Multiple sequence alignment - TraesCS5D01G015300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G015300 chr5D 100.000 2906 0 0 1 2906 8643398 8640493 0.000000e+00 5367.0
1 TraesCS5D01G015300 chr5A 90.856 1542 67 31 750 2241 6799400 6797883 0.000000e+00 1999.0
2 TraesCS5D01G015300 chr5A 84.825 257 14 14 2247 2484 6797795 6797545 4.840000e-58 235.0
3 TraesCS5D01G015300 chr5A 98.214 56 1 0 2601 2656 6797386 6797331 6.630000e-17 99.0
4 TraesCS5D01G015300 chr5B 90.596 1393 56 25 865 2200 8946210 8944836 0.000000e+00 1777.0
5 TraesCS5D01G015300 chr5B 90.309 485 30 9 1 468 8946690 8946206 1.140000e-173 619.0
6 TraesCS5D01G015300 chr5B 81.743 241 20 12 2428 2660 8944640 8944416 2.300000e-41 180.0
7 TraesCS5D01G015300 chr5B 89.796 98 4 2 2334 2431 8937981 8937890 1.410000e-23 121.0
8 TraesCS5D01G015300 chr1D 98.879 446 4 1 907 1351 453605987 453606432 0.000000e+00 795.0
9 TraesCS5D01G015300 chr4D 98.427 445 7 0 907 1351 475746404 475745960 0.000000e+00 784.0
10 TraesCS5D01G015300 chr7D 97.849 279 6 0 1073 1351 634158824 634158546 1.570000e-132 483.0
11 TraesCS5D01G015300 chr1B 87.339 387 48 1 1443 1829 30677549 30677934 2.660000e-120 442.0
12 TraesCS5D01G015300 chr2B 86.923 390 44 6 1443 1829 676736489 676736874 5.750000e-117 431.0
13 TraesCS5D01G015300 chr2B 83.058 484 35 25 1704 2166 751313801 751314258 2.100000e-106 396.0
14 TraesCS5D01G015300 chr2B 85.714 196 8 4 2248 2431 751314427 751314614 3.820000e-44 189.0
15 TraesCS5D01G015300 chr2B 95.588 68 2 1 2428 2495 751314654 751314720 1.100000e-19 108.0
16 TraesCS5D01G015300 chr1A 86.189 391 49 2 1443 1829 343757022 343756633 4.480000e-113 418.0
17 TraesCS5D01G015300 chr3D 80.882 136 3 9 1979 2113 253665625 253665738 5.160000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G015300 chr5D 8640493 8643398 2905 True 5367.000000 5367 100.000000 1 2906 1 chr5D.!!$R1 2905
1 TraesCS5D01G015300 chr5A 6797331 6799400 2069 True 777.666667 1999 91.298333 750 2656 3 chr5A.!!$R1 1906
2 TraesCS5D01G015300 chr5B 8944416 8946690 2274 True 858.666667 1777 87.549333 1 2660 3 chr5B.!!$R2 2659
3 TraesCS5D01G015300 chr2B 751313801 751314720 919 False 231.000000 396 88.120000 1704 2495 3 chr2B.!!$F2 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 674 0.032952 TGAACCTCGAAACACCTCGG 59.967 55.0 0.0 0.0 39.35 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2222 2349 0.31812 CCCCCTTGCAATGAACACAC 59.682 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.302949 CGGATCCCCCAAAGCAAGA 59.697 57.895 6.06 0.00 34.14 3.02
76 77 1.821332 GCCGCTCCTTGGAGAATGG 60.821 63.158 19.85 16.79 0.00 3.16
77 78 1.821332 CCGCTCCTTGGAGAATGGC 60.821 63.158 19.85 4.49 0.00 4.40
78 79 1.821332 CGCTCCTTGGAGAATGGCC 60.821 63.158 19.85 0.00 0.00 5.36
79 80 1.304282 GCTCCTTGGAGAATGGCCA 59.696 57.895 19.85 8.56 0.00 5.36
80 81 1.034292 GCTCCTTGGAGAATGGCCAC 61.034 60.000 19.85 0.00 34.56 5.01
105 114 5.183904 CCTAACTTTAGGCAAGCACATTTCT 59.816 40.000 2.02 0.00 43.43 2.52
124 133 4.532314 TCTAGACCTTTTCCCTTTCGTC 57.468 45.455 0.00 0.00 0.00 4.20
131 140 5.123936 ACCTTTTCCCTTTCGTCTATATGC 58.876 41.667 0.00 0.00 0.00 3.14
150 160 4.640771 TGCTGATAAAGACCTTTGTCCT 57.359 40.909 13.98 0.00 42.81 3.85
192 202 5.065859 TGTTATCATGCGTACCCATTTTCTG 59.934 40.000 0.00 0.00 0.00 3.02
205 215 4.070630 CATTTTCTGGAGCACCCAAAAA 57.929 40.909 10.01 10.33 46.07 1.94
221 231 7.970614 GCACCCAAAAAGATACATCTTCTAAAG 59.029 37.037 4.98 0.00 45.83 1.85
372 385 1.275573 ACCCTACAAGGCTTCGAACTC 59.724 52.381 0.00 0.00 32.73 3.01
376 389 4.425520 CCTACAAGGCTTCGAACTCTAAG 58.574 47.826 0.00 0.00 0.00 2.18
377 390 2.689646 ACAAGGCTTCGAACTCTAAGC 58.310 47.619 0.00 7.29 45.88 3.09
380 393 2.666989 GCTTCGAACTCTAAGCCCG 58.333 57.895 0.00 0.00 41.80 6.13
382 395 0.806492 CTTCGAACTCTAAGCCCGGC 60.806 60.000 0.00 0.00 0.00 6.13
384 397 1.227002 CGAACTCTAAGCCCGGCTC 60.227 63.158 13.72 0.00 38.25 4.70
385 398 1.898154 GAACTCTAAGCCCGGCTCA 59.102 57.895 13.72 0.00 38.25 4.26
386 399 0.466124 GAACTCTAAGCCCGGCTCAT 59.534 55.000 13.72 0.00 38.25 2.90
395 412 1.904771 CCCGGCTCATACTGTCCAA 59.095 57.895 0.00 0.00 0.00 3.53
406 423 1.062488 ACTGTCCAAGGTCCAAGCCT 61.062 55.000 0.00 0.00 41.41 4.58
417 434 2.037251 GGTCCAAGCCTGCTATAATCGA 59.963 50.000 0.00 0.00 0.00 3.59
419 436 4.127171 GTCCAAGCCTGCTATAATCGAAA 58.873 43.478 0.00 0.00 0.00 3.46
420 437 4.574828 GTCCAAGCCTGCTATAATCGAAAA 59.425 41.667 0.00 0.00 0.00 2.29
429 446 9.516314 GCCTGCTATAATCGAAAATTTTAAACT 57.484 29.630 2.75 0.00 0.00 2.66
463 481 6.685403 GCAAAATATGACATGAAGCAATTTGC 59.315 34.615 13.55 13.55 45.46 3.68
474 492 0.587768 GCAATTTGCAACACCAAGGC 59.412 50.000 16.35 0.00 44.26 4.35
475 493 1.950828 CAATTTGCAACACCAAGGCA 58.049 45.000 0.00 0.00 35.41 4.75
476 494 2.286872 CAATTTGCAACACCAAGGCAA 58.713 42.857 0.00 0.00 44.97 4.52
477 495 2.879646 CAATTTGCAACACCAAGGCAAT 59.120 40.909 0.00 0.00 45.81 3.56
478 496 2.706339 TTTGCAACACCAAGGCAATT 57.294 40.000 0.00 0.00 45.81 2.32
479 497 2.706339 TTGCAACACCAAGGCAATTT 57.294 40.000 0.00 0.00 42.12 1.82
480 498 1.950828 TGCAACACCAAGGCAATTTG 58.049 45.000 0.00 0.00 34.05 2.32
492 510 6.874288 CAAGGCAATTTGGATTTTGGTAAA 57.126 33.333 0.00 0.00 0.00 2.01
493 511 7.451501 CAAGGCAATTTGGATTTTGGTAAAT 57.548 32.000 0.00 0.00 36.68 1.40
494 512 7.884257 CAAGGCAATTTGGATTTTGGTAAATT 58.116 30.769 0.00 0.00 34.16 1.82
495 513 7.451501 AGGCAATTTGGATTTTGGTAAATTG 57.548 32.000 13.83 13.83 45.92 2.32
496 514 7.230027 AGGCAATTTGGATTTTGGTAAATTGA 58.770 30.769 19.53 0.00 45.99 2.57
497 515 7.723172 AGGCAATTTGGATTTTGGTAAATTGAA 59.277 29.630 19.53 0.00 45.99 2.69
498 516 8.022550 GGCAATTTGGATTTTGGTAAATTGAAG 58.977 33.333 19.53 1.08 45.99 3.02
499 517 8.022550 GCAATTTGGATTTTGGTAAATTGAAGG 58.977 33.333 19.53 0.81 45.99 3.46
500 518 7.686438 ATTTGGATTTTGGTAAATTGAAGGC 57.314 32.000 0.00 0.00 34.16 4.35
501 519 5.815233 TGGATTTTGGTAAATTGAAGGCA 57.185 34.783 0.00 0.00 34.16 4.75
502 520 5.546526 TGGATTTTGGTAAATTGAAGGCAC 58.453 37.500 0.00 0.00 34.16 5.01
503 521 4.935205 GGATTTTGGTAAATTGAAGGCACC 59.065 41.667 0.00 0.00 34.16 5.01
504 522 5.512232 GGATTTTGGTAAATTGAAGGCACCA 60.512 40.000 0.00 0.00 37.50 4.17
505 523 4.599047 TTTGGTAAATTGAAGGCACCAG 57.401 40.909 0.00 0.00 40.23 4.00
506 524 2.524306 TGGTAAATTGAAGGCACCAGG 58.476 47.619 0.00 0.00 34.40 4.45
507 525 2.109128 TGGTAAATTGAAGGCACCAGGA 59.891 45.455 0.00 0.00 34.40 3.86
508 526 2.492088 GGTAAATTGAAGGCACCAGGAC 59.508 50.000 0.00 0.00 0.00 3.85
509 527 2.380064 AAATTGAAGGCACCAGGACA 57.620 45.000 0.00 0.00 0.00 4.02
510 528 1.620822 AATTGAAGGCACCAGGACAC 58.379 50.000 0.00 0.00 0.00 3.67
511 529 0.773644 ATTGAAGGCACCAGGACACT 59.226 50.000 0.00 0.00 0.00 3.55
