5.69
84 85 2.030274 ACGAAGGAAAGAAATTTGCGGG 60.030 45.455 0.00 0.00 0.00 6.13
85 86 2.030274 CGAAGGAAAGAAATTTGCGGGT 60.030 45.455 0.00 0.00 0.00 5.28
86 87 3.552068 CGAAGGAAAGAAATTTGCGGGTT 60.552 43.478 0.00 0.00 0.00 4.11
87 88 4.320641 CGAAGGAAAGAAATTTGCGGGTTA 60.321 41.667 0.00 0.00 0.00 2.85
88 89 4.514781 AGGAAAGAAATTTGCGGGTTAC 57.485 40.909 0.00 0.00 0.00 2.50
89 90 3.257375 AGGAAAGAAATTTGCGGGTTACC 59.743 43.478 0.00 0.00 0.00 2.85
107 108 1.207329 ACCGTTGGAGATGCTCTTACC 59.793 52.381 0.00 0.00 0.00 2.85
125 126 8.082242 GCTCTTACCATTACACTTTCAATGTTT 58.918 33.333 0.00 0.00 31.52 2.83
148 149 6.900568 TTTTCACGCATTTGTCAAAATCTT 57.099 29.167 1.31 0.00 33.59 2.40
151 152 6.552859 TCACGCATTTGTCAAAATCTTAGA 57.447 33.333 1.31 0.00 33.59 2.10
153 154 6.017523 TCACGCATTTGTCAAAATCTTAGACA 60.018 34.615 1.31 0.00 40.24 3.41
156 157 7.094634 ACGCATTTGTCAAAATCTTAGACATCT 60.095 33.333 1.31 0.00 41.42 2.90
157 158 7.217636 CGCATTTGTCAAAATCTTAGACATCTG 59.782 37.037 1.31 0.00 41.42 2.90
175 176 9.646427 AGACATCTGTTAGAAGATACTTTGTTC 57.354 33.333 0.00 0.00 35.09 3.18
176 177 9.646427 GACATCTGTTAGAAGATACTTTGTTCT 57.354 33.333 0.00 0.00 35.09 3.01
195 196 7.984422 TGTTCTTATCCCTTGTGCATATATG 57.016 36.000 8.45 8.45 0.00 1.78
202 203 5.940617 TCCCTTGTGCATATATGTAAGCTT 58.059 37.500 14.14 3.48 0.00 3.74
209 210 8.593492 TGTGCATATATGTAAGCTTACAGAAG 57.407 34.615 35.23 26.39 45.80 2.85
213 214 8.713271 GCATATATGTAAGCTTACAGAAGAACC 58.287 37.037 35.23 20.53 45.80 3.62
251 252 3.550437 AGCAGAAGCATACGGAATCTT 57.450 42.857 0.00 0.00 45.49 2.40
253 254 3.873952 AGCAGAAGCATACGGAATCTTTC 59.126 43.478 0.00 0.00 45.49 2.62
254 255 3.623060 GCAGAAGCATACGGAATCTTTCA 59.377 43.478 0.00 0.00 41.58 2.69
269 270 7.031975 GGAATCTTTCATGGAAAGCAAAGTAG 58.968 38.462 12.63 0.00 45.86 2.57
316 319 5.201713 AGGTCACGATCATATGGTTGTAG 57.798 43.478 8.60 4.39 0.00 2.74
332 335 1.618837 TGTAGTGCCTCGCTTTCTTCT 59.381 47.619 0.00 0.00 0.00 2.85
334 337 0.681733 AGTGCCTCGCTTTCTTCTCA 59.318 50.000 0.00 0.00 0.00 3.27
354 357 9.761504 CTTCTCATTCATCAGTTACATCTGTAT 57.238 33.333 0.00 0.00 36.85 2.29
365 368 7.023575 CAGTTACATCTGTATTTGAGCAAACC 58.976 38.462 0.00 0.00 32.51 3.27
372 375 5.353123 TCTGTATTTGAGCAAACCGTATTCC 59.647 40.000 0.00 0.00 32.51 3.01
384 387 6.033091 GCAAACCGTATTCCGTTCTTATTTTG 59.967 38.462 0.00 0.00 33.66 2.44
385 388 5.806366 ACCGTATTCCGTTCTTATTTTGG 57.194 39.130 0.00 0.00 33.66 3.28
386 389 4.637091 ACCGTATTCCGTTCTTATTTTGGG 59.363 41.667 0.00 0.00 33.66 4.12
387 390 4.035909 CCGTATTCCGTTCTTATTTTGGGG 59.964 45.833 0.00 0.00 33.66 4.96
388 391 4.035909 CGTATTCCGTTCTTATTTTGGGGG 59.964 45.833 0.00 0.00 0.00 5.40
417 420 1.434555 GGGGGCGCAAATAACAAAAC 58.565 50.000 10.83 0.00 0.00 2.43
421 427 2.912345 GGGCGCAAATAACAAAACTACG 59.088 45.455 10.83 0.00 0.00 3.51
424 430 4.377635 GGCGCAAATAACAAAACTACGAGA 60.378 41.667 10.83 0.00 0.00 4.04
433 439 6.671614 AACAAAACTACGAGATGACAACAA 57.328 33.333 0.00 0.00 0.00 2.83
444 450 1.327303 TGACAACAAGGCATTGGACC 58.673 50.000 16.45 2.39 40.97 4.46
455 461 4.019174 AGGCATTGGACCATCTTACAAAG 58.981 43.478 0.00 0.00 0.00 2.77
460 466 6.037610 GCATTGGACCATCTTACAAAGTCTAG 59.962 42.308 0.00 0.00 0.00 2.43
477 483 4.082463 AGTCTAGAGAAGCAGCTGTTGTAC 60.082 45.833 16.64 5.15 0.00 2.90
481 487 3.812053 AGAGAAGCAGCTGTTGTACAAAG 59.188 43.478 16.64 10.99 0.00 2.77
489 495 2.798283 GCTGTTGTACAAAGTCGTAGCA 59.202 45.455 10.51 0.48 0.00 3.49
490 496 3.246699 GCTGTTGTACAAAGTCGTAGCAA 59.753 43.478 10.51 0.00 0.00 3.91
491 497 4.260456 GCTGTTGTACAAAGTCGTAGCAAA 60.260 41.667 10.51 0.00 0.00 3.68
492 498 5.728344 GCTGTTGTACAAAGTCGTAGCAAAA 60.728 40.000 10.51 0.00 0.00 2.44
493 499 5.802064 TGTTGTACAAAGTCGTAGCAAAAG 58.198 37.500 10.51 0.00 0.00 2.27
494 500 4.461992 TGTACAAAGTCGTAGCAAAAGC 57.538 40.909 0.00 0.00 0.00 3.51
496 502 3.879932 ACAAAGTCGTAGCAAAAGCTC 57.120 42.857 0.00 0.00 0.00 4.09
497 503 3.202906 ACAAAGTCGTAGCAAAAGCTCA 58.797 40.909 0.00 0.00 0.00 4.26
498 504 3.248602 ACAAAGTCGTAGCAAAAGCTCAG 59.751 43.478 0.00 0.00 0.00 3.35
499 505 3.386768 AAGTCGTAGCAAAAGCTCAGA 57.613 42.857 0.00 0.00 0.00 3.27
500 506 3.386768 AGTCGTAGCAAAAGCTCAGAA 57.613 42.857 0.00 0.00 0.00 3.02
501 507 3.728845 AGTCGTAGCAAAAGCTCAGAAA 58.271 40.909 0.00 0.00 0.00 2.52
502 508 4.127171 AGTCGTAGCAAAAGCTCAGAAAA 58.873 39.130 0.00 0.00 0.00 2.29
503 509 4.574828 AGTCGTAGCAAAAGCTCAGAAAAA 59.425 37.500 0.00 0.00 0.00 1.94
504 510 4.906437 GTCGTAGCAAAAGCTCAGAAAAAG 59.094 41.667 0.00 0.00 0.00 2.27
505 511 4.574828 TCGTAGCAAAAGCTCAGAAAAAGT 59.425 37.500 0.00 0.00 0.00 2.66
508 514 6.357240 CGTAGCAAAAGCTCAGAAAAAGTAAC 59.643 38.462 0.00 0.00 0.00 2.50
509 515 6.456795 AGCAAAAGCTCAGAAAAAGTAACT 57.543 33.333 0.00 0.00 0.00 2.24
510 516 6.499172 AGCAAAAGCTCAGAAAAAGTAACTC 58.501 36.000 0.00 0.00 0.00 3.01
511 517 6.319911 AGCAAAAGCTCAGAAAAAGTAACTCT 59.680 34.615 0.00 0.00 0.00 3.24
512 518 6.634837 GCAAAAGCTCAGAAAAAGTAACTCTC 59.365 38.462 0.00 0.00 0.00 3.20
513 519 7.679638 GCAAAAGCTCAGAAAAAGTAACTCTCA 60.680 37.037 0.00 0.00 0.00 3.27
514 520 6.852858 AAGCTCAGAAAAAGTAACTCTCAC 57.147 37.500 0.00 0.00 0.00 3.51
516 522 6.587273 AGCTCAGAAAAAGTAACTCTCACTT 58.413 36.000 0.00 0.00 37.85 3.16
517 523 7.051000 AGCTCAGAAAAAGTAACTCTCACTTT 58.949 34.615 0.00 0.00 45.73 2.66
519 525 7.011482 GCTCAGAAAAAGTAACTCTCACTTTCA 59.989 37.037 1.31 0.00 43.62 2.69
520 526 8.786826 TCAGAAAAAGTAACTCTCACTTTCAA 57.213 30.769 1.31 0.00 43.62 2.69