512 530 1.429930 TTGAAGGCACCAGGACACTA 58.570 50.000 0.00 0.00 0.00 2.74
513 531 1.429930 TGAAGGCACCAGGACACTAA 58.570 50.000 0.00 0.00 0.00 2.24
514 532 1.347707 TGAAGGCACCAGGACACTAAG 59.652 52.381 0.00 0.00 0.00 2.18
515 533 1.348036 GAAGGCACCAGGACACTAAGT 59.652 52.381 0.00 0.00 0.00 2.24
516 534 2.320681 AGGCACCAGGACACTAAGTA 57.679 50.000 0.00 0.00 0.00 2.24
517 535 2.834113 AGGCACCAGGACACTAAGTAT 58.166 47.619 0.00 0.00 0.00 2.12
518 536 3.182152 AGGCACCAGGACACTAAGTATT 58.818 45.455 0.00 0.00 0.00 1.89
519 537 3.587506 AGGCACCAGGACACTAAGTATTT 59.412 43.478 0.00 0.00 0.00 1.40
520 538 3.939592 GGCACCAGGACACTAAGTATTTC 59.060 47.826 0.00 0.00 0.00 2.17
521 539 3.617263 GCACCAGGACACTAAGTATTTCG 59.383 47.826 0.00 0.00 0.00 3.46
522 540 4.817517 CACCAGGACACTAAGTATTTCGT 58.182 43.478 0.00 0.00 0.00 3.85
523 541 5.235516 CACCAGGACACTAAGTATTTCGTT 58.764 41.667 0.00 0.00 0.00 3.85
524 542 5.699458 CACCAGGACACTAAGTATTTCGTTT 59.301 40.000 0.00 0.00 0.00 3.60
525 543 6.869913 CACCAGGACACTAAGTATTTCGTTTA 59.130 38.462 0.00 0.00 0.00 2.01
526 544 7.063074 CACCAGGACACTAAGTATTTCGTTTAG 59.937 40.741 0.00 0.00 0.00 1.85
527 545 7.039504 ACCAGGACACTAAGTATTTCGTTTAGA 60.040 37.037 0.00 0.00 0.00 2.10
528 546 7.488471 CCAGGACACTAAGTATTTCGTTTAGAG 59.512 40.741 0.00 0.00 0.00 2.43
529 547 8.242053 CAGGACACTAAGTATTTCGTTTAGAGA 58.758 37.037 0.00 0.00 0.00 3.10
530 548 8.242739 AGGACACTAAGTATTTCGTTTAGAGAC 58.757 37.037 0.00 0.00 0.00 3.36
531 549 8.025445 GGACACTAAGTATTTCGTTTAGAGACA 58.975 37.037 0.00 0.00 0.00 3.41
532 550 9.403110 GACACTAAGTATTTCGTTTAGAGACAA 57.597 33.333 0.00 0.00 0.00 3.18
533 551 9.189723 ACACTAAGTATTTCGTTTAGAGACAAC 57.810 33.333 0.00 0.00 0.00 3.32
534 552 9.408069 CACTAAGTATTTCGTTTAGAGACAACT 57.592 33.333 0.00 0.00 0.00 3.16
535 553 9.408069 ACTAAGTATTTCGTTTAGAGACAACTG 57.592 33.333 0.00 0.00 0.00 3.16
536 554 9.622004 CTAAGTATTTCGTTTAGAGACAACTGA 57.378 33.333 0.00 0.00 0.00 3.41
537 555 7.870588 AGTATTTCGTTTAGAGACAACTGAC 57.129 36.000 0.00 0.00 0.00 3.51
538 556 6.867293 AGTATTTCGTTTAGAGACAACTGACC 59.133 38.462 0.00 0.00 0.00 4.02
539 557 4.659111 TTCGTTTAGAGACAACTGACCA 57.341 40.909 0.00 0.00 0.00 4.02
540 558 3.973657 TCGTTTAGAGACAACTGACCAC 58.026 45.455 0.00 0.00 0.00 4.16
541 559 3.057734 CGTTTAGAGACAACTGACCACC 58.942 50.000 0.00 0.00 0.00 4.61
542 560 3.057734 GTTTAGAGACAACTGACCACCG 58.942 50.000 0.00 0.00 0.00 4.94
543 561 2.281539 TAGAGACAACTGACCACCGA 57.718 50.000 0.00 0.00 0.00 4.69
544 562 0.674534 AGAGACAACTGACCACCGAC 59.325 55.000 0.00 0.00 0.00 4.79
545 563 0.319641 GAGACAACTGACCACCGACC 60.320 60.000 0.00 0.00 0.00 4.79
546 564 1.046472 AGACAACTGACCACCGACCA 61.046 55.000 0.00 0.00 0.00 4.02
547 565 0.179067 GACAACTGACCACCGACCAA 60.179 55.000 0.00 0.00 0.00 3.67
548 566 0.179056 ACAACTGACCACCGACCAAG 60.179 55.000 0.00 0.00 0.00 3.61
549 567 1.227853 AACTGACCACCGACCAAGC 60.228 57.895 0.00 0.00 0.00 4.01
550 568 1.978455 AACTGACCACCGACCAAGCA 61.978 55.000 0.00 0.00 0.00 3.91
551 569 1.961277 CTGACCACCGACCAAGCAC 60.961 63.158 0.00 0.00 0.00 4.40
552 570 2.383245 CTGACCACCGACCAAGCACT 62.383 60.000 0.00 0.00 0.00 4.40
553 571 1.961277 GACCACCGACCAAGCACTG 60.961 63.158 0.00 0.00 0.00 3.66
554 572 2.377628 GACCACCGACCAAGCACTGA 62.378 60.000 0.00 0.00 0.00 3.41
555 573 1.669115 CCACCGACCAAGCACTGAG 60.669 63.158 0.00 0.00 0.00 3.35
556 574 1.069765 CACCGACCAAGCACTGAGT 59.930 57.895 0.00 0.00 0.00 3.41
557 575 0.532862 CACCGACCAAGCACTGAGTT 60.533 55.000 0.00 0.00 0.00 3.01
558 576 0.180406 ACCGACCAAGCACTGAGTTT 59.820 50.000 0.00 0.00 0.00 2.66
559 577 1.308998 CCGACCAAGCACTGAGTTTT 58.691 50.000 0.00 0.00 0.00 2.43
560 578 1.002468 CCGACCAAGCACTGAGTTTTG 60.002 52.381 0.84 0.84 0.00 2.44
561 579 1.597937 CGACCAAGCACTGAGTTTTGC 60.598 52.381 2.05 0.00 39.16 3.68
562 580 0.381801 ACCAAGCACTGAGTTTTGCG 59.618 50.000 2.05 0.00 43.87 4.85
563 581 0.936297 CCAAGCACTGAGTTTTGCGC 60.936 55.000 0.00 0.00 43.87 6.09
564 582 0.936297 CAAGCACTGAGTTTTGCGCC 60.936 55.000 4.18 0.00 43.87 6.53
565 583 1.383456 AAGCACTGAGTTTTGCGCCA 61.383 50.000 4.18 0.00 43.87 5.69
566 584 1.174712 AGCACTGAGTTTTGCGCCAT 61.175 50.000 4.18 0.00 43.87 4.40
567 585 0.318955 GCACTGAGTTTTGCGCCATT 60.319 50.000 4.18 0.00 0.00 3.16
568 586 1.869342 GCACTGAGTTTTGCGCCATTT 60.869 47.619 4.18 0.00 0.00 2.32
569 587 2.606795 GCACTGAGTTTTGCGCCATTTA 60.607 45.455 4.18 0.00 0.00 1.40
570 588 2.979813 CACTGAGTTTTGCGCCATTTAC 59.020 45.455 4.18 0.00 0.00 2.01
571 589 2.621055 ACTGAGTTTTGCGCCATTTACA 59.379 40.909 4.18 0.00 0.00 2.41
572 590 3.255642 ACTGAGTTTTGCGCCATTTACAT 59.744 39.130 4.18 0.00 0.00 2.29
573 591 3.832276 TGAGTTTTGCGCCATTTACATC 58.168 40.909 4.18 0.00 0.00 3.06
574 592 3.505680 TGAGTTTTGCGCCATTTACATCT 59.494 39.130 4.18 0.00 0.00 2.90
575 593 4.022416 TGAGTTTTGCGCCATTTACATCTT 60.022 37.500 4.18 0.00 0.00 2.40
576 594 4.236935 AGTTTTGCGCCATTTACATCTTG 58.763 39.130 4.18 0.00 0.00 3.02
577 595 3.932545 TTTGCGCCATTTACATCTTGT 57.067 38.095 4.18 0.00 0.00 3.16
578 596 2.917701 TGCGCCATTTACATCTTGTG 57.082 45.000 4.18 0.00 0.00 3.33
579 597 1.472082 TGCGCCATTTACATCTTGTGG 59.528 47.619 4.18 0.00 0.00 4.17
584 602 3.956233 CCATTTACATCTTGTGGCATCG 58.044 45.455 0.00 0.00 0.00 3.84
585 603 3.627123 CCATTTACATCTTGTGGCATCGA 59.373 43.478 0.00 0.00 0.00 3.59
586 604 4.096231 CCATTTACATCTTGTGGCATCGAA 59.904 41.667 0.00 0.00 0.00 3.71
587 605 5.392919 CCATTTACATCTTGTGGCATCGAAA 60.393 40.000 0.00 0.00 0.00 3.46
588 606 5.895636 TTTACATCTTGTGGCATCGAAAT 57.104 34.783 0.00 0.00 0.00 2.17
589 607 6.993786 TTTACATCTTGTGGCATCGAAATA 57.006 33.333 0.00 0.00 0.00 1.40
590 608 7.566760 TTTACATCTTGTGGCATCGAAATAT 57.433 32.000 0.00 0.00 0.00 1.28
591 609 5.428496 ACATCTTGTGGCATCGAAATATG 57.572 39.130 0.00 0.00 0.00 1.78
592 610 5.125356 ACATCTTGTGGCATCGAAATATGA 58.875 37.500 0.00 0.00 0.00 2.15
593 611 5.766670 ACATCTTGTGGCATCGAAATATGAT 59.233 36.000 0.00 0.00 0.00 2.45
594 612 6.263842 ACATCTTGTGGCATCGAAATATGATT 59.736 34.615 0.00 0.00 0.00 2.57
595 613 6.698008 TCTTGTGGCATCGAAATATGATTT 57.302 33.333 0.00 0.00 0.00 2.17
596 614 6.728200 TCTTGTGGCATCGAAATATGATTTC 58.272 36.000 0.00 2.45 0.00 2.17
597 615 6.318396 TCTTGTGGCATCGAAATATGATTTCA 59.682 34.615 11.40 1.31 0.00 2.69
598 616 5.820131 TGTGGCATCGAAATATGATTTCAC 58.180 37.500 11.40 3.53 31.86 3.18
599 617 5.356470 TGTGGCATCGAAATATGATTTCACA 59.644 36.000 11.40 5.61 35.58 3.58
600 618 6.039605 TGTGGCATCGAAATATGATTTCACAT 59.960 34.615 11.40 0.00 34.28 3.21
601 619 6.361481 GTGGCATCGAAATATGATTTCACATG 59.639 38.462 11.40 11.99 31.70 3.21
602 620 6.039605 TGGCATCGAAATATGATTTCACATGT 59.960 34.615 11.40 0.00 0.00 3.21
603 621 6.919662 GGCATCGAAATATGATTTCACATGTT 59.080 34.615 11.40 0.00 34.14 2.71
604 622 7.436080 GGCATCGAAATATGATTTCACATGTTT 59.564 33.333 11.40 0.00 41.62 2.83
605 623 8.474577 GCATCGAAATATGATTTCACATGTTTC 58.525 33.333 15.55 15.55 45.66 2.78
606 624 8.961092 CATCGAAATATGATTTCACATGTTTCC 58.039 33.333 17.93 7.32 46.00 3.13
607 625 8.049655 TCGAAATATGATTTCACATGTTTCCA 57.950 30.769 17.93 8.67 46.00 3.53
608 626 8.685427 TCGAAATATGATTTCACATGTTTCCAT 58.315 29.630 17.93 0.00 46.00 3.41
609 627 8.961092 CGAAATATGATTTCACATGTTTCCATC 58.039 33.333 17.93 0.00 46.00 3.51
610 628 8.861033 AAATATGATTTCACATGTTTCCATCG 57.139 30.769 0.00 0.00 37.12 3.84
611 629 7.806409 ATATGATTTCACATGTTTCCATCGA 57.194 32.000 0.00 0.00 0.00 3.59
612 630 6.704289 ATGATTTCACATGTTTCCATCGAT 57.296 33.333 0.00 0.00 0.00 3.59
613 631 7.806409 ATGATTTCACATGTTTCCATCGATA 57.194 32.000 0.00 0.00 0.00 2.92
614 632 7.250445 TGATTTCACATGTTTCCATCGATAG 57.750 36.000 0.00 0.00 0.00 2.08
615 633 5.484173 TTTCACATGTTTCCATCGATAGC 57.516 39.130 0.00 0.00 0.00 2.97
616 634 3.123050 TCACATGTTTCCATCGATAGCG 58.877 45.455 0.00 0.00 39.35 4.26
627 645 2.527442 TCGATAGCGATGCGACTATG 57.473 50.000 0.00 0.00 42.51 2.23
628 646 2.073816 TCGATAGCGATGCGACTATGA 58.926 47.619 0.00 0.00 42.51 2.15
629 647 2.678336 TCGATAGCGATGCGACTATGAT 59.322 45.455 0.00 0.00 42.51 2.45
630 648 2.780557 CGATAGCGATGCGACTATGATG 59.219 50.000 0.00 0.00 40.82 3.07
631 649 2.636768 TAGCGATGCGACTATGATGG 57.363 50.000 0.00 0.00 0.00 3.51
632 650 0.668706 AGCGATGCGACTATGATGGC 60.669 55.000 0.00 0.00 0.00 4.40
633 651 0.668706 GCGATGCGACTATGATGGCT 60.669 55.000 0.00 0.00 0.00 4.75
634 652 1.344458 CGATGCGACTATGATGGCTC 58.656 55.000 0.00 0.00 0.00 4.70
635 653 1.719600 GATGCGACTATGATGGCTCC 58.280 55.000 0.00 0.00 0.00 4.70
636 654 1.001293 GATGCGACTATGATGGCTCCA 59.999 52.381 0.00 0.00 0.00 3.86
637 655 1.051008 TGCGACTATGATGGCTCCAT 58.949 50.000 0.14 0.14 39.69 3.41
638 656 1.270465 TGCGACTATGATGGCTCCATG 60.270 52.381 6.07 0.00 36.70 3.66
639 657 1.001293 GCGACTATGATGGCTCCATGA 59.999 52.381 6.07 0.00 36.70 3.07
640 658 2.548707 GCGACTATGATGGCTCCATGAA 60.549 50.000 6.07 0.00 36.70 2.57
641 659 3.062763 CGACTATGATGGCTCCATGAAC 58.937 50.000 6.07 0.00 36.70 3.18
642 660 3.406764 GACTATGATGGCTCCATGAACC 58.593 50.000 6.07 0.00 36.70 3.62
643 661 3.051581 ACTATGATGGCTCCATGAACCT 58.948 45.455 6.07 0.00 36.70 3.50
644 662 2.653234 ATGATGGCTCCATGAACCTC 57.347 50.000 6.07 0.00 36.70 3.85
645 663 0.178767 TGATGGCTCCATGAACCTCG 59.821 55.000 6.07 0.00 36.70 4.63
646 664 0.465705 GATGGCTCCATGAACCTCGA 59.534 55.000 6.07 0.00 36.70 4.04
647 665 0.911769 ATGGCTCCATGAACCTCGAA 59.088 50.000 0.00 0.00 35.03 3.71
648 666 0.690192 TGGCTCCATGAACCTCGAAA 59.310 50.000 0.00 0.00 0.00 3.46
649 667 1.087501 GGCTCCATGAACCTCGAAAC 58.912 55.000 0.00 0.00 0.00 2.78
650 668 1.610624 GGCTCCATGAACCTCGAAACA 60.611 52.381 0.00 0.00 0.00 2.83
651 669 1.464997 GCTCCATGAACCTCGAAACAC 59.535 52.381 0.00 0.00 0.00 3.32
652 670 2.076863 CTCCATGAACCTCGAAACACC 58.923 52.381 0.00 0.00 0.00 4.16
653 671 1.697432 TCCATGAACCTCGAAACACCT 59.303 47.619 0.00 0.00 0.00 4.00
654 672 2.076863 CCATGAACCTCGAAACACCTC 58.923 52.381 0.00 0.00 0.00 3.85
655 673 1.726791 CATGAACCTCGAAACACCTCG 59.273 52.381 0.00 0.00 40.25 4.63
656 674 0.032952 TGAACCTCGAAACACCTCGG 59.967 55.000 0.00 0.00 39.35 4.63
657 675 1.289800 GAACCTCGAAACACCTCGGC 61.290 60.000 0.00 0.00 39.35 5.54
658 676 1.755393 AACCTCGAAACACCTCGGCT 61.755 55.000 0.00 0.00 39.35 5.52
659 677 1.446272 CCTCGAAACACCTCGGCTC 60.446 63.158 0.00 0.00 39.35 4.70
660 678 1.446272 CTCGAAACACCTCGGCTCC 60.446 63.158 0.00 0.00 39.35 4.70
661 679 2.809601 CGAAACACCTCGGCTCCG 60.810 66.667 1.14 1.14 41.35 4.63
662 680 2.434359 GAAACACCTCGGCTCCGG 60.434 66.667 8.59 0.00 40.25 5.14
663 681 4.699522 AAACACCTCGGCTCCGGC 62.700 66.667 8.59 0.00 40.25 6.13
666 684 4.473520 CACCTCGGCTCCGGCATT 62.474 66.667 8.59 0.00 40.87 3.56
667 685 4.162690 ACCTCGGCTCCGGCATTC 62.163 66.667 8.59 0.00 40.87 2.67
668 686 4.161295 CCTCGGCTCCGGCATTCA 62.161 66.667 8.59 0.00 40.87 2.57
669 687 2.125147 CTCGGCTCCGGCATTCAA 60.125 61.111 8.59 0.00 40.87 2.69
670 688 2.435938 TCGGCTCCGGCATTCAAC 60.436 61.111 8.59 0.00 40.87 3.18
671 689 3.508840 CGGCTCCGGCATTCAACC 61.509 66.667 0.00 0.00 40.87 3.77
672 690 3.140814 GGCTCCGGCATTCAACCC 61.141 66.667 0.00 0.00 40.87 4.11
673 691 2.044946 GCTCCGGCATTCAACCCT 60.045 61.111 0.00 0.00 38.54 4.34
674 692 1.678970 GCTCCGGCATTCAACCCTT 60.679 57.895 0.00 0.00 38.54 3.95
675 693 1.657751 GCTCCGGCATTCAACCCTTC 61.658 60.000 0.00 0.00 38.54 3.46
676 694 0.035056 CTCCGGCATTCAACCCTTCT 60.035 55.000 0.00 0.00 0.00 2.85
677 695 0.035439 TCCGGCATTCAACCCTTCTC 60.035 55.000 0.00 0.00 0.00 2.87
678 696 1.369091 CCGGCATTCAACCCTTCTCG 61.369 60.000 0.00 0.00 0.00 4.04
679 697 1.369091 CGGCATTCAACCCTTCTCGG 61.369 60.000 0.00 0.00 0.00 4.63
680 698 1.657751 GGCATTCAACCCTTCTCGGC 61.658 60.000 0.00 0.00 0.00 5.54
681 699 1.982073 GCATTCAACCCTTCTCGGCG 61.982 60.000 0.00 0.00 0.00 6.46
682 700 0.673644 CATTCAACCCTTCTCGGCGT 60.674 55.000 6.85 0.00 0.00 5.68
683 701 0.673644 ATTCAACCCTTCTCGGCGTG 60.674 55.000 6.85 4.24 0.00 5.34
684 702 2.030562 CAACCCTTCTCGGCGTGT 59.969 61.111 6.85 0.00 0.00 4.49
685 703 2.030562 AACCCTTCTCGGCGTGTG 59.969 61.111 6.85 2.36 0.00 3.82
686 704 2.803817 AACCCTTCTCGGCGTGTGT 61.804 57.895 6.85 0.00 0.00 3.72
687 705 2.738521 CCCTTCTCGGCGTGTGTG 60.739 66.667 6.85 0.00 0.00 3.82
688 706 2.029073 CCTTCTCGGCGTGTGTGT 59.971 61.111 6.85 0.00 0.00 3.72
689 707 2.310233 CCTTCTCGGCGTGTGTGTG 61.310 63.158 6.85 0.00 0.00 3.82
690 708 1.591594 CTTCTCGGCGTGTGTGTGT 60.592 57.895 6.85 0.00 0.00 3.72
691 709 1.821241 CTTCTCGGCGTGTGTGTGTG 61.821 60.000 6.85 0.00 0.00 3.82
692 710 2.566057 TTCTCGGCGTGTGTGTGTGT 62.566 55.000 6.85 0.00 0.00 3.72
693 711 2.870341 CTCGGCGTGTGTGTGTGTG 61.870 63.158 6.85 0.00 0.00 3.82
694 712 3.192230 CGGCGTGTGTGTGTGTGT 61.192 61.111 0.00 0.00 0.00 3.72
695 713 2.403186 GGCGTGTGTGTGTGTGTG 59.597 61.111 0.00 0.00 0.00 3.82
696 714 2.395360 GGCGTGTGTGTGTGTGTGT 61.395 57.895 0.00 0.00 0.00 3.72
697 715 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
698 716 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
699 717 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
700 718 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
701 719 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
702 720 1.533299 TGTGTGTGTGTGTGTGTGTTC 59.467 47.619 0.00 0.00 0.00 3.18
703 721 0.793250 TGTGTGTGTGTGTGTGTTCG 59.207 50.000 0.00 0.00 0.00 3.95
704 722 0.520412 GTGTGTGTGTGTGTGTTCGC 60.520 55.000 0.00 0.00 0.00 4.70