521 527 9.226606 TCAGAAAAAGTAACTCTCACTTTCAAA 57.773 29.630 1.31 0.00 43.62 2.69
522 528 9.495754 CAGAAAAAGTAACTCTCACTTTCAAAG 57.504 33.333 0.00 0.00 43.62 2.77
523 529 8.184848 AGAAAAAGTAACTCTCACTTTCAAAGC 58.815 33.333 0.00 0.00 43.62 3.51
524 530 7.391148 AAAAGTAACTCTCACTTTCAAAGCA 57.609 32.000 0.00 0.00 43.62 3.91
525 531 7.391148 AAAGTAACTCTCACTTTCAAAGCAA 57.609 32.000 0.00 0.00 41.26 3.91
527 533 4.639135 AACTCTCACTTTCAAAGCAACC 57.361 40.909 0.00 0.00 0.00 3.77
528 534 2.614057 ACTCTCACTTTCAAAGCAACCG 59.386 45.455 0.00 0.00 0.00 4.44
529 535 2.872245 CTCTCACTTTCAAAGCAACCGA 59.128 45.455 0.00 0.00 0.00 4.69
530 536 2.612212 TCTCACTTTCAAAGCAACCGAC 59.388 45.455 0.00 0.00 0.00 4.79
531 537 1.329292 TCACTTTCAAAGCAACCGACG 59.671 47.619 0.00 0.00 0.00 5.12
533 539 2.011222 ACTTTCAAAGCAACCGACGAA 58.989 42.857 0.00 0.00 0.00 3.85
534 540 2.031683 ACTTTCAAAGCAACCGACGAAG 59.968 45.455 0.00 0.00 0.00 3.79
535 541 0.306533 TTCAAAGCAACCGACGAAGC 59.693 50.000 0.00 0.00 0.00 3.86
537 543 3.236618 AAAGCAACCGACGAAGCGC 62.237 57.895 0.00 0.00 0.00 5.92
540 546 4.117372 CAACCGACGAAGCGCGAC 62.117 66.667 12.10 0.04 44.57 5.19
566 4296 4.599047 CCTGCTGCTAGTAACTACTAACG 58.401 47.826 0.00 0.00 38.24 3.18
601 4331 8.244113 GGATTCTCGAATAAAGTGGACATTTTT 58.756 33.333 0.00 0.00 0.00 1.94
603 4333 7.979444 TCTCGAATAAAGTGGACATTTTTCT 57.021 32.000 0.00 0.00 0.00 2.52
664 4415 8.575649 AAGGGAGAATACGTATTTGAATTTGT 57.424 30.769 21.18 0.00 0.00 2.83
680 4431 8.702408 TTGAATTTGTGTTCGTATTCGTTTAG 57.298 30.769 0.00 0.00 38.33 1.85
687 4438 6.745907 TGTGTTCGTATTCGTTTAGAGAGATG 59.254 38.462 0.00 0.00 38.33 2.90
733 4487 8.744652 TGTATTCGAACCATTTTTACATCCAAT 58.255 29.630 0.00 0.00 0.00 3.16
817 4574 2.887568 CCACCACGCGCAGATCTC 60.888 66.667 5.73 0.00 0.00 2.75
865 4626 2.352032 CGAACTCCTCTTCCCCGCT 61.352 63.158 0.00 0.00 0.00 5.52
1062 4852 2.401766 GCACCGGTGGAAGATGCTG 61.402 63.158 34.58 6.87 33.44 4.41
1229 5019 4.835284 AACCACCACCAGATTTGTTTTT 57.165 36.364 0.00 0.00 0.00 1.94
1230 5020 4.400529 ACCACCACCAGATTTGTTTTTC 57.599 40.909 0.00 0.00 0.00 2.29
1231 5021 4.030216 ACCACCACCAGATTTGTTTTTCT 58.970 39.130 0.00 0.00 0.00 2.52
1233 5023 4.810491 CCACCACCAGATTTGTTTTTCTTG 59.190 41.667 0.00 0.00 0.00 3.02
1247 5151 8.864069 TTGTTTTTCTTGTGTATGTATTGGTG 57.136 30.769 0.00 0.00 0.00 4.17
1248 5152 7.429633 TGTTTTTCTTGTGTATGTATTGGTGG 58.570 34.615 0.00 0.00 0.00 4.61
1249 5153 6.582677 TTTTCTTGTGTATGTATTGGTGGG 57.417 37.500 0.00 0.00 0.00 4.61
1251 5155 4.584874 TCTTGTGTATGTATTGGTGGGTG 58.415 43.478 0.00 0.00 0.00 4.61
1252 5156 4.287326 TCTTGTGTATGTATTGGTGGGTGA 59.713 41.667 0.00 0.00 0.00 4.02
1253 5157 4.853468 TGTGTATGTATTGGTGGGTGAT 57.147 40.909 0.00 0.00 0.00 3.06
1254 5158 4.522114 TGTGTATGTATTGGTGGGTGATG 58.478 43.478 0.00 0.00 0.00 3.07
1255 5159 3.315191 GTGTATGTATTGGTGGGTGATGC 59.685 47.826 0.00 0.00 0.00 3.91
1256 5160 2.824689 ATGTATTGGTGGGTGATGCA 57.175 45.000 0.00 0.00 0.00 3.96
1257 5161 2.127271 TGTATTGGTGGGTGATGCAG 57.873 50.000 0.00 0.00 0.00 4.41
1261 5165 1.136961 TTGGTGGGTGATGCAGGGTA 61.137 55.000 0.00 0.00 0.00 3.69
1262 5166 1.077716 GGTGGGTGATGCAGGGTAC 60.078 63.158 0.00 0.00 0.00 3.34
1317 5221 3.740044 GCGCTAGCAAACTACAATTGA 57.260 42.857 16.45 0.00 44.35 2.57
1345 5249 6.417191 TTGAGTTTATTATGTCTTCGTGGC 57.583 37.500 0.00 0.00 0.00 5.01
1589 5499 3.066814 CTGCTGCAAGGGAAGGGC 61.067 66.667 3.02 0.00 0.00 5.19
1668 5581 3.370103 GGTTCCGTGGTTTATCTCATCCA 60.370 47.826 0.00 0.00 0.00 3.41
1686 5599 3.772387 TCCACATTCATGGCCTGTTTAA 58.228 40.909 3.32 0.00 39.85 1.52
1737 5658 1.540267 CATTAGGCTGCTGATCCATGC 59.460 52.381 0.00 0.00 0.00 4.06
1757 5679 5.699097 TGCCATTTAACTGTTGTACTTCC 57.301 39.130 2.69 0.00 0.00 3.46
1891 5815 0.391130 TTGCTCGTGGTACAGATGGC 60.391 55.000 0.00 0.00 41.80 4.40
1894 5818 2.125713 CGTGGTACAGATGGCGCA 60.126 61.111 10.83 0.00 41.80 6.09
1914 5839 1.132262 ACAATTGCAGGTAATTCGCGG 59.868 47.619 6.13 0.00 0.00 6.46
1928 5853 4.813296 ATTCGCGGTCCATTTTATTCTC 57.187 40.909 6.13 0.00 0.00 2.87
1932 5857 2.032808 GCGGTCCATTTTATTCTCGAGC 60.033 50.000 7.81 0.00 0.00 5.03
1933 5858 3.194861 CGGTCCATTTTATTCTCGAGCA 58.805 45.455 7.81 0.00 0.00 4.26
1934 5859 3.246226 CGGTCCATTTTATTCTCGAGCAG 59.754 47.826 7.81 0.00 0.00 4.24
1970 5896 8.231692 TGCATAAGTTATGGCTGCTTTATTTA 57.768 30.769 21.56 0.00 36.68 1.40
2004 5930 6.512342 TGTATTGATCATTGCACATGTGAA 57.488 33.333 29.80 17.53 0.00 3.18
2028 5954 9.450807 GAAGCGTAAACAATTGAATTATGCTAT 57.549 29.630 31.73 25.72 46.01 2.97
2195 6133 1.418367 GCAAATGCAACATGCTGCG 59.582 52.632 15.87 3.25 45.74 5.18
2249 6187 3.624861 CCCTATCCGCATGATTATTCTGC 59.375 47.826 0.00 0.00 34.76 4.26
2253 6191 1.267806 CCGCATGATTATTCTGCCACC 59.732 52.381 0.00 0.00 32.24 4.61
2254 6192 1.948834 CGCATGATTATTCTGCCACCA 59.051 47.619 0.00 0.00 32.24 4.17
2255 6193 2.358582 CGCATGATTATTCTGCCACCAA 59.641 45.455 0.00 0.00 32.24 3.67
2307 6248 3.877559 TGTTCAGCATCCAATGAGTAGG 58.122 45.455 0.00 0.00 0.00 3.18
2381 6322 5.332743 AGACAAAATCCCTTTATGGCAGAA 58.667 37.500 0.00 0.00 0.00 3.02
2382 6323 5.185828 AGACAAAATCCCTTTATGGCAGAAC 59.814 40.000 0.00 0.00 0.00 3.01
2387 6328 2.912956 TCCCTTTATGGCAGAACTCTGT 59.087 45.455 8.46 0.00 45.45 3.41
2391 6332 4.142816 CCTTTATGGCAGAACTCTGTTTCG 60.143 45.833 8.46 0.00 45.45 3.46
2393 6334 1.581934 TGGCAGAACTCTGTTTCGTG 58.418 50.000 8.46 0.00 45.45 4.35
2406 6347 7.210873 ACTCTGTTTCGTGAAGAGAATACTTT 58.789 34.615 5.95 0.00 39.91 2.66