705 723 0.951040 TGTGTGTGTGTGTGTTCGCA 60.951 50.000 0.00 0.00 0.00 5.10
723 741 9.284594 GTGTTCGCACATGTTATATAAATTTGT 57.715 29.630 0.00 0.00 46.85 2.83
742 760 6.467723 TTTGTACTCAGATCTTCTTTTCGC 57.532 37.500 0.00 0.00 0.00 4.70
743 761 5.134202 TGTACTCAGATCTTCTTTTCGCA 57.866 39.130 0.00 0.00 0.00 5.10
744 762 4.923871 TGTACTCAGATCTTCTTTTCGCAC 59.076 41.667 0.00 0.00 0.00 5.34
745 763 3.330267 ACTCAGATCTTCTTTTCGCACC 58.670 45.455 0.00 0.00 0.00 5.01
746 764 3.244215 ACTCAGATCTTCTTTTCGCACCA 60.244 43.478 0.00 0.00 0.00 4.17
747 765 3.738982 TCAGATCTTCTTTTCGCACCAA 58.261 40.909 0.00 0.00 0.00 3.67
748 766 3.498397 TCAGATCTTCTTTTCGCACCAAC 59.502 43.478 0.00 0.00 0.00 3.77
749 767 2.480419 AGATCTTCTTTTCGCACCAACG 59.520 45.455 0.00 0.00 0.00 4.10
750 768 1.942677 TCTTCTTTTCGCACCAACGA 58.057 45.000 0.00 0.00 41.04 3.85
751 769 1.864711 TCTTCTTTTCGCACCAACGAG 59.135 47.619 0.00 0.00 44.00 4.18
752 770 1.597663 CTTCTTTTCGCACCAACGAGT 59.402 47.619 0.00 0.00 44.00 4.18
753 771 0.934496 TCTTTTCGCACCAACGAGTG 59.066 50.000 0.00 0.00 44.00 3.51
754 772 0.934496 CTTTTCGCACCAACGAGTGA 59.066 50.000 8.75 0.00 44.00 3.41
755 773 0.653636 TTTTCGCACCAACGAGTGAC 59.346 50.000 8.75 1.12 44.00 3.67
756 774 0.460459 TTTCGCACCAACGAGTGACA 60.460 50.000 8.75 0.00 44.00 3.58
757 775 0.249699 TTCGCACCAACGAGTGACAT 60.250 50.000 8.75 0.00 44.00 3.06
758 776 0.249699 TCGCACCAACGAGTGACATT 60.250 50.000 8.75 0.00 40.34 2.71
759 777 1.000052 TCGCACCAACGAGTGACATTA 60.000 47.619 8.75 0.00 40.34 1.90
760 778 1.999735 CGCACCAACGAGTGACATTAT 59.000 47.619 8.75 0.00 40.34 1.28
761 779 2.222796 CGCACCAACGAGTGACATTATG 60.223 50.000 8.75 0.00 40.34 1.90
828 861 3.324713 GCTGGGCCAGGTAGATGT 58.675 61.111 33.43 0.00 31.21 3.06
829 862 1.153086 GCTGGGCCAGGTAGATGTG 60.153 63.158 33.43 7.49 31.21 3.21
830 863 1.153086 CTGGGCCAGGTAGATGTGC 60.153 63.158 26.34 0.00 0.00 4.57
831 864 2.193248 GGGCCAGGTAGATGTGCC 59.807 66.667 4.39 0.00 41.42 5.01
832 865 2.378634 GGGCCAGGTAGATGTGCCT 61.379 63.158 4.39 0.00 39.92 4.75
836 869 3.324713 AGGTAGATGTGCCTGCCC 58.675 61.111 0.00 0.00 37.40 5.36
837 870 1.307343 AGGTAGATGTGCCTGCCCT 60.307 57.895 0.00 0.00 37.40 5.19
849 882 1.303643 CTGCCCTTTGACCTGGTCC 60.304 63.158 23.42 7.88 0.00 4.46
852 885 1.074951 CCCTTTGACCTGGTCCACC 59.925 63.158 23.42 0.00 0.00 4.61
853 886 1.715019 CCCTTTGACCTGGTCCACCA 61.715 60.000 23.42 2.96 45.30 4.17
855 888 1.609208 CTTTGACCTGGTCCACCAAG 58.391 55.000 23.42 15.28 46.97 3.61
856 889 1.142870 CTTTGACCTGGTCCACCAAGA 59.857 52.381 23.42 0.29 46.97 3.02
859 892 0.984230 GACCTGGTCCACCAAGATGA 59.016 55.000 16.14 0.00 46.97 2.92
1287 1323 3.255379 GAGATTCGGGACACGCGC 61.255 66.667 5.73 0.00 43.86 6.86
1927 1981 3.083997 GGCGTGAGGTGATCCCCT 61.084 66.667 0.00 0.00 37.62 4.79
1947 2002 5.718130 CCCCTCCGACCATTGTAATATACTA 59.282 44.000 0.00 0.00 0.00 1.82
1948 2003 6.350780 CCCCTCCGACCATTGTAATATACTAC 60.351 46.154 0.00 0.00 0.00 2.73
1975 2030 4.261801 ACTGTAGTACAATCCATTGGTGC 58.738 43.478 4.21 0.00 41.96 5.01
2052 2145 3.647113 CCAATGAGATGAGATGAGGAGGT 59.353 47.826 0.00 0.00 0.00 3.85
2055 2148 1.344114 GAGATGAGATGAGGAGGTGGC 59.656 57.143 0.00 0.00 0.00 5.01
2056 2149 1.062275 AGATGAGATGAGGAGGTGGCT 60.062 52.381 0.00 0.00 0.00 4.75
2161 2272 2.411748 ACATACATACACATATGCGCGC 59.588 45.455 27.26 27.26 41.83 6.86
2162 2273 1.056869 TACATACACATATGCGCGCG 58.943 50.000 28.44 28.44 41.83 6.86
2163 2274 0.874175 ACATACACATATGCGCGCGT 60.874 50.000 32.35 30.61 41.83 6.01
2179 2290 2.754375 GTGGGGTGGACGATTGGT 59.246 61.111 0.00 0.00 0.00 3.67
2202 2313 2.044252 CCCCTGCTGCTGCTGATT 60.044 61.111 21.35 0.00 40.01 2.57
2204 2315 0.818445 CCCCTGCTGCTGCTGATTAG 60.818 60.000 21.35 8.23 40.01 1.73
2222 2349 6.209361 TGATTAGCTTGCTATACTCTGTTCG 58.791 40.000 2.99 0.00 0.00 3.95
2230 2357 4.022676 TGCTATACTCTGTTCGTGTGTTCA 60.023 41.667 0.00 0.00 0.00 3.18
2232 2359 5.577164 GCTATACTCTGTTCGTGTGTTCATT 59.423 40.000 0.00 0.00 0.00 2.57
2241 2368 0.318120 GTGTGTTCATTGCAAGGGGG 59.682 55.000 11.73 0.00 0.00 5.40
2288 2511 3.691118 GCTGATTTCAGTGTGGCATCTTA 59.309 43.478 9.21 0.00 45.45 2.10
2289 2512 4.337555 GCTGATTTCAGTGTGGCATCTTAT 59.662 41.667 9.21 0.00 45.45 1.73
2290 2513 5.163581 GCTGATTTCAGTGTGGCATCTTATT 60.164 40.000 9.21 0.00 45.45 1.40
2291 2514 6.038603 GCTGATTTCAGTGTGGCATCTTATTA 59.961 38.462 9.21 0.00 45.45 0.98
2330 2553 1.016130 GTGTGCGATCCCTGTCAGTG 61.016 60.000 0.00 0.00 0.00 3.66
2351 2574 1.669760 TAAAGGGGCGCTGTTGACG 60.670 57.895 7.64 0.00 0.00 4.35
2364 2587 0.171455 GTTGACGTGCCACCAAACAA 59.829 50.000 0.00 0.00 0.00 2.83
2365 2588 0.453793 TTGACGTGCCACCAAACAAG 59.546 50.000 0.00 0.00 0.00 3.16
2366 2589 0.678366 TGACGTGCCACCAAACAAGT 60.678 50.000 0.00 0.00 0.00 3.16
2367 2590 0.248458 GACGTGCCACCAAACAAGTG 60.248 55.000 0.00 0.00 34.91 3.16
2368 2591 0.678366 ACGTGCCACCAAACAAGTGA 60.678 50.000 0.00 0.00 37.42 3.41
2489 2780 3.716006 CCTGTTGGAGCGTGCGTG 61.716 66.667 0.00 0.00 34.57 5.34
2490 2781 4.374702 CTGTTGGAGCGTGCGTGC 62.375 66.667 0.00 0.00 0.00 5.34
2530 2823 0.032130 GACAGACACGGAGCACAAGA 59.968 55.000 0.00 0.00 0.00 3.02
2534 2827 1.000283 AGACACGGAGCACAAGAGAAG 60.000 52.381 0.00 0.00 0.00 2.85
2538 2831 1.074752 CGGAGCACAAGAGAAGAAGC 58.925 55.000 0.00 0.00 0.00 3.86
2660 3048 1.035932 AGTGAGATGGCCATTGCTGC 61.036 55.000 21.84 6.46 37.74 5.25
2661 3049 2.116533 TGAGATGGCCATTGCTGCG 61.117 57.895 21.84 0.00 37.74 5.18
2662 3050 2.044650 AGATGGCCATTGCTGCGT 60.045 55.556 21.84 0.00 37.74 5.24
2663 3051 2.056481 GAGATGGCCATTGCTGCGTC 62.056 60.000 21.84 4.97 37.74 5.19
2664 3052 3.459378 GATGGCCATTGCTGCGTCG 62.459 63.158 21.84 0.00 37.74 5.12
2665 3053 3.974835 ATGGCCATTGCTGCGTCGA 62.975 57.895 14.09 0.00 37.74 4.20
2666 3054 3.204827 GGCCATTGCTGCGTCGAT 61.205 61.111 0.00 0.00 37.74 3.59
2667 3055 2.325857 GCCATTGCTGCGTCGATC 59.674 61.111 0.00 0.00 33.53 3.69
2668 3056 3.017323 CCATTGCTGCGTCGATCC 58.983 61.111 0.00 0.00 0.00 3.36
2669 3057 2.537560 CCATTGCTGCGTCGATCCC 61.538 63.158 0.00 0.00 0.00 3.85
2670 3058 2.586079 ATTGCTGCGTCGATCCCG 60.586 61.111 0.00 0.00 37.07 5.14
2671 3059 4.812476 TTGCTGCGTCGATCCCGG 62.812 66.667 0.00 0.00 36.24 5.73
2673 3061 4.933064 GCTGCGTCGATCCCGGAG 62.933 72.222 0.73 14.18 45.17 4.63
2687 3075 3.866582 GGAGGGGAGGCGTCCATG 61.867 72.222 25.86 0.00 46.07 3.66
2688 3076 4.554036 GAGGGGAGGCGTCCATGC 62.554 72.222 25.86 9.49 46.07 4.06
2710 3098 3.753434 CTGCCTCGCCTCGACACT 61.753 66.667 0.00 0.00 0.00 3.55
2711 3099 3.978723 CTGCCTCGCCTCGACACTG 62.979 68.421 0.00 0.00 0.00 3.66
2712 3100 4.057428 GCCTCGCCTCGACACTGT 62.057 66.667 0.00 0.00 0.00 3.55
2713 3101 2.179517 CCTCGCCTCGACACTGTC 59.820 66.667 0.00 0.00 0.00 3.51