2431 6372 1.420430 TCATTTAGAGTAGGGGCCCG 58.580 55.000 18.95 0.00 0.00 6.13
2533 6474 9.755122 ACTTCCTCATTTAGCTTAAATTACCTT 57.245 29.630 0.00 0.00 36.29 3.50
2535 6476 9.528489 TTCCTCATTTAGCTTAAATTACCTTGT 57.472 29.630 0.00 0.00 36.29 3.16
2541 6482 8.797350 TTTAGCTTAAATTACCTTGTACTCCC 57.203 34.615 0.00 0.00 0.00 4.30
2542 6483 6.638021 AGCTTAAATTACCTTGTACTCCCT 57.362 37.500 0.00 0.00 0.00 4.20
2543 6484 6.651086 AGCTTAAATTACCTTGTACTCCCTC 58.349 40.000 0.00 0.00 0.00 4.30
2544 6485 5.821470 GCTTAAATTACCTTGTACTCCCTCC 59.179 44.000 0.00 0.00 0.00 4.30
2545 6486 4.482952 AAATTACCTTGTACTCCCTCCG 57.517 45.455 0.00 0.00 0.00 4.63
2546 6487 2.610438 TTACCTTGTACTCCCTCCGT 57.390 50.000 0.00 0.00 0.00 4.69
2547 6488 2.134789 TACCTTGTACTCCCTCCGTC 57.865 55.000 0.00 0.00 0.00 4.79
2548 6489 0.614134 ACCTTGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
2549 6490 1.328430 CCTTGTACTCCCTCCGTCCC 61.328 65.000 0.00 0.00 0.00 4.46
2550 6491 0.613853 CTTGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
2551 6492 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2552 6493 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2553 6494 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2554 6495 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2555 6496 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2556 6497 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2557 6498 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2558 6499 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2559 6500 3.452878 TCCCTCCGTCCCAAAATAAGTA 58.547 45.455 0.00 0.00 0.00 2.24
2560 6501 4.042174 TCCCTCCGTCCCAAAATAAGTAT 58.958 43.478 0.00 0.00 0.00 2.12
2561 6502 4.102054 TCCCTCCGTCCCAAAATAAGTATC 59.898 45.833 0.00 0.00 0.00 2.24
2562 6503 4.102681 CCCTCCGTCCCAAAATAAGTATCT 59.897 45.833 0.00 0.00 0.00 1.98
2563 6504 5.397559 CCCTCCGTCCCAAAATAAGTATCTT 60.398 44.000 0.00 0.00 0.00 2.40
2564 6505 6.183361 CCCTCCGTCCCAAAATAAGTATCTTA 60.183 42.308 0.00 0.00 0.00 2.10
2565 6506 7.277396 CCTCCGTCCCAAAATAAGTATCTTAA 58.723 38.462 0.00 0.00 0.00 1.85
2566 6507 7.226128 CCTCCGTCCCAAAATAAGTATCTTAAC 59.774 40.741 0.00 0.00 0.00 2.01
2567 6508 7.049754 TCCGTCCCAAAATAAGTATCTTAACC 58.950 38.462 0.00 0.00 0.00 2.85
2568 6509 7.052248 CCGTCCCAAAATAAGTATCTTAACCT 58.948 38.462 0.00 0.00 0.00 3.50
2569 6510 7.555195 CCGTCCCAAAATAAGTATCTTAACCTT 59.445 37.037 0.00 0.00 0.00 3.50
2570 6511 9.603921 CGTCCCAAAATAAGTATCTTAACCTTA 57.396 33.333 0.00 0.00 0.00 2.69
2609 6550 9.694137 ATTAGAGTTAGTACAAAGTTGAGACAC 57.306 33.333 0.00 0.00 0.00 3.67
2610 6551 7.349412 AGAGTTAGTACAAAGTTGAGACACT 57.651 36.000 0.00 0.00 0.00 3.55
2611 6552 7.783042 AGAGTTAGTACAAAGTTGAGACACTT 58.217 34.615 0.00 0.00 38.74 3.16
2612 6553 8.910944 AGAGTTAGTACAAAGTTGAGACACTTA 58.089 33.333 0.00 0.00 35.87 2.24
2613 6554 9.694137 GAGTTAGTACAAAGTTGAGACACTTAT 57.306 33.333 0.00 0.00 35.87 1.73
2618 6559 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2619 6560 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2620 6561 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2621 6562 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2622 6563 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2623 6564 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2624 6565 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2625 6566 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2626 6567 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2627 6568 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2628 6569 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2666 6607 7.476540 TGTGTGTTTCCTGTACTGATACTAT 57.523 36.000 0.60 0.00 32.00 2.12
2673 6614 5.333581 TCCTGTACTGATACTATCATGGGG 58.666 45.833 0.60 0.13 38.85 4.96
2835 6776 2.495155 ATGCACAGTTGATGGCTGTA 57.505 45.000 0.00 0.00 44.43 2.74
3105 7046 7.870954 CACACTGTAATCCATATACCGTATGTT 59.129 37.037 0.98 0.00 0.00 2.71
3191 7133 5.329399 AGGAAAATGTTATGCAAGGTGGTA 58.671 37.500 0.00 0.00 0.00 3.25
3202 7150 9.301153 GTTATGCAAGGTGGTATAAATTTTCTG 57.699 33.333 0.00 0.00 29.18 3.02
3204 7152 6.919721 TGCAAGGTGGTATAAATTTTCTGTC 58.080 36.000 0.00 0.00 0.00 3.51
3205 7153 6.491745 TGCAAGGTGGTATAAATTTTCTGTCA 59.508 34.615 0.00 0.00 0.00 3.58
3206 7154 7.029563 GCAAGGTGGTATAAATTTTCTGTCAG 58.970 38.462 0.00 0.00 0.00 3.51
3207 7155 7.309194 GCAAGGTGGTATAAATTTTCTGTCAGT 60.309 37.037 0.00 0.00 0.00 3.41
3208 7156 9.226606 CAAGGTGGTATAAATTTTCTGTCAGTA 57.773 33.333 0.00 0.00 0.00 2.74
3244 7192 6.872628 ACATGATGCATCGTTCTTATGAAT 57.127 33.333 18.92 0.90 34.40 2.57
3280 7229 8.100791 TGGAGCAATAACAGTACTCTATTTTGT 58.899 33.333 0.00 0.00 0.00 2.83
3322 7271 4.953667 TCATGTTCATATCTGGAGCAGAC 58.046 43.478 0.00 0.00 43.63 3.51
3323 7272 4.406649 TCATGTTCATATCTGGAGCAGACA 59.593 41.667 0.00 0.00 43.63 3.41
3324 7273 4.128925 TGTTCATATCTGGAGCAGACAC 57.871 45.455 0.00 0.00 43.63 3.67
3325 7274 3.515104 TGTTCATATCTGGAGCAGACACA 59.485 43.478 0.00 0.00 43.63 3.72
3326 7275 4.162888 TGTTCATATCTGGAGCAGACACAT 59.837 41.667 0.00 0.00 43.63 3.21
3327 7276 5.121811 GTTCATATCTGGAGCAGACACATT 58.878 41.667 0.00 0.00 43.63 2.71
3328 7277 5.363562 TCATATCTGGAGCAGACACATTT 57.636 39.130 0.00 0.00 43.63 2.32
3329 7278 5.748402 TCATATCTGGAGCAGACACATTTT 58.252 37.500 0.00 0.00 43.63 1.82
3330 7279 5.587443 TCATATCTGGAGCAGACACATTTTG 59.413 40.000 0.00 0.00 43.63 2.44
3331 7280 3.490439 TCTGGAGCAGACACATTTTGA 57.510 42.857 0.00 0.00 35.39 2.69
3332 7281 3.405831 TCTGGAGCAGACACATTTTGAG 58.594 45.455 0.00 0.00 35.39 3.02
3333 7282 1.881973 TGGAGCAGACACATTTTGAGC 59.118 47.619 0.00 0.00 0.00 4.26
3334 7283 1.200948 GGAGCAGACACATTTTGAGCC 59.799 52.381 0.00 0.00 0.00 4.70
3335 7284 1.881973 GAGCAGACACATTTTGAGCCA 59.118 47.619 0.00 0.00 0.00 4.75
3336 7285 2.294233 GAGCAGACACATTTTGAGCCAA 59.706 45.455 0.00 0.00 0.00 4.52
3337 7286 2.895404 AGCAGACACATTTTGAGCCAAT 59.105 40.909 0.00 0.00 0.00 3.16
3338 7287 4.081406 AGCAGACACATTTTGAGCCAATA 58.919 39.130 0.00 0.00 0.00 1.90
3339 7288 4.523943 AGCAGACACATTTTGAGCCAATAA 59.476 37.500 0.00 0.00 0.00 1.40
3340 7289 5.010922 AGCAGACACATTTTGAGCCAATAAA 59.989 36.000 0.00 0.00 0.00 1.40
3341 7290 5.695816 GCAGACACATTTTGAGCCAATAAAA 59.304 36.000 0.00 0.00 0.00 1.52
3342 7291 6.369615 GCAGACACATTTTGAGCCAATAAAAT 59.630 34.615 0.00 0.00 37.06 1.82
3343 7292 7.095102 GCAGACACATTTTGAGCCAATAAAATT 60.095 33.333 0.00 0.00 35.07 1.82
3344 7293 8.437742 CAGACACATTTTGAGCCAATAAAATTC 58.562 33.333 0.00 0.00 35.07 2.17
3345 7294 8.149647 AGACACATTTTGAGCCAATAAAATTCA 58.850 29.630 0.00 0.00 35.07 2.57
3346 7295 8.086851 ACACATTTTGAGCCAATAAAATTCAC 57.913 30.769 0.00 0.00 35.07 3.18
3347 7296 7.173047 ACACATTTTGAGCCAATAAAATTCACC 59.827 33.333 0.00 0.00 35.07 4.02
3348 7297 6.654582 ACATTTTGAGCCAATAAAATTCACCC 59.345 34.615 0.00 0.00 35.07 4.61
3349 7298 6.432403 TTTTGAGCCAATAAAATTCACCCT 57.568 33.333 0.00 0.00 0.00 4.34
3350 7299 6.432403 TTTGAGCCAATAAAATTCACCCTT 57.568 33.333 0.00 0.00 0.00 3.95
3351 7300 6.432403 TTGAGCCAATAAAATTCACCCTTT 57.568 33.333 0.00 0.00 0.00 3.11
3352 7301 5.792741 TGAGCCAATAAAATTCACCCTTTG 58.207 37.500 0.00 0.00 0.00 2.77
3353 7302 5.306678 TGAGCCAATAAAATTCACCCTTTGT 59.693 36.000 0.00 0.00 0.00 2.83
3354 7303 5.793817 AGCCAATAAAATTCACCCTTTGTC 58.206 37.500 0.00 0.00 0.00 3.18
3355 7304 4.625311 GCCAATAAAATTCACCCTTTGTCG 59.375 41.667 0.00 0.00 0.00 4.35
3356 7305 5.565834 GCCAATAAAATTCACCCTTTGTCGA 60.566 40.000 0.00 0.00 0.00 4.20
3357 7306 6.451393 CCAATAAAATTCACCCTTTGTCGAA 58.549 36.000 0.00 0.00 0.00 3.71
3358 7307 6.926272 CCAATAAAATTCACCCTTTGTCGAAA 59.074 34.615 0.00 0.00 0.00 3.46
3359 7308 7.439655 CCAATAAAATTCACCCTTTGTCGAAAA 59.560 33.333 0.00 0.00 0.00 2.29
3360 7309 8.821894 CAATAAAATTCACCCTTTGTCGAAAAA 58.178 29.630 0.00 0.00 0.00 1.94
3475 7424 5.953183 TGCTATGTTGTTTTGAGCTATTGG 58.047 37.500 0.00 0.00 34.19 3.16
3558 7507 8.579863 CAGAGGGGATAATTTGAATTGATAACC 58.420 37.037 0.00 0.00 0.00 2.85
3695 7671 8.194104 AGCATAAACTGTTGTTGACATGTTTTA 58.806 29.630 0.00 0.00 38.87 1.52
3836 7815 0.392998 CTAAACAGCGCCCTGACCAT 60.393 55.000 2.29 0.00 41.77 3.55
3853 7832 5.305585 TGACCATCAAGAAACTGACCTTAC 58.694 41.667 0.00 0.00 0.00 2.34
3894 7873 7.064728 CCAGTTTATTAGTAGAAACAGTCTGGC 59.935 40.741 4.53 0.00 37.81 4.85
3905 7884 5.536161 AGAAACAGTCTGGCATTAATGTTGT 59.464 36.000 16.61 8.94 34.29 3.32
4617 8610 2.180276 GTGGAGAGGAGGCTGAGTTTA 58.820 52.381 0.00 0.00 0.00 2.01
4620 8613 2.484594 GGAGAGGAGGCTGAGTTTATGC 60.485 54.545 0.00 0.00 0.00 3.14
4654 8647 4.730035 GCTGAAGATGTGCTCTTGTTATGC 60.730 45.833 0.00 0.00 44.42 3.14
4666 8659 5.278463 GCTCTTGTTATGCTTCAGGAAACAA 60.278 40.000 0.00 0.00 37.62 2.83
4671 8664 5.827797 TGTTATGCTTCAGGAAACAAGAGTT 59.172 36.000 0.00 0.00 40.40 3.01
4672 8665 6.017109 TGTTATGCTTCAGGAAACAAGAGTTC 60.017 38.462 0.00 0.00 36.84 3.01
4714 8707 9.378597 GGTTCTTCGTTAAATACTTGTTCTTTC 57.621 33.333 0.00 0.00 0.00 2.62
4741 8736 7.584122 AATCTAGTTAGAATTCGACAGGCTA 57.416 36.000 14.65 6.47 35.69 3.93
4789 8784 2.358898 GGTAGCATGCGTGATGGAATTT 59.641 45.455 13.01 0.00 31.99 1.82
4790 8785 2.572191 AGCATGCGTGATGGAATTTG 57.428 45.000 13.01 0.00 31.99 2.32
4922 8919 5.414454 TCTTGTTTGGTGTATGCCATCTAAC 59.586 40.000 0.00 0.00 39.45 2.34
4977 8974 6.154021 GGAAATATGATTAGCTGGAATGGCAT 59.846 38.462 0.00 0.00 0.00 4.40
4978 8975 6.525578 AATATGATTAGCTGGAATGGCATG 57.474 37.500 0.00 0.00 0.00 4.06
4979 8976 2.589720 TGATTAGCTGGAATGGCATGG 58.410 47.619 0.00 0.00 0.00 3.66
5024 9021 5.913137 ACAAACAACACAGATTTGAGGAA 57.087 34.783 3.13 0.00 36.91 3.36
5047 9045 7.118245 GGAATTTTCACCATGATCAAAACTTCC 59.882 37.037 16.70 16.70 0.00 3.46
5062 9060 7.479980 TCAAAACTTCCTTGTTTATGACACAG 58.520 34.615 0.00 0.00 38.98 3.66
5068 9066 5.587289 TCCTTGTTTATGACACAGCAAAAC 58.413 37.500 0.00 0.00 38.18 2.43
5073 9071 6.804677 TGTTTATGACACAGCAAAACAGAAT 58.195 32.000 0.00 0.00 35.69 2.40
5086 9084 0.661187 ACAGAATTGCAAACGCAGCG 60.661 50.000 14.82 14.82 41.34 5.18
5087 9085 0.661187 CAGAATTGCAAACGCAGCGT 60.661 50.000 16.61 16.61 43.97 5.07
5088 9086 0.661187 AGAATTGCAAACGCAGCGTG 60.661 50.000 23.78 11.47 39.99 5.34
5089 9087 0.934436 GAATTGCAAACGCAGCGTGT 60.934 50.000 23.78 14.53 39.99 4.49
5090 9088 0.934436 AATTGCAAACGCAGCGTGTC 60.934 50.000 23.78 13.89 39.99 3.67
5091 9089 1.785041 ATTGCAAACGCAGCGTGTCT 61.785 50.000 23.78 2.17 39.99 3.41
5092 9090 2.127609 GCAAACGCAGCGTGTCTC 60.128 61.111 23.78 6.15 39.99 3.36
5093 9091 2.881266 GCAAACGCAGCGTGTCTCA 61.881 57.895 23.78 0.00 39.99 3.27
5094 9092 1.641140 CAAACGCAGCGTGTCTCAA 59.359 52.632 23.78 0.00 39.99 3.02
5186 9197 2.635427 GTCAGTCCCCTTTCTCTCTGTT 59.365 50.000 0.00 0.00 0.00 3.16
5214 9225 1.871676 CATCGTCGACCTCGGAATCTA 59.128 52.381 10.58 0.00 40.29 1.98
5237 9248 1.203300 TCATCAGTCCCCTTGTCCTCA 60.203 52.381 0.00 0.00 0.00 3.86