2714 3102 2.336478 CCTCGCCTCGACACTGTCT 61.336 63.158 7.58 0.00 0.00 3.41
2715 3103 1.154131 CTCGCCTCGACACTGTCTG 60.154 63.158 7.58 1.81 0.00 3.51
2716 3104 1.857318 CTCGCCTCGACACTGTCTGT 61.857 60.000 7.58 0.00 34.96 3.41
2724 3112 4.764896 CACTGTCTGTGCAGAGCA 57.235 55.556 5.87 6.88 40.06 4.26
2733 3121 3.991999 TGCAGAGCACCATGAAGC 58.008 55.556 0.00 0.00 31.71 3.86
2734 3122 1.073548 TGCAGAGCACCATGAAGCA 59.926 52.632 11.15 0.00 31.71 3.91
2735 3123 0.958876 TGCAGAGCACCATGAAGCAG 60.959 55.000 11.15 3.17 31.71 4.24
2736 3124 1.801332 CAGAGCACCATGAAGCAGC 59.199 57.895 11.15 0.00 0.00 5.25
2737 3125 0.958876 CAGAGCACCATGAAGCAGCA 60.959 55.000 11.15 0.00 0.00 4.41
2738 3126 0.677098 AGAGCACCATGAAGCAGCAG 60.677 55.000 11.15 0.00 0.00 4.24
2739 3127 0.959372 GAGCACCATGAAGCAGCAGT 60.959 55.000 11.15 0.00 0.00 4.40
2740 3128 0.325933 AGCACCATGAAGCAGCAGTA 59.674 50.000 11.15 0.00 0.00 2.74
2741 3129 1.167851 GCACCATGAAGCAGCAGTAA 58.832 50.000 0.00 0.00 0.00 2.24
2742 3130 1.747355 GCACCATGAAGCAGCAGTAAT 59.253 47.619 0.00 0.00 0.00 1.89
2743 3131 2.165030 GCACCATGAAGCAGCAGTAATT 59.835 45.455 0.00 0.00 0.00 1.40
2744 3132 3.378112 GCACCATGAAGCAGCAGTAATTA 59.622 43.478 0.00 0.00 0.00 1.40
2745 3133 4.142403 GCACCATGAAGCAGCAGTAATTAA 60.142 41.667 0.00 0.00 0.00 1.40
2746 3134 5.622007 GCACCATGAAGCAGCAGTAATTAAA 60.622 40.000 0.00 0.00 0.00 1.52
2747 3135 6.389091 CACCATGAAGCAGCAGTAATTAAAA 58.611 36.000 0.00 0.00 0.00 1.52
2748 3136 6.308766 CACCATGAAGCAGCAGTAATTAAAAC 59.691 38.462 0.00 0.00 0.00 2.43
2749 3137 5.512788 CCATGAAGCAGCAGTAATTAAAACG 59.487 40.000 0.00 0.00 0.00 3.60
2750 3138 5.041951 TGAAGCAGCAGTAATTAAAACGG 57.958 39.130 0.00 0.00 0.00 4.44
2751 3139 4.757657 TGAAGCAGCAGTAATTAAAACGGA 59.242 37.500 0.00 0.00 0.00 4.69
2752 3140 4.946784 AGCAGCAGTAATTAAAACGGAG 57.053 40.909 0.00 0.00 0.00 4.63
2753 3141 4.575885 AGCAGCAGTAATTAAAACGGAGA 58.424 39.130 0.00 0.00 0.00 3.71
2754 3142 4.631813 AGCAGCAGTAATTAAAACGGAGAG 59.368 41.667 0.00 0.00 0.00 3.20
2755 3143 4.630069 GCAGCAGTAATTAAAACGGAGAGA 59.370 41.667 0.00 0.00 0.00 3.10
2756 3144 5.121768 GCAGCAGTAATTAAAACGGAGAGAA 59.878 40.000 0.00 0.00 0.00 2.87
2757 3145 6.534934 CAGCAGTAATTAAAACGGAGAGAAC 58.465 40.000 0.00 0.00 0.00 3.01
2758 3146 6.147164 CAGCAGTAATTAAAACGGAGAGAACA 59.853 38.462 0.00 0.00 0.00 3.18
2759 3147 6.879458 AGCAGTAATTAAAACGGAGAGAACAT 59.121 34.615 0.00 0.00 0.00 2.71
2760 3148 6.961554 GCAGTAATTAAAACGGAGAGAACATG 59.038 38.462 0.00 0.00 0.00 3.21
2761 3149 6.961554 CAGTAATTAAAACGGAGAGAACATGC 59.038 38.462 0.00 0.00 0.00 4.06
2762 3150 4.965119 ATTAAAACGGAGAGAACATGCC 57.035 40.909 0.00 0.00 0.00 4.40
2765 3153 3.786101 CGGAGAGAACATGCCGTG 58.214 61.111 0.00 0.00 38.99 4.94
2766 3154 1.811266 CGGAGAGAACATGCCGTGG 60.811 63.158 0.00 0.00 38.99 4.94
2767 3155 2.109126 GGAGAGAACATGCCGTGGC 61.109 63.158 3.30 3.30 42.35 5.01
2768 3156 2.045926 AGAGAACATGCCGTGGCC 60.046 61.111 8.69 0.00 41.09 5.36
2769 3157 3.499737 GAGAACATGCCGTGGCCG 61.500 66.667 8.69 1.97 41.09 6.13
2784 3172 4.170062 CCGGAGCTGCGTTGCATG 62.170 66.667 26.29 5.88 38.13 4.06
2785 3173 4.824166 CGGAGCTGCGTTGCATGC 62.824 66.667 20.53 11.82 38.13 4.06
2786 3174 4.487412 GGAGCTGCGTTGCATGCC 62.487 66.667 16.68 0.00 38.13 4.40
2787 3175 4.824166 GAGCTGCGTTGCATGCCG 62.824 66.667 16.68 13.70 38.13 5.69
2790 3178 3.736100 CTGCGTTGCATGCCGGAA 61.736 61.111 16.68 0.00 38.13 4.30
2791 3179 3.951655 CTGCGTTGCATGCCGGAAC 62.952 63.158 16.68 12.12 42.20 3.62
2792 3180 4.776647 GCGTTGCATGCCGGAACC 62.777 66.667 16.68 3.98 42.63 3.62
2793 3181 4.114997 CGTTGCATGCCGGAACCC 62.115 66.667 16.68 0.00 42.63 4.11
2794 3182 2.988684 GTTGCATGCCGGAACCCA 60.989 61.111 16.68 0.00 39.89 4.51
2795 3183 2.676121 TTGCATGCCGGAACCCAG 60.676 61.111 16.68 0.00 0.00 4.45
2798 3186 4.738998 CATGCCGGAACCCAGCCA 62.739 66.667 5.05 0.00 0.00 4.75
2799 3187 3.978193 ATGCCGGAACCCAGCCAA 61.978 61.111 5.05 0.00 0.00 4.52
2800 3188 3.521765 ATGCCGGAACCCAGCCAAA 62.522 57.895 5.05 0.00 0.00 3.28
2801 3189 3.680786 GCCGGAACCCAGCCAAAC 61.681 66.667 5.05 0.00 0.00 2.93
2802 3190 3.361977 CCGGAACCCAGCCAAACG 61.362 66.667 0.00 0.00 0.00 3.60
2803 3191 4.038080 CGGAACCCAGCCAAACGC 62.038 66.667 0.00 0.00 37.98 4.84
2813 3201 3.354678 CCAAACGCTTGGTCTGGG 58.645 61.111 9.51 0.00 46.25 4.45
2814 3202 1.228124 CCAAACGCTTGGTCTGGGA 60.228 57.895 9.51 0.00 46.25 4.37
2815 3203 1.237285 CCAAACGCTTGGTCTGGGAG 61.237 60.000 9.51 0.00 46.25 4.30
2816 3204 1.600916 AAACGCTTGGTCTGGGAGC 60.601 57.895 0.00 0.00 0.00 4.70
2835 3223 2.253154 CCGTGTCTGTCGCGTGTA 59.747 61.111 5.77 0.00 46.91 2.90
2836 3224 2.078914 CCGTGTCTGTCGCGTGTAC 61.079 63.158 5.77 0.00 46.91 2.90
2837 3225 2.415220 CGTGTCTGTCGCGTGTACG 61.415 63.158 5.77 6.36 43.87 3.67
2838 3226 1.369689 GTGTCTGTCGCGTGTACGT 60.370 57.895 5.77 0.00 42.22 3.57
2839 3227 0.110688 GTGTCTGTCGCGTGTACGTA 60.111 55.000 5.77 0.00 42.22 3.57
2840 3228 0.110688 TGTCTGTCGCGTGTACGTAC 60.111 55.000 18.90 18.90 42.22 3.67
2841 3229 0.790866 GTCTGTCGCGTGTACGTACC 60.791 60.000 22.43 12.75 42.22 3.34
2842 3230 1.207339 CTGTCGCGTGTACGTACCA 59.793 57.895 22.43 10.99 42.22 3.25
2843 3231 1.061799 CTGTCGCGTGTACGTACCAC 61.062 60.000 22.43 17.79 42.22 4.16
2870 3258 2.843455 CGCGCGCGCTGATTTATA 59.157 55.556 45.97 0.00 39.32 0.98
2871 3259 1.200594 CGCGCGCGCTGATTTATAA 59.799 52.632 45.97 0.00 39.32 0.98
2872 3260 1.047542 CGCGCGCGCTGATTTATAAC 61.048 55.000 45.97 18.47 39.32 1.89
2873 3261 0.042535 GCGCGCGCTGATTTATAACA 60.043 50.000 44.38 0.00 38.26 2.41
2874 3262 1.593551 GCGCGCGCTGATTTATAACAA 60.594 47.619 44.38 0.00 38.26 2.83
2875 3263 2.903678 CGCGCGCTGATTTATAACAAT 58.096 42.857 30.48 0.00 0.00 2.71
2876 3264 3.288242 CGCGCGCTGATTTATAACAATT 58.712 40.909 30.48 0.00 0.00 2.32
2877 3265 3.354920 CGCGCGCTGATTTATAACAATTC 59.645 43.478 30.48 0.00 0.00 2.17
2878 3266 4.278858 GCGCGCTGATTTATAACAATTCA 58.721 39.130 26.67 0.00 0.00 2.57
2879 3267 4.911610 GCGCGCTGATTTATAACAATTCAT 59.088 37.500 26.67 0.00 0.00 2.57
2880 3268 5.399301 GCGCGCTGATTTATAACAATTCATT 59.601 36.000 26.67 0.00 0.00 2.57
2881 3269 6.577055 GCGCGCTGATTTATAACAATTCATTA 59.423 34.615 26.67 0.00 0.00 1.90
2882 3270 7.112844 GCGCGCTGATTTATAACAATTCATTAA 59.887 33.333 26.67 0.00 0.00 1.40
2883 3271 8.952979 CGCGCTGATTTATAACAATTCATTAAA 58.047 29.630 5.56 0.00 0.00 1.52
2894 3282 5.894807 ACAATTCATTAAATTCTGCTCCGG 58.105 37.500 0.00 0.00 35.32 5.14
2895 3283 5.163519 ACAATTCATTAAATTCTGCTCCGGG 60.164 40.000 0.00 0.00 35.32 5.73
2896 3284 2.297701 TCATTAAATTCTGCTCCGGGC 58.702 47.619 0.00 4.52 42.22 6.13
2897 3285 6.620139 AATTCATTAAATTCTGCTCCGGGCA 61.620 40.000 15.52 15.52 39.94 5.36