5255 9266 4.070716 CCTCAGTTTCCATAGCATCATCC 58.929 47.826 0.00 0.00 0.00 3.51
5276 9287 4.118410 CCACTTCAGAATCTTCCTCATCG 58.882 47.826 0.00 0.00 0.00 3.84
5360 9371 5.123502 GCAGATCTGGAATATACATGCTTGG 59.876 44.000 23.89 0.00 0.00 3.61
5377 9396 3.825308 CTTGGATTACACACACATGCAC 58.175 45.455 0.00 0.00 0.00 4.57
5384 9403 2.176926 ACACACATGCACGCACGAA 61.177 52.632 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.472909 GCCATCCAACTGTAGCCGC 61.473 63.158 0.00 0.00 0.00 6.53
1 2 2.173669 CGCCATCCAACTGTAGCCG 61.174 63.158 0.00 0.00 0.00 5.52
2 3 1.078426 ACGCCATCCAACTGTAGCC 60.078 57.895 0.00 0.00 0.00 3.93
3 4 2.384203 GACGCCATCCAACTGTAGC 58.616 57.895 0.00 0.00 0.00 3.58
18 19 2.278206 CACGGATGCGAGAGGACG 60.278 66.667 15.49 0.00 0.00 4.79
19 20 1.226717 GACACGGATGCGAGAGGAC 60.227 63.158 15.49 0.00 0.00 3.85
20 21 2.415608 GGACACGGATGCGAGAGGA 61.416 63.158 15.49 0.00 0.00 3.71
21 22 2.105128 GGACACGGATGCGAGAGG 59.895 66.667 15.49 2.12 0.00 3.69
22 23 1.517257 GTGGACACGGATGCGAGAG 60.517 63.158 15.49 5.24 0.00 3.20
23 24 2.571757 GTGGACACGGATGCGAGA 59.428 61.111 15.49 0.00 0.00 4.04
33 34 2.342648 GGGTCAGTCCGTGGACAC 59.657 66.667 20.51 10.81 46.76 3.67
34 35 2.920912 GGGGTCAGTCCGTGGACA 60.921 66.667 20.51 0.00 46.76 4.02
35 36 3.703127 GGGGGTCAGTCCGTGGAC 61.703 72.222 11.14 11.14 44.86 4.02
50 51 4.367023 TTCGTTCGCGGACAGGGG 62.367 66.667 19.39 0.40 41.70 4.79
51 52 2.809601 CTTCGTTCGCGGACAGGG 60.810 66.667 19.39 0.82 41.70 4.45
52 53 2.758770 TTCCTTCGTTCGCGGACAGG 62.759 60.000 19.39 17.57 41.70 4.00
53 54 0.942410 TTTCCTTCGTTCGCGGACAG 60.942 55.000 19.39 8.19 41.70 3.51
54 55 0.942410 CTTTCCTTCGTTCGCGGACA 60.942 55.000 19.39 1.57 41.70 4.02
55 56 0.665369 TCTTTCCTTCGTTCGCGGAC 60.665 55.000 7.71 7.71 41.70 4.79
56 57 0.032403 TTCTTTCCTTCGTTCGCGGA 59.968 50.000 6.13 0.00 41.70 5.54
57 58 0.863144 TTTCTTTCCTTCGTTCGCGG 59.137 50.000 6.13 0.00 41.70 6.46
58 59 2.875080 ATTTCTTTCCTTCGTTCGCG 57.125 45.000 0.00 0.00 42.98 5.87
59 60 3.119628 GCAAATTTCTTTCCTTCGTTCGC 59.880 43.478 0.00 0.00 0.00 4.70
60 61 3.357823 CGCAAATTTCTTTCCTTCGTTCG 59.642 43.478 0.00 0.00 0.00 3.95
61 62 3.668656 CCGCAAATTTCTTTCCTTCGTTC 59.331 43.478 0.00 0.00 0.00 3.95
62 63 3.552068 CCCGCAAATTTCTTTCCTTCGTT 60.552 43.478 0.00 0.00 0.00 3.85
63 64 2.030274 CCCGCAAATTTCTTTCCTTCGT 60.030 45.455 0.00 0.00 0.00 3.85
64 65 2.030274 ACCCGCAAATTTCTTTCCTTCG 60.030 45.455 0.00 0.00 0.00 3.79
65 66 3.660501 ACCCGCAAATTTCTTTCCTTC 57.339 42.857 0.00 0.00 0.00 3.46
66 67 4.262292 GGTAACCCGCAAATTTCTTTCCTT 60.262 41.667 0.00 0.00 0.00 3.36
67 68 3.257375 GGTAACCCGCAAATTTCTTTCCT 59.743 43.478 0.00 0.00 0.00 3.36
68 69 3.581755 GGTAACCCGCAAATTTCTTTCC 58.418 45.455 0.00 0.00 0.00 3.13
82 83 0.252197 AGCATCTCCAACGGTAACCC 59.748 55.000 0.00 0.00 0.00 4.11
83 84 1.653151 GAGCATCTCCAACGGTAACC 58.347 55.000 0.00 0.00 0.00 2.85
96 97 6.985188 TGAAAGTGTAATGGTAAGAGCATC 57.015 37.500 0.00 0.00 34.88 3.91
97 98 7.394359 ACATTGAAAGTGTAATGGTAAGAGCAT 59.606 33.333 0.00 0.00 38.04 3.79
98 99 6.714810 ACATTGAAAGTGTAATGGTAAGAGCA 59.285 34.615 0.00 0.00 38.33 4.26
99 100 7.145932 ACATTGAAAGTGTAATGGTAAGAGC 57.854 36.000 0.00 0.00 38.33 4.09
125 126 6.900568 AAGATTTTGACAAATGCGTGAAAA 57.099 29.167 0.50 0.00 36.61 2.29
156 157 9.886132 GGGATAAGAACAAAGTATCTTCTAACA 57.114 33.333 0.00 0.00 37.16 2.41
168 169 5.649782 ATGCACAAGGGATAAGAACAAAG 57.350 39.130 0.00 0.00 0.00 2.77
175 176 7.826252 AGCTTACATATATGCACAAGGGATAAG 59.174 37.037 12.79 10.14 33.20 1.73
176 177 7.689299 AGCTTACATATATGCACAAGGGATAA 58.311 34.615 12.79 0.45 33.20 1.75
177 178 7.257790 AGCTTACATATATGCACAAGGGATA 57.742 36.000 12.79 0.00 34.61 2.59
195 196 2.671888 GCCGGTTCTTCTGTAAGCTTAC 59.328 50.000 26.50 26.50 32.36 2.34
202 203 3.695830 ATCTTTGCCGGTTCTTCTGTA 57.304 42.857 1.90 0.00 0.00 2.74
209 210 2.093658 TCACCTCTATCTTTGCCGGTTC 60.094 50.000 1.90 0.00 0.00 3.62
213 214 1.936547 GCTTCACCTCTATCTTTGCCG 59.063 52.381 0.00 0.00 0.00 5.69
251 252 2.487762 CCGCTACTTTGCTTTCCATGAA 59.512 45.455 0.00 0.00 0.00 2.57
253 254 2.083774 TCCGCTACTTTGCTTTCCATG 58.916 47.619 0.00 0.00 0.00 3.66
254 255 2.488153 GTTCCGCTACTTTGCTTTCCAT 59.512 45.455 0.00 0.00 0.00 3.41
290 291 4.753516 ACCATATGATCGTGACCTTGAA 57.246 40.909 3.65 0.00 0.00 2.69
292 293 4.191544 ACAACCATATGATCGTGACCTTG 58.808 43.478 3.65 0.00 0.00 3.61
293 294 4.487714 ACAACCATATGATCGTGACCTT 57.512 40.909 3.65 0.00 0.00 3.50
294 295 4.649674 ACTACAACCATATGATCGTGACCT 59.350 41.667 3.65 0.00 0.00 3.85
295 296 4.745125 CACTACAACCATATGATCGTGACC 59.255 45.833 3.65 0.00 0.00 4.02
296 297 4.209288 GCACTACAACCATATGATCGTGAC 59.791 45.833 3.65 0.00 0.00 3.67
297 298 4.368315 GCACTACAACCATATGATCGTGA 58.632 43.478 3.65 0.00 0.00 4.35
299 300 3.388024 AGGCACTACAACCATATGATCGT 59.612 43.478 3.65 0.30 36.02 3.73
301 302 3.990469 CGAGGCACTACAACCATATGATC 59.010 47.826 3.65 0.00 41.55 2.92
302 303 3.803715 GCGAGGCACTACAACCATATGAT 60.804 47.826 3.65 0.00 41.55 2.45
303 304 2.483013 GCGAGGCACTACAACCATATGA 60.483 50.000 3.65 0.00 41.55 2.15
316 319 1.731720 ATGAGAAGAAAGCGAGGCAC 58.268 50.000 0.00 0.00 0.00 5.01
332 335 9.889128 TCAAATACAGATGTAACTGATGAATGA 57.111 29.630 0.00 0.00 40.63 2.57
334 337 8.834465 GCTCAAATACAGATGTAACTGATGAAT 58.166 33.333 0.00 0.00 40.63 2.57
354 357 2.879646 AACGGAATACGGTTTGCTCAAA 59.120 40.909 0.00 0.00 41.94 2.69
398 401 1.001520 AGTTTTGTTATTTGCGCCCCC 59.998 47.619 4.18 0.00 0.00 5.40
399 402 2.448926 AGTTTTGTTATTTGCGCCCC 57.551 45.000 4.18 0.00 0.00 5.80
400 403 2.912345 CGTAGTTTTGTTATTTGCGCCC 59.088 45.455 4.18 0.00 0.00 6.13
403 406 6.461698 GTCATCTCGTAGTTTTGTTATTTGCG 59.538 38.462 0.00 0.00 0.00 4.85
407 410 8.373048 TGTTGTCATCTCGTAGTTTTGTTATT 57.627 30.769 0.00 0.00 0.00 1.40
417 420 2.959516 TGCCTTGTTGTCATCTCGTAG 58.040 47.619 0.00 0.00 0.00 3.51
421 427 3.084039 TCCAATGCCTTGTTGTCATCTC 58.916 45.455 0.91 0.00 0.00 2.75
424 430 1.895131 GGTCCAATGCCTTGTTGTCAT 59.105 47.619 0.91 0.00 0.00 3.06
433 439 3.737559 TTGTAAGATGGTCCAATGCCT 57.262 42.857 0.00 0.00 0.00 4.75
444 450 6.255453 GCTGCTTCTCTAGACTTTGTAAGATG 59.745 42.308 0.00 0.00 0.00 2.90
455 461 3.311486 ACAACAGCTGCTTCTCTAGAC 57.689 47.619 15.27 0.00 0.00 2.59
460 466 3.561725 ACTTTGTACAACAGCTGCTTCTC 59.438 43.478 15.27 2.69 0.00 2.87
489 495 7.554476 AGTGAGAGTTACTTTTTCTGAGCTTTT 59.446 33.333 0.00 0.00 0.00 2.27
490 496 7.051000 AGTGAGAGTTACTTTTTCTGAGCTTT 58.949 34.615 0.00 0.00 0.00 3.51
491 497 6.587273 AGTGAGAGTTACTTTTTCTGAGCTT 58.413 36.000 0.00 0.00 0.00 3.74
492 498 6.168270 AGTGAGAGTTACTTTTTCTGAGCT 57.832 37.500 0.00 0.00 0.00 4.09
493 499 6.852858 AAGTGAGAGTTACTTTTTCTGAGC 57.147 37.500 0.00 0.00 34.91 4.26
494 500 8.425577 TGAAAGTGAGAGTTACTTTTTCTGAG 57.574 34.615 4.81 0.00 45.52 3.35
496 502 9.495754 CTTTGAAAGTGAGAGTTACTTTTTCTG 57.504 33.333 4.81 0.00 45.52 3.02
497 503 8.184848 GCTTTGAAAGTGAGAGTTACTTTTTCT 58.815 33.333 6.81 0.00 45.52 2.52
498 504 7.968405 TGCTTTGAAAGTGAGAGTTACTTTTTC 59.032 33.333 6.81 0.00 45.52 2.29
499 505 7.826690 TGCTTTGAAAGTGAGAGTTACTTTTT 58.173 30.769 6.81 0.00 45.52 1.94
500 506 7.391148 TGCTTTGAAAGTGAGAGTTACTTTT 57.609 32.000 6.81 0.00 45.52 2.27
502 508 6.183360 GGTTGCTTTGAAAGTGAGAGTTACTT 60.183 38.462 6.81 0.00 39.92 2.24
503 509 5.297029 GGTTGCTTTGAAAGTGAGAGTTACT 59.703 40.000 6.81 0.00 0.00 2.24
504 510 5.511571 GGTTGCTTTGAAAGTGAGAGTTAC 58.488 41.667 6.81 0.00 0.00 2.50
505 511 4.272504 CGGTTGCTTTGAAAGTGAGAGTTA 59.727 41.667 6.81 0.00 0.00 2.24
508 514 2.872245 TCGGTTGCTTTGAAAGTGAGAG 59.128 45.455 6.81 0.00 0.00 3.20
509 515 2.612212 GTCGGTTGCTTTGAAAGTGAGA 59.388 45.455 6.81 0.00 0.00 3.27
510 516 2.599848 CGTCGGTTGCTTTGAAAGTGAG 60.600 50.000 6.81 0.00 0.00 3.51
511 517 1.329292 CGTCGGTTGCTTTGAAAGTGA 59.671 47.619 6.81 0.00 0.00 3.41
512 518 1.329292 TCGTCGGTTGCTTTGAAAGTG 59.671 47.619 6.81 0.00 0.00 3.16
513 519 1.658994 TCGTCGGTTGCTTTGAAAGT 58.341 45.000 6.81 0.00 0.00 2.66
514 520 2.639751 CTTCGTCGGTTGCTTTGAAAG 58.360 47.619 0.00 0.00 0.00 2.62
516 522 0.306533 GCTTCGTCGGTTGCTTTGAA 59.693 50.000 0.00 0.00 0.00 2.69
517 523 1.827315 CGCTTCGTCGGTTGCTTTGA 61.827 55.000 0.00 0.00 0.00 2.69
519 525 2.935955 CGCTTCGTCGGTTGCTTT 59.064 55.556 0.00 0.00 0.00 3.51
520 526 3.712881 GCGCTTCGTCGGTTGCTT 61.713 61.111 0.00 0.00 0.00 3.91
523 529 4.117372 GTCGCGCTTCGTCGGTTG 62.117 66.667 5.56 0.00 39.67 3.77
540 546 5.982676 TAGTAGTTACTAGCAGCAGGCACG 61.983 50.000 0.00 0.00 40.46 5.34
541 547 3.380637 TAGTAGTTACTAGCAGCAGGCAC 59.619 47.826 0.00 0.00 40.46 5.01
545 551 5.232610 ACGTTAGTAGTTACTAGCAGCAG 57.767 43.478 11.88 0.00 39.17 4.24
574 4304 5.414789 TGTCCACTTTATTCGAGAATCCA 57.585 39.130 1.11 0.00 32.50 3.41
601 4331 8.337532 CAATCAAATGCGATAGAATGTTACAGA 58.662 33.333 0.00 0.00 31.64 3.41
603 4333 8.207521 TCAATCAAATGCGATAGAATGTTACA 57.792 30.769 0.00 0.00 31.64 2.41
639 4370 8.458843 CACAAATTCAAATACGTATTCTCCCTT 58.541 33.333 20.57 9.50 0.00 3.95
641 4372 7.758495 ACACAAATTCAAATACGTATTCTCCC 58.242 34.615 20.57 0.00 0.00 4.30
645 4395 8.649810 ACGAACACAAATTCAAATACGTATTC 57.350 30.769 20.57 4.23 0.00 1.75
664 4415 5.742453 GCATCTCTCTAAACGAATACGAACA 59.258 40.000 0.00 0.00 42.66 3.18
733 4487 0.553862 TAAGGGCCTGGGGGAAATCA 60.554 55.000 6.92 0.00 33.58 2.57
841 4602 4.083862 AAGAGGAGTTCGGCCGGC 62.084 66.667 27.83 21.18 0.00 6.13
843 4604 2.184579 GGAAGAGGAGTTCGGCCG 59.815 66.667 22.12 22.12 0.00 6.13
844 4605 2.585153 GGGAAGAGGAGTTCGGCC 59.415 66.667 0.00 0.00 0.00 6.13
849 4610 2.960688 GCAGCGGGGAAGAGGAGTT 61.961 63.158 0.00 0.00 0.00 3.01
850 4611 3.394836 GCAGCGGGGAAGAGGAGT 61.395 66.667 0.00 0.00 0.00 3.85
953 4726 1.375523 CGAAACCCTAGCCGCTTGT 60.376 57.895 0.00 0.00 0.00 3.16
1229 5019 4.287326 TCACCCACCAATACATACACAAGA 59.713 41.667 0.00 0.00 0.00 3.02
1230 5020 4.584874 TCACCCACCAATACATACACAAG 58.415 43.478 0.00 0.00 0.00 3.16
1231 5021 4.642466 TCACCCACCAATACATACACAA 57.358 40.909 0.00 0.00 0.00 3.33
1233 5023 3.315191 GCATCACCCACCAATACATACAC 59.685 47.826 0.00 0.00 0.00 2.90
1245 5149 1.077716 GGTACCCTGCATCACCCAC 60.078 63.158 0.00 0.00 0.00 4.61
1261 5165 0.692476 TAAGCAGCACATCACAGGGT 59.308 50.000 0.00 0.00 0.00 4.34
1262 5166 1.674441 CATAAGCAGCACATCACAGGG 59.326 52.381 0.00 0.00 0.00 4.45
1290 5194 0.250295 AGTTTGCTAGCGCCAAGACA 60.250 50.000 10.77 2.12 34.43 3.41
1296 5200 2.418628 TCAATTGTAGTTTGCTAGCGCC 59.581 45.455 10.77 0.00 34.43 6.53
1317 5221 7.065803 CACGAAGACATAATAAACTCAATGGGT 59.934 37.037 0.00 0.00 0.00 4.51
1345 5249 3.032017 CAGAACTACTGCCCCATATCG 57.968 52.381 0.00 0.00 39.86 2.92
1487 5397 2.798501 CGGCAGCGTGGTTGTATCG 61.799 63.158 0.00 0.00 0.00 2.92
1589 5499 3.443925 TCCTCTGGCGTCAGCTCG 61.444 66.667 13.43 2.88 44.37 5.03
1668 5581 6.438425 AGAAGAATTAAACAGGCCATGAATGT 59.562 34.615 5.01 0.00 0.00 2.71
1686 5599 6.154877 ACATCACAGATGAGACAGAGAAGAAT 59.845 38.462 13.46 0.00 38.57 2.40
1737 5658 7.162082 AGAGAGGAAGTACAACAGTTAAATGG 58.838 38.462 7.93 0.00 0.00 3.16