2898 3286 8.032411 AATTCATTAAATTCTGCTCCGGGCAA 62.032 38.462 16.78 5.60 39.55 4.52
2899 3287 9.922264 AATTCATTAAATTCTGCTCCGGGCAAC 62.922 40.741 16.78 0.00 39.55 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 114 7.686127 GCATATAGACGAAAGGGAAAAGGTCTA 60.686 40.741 0.00 1.71 40.17 2.59
124 133 8.153550 AGGACAAAGGTCTTTATCAGCATATAG 58.846 37.037 4.44 0.00 43.77 1.31
131 140 7.277174 ACAAAAGGACAAAGGTCTTTATCAG 57.723 36.000 4.44 0.00 41.89 2.90
192 202 4.273318 AGATGTATCTTTTTGGGTGCTCC 58.727 43.478 0.00 0.00 31.97 4.70
195 205 5.904362 AGAAGATGTATCTTTTTGGGTGC 57.096 39.130 8.41 0.00 46.47 5.01
289 301 7.177744 GGGGTGGTCTCAATTTATTAACTTTGA 59.822 37.037 0.00 0.00 0.00 2.69
303 315 2.204090 GGGGAGGGGTGGTCTCAA 60.204 66.667 0.00 0.00 33.18 3.02
372 385 0.753262 ACAGTATGAGCCGGGCTTAG 59.247 55.000 24.71 9.57 39.88 2.18
376 389 2.109181 GGACAGTATGAGCCGGGC 59.891 66.667 12.11 12.11 39.69 6.13
377 390 0.179073 CTTGGACAGTATGAGCCGGG 60.179 60.000 2.18 0.00 39.69 5.73
380 393 1.134371 GGACCTTGGACAGTATGAGCC 60.134 57.143 0.00 0.00 39.69 4.70
382 395 3.866651 CTTGGACCTTGGACAGTATGAG 58.133 50.000 0.00 0.00 39.69 2.90
384 397 2.359900 GCTTGGACCTTGGACAGTATG 58.640 52.381 0.00 0.00 46.00 2.39
385 398 1.282157 GGCTTGGACCTTGGACAGTAT 59.718 52.381 0.00 0.00 0.00 2.12
386 399 0.690762 GGCTTGGACCTTGGACAGTA 59.309 55.000 0.00 0.00 0.00 2.74
395 412 2.037772 CGATTATAGCAGGCTTGGACCT 59.962 50.000 0.00 0.00 42.30 3.85
434 451 6.210287 TGCTTCATGTCATATTTTGCATCA 57.790 33.333 0.00 0.00 0.00 3.07
435 452 7.709269 ATTGCTTCATGTCATATTTTGCATC 57.291 32.000 0.00 0.00 0.00 3.91
463 481 2.906691 TCCAAATTGCCTTGGTGTTG 57.093 45.000 8.65 0.00 45.29 3.33
464 482 4.436113 AAATCCAAATTGCCTTGGTGTT 57.564 36.364 8.65 4.11 45.29 3.32
465 483 4.136051 CAAAATCCAAATTGCCTTGGTGT 58.864 39.130 8.65 0.00 45.29 4.16
466 484 3.502979 CCAAAATCCAAATTGCCTTGGTG 59.497 43.478 8.65 1.65 45.29 4.17
467 485 3.138098 ACCAAAATCCAAATTGCCTTGGT 59.862 39.130 11.08 11.08 45.29 3.67
468 486 3.753815 ACCAAAATCCAAATTGCCTTGG 58.246 40.909 10.16 10.16 46.27 3.61
469 487 6.874288 TTTACCAAAATCCAAATTGCCTTG 57.126 33.333 0.00 0.00 0.00 3.61
470 488 7.723172 TCAATTTACCAAAATCCAAATTGCCTT 59.277 29.630 11.77 0.00 43.30 4.35
471 489 7.230027 TCAATTTACCAAAATCCAAATTGCCT 58.770 30.769 11.77 0.00 43.30 4.75
472 490 7.446001 TCAATTTACCAAAATCCAAATTGCC 57.554 32.000 11.77 0.00 43.30 4.52
473 491 8.022550 CCTTCAATTTACCAAAATCCAAATTGC 58.977 33.333 11.77 0.00 43.30 3.56
474 492 8.022550 GCCTTCAATTTACCAAAATCCAAATTG 58.977 33.333 10.78 10.78 44.23 2.32
475 493 7.723172 TGCCTTCAATTTACCAAAATCCAAATT 59.277 29.630 0.00 0.00 34.12 1.82
476 494 7.174772 GTGCCTTCAATTTACCAAAATCCAAAT 59.825 33.333 0.00 0.00 34.12 2.32
477 495 6.484977 GTGCCTTCAATTTACCAAAATCCAAA 59.515 34.615 0.00 0.00 34.12 3.28
478 496 5.994668 GTGCCTTCAATTTACCAAAATCCAA 59.005 36.000 0.00 0.00 34.12 3.53
479 497 5.512232 GGTGCCTTCAATTTACCAAAATCCA 60.512 40.000 0.00 0.00 34.12 3.41
480 498 4.935205 GGTGCCTTCAATTTACCAAAATCC 59.065 41.667 0.00 0.00 34.12 3.01
481 499 5.546526 TGGTGCCTTCAATTTACCAAAATC 58.453 37.500 0.00 0.00 38.39 2.17
482 500 5.512921 CCTGGTGCCTTCAATTTACCAAAAT 60.513 40.000 0.00 0.00 40.58 1.82
483 501 4.202305 CCTGGTGCCTTCAATTTACCAAAA 60.202 41.667 0.00 0.00 40.58 2.44
484 502 3.323403 CCTGGTGCCTTCAATTTACCAAA 59.677 43.478 0.00 0.00 40.58 3.28
485 503 2.896685 CCTGGTGCCTTCAATTTACCAA 59.103 45.455 0.00 0.00 40.58 3.67
486 504 2.109128 TCCTGGTGCCTTCAATTTACCA 59.891 45.455 0.00 0.00 38.98 3.25
487 505 2.492088 GTCCTGGTGCCTTCAATTTACC 59.508 50.000 0.00 0.00 0.00 2.85
488 506 3.057526 GTGTCCTGGTGCCTTCAATTTAC 60.058 47.826 0.00 0.00 0.00 2.01
489 507 3.153919 GTGTCCTGGTGCCTTCAATTTA 58.846 45.455 0.00 0.00 0.00 1.40
490 508 1.963515 GTGTCCTGGTGCCTTCAATTT 59.036 47.619 0.00 0.00 0.00 1.82
491 509 1.145738 AGTGTCCTGGTGCCTTCAATT 59.854 47.619 0.00 0.00 0.00 2.32
492 510 0.773644 AGTGTCCTGGTGCCTTCAAT 59.226 50.000 0.00 0.00 0.00 2.57
493 511 1.429930 TAGTGTCCTGGTGCCTTCAA 58.570 50.000 0.00 0.00 0.00 2.69
494 512 1.347707 CTTAGTGTCCTGGTGCCTTCA 59.652 52.381 0.00 0.00 0.00 3.02
495 513 1.348036 ACTTAGTGTCCTGGTGCCTTC 59.652 52.381 0.00 0.00 0.00 3.46
496 514 1.435256 ACTTAGTGTCCTGGTGCCTT 58.565 50.000 0.00 0.00 0.00 4.35
497 515 2.320681 TACTTAGTGTCCTGGTGCCT 57.679 50.000 0.00 0.00 0.00 4.75
498 516 3.629142 AATACTTAGTGTCCTGGTGCC 57.371 47.619 0.00 0.00 0.00 5.01
499 517 3.617263 CGAAATACTTAGTGTCCTGGTGC 59.383 47.826 0.00 0.00 0.00 5.01
500 518 4.817517 ACGAAATACTTAGTGTCCTGGTG 58.182 43.478 0.00 0.00 0.00 4.17
501 519 5.479124 AACGAAATACTTAGTGTCCTGGT 57.521 39.130 0.00 0.00 0.00 4.00
502 520 7.318141 TCTAAACGAAATACTTAGTGTCCTGG 58.682 38.462 0.00 0.00 0.00 4.45
503 521 8.242053 TCTCTAAACGAAATACTTAGTGTCCTG 58.758 37.037 0.00 0.00 0.00 3.86
504 522 8.242739 GTCTCTAAACGAAATACTTAGTGTCCT 58.757 37.037 0.00 0.00 0.00 3.85
505 523 8.025445 TGTCTCTAAACGAAATACTTAGTGTCC 58.975 37.037 0.00 0.00 0.00 4.02
506 524 8.961294 TGTCTCTAAACGAAATACTTAGTGTC 57.039 34.615 0.00 0.00 0.00 3.67
507 525 9.189723 GTTGTCTCTAAACGAAATACTTAGTGT 57.810 33.333 0.00 0.00 0.00 3.55
508 526 9.408069 AGTTGTCTCTAAACGAAATACTTAGTG 57.592 33.333 0.00 0.00 32.65 2.74
509 527 9.408069 CAGTTGTCTCTAAACGAAATACTTAGT 57.592 33.333 0.00 0.00 32.65 2.24
510 528 9.622004 TCAGTTGTCTCTAAACGAAATACTTAG 57.378 33.333 0.00 0.00 32.65 2.18
511 529 9.403110 GTCAGTTGTCTCTAAACGAAATACTTA 57.597 33.333 0.00 0.00 32.65 2.24
512 530 7.384387 GGTCAGTTGTCTCTAAACGAAATACTT 59.616 37.037 0.00 0.00 32.65 2.24
513 531 6.867293 GGTCAGTTGTCTCTAAACGAAATACT 59.133 38.462 0.00 0.00 32.65 2.12
514 532 6.643770 TGGTCAGTTGTCTCTAAACGAAATAC 59.356 38.462 0.00 0.00 32.65 1.89
515 533 6.643770 GTGGTCAGTTGTCTCTAAACGAAATA 59.356 38.462 0.00 0.00 32.65 1.40
516 534 5.465724 GTGGTCAGTTGTCTCTAAACGAAAT 59.534 40.000 0.00 0.00 32.65 2.17
517 535 4.807304 GTGGTCAGTTGTCTCTAAACGAAA 59.193 41.667 0.00 0.00 32.65 3.46
518 536 4.365723 GTGGTCAGTTGTCTCTAAACGAA 58.634 43.478 0.00 0.00 32.65 3.85
519 537 3.243636 GGTGGTCAGTTGTCTCTAAACGA 60.244 47.826 0.00 0.00 32.65 3.85
520 538 3.057734 GGTGGTCAGTTGTCTCTAAACG 58.942 50.000 0.00 0.00 32.65 3.60
521 539 3.057734 CGGTGGTCAGTTGTCTCTAAAC 58.942 50.000 0.00 0.00 0.00 2.01
522 540 2.960384 TCGGTGGTCAGTTGTCTCTAAA 59.040 45.455 0.00 0.00 0.00 1.85
523 541 2.295349 GTCGGTGGTCAGTTGTCTCTAA 59.705 50.000 0.00 0.00 0.00 2.10
524 542 1.884579 GTCGGTGGTCAGTTGTCTCTA 59.115 52.381 0.00 0.00 0.00 2.43
525 543 0.674534 GTCGGTGGTCAGTTGTCTCT 59.325 55.000 0.00 0.00 0.00 3.10
526 544 0.319641 GGTCGGTGGTCAGTTGTCTC 60.320 60.000 0.00 0.00 0.00 3.36
527 545 1.046472 TGGTCGGTGGTCAGTTGTCT 61.046 55.000 0.00 0.00 0.00 3.41