1757 5679 3.955551 GTGAAACCTAGGGGAGTAGAGAG 59.044 52.174 14.81 0.00 36.25 3.20
1894 5818 1.132262 CCGCGAATTACCTGCAATTGT 59.868 47.619 8.23 0.00 0.00 2.71
1914 5839 5.220681 GGAACTGCTCGAGAATAAAATGGAC 60.221 44.000 18.75 0.00 0.00 4.02
1928 5853 1.344438 TGCATATAGGGGAACTGCTCG 59.656 52.381 0.00 0.00 34.02 5.03
1932 5857 7.554118 CCATAACTTATGCATATAGGGGAACTG 59.446 40.741 7.36 0.00 34.85 3.16
1933 5858 7.633789 CCATAACTTATGCATATAGGGGAACT 58.366 38.462 7.36 0.00 34.85 3.01
1934 5859 6.318900 GCCATAACTTATGCATATAGGGGAAC 59.681 42.308 14.98 0.18 34.85 3.62
1970 5896 6.351286 GCAATGATCAATACAAGGGGAAAACT 60.351 38.462 0.00 0.00 0.00 2.66
2249 6187 7.389803 TGATAATTTACTGACATGTTGGTGG 57.610 36.000 0.00 0.00 0.00 4.61
2307 6248 9.378551 CTAGGGGCTTTTAAATTTTATTTGTCC 57.621 33.333 0.00 0.00 0.00 4.02
2325 6266 2.778270 GACAGTAATTTCCCTAGGGGCT 59.222 50.000 28.19 12.90 43.94 5.19
2342 6283 4.530094 TTGTCTTGTAAAAGTGCGACAG 57.470 40.909 0.00 0.00 33.55 3.51
2381 6322 6.334102 AGTATTCTCTTCACGAAACAGAGT 57.666 37.500 0.00 0.00 36.27 3.24
2382 6323 7.644986 AAAGTATTCTCTTCACGAAACAGAG 57.355 36.000 0.00 0.00 36.19 3.35
2406 6347 6.370453 GGGCCCCTACTCTAAATGATAAAAA 58.630 40.000 12.23 0.00 0.00 1.94
2431 6372 7.938563 TGTAAAGGTGCAACAATAATCAAAC 57.061 32.000 3.64 0.00 39.98 2.93
2481 6422 2.132762 CTTGGCGAAACGTAACTCTGT 58.867 47.619 0.00 0.00 0.00 3.41
2533 6474 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
2534 6475 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
2535 6476 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2536 6477 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2537 6478 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2538 6479 2.271777 ACTTATTTTGGGACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
2539 6480 2.801077 ACTTATTTTGGGACGGAGGG 57.199 50.000 0.00 0.00 0.00 4.30
2540 6481 5.291905 AGATACTTATTTTGGGACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
2541 6482 7.226128 GGTTAAGATACTTATTTTGGGACGGAG 59.774 40.741 0.00 0.00 0.00 4.63
2542 6483 7.049754 GGTTAAGATACTTATTTTGGGACGGA 58.950 38.462 0.00 0.00 0.00 4.69
2543 6484 7.052248 AGGTTAAGATACTTATTTTGGGACGG 58.948 38.462 0.00 0.00 0.00 4.79
2544 6485 8.502105 AAGGTTAAGATACTTATTTTGGGACG 57.498 34.615 0.00 0.00 0.00 4.79
2583 6524 9.694137 GTGTCTCAACTTTGTACTAACTCTAAT 57.306 33.333 0.00 0.00 0.00 1.73
2584 6525 8.910944 AGTGTCTCAACTTTGTACTAACTCTAA 58.089 33.333 0.00 0.00 0.00 2.10
2585 6526 8.461249 AGTGTCTCAACTTTGTACTAACTCTA 57.539 34.615 0.00 0.00 0.00 2.43
2586 6527 7.349412 AGTGTCTCAACTTTGTACTAACTCT 57.651 36.000 0.00 0.00 0.00 3.24
2587 6528 9.694137 ATAAGTGTCTCAACTTTGTACTAACTC 57.306 33.333 0.00 0.00 40.77 3.01
2592 6533 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2593 6534 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2594 6535 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2595 6536 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2596 6537 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2597 6538 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2598 6539 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2599 6540 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2600 6541 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2601 6542 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2602 6543 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2603 6544 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2604 6545 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2605 6546 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2606 6547 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2607 6548 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2608 6549 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2609 6550 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2610 6551 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2611 6552 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2612 6553 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2613 6554 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2614 6555 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2615 6556 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2616 6557 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2617 6558 2.149973 TAAAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
2618 6559 4.646492 TGTTATAAAGTACTCCCTCCGTCC 59.354 45.833 0.00 0.00 0.00 4.79
2619 6560 5.841957 TGTTATAAAGTACTCCCTCCGTC 57.158 43.478 0.00 0.00 0.00 4.79
2620 6561 5.659971 ACATGTTATAAAGTACTCCCTCCGT 59.340 40.000 0.00 0.00 0.00 4.69
2621 6562 5.983720 CACATGTTATAAAGTACTCCCTCCG 59.016 44.000 0.00 0.00 0.00 4.63
2622 6563 6.761714 CACACATGTTATAAAGTACTCCCTCC 59.238 42.308 0.00 0.00 0.00 4.30
2623 6564 7.328737 ACACACATGTTATAAAGTACTCCCTC 58.671 38.462 0.00 0.00 34.46 4.30
2624 6565 7.253905 ACACACATGTTATAAAGTACTCCCT 57.746 36.000 0.00 0.00 34.46 4.20
2666 6607 0.893270 CCTGCACGTTTTCCCCATGA 60.893 55.000 0.00 0.00 0.00 3.07
2979 6920 3.505680 AGACGCATTGTGGAGCAAATTAA 59.494 39.130 1.77 0.00 40.91 1.40
3105 7046 7.659799 ACACACTAGTTGCTTATGTATGAAACA 59.340 33.333 0.00 0.00 43.86 2.83
3204 7152 9.643693 TGCATCATGTATGAGTATGTTATACTG 57.356 33.333 6.24 0.00 40.64 2.74
3207 7155 9.520204 CGATGCATCATGTATGAGTATGTTATA 57.480 33.333 25.70 0.00 40.64 0.98
3208 7156 8.037166 ACGATGCATCATGTATGAGTATGTTAT 58.963 33.333 25.70 0.00 40.64 1.89