528 546 0.179067 TTGGTCGGTGGTCAGTTGTC 60.179 55.000 0.00 0.00 0.00 3.18
529 547 0.179056 CTTGGTCGGTGGTCAGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
530 548 1.507141 GCTTGGTCGGTGGTCAGTTG 61.507 60.000 0.00 0.00 0.00 3.16
531 549 1.227853 GCTTGGTCGGTGGTCAGTT 60.228 57.895 0.00 0.00 0.00 3.16
532 550 2.426023 GCTTGGTCGGTGGTCAGT 59.574 61.111 0.00 0.00 0.00 3.41
533 551 1.961277 GTGCTTGGTCGGTGGTCAG 60.961 63.158 0.00 0.00 0.00 3.51
534 552 2.110213 GTGCTTGGTCGGTGGTCA 59.890 61.111 0.00 0.00 0.00 4.02
535 553 1.961277 CAGTGCTTGGTCGGTGGTC 60.961 63.158 0.00 0.00 0.00 4.02
536 554 2.111043 CAGTGCTTGGTCGGTGGT 59.889 61.111 0.00 0.00 0.00 4.16
537 555 1.669115 CTCAGTGCTTGGTCGGTGG 60.669 63.158 0.00 0.00 0.00 4.61
538 556 0.532862 AACTCAGTGCTTGGTCGGTG 60.533 55.000 0.00 0.00 0.00 4.94
539 557 0.180406 AAACTCAGTGCTTGGTCGGT 59.820 50.000 0.00 0.00 0.00 4.69
540 558 1.002468 CAAAACTCAGTGCTTGGTCGG 60.002 52.381 0.00 0.00 0.00 4.79
541 559 1.597937 GCAAAACTCAGTGCTTGGTCG 60.598 52.381 2.82 0.00 37.78 4.79
542 560 1.597937 CGCAAAACTCAGTGCTTGGTC 60.598 52.381 2.82 0.00 38.66 4.02
543 561 0.381801 CGCAAAACTCAGTGCTTGGT 59.618 50.000 2.82 0.00 38.66 3.67
544 562 0.936297 GCGCAAAACTCAGTGCTTGG 60.936 55.000 0.30 0.00 38.66 3.61
545 563 0.936297 GGCGCAAAACTCAGTGCTTG 60.936 55.000 10.83 0.00 40.86 4.01
546 564 1.360192 GGCGCAAAACTCAGTGCTT 59.640 52.632 10.83 0.00 40.86 3.91
547 565 1.174712 ATGGCGCAAAACTCAGTGCT 61.175 50.000 10.83 0.00 40.86 4.40
548 566 0.318955 AATGGCGCAAAACTCAGTGC 60.319 50.000 10.83 0.00 40.36 4.40
549 567 2.138596 AAATGGCGCAAAACTCAGTG 57.861 45.000 10.83 0.00 0.00 3.66
550 568 2.621055 TGTAAATGGCGCAAAACTCAGT 59.379 40.909 10.83 0.00 0.00 3.41
551 569 3.281341 TGTAAATGGCGCAAAACTCAG 57.719 42.857 10.83 0.00 0.00 3.35
552 570 3.505680 AGATGTAAATGGCGCAAAACTCA 59.494 39.130 10.83 1.50 0.00 3.41
553 571 4.096732 AGATGTAAATGGCGCAAAACTC 57.903 40.909 10.83 0.00 0.00 3.01
554 572 4.236935 CAAGATGTAAATGGCGCAAAACT 58.763 39.130 10.83 0.00 0.00 2.66
555 573 3.987220 ACAAGATGTAAATGGCGCAAAAC 59.013 39.130 10.83 0.00 0.00 2.43
556 574 3.986572 CACAAGATGTAAATGGCGCAAAA 59.013 39.130 10.83 0.00 0.00 2.44
557 575 3.573598 CACAAGATGTAAATGGCGCAAA 58.426 40.909 10.83 0.00 0.00 3.68
558 576 2.094803 CCACAAGATGTAAATGGCGCAA 60.095 45.455 10.83 0.00 0.00 4.85
559 577 1.472082 CCACAAGATGTAAATGGCGCA 59.528 47.619 10.83 0.00 0.00 6.09
560 578 1.798813 GCCACAAGATGTAAATGGCGC 60.799 52.381 0.00 0.00 45.85 6.53
561 579 2.193306 GCCACAAGATGTAAATGGCG 57.807 50.000 0.00 0.00 45.85 5.69
563 581 3.627123 TCGATGCCACAAGATGTAAATGG 59.373 43.478 0.00 0.00 0.00 3.16
564 582 4.880886 TCGATGCCACAAGATGTAAATG 57.119 40.909 0.00 0.00 0.00 2.32
565 583 5.895636 TTTCGATGCCACAAGATGTAAAT 57.104 34.783 0.00 0.00 0.00 1.40
566 584 5.895636 ATTTCGATGCCACAAGATGTAAA 57.104 34.783 0.00 0.00 0.00 2.01
567 585 6.765512 TCATATTTCGATGCCACAAGATGTAA 59.234 34.615 0.00 0.00 0.00 2.41
568 586 6.287525 TCATATTTCGATGCCACAAGATGTA 58.712 36.000 0.00 0.00 0.00 2.29
569 587 5.125356 TCATATTTCGATGCCACAAGATGT 58.875 37.500 0.00 0.00 0.00 3.06
570 588 5.678132 TCATATTTCGATGCCACAAGATG 57.322 39.130 0.00 0.00 0.00 2.90
571 589 6.889301 AATCATATTTCGATGCCACAAGAT 57.111 33.333 0.00 0.00 0.00 2.40
572 590 6.318396 TGAAATCATATTTCGATGCCACAAGA 59.682 34.615 7.63 0.00 0.00 3.02
573 591 6.415867 GTGAAATCATATTTCGATGCCACAAG 59.584 38.462 7.63 0.00 31.59 3.16
574 592 6.127786 TGTGAAATCATATTTCGATGCCACAA 60.128 34.615 7.63 0.00 35.20 3.33
575 593 5.356470 TGTGAAATCATATTTCGATGCCACA 59.644 36.000 7.63 0.00 35.48 4.17
576 594 5.820131 TGTGAAATCATATTTCGATGCCAC 58.180 37.500 7.63 0.00 31.75 5.01
577 595 6.039605 ACATGTGAAATCATATTTCGATGCCA 59.960 34.615 16.46 7.16 30.34 4.92
578 596 6.441274 ACATGTGAAATCATATTTCGATGCC 58.559 36.000 16.46 3.45 30.34 4.40
579 597 7.919313 AACATGTGAAATCATATTTCGATGC 57.081 32.000 0.00 6.61 30.34 3.91
580 598 8.961092 GGAAACATGTGAAATCATATTTCGATG 58.039 33.333 0.00 15.65 40.18 3.84
581 599 8.685427 TGGAAACATGTGAAATCATATTTCGAT 58.315 29.630 0.00 1.12 40.18 3.59
582 600 8.049655 TGGAAACATGTGAAATCATATTTCGA 57.950 30.769 0.00 0.00 40.18 3.71
609 627 2.527442 TCATAGTCGCATCGCTATCG 57.473 50.000 0.00 0.00 29.29 2.92
610 628 3.111838 CCATCATAGTCGCATCGCTATC 58.888 50.000 0.00 0.00 29.29 2.08
611 629 2.736719 GCCATCATAGTCGCATCGCTAT 60.737 50.000 0.00 0.00 30.82 2.97
612 630 1.402852 GCCATCATAGTCGCATCGCTA 60.403 52.381 0.00 0.00 0.00 4.26
613 631 0.668706 GCCATCATAGTCGCATCGCT 60.669 55.000 0.00 0.00 0.00 4.93
614 632 0.668706 AGCCATCATAGTCGCATCGC 60.669 55.000 0.00 0.00 0.00 4.58
615 633 1.344458 GAGCCATCATAGTCGCATCG 58.656 55.000 0.00 0.00 0.00 3.84
616 634 1.001293 TGGAGCCATCATAGTCGCATC 59.999 52.381 0.00 0.00 0.00 3.91
617 635 1.051008 TGGAGCCATCATAGTCGCAT 58.949 50.000 0.00 0.00 0.00 4.73
618 636 1.051008 ATGGAGCCATCATAGTCGCA 58.949 50.000 0.00 0.00 29.42 5.10
619 637 1.001293 TCATGGAGCCATCATAGTCGC 59.999 52.381 0.00 0.00 33.90 5.19
620 638 3.062763 GTTCATGGAGCCATCATAGTCG 58.937 50.000 0.00 0.00 33.90 4.18
621 639 3.072184 AGGTTCATGGAGCCATCATAGTC 59.928 47.826 0.00 0.00 35.33 2.59
622 640 3.051581 AGGTTCATGGAGCCATCATAGT 58.948 45.455 0.00 0.00 35.33 2.12
623 641 3.672808 GAGGTTCATGGAGCCATCATAG 58.327 50.000 0.00 0.00 35.33 2.23
624 642 2.037641 CGAGGTTCATGGAGCCATCATA 59.962 50.000 0.00 0.00 35.33 2.15
625 643 1.202734 CGAGGTTCATGGAGCCATCAT 60.203 52.381 0.00 0.00 35.33 2.45
626 644 0.178767 CGAGGTTCATGGAGCCATCA 59.821 55.000 0.00 0.00 35.33 3.07
627 645 0.465705 TCGAGGTTCATGGAGCCATC 59.534 55.000 0.00 0.00 35.33 3.51
628 646 0.911769 TTCGAGGTTCATGGAGCCAT 59.088 50.000 0.00 0.00 35.33 4.40
629 647 0.690192 TTTCGAGGTTCATGGAGCCA 59.310 50.000 0.00 0.00 35.33 4.75
630 648 1.087501 GTTTCGAGGTTCATGGAGCC 58.912 55.000 0.00 0.00 32.98 4.70
631 649 1.464997 GTGTTTCGAGGTTCATGGAGC 59.535 52.381 0.00 0.00 0.00 4.70
632 650 2.076863 GGTGTTTCGAGGTTCATGGAG 58.923 52.381 0.00 0.00 0.00 3.86
633 651 1.697432 AGGTGTTTCGAGGTTCATGGA 59.303 47.619 0.00 0.00 0.00 3.41
634 652 2.076863 GAGGTGTTTCGAGGTTCATGG 58.923 52.381 0.00 0.00 0.00 3.66
635 653 1.726791 CGAGGTGTTTCGAGGTTCATG 59.273 52.381 0.00 0.00 43.03 3.07
636 654 1.337823 CCGAGGTGTTTCGAGGTTCAT 60.338 52.381 0.00 0.00 43.03 2.57
637 655 0.032952 CCGAGGTGTTTCGAGGTTCA 59.967 55.000 0.00 0.00 43.03 3.18
638 656 1.289800 GCCGAGGTGTTTCGAGGTTC 61.290 60.000 0.00 0.00 43.03 3.62
639 657 1.301479 GCCGAGGTGTTTCGAGGTT 60.301 57.895 0.00 0.00 43.03 3.50
640 658 2.156051 GAGCCGAGGTGTTTCGAGGT 62.156 60.000 0.00 0.00 43.03 3.85
641 659 1.446272 GAGCCGAGGTGTTTCGAGG 60.446 63.158 0.00 0.00 43.03 4.63
642 660 1.446272 GGAGCCGAGGTGTTTCGAG 60.446 63.158 0.00 0.00 43.03 4.04