3244 7192 7.713734 ACTGTTATTGCTCCAGTAGTAACTA 57.286 36.000 10.11 0.00 37.66 2.24
3322 7271 7.361116 GGGTGAATTTTATTGGCTCAAAATGTG 60.361 37.037 5.46 0.00 35.19 3.21
3323 7272 6.654582 GGGTGAATTTTATTGGCTCAAAATGT 59.345 34.615 5.46 0.00 35.19 2.71
3324 7273 6.880529 AGGGTGAATTTTATTGGCTCAAAATG 59.119 34.615 5.46 0.00 35.19 2.32
3325 7274 7.019656 AGGGTGAATTTTATTGGCTCAAAAT 57.980 32.000 0.00 0.00 36.22 1.82
3326 7275 6.432403 AGGGTGAATTTTATTGGCTCAAAA 57.568 33.333 0.00 0.00 0.00 2.44
3327 7276 6.432403 AAGGGTGAATTTTATTGGCTCAAA 57.568 33.333 0.00 0.00 0.00 2.69
3328 7277 6.183361 ACAAAGGGTGAATTTTATTGGCTCAA 60.183 34.615 0.00 0.00 0.00 3.02
3329 7278 5.306678 ACAAAGGGTGAATTTTATTGGCTCA 59.693 36.000 0.00 0.00 0.00 4.26
3330 7279 5.793817 ACAAAGGGTGAATTTTATTGGCTC 58.206 37.500 0.00 0.00 0.00 4.70
3331 7280 5.566627 CGACAAAGGGTGAATTTTATTGGCT 60.567 40.000 0.00 0.00 0.00 4.75
3332 7281 4.625311 CGACAAAGGGTGAATTTTATTGGC 59.375 41.667 0.00 0.00 0.00 4.52
3333 7282 6.019779 TCGACAAAGGGTGAATTTTATTGG 57.980 37.500 0.00 0.00 0.00 3.16
3334 7283 7.938563 TTTCGACAAAGGGTGAATTTTATTG 57.061 32.000 0.00 0.00 0.00 1.90
3335 7284 8.950208 TTTTTCGACAAAGGGTGAATTTTATT 57.050 26.923 0.00 0.00 0.00 1.40
3361 7310 3.953612 TGTTGTGTCTGCTCCAGATTTTT 59.046 39.130 0.00 0.00 42.73 1.94
3362 7311 3.554934 TGTTGTGTCTGCTCCAGATTTT 58.445 40.909 0.00 0.00 42.73 1.82
3363 7312 3.213206 TGTTGTGTCTGCTCCAGATTT 57.787 42.857 0.00 0.00 42.73 2.17
3364 7313 2.936919 TGTTGTGTCTGCTCCAGATT 57.063 45.000 0.00 0.00 42.73 2.40
3365 7314 2.936919 TTGTTGTGTCTGCTCCAGAT 57.063 45.000 0.00 0.00 42.73 2.90
3366 7315 2.708216 TTTGTTGTGTCTGCTCCAGA 57.292 45.000 0.00 0.00 38.25 3.86
3367 7316 3.781079 TTTTTGTTGTGTCTGCTCCAG 57.219 42.857 0.00 0.00 0.00 3.86
3475 7424 8.959705 ATGGGTAGTAGCTAAATCAGTAAAAC 57.040 34.615 0.00 0.00 0.00 2.43
3558 7507 8.776470 AGCACAAATTTTGAATGAAGGTTATTG 58.224 29.630 15.81 0.50 0.00 1.90
3620 7596 6.947464 ACAAAACCAGATACTAGCATGTACT 58.053 36.000 0.00 0.00 0.00 2.73
3666 7642 7.885297 ACATGTCAACAACAGTTTATGCTATT 58.115 30.769 0.00 0.00 42.37 1.73
3695 7671 5.582950 TTGCAATAGAGGTAATGGCCTAT 57.417 39.130 3.32 0.00 39.34 2.57
3746 7722 1.873591 CAAGTGCCACAACTCCACTAC 59.126 52.381 0.00 0.00 38.77 2.73
3823 7802 1.841302 TTCTTGATGGTCAGGGCGCT 61.841 55.000 7.64 0.00 0.00 5.92
3836 7815 8.519799 AATTTTGAGTAAGGTCAGTTTCTTGA 57.480 30.769 0.00 0.00 0.00 3.02
3956 7935 6.482835 TCAAATCGTGTCAACAACAGTTTAG 58.517 36.000 0.00 0.00 38.97 1.85
4129 8110 8.307483 AGATACTCATTGAGTTTCTTTCGAAGA 58.693 33.333 25.20 6.88 44.30 2.87
4401 8382 4.602995 CGTAGAGGAATGTGTAGAAGAGC 58.397 47.826 0.00 0.00 0.00 4.09
4454 8435 0.812811 CATGCTCCTGTCCACATCGG 60.813 60.000 0.00 0.00 0.00 4.18
4617 8610 4.712051 TCTTCAGCAATATACAGGGCAT 57.288 40.909 0.00 0.00 0.00 4.40
4620 8613 4.214971 GCACATCTTCAGCAATATACAGGG 59.785 45.833 0.00 0.00 0.00 4.45
4666 8659 6.432581 ACCAAGTAAAAAGGGAAAGAACTCT 58.567 36.000 0.00 0.00 0.00 3.24
4671 8664 6.038936 CGAAGAACCAAGTAAAAAGGGAAAGA 59.961 38.462 0.00 0.00 0.00 2.52
4672 8665 6.183360 ACGAAGAACCAAGTAAAAAGGGAAAG 60.183 38.462 0.00 0.00 0.00 2.62
4714 8707 8.138712 AGCCTGTCGAATTCTAACTAGATTAAG 58.861 37.037 3.52 0.00 31.40 1.85
4717 8712 6.472686 AGCCTGTCGAATTCTAACTAGATT 57.527 37.500 3.52 0.00 31.40 2.40
4741 8736 7.807977 AATATGTAAACGAGATGGCAGAAAT 57.192 32.000 0.00 0.00 0.00 2.17
4789 8784 5.620206 AGTTGAACATTCATGAGGTACACA 58.380 37.500 0.00 0.00 37.00 3.72
4790 8785 5.934625 AGAGTTGAACATTCATGAGGTACAC 59.065 40.000 0.00 0.00 37.00 2.90
4899 8896 5.393027 GGTTAGATGGCATACACCAAACAAG 60.393 44.000 14.42 0.00 44.65 3.16
4922 8919 4.970662 AACAAATTCATCATCGGTCAGG 57.029 40.909 0.00 0.00 0.00 3.86
4953 8950 6.579666 TGCCATTCCAGCTAATCATATTTC 57.420 37.500 0.00 0.00 0.00 2.17
4977 8974 9.349713 GTTGGTTATTATATCAGGAATCAACCA 57.650 33.333 0.00 0.00 40.69 3.67
4978 8975 9.349713 TGTTGGTTATTATATCAGGAATCAACC 57.650 33.333 6.60 0.00 34.76 3.77
5014 9011 7.549839 TGATCATGGTGAAAATTCCTCAAATC 58.450 34.615 0.00 0.00 0.00 2.17
5024 9021 7.307131 AGGAAGTTTTGATCATGGTGAAAAT 57.693 32.000 6.61 0.00 0.00 1.82
5047 9045 6.264832 TCTGTTTTGCTGTGTCATAAACAAG 58.735 36.000 0.00 0.00 40.31 3.16
5086 9084 6.759827 TGGTTTCTAGTAACTGTTTGAGACAC 59.240 38.462 11.46 3.14 33.82 3.67
5087 9085 6.880484 TGGTTTCTAGTAACTGTTTGAGACA 58.120 36.000 11.46 0.00 36.65 3.41
5088 9086 7.208080 TCTGGTTTCTAGTAACTGTTTGAGAC 58.792 38.462 11.46 0.00 0.00 3.36
5089 9087 7.069578 ACTCTGGTTTCTAGTAACTGTTTGAGA 59.930 37.037 11.46 0.00 0.00 3.27
5090 9088 7.210873 ACTCTGGTTTCTAGTAACTGTTTGAG 58.789 38.462 11.46 12.46 0.00 3.02
5091 9089 7.120923 ACTCTGGTTTCTAGTAACTGTTTGA 57.879 36.000 11.46 3.74 0.00 2.69
5092 9090 7.494625 TGAACTCTGGTTTCTAGTAACTGTTTG 59.505 37.037 11.46 2.96 35.58 2.93
5093 9091 7.562135 TGAACTCTGGTTTCTAGTAACTGTTT 58.438 34.615 11.46 4.59 35.58 2.83
5094 9092 7.120923 TGAACTCTGGTTTCTAGTAACTGTT 57.879 36.000 11.46 10.84 35.58 3.16
5186 9197 1.153449 GGTCGACGATGCCATGGAA 60.153 57.895 18.40 4.87 0.00 3.53
5214 9225 1.280457 GACAAGGGGACTGATGAGGT 58.720 55.000 0.00 0.00 42.68 3.85
5237 9248 4.785346 AGTGGATGATGCTATGGAAACT 57.215 40.909 0.00 0.00 0.00 2.66
5255 9266 4.118410 CCGATGAGGAAGATTCTGAAGTG 58.882 47.826 0.00 0.00 45.00 3.16
5360 9371 1.196581 TGCGTGCATGTGTGTGTAATC 59.803 47.619 7.93 0.00 0.00 1.75
5384 9403 2.430465 CTGTCTACCTGCATTGCAACT 58.570 47.619 13.18 3.01 38.41 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.