643 661 2.654877 GGAGCCGAGGTGTTTCGA 59.345 61.111 0.00 0.00 43.03 3.71
644 662 2.809601 CGGAGCCGAGGTGTTTCG 60.810 66.667 2.00 0.00 42.83 3.46
645 663 2.434359 CCGGAGCCGAGGTGTTTC 60.434 66.667 11.05 0.00 42.83 2.78
646 664 4.699522 GCCGGAGCCGAGGTGTTT 62.700 66.667 5.05 0.00 42.83 2.83
649 667 4.473520 AATGCCGGAGCCGAGGTG 62.474 66.667 5.05 0.00 42.83 4.00
650 668 4.162690 GAATGCCGGAGCCGAGGT 62.163 66.667 5.05 0.00 42.83 3.85
651 669 3.680620 TTGAATGCCGGAGCCGAGG 62.681 63.158 5.05 0.00 42.83 4.63
652 670 2.125147 TTGAATGCCGGAGCCGAG 60.125 61.111 5.05 1.79 42.83 4.63
653 671 2.435938 GTTGAATGCCGGAGCCGA 60.436 61.111 5.05 0.00 42.83 5.54
654 672 3.508840 GGTTGAATGCCGGAGCCG 61.509 66.667 5.05 1.06 38.69 5.52
655 673 3.140814 GGGTTGAATGCCGGAGCC 61.141 66.667 5.05 0.00 38.69 4.70
656 674 1.657751 GAAGGGTTGAATGCCGGAGC 61.658 60.000 5.05 0.00 40.48 4.70
657 675 0.035056 AGAAGGGTTGAATGCCGGAG 60.035 55.000 5.05 0.00 0.00 4.63
658 676 0.035439 GAGAAGGGTTGAATGCCGGA 60.035 55.000 5.05 0.00 0.00 5.14
659 677 1.369091 CGAGAAGGGTTGAATGCCGG 61.369 60.000 0.00 0.00 0.00 6.13
660 678 1.369091 CCGAGAAGGGTTGAATGCCG 61.369 60.000 0.00 0.00 35.97 5.69
661 679 1.657751 GCCGAGAAGGGTTGAATGCC 61.658 60.000 0.00 0.00 41.48 4.40
662 680 1.803289 GCCGAGAAGGGTTGAATGC 59.197 57.895 0.00 0.00 41.48 3.56
663 681 0.673644 ACGCCGAGAAGGGTTGAATG 60.674 55.000 0.00 0.00 41.48 2.67
664 682 0.673644 CACGCCGAGAAGGGTTGAAT 60.674 55.000 0.00 0.00 41.48 2.57
665 683 1.301401 CACGCCGAGAAGGGTTGAA 60.301 57.895 0.00 0.00 41.48 2.69
666 684 2.342279 CACGCCGAGAAGGGTTGA 59.658 61.111 0.00 0.00 41.48 3.18
667 685 2.030562 ACACGCCGAGAAGGGTTG 59.969 61.111 0.00 0.00 41.48 3.77
668 686 2.030562 CACACGCCGAGAAGGGTT 59.969 61.111 0.00 0.00 41.48 4.11
669 687 3.231736 ACACACGCCGAGAAGGGT 61.232 61.111 0.00 0.00 41.48 4.34
670 688 2.738521 CACACACGCCGAGAAGGG 60.739 66.667 0.00 0.00 41.48 3.95
671 689 2.029073 ACACACACGCCGAGAAGG 59.971 61.111 0.00 0.00 44.97 3.46
672 690 1.591594 ACACACACACGCCGAGAAG 60.592 57.895 0.00 0.00 0.00 2.85
673 691 1.880796 CACACACACACGCCGAGAA 60.881 57.895 0.00 0.00 0.00 2.87
674 692 2.279186 CACACACACACGCCGAGA 60.279 61.111 0.00 0.00 0.00 4.04
675 693 2.584970 ACACACACACACGCCGAG 60.585 61.111 0.00 0.00 0.00 4.63
676 694 2.888051 CACACACACACACGCCGA 60.888 61.111 0.00 0.00 0.00 5.54
677 695 3.192230 ACACACACACACACGCCG 61.192 61.111 0.00 0.00 0.00 6.46
678 696 2.395360 ACACACACACACACACGCC 61.395 57.895 0.00 0.00 0.00 5.68
679 697 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
680 698 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
681 699 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
682 700 1.533299 GAACACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
683 701 1.463363 CGAACACACACACACACACAC 60.463 52.381 0.00 0.00 0.00 3.82
684 702 0.793250 CGAACACACACACACACACA 59.207 50.000 0.00 0.00 0.00 3.72
685 703 0.520412 GCGAACACACACACACACAC 60.520 55.000 0.00 0.00 0.00 3.82
686 704 0.951040 TGCGAACACACACACACACA 60.951 50.000 0.00 0.00 0.00 3.72
687 705 0.520412 GTGCGAACACACACACACAC 60.520 55.000 0.00 0.00 46.61 3.82
688 706 1.791024 GTGCGAACACACACACACA 59.209 52.632 0.00 0.00 46.61 3.72
689 707 4.662859 GTGCGAACACACACACAC 57.337 55.556 0.00 0.00 46.61 3.82
716 734 8.017946 GCGAAAAGAAGATCTGAGTACAAATTT 58.982 33.333 0.00 0.00 0.00 1.82
717 735 7.173218 TGCGAAAAGAAGATCTGAGTACAAATT 59.827 33.333 0.00 0.00 0.00 1.82
718 736 6.650807 TGCGAAAAGAAGATCTGAGTACAAAT 59.349 34.615 0.00 0.00 0.00 2.32
719 737 5.989168 TGCGAAAAGAAGATCTGAGTACAAA 59.011 36.000 0.00 0.00 0.00 2.83
720 738 5.405571 GTGCGAAAAGAAGATCTGAGTACAA 59.594 40.000 0.00 0.00 0.00 2.41
721 739 4.923871 GTGCGAAAAGAAGATCTGAGTACA 59.076 41.667 0.00 0.00 0.00 2.90
722 740 4.327627 GGTGCGAAAAGAAGATCTGAGTAC 59.672 45.833 0.00 0.00 0.00 2.73
723 741 4.021456 TGGTGCGAAAAGAAGATCTGAGTA 60.021 41.667 0.00 0.00 0.00 2.59
724 742 3.244215 TGGTGCGAAAAGAAGATCTGAGT 60.244 43.478 0.00 0.00 0.00 3.41
725 743 3.329386 TGGTGCGAAAAGAAGATCTGAG 58.671 45.455 0.00 0.00 0.00 3.35
726 744 3.401033 TGGTGCGAAAAGAAGATCTGA 57.599 42.857 0.00 0.00 0.00 3.27
727 745 3.665323 CGTTGGTGCGAAAAGAAGATCTG 60.665 47.826 0.00 0.00 0.00 2.90
728 746 2.480419 CGTTGGTGCGAAAAGAAGATCT 59.520 45.455 0.00 0.00 0.00 2.75
729 747 2.478894 TCGTTGGTGCGAAAAGAAGATC 59.521 45.455 0.00 0.00 37.99 2.75
730 748 2.480419 CTCGTTGGTGCGAAAAGAAGAT 59.520 45.455 0.00 0.00 40.57 2.40
731 749 1.864711 CTCGTTGGTGCGAAAAGAAGA 59.135 47.619 0.00 0.00 40.57 2.87
732 750 1.597663 ACTCGTTGGTGCGAAAAGAAG 59.402 47.619 0.00 0.00 40.57 2.85
733 751 1.329292 CACTCGTTGGTGCGAAAAGAA 59.671 47.619 0.00 0.00 40.57 2.52
734 752 0.934496 CACTCGTTGGTGCGAAAAGA 59.066 50.000 0.00 0.00 40.57 2.52
735 753 0.934496 TCACTCGTTGGTGCGAAAAG 59.066 50.000 0.00 0.00 40.57 2.27
736 754 0.653636 GTCACTCGTTGGTGCGAAAA 59.346 50.000 0.00 0.00 40.57 2.29
737 755 0.460459 TGTCACTCGTTGGTGCGAAA 60.460 50.000 0.00 0.00 40.57 3.46
738 756 0.249699 ATGTCACTCGTTGGTGCGAA 60.250 50.000 0.00 0.00 40.57 4.70
739 757 0.249699 AATGTCACTCGTTGGTGCGA 60.250 50.000 0.00 0.00 37.16 5.10
740 758 1.424403 TAATGTCACTCGTTGGTGCG 58.576 50.000 0.00 0.00 37.16 5.34
741 759 2.476185 GCATAATGTCACTCGTTGGTGC 60.476 50.000 0.00 0.00 37.16 5.01
742 760 2.741517 TGCATAATGTCACTCGTTGGTG 59.258 45.455 0.00 0.00 38.44 4.17
743 761 3.052455 TGCATAATGTCACTCGTTGGT 57.948 42.857 0.00 0.00 0.00 3.67
744 762 5.929697 ATATGCATAATGTCACTCGTTGG 57.070 39.130 11.13 0.00 0.00 3.77
745 763 7.408910 TGAAATATGCATAATGTCACTCGTTG 58.591 34.615 11.13 0.00 0.00 4.10
746 764 7.552458 TGAAATATGCATAATGTCACTCGTT 57.448 32.000 11.13 0.00 0.00 3.85
747 765 7.552458 TTGAAATATGCATAATGTCACTCGT 57.448 32.000 11.13 0.00 0.00 4.18
748 766 8.839947 TTTTGAAATATGCATAATGTCACTCG 57.160 30.769 11.13 0.00 0.00 4.18
757 775 9.409312 CCTGCGATATTTTTGAAATATGCATAA 57.591 29.630 11.13 0.00 32.17 1.90
758 776 8.028354 CCCTGCGATATTTTTGAAATATGCATA 58.972 33.333 9.27 9.27 32.17 3.14
759 777 6.869913 CCCTGCGATATTTTTGAAATATGCAT 59.130 34.615 19.00 3.79 32.17 3.96
760 778 6.215121 CCCTGCGATATTTTTGAAATATGCA 58.785 36.000 18.34 18.34 31.94 3.96
761 779 5.119125 GCCCTGCGATATTTTTGAAATATGC 59.881 40.000 9.86 12.46 0.00 3.14
811 844 1.153086 CACATCTACCTGGCCCAGC 60.153 63.158 4.81 0.00 0.00 4.85
819 852 0.916358 AAGGGCAGGCACATCTACCT 60.916 55.000 0.00 0.00 36.45 3.08
820 853 0.034089 AAAGGGCAGGCACATCTACC 60.034 55.000 0.00 0.00 0.00 3.18
822 855 0.991146 TCAAAGGGCAGGCACATCTA 59.009 50.000 0.00 0.00 0.00 1.98
823 856 0.610232 GTCAAAGGGCAGGCACATCT 60.610 55.000 0.00 0.00 0.00 2.90
824 857 1.598701 GGTCAAAGGGCAGGCACATC 61.599 60.000 0.00 0.00 0.00 3.06
825 858 1.607467 GGTCAAAGGGCAGGCACAT 60.607 57.895 0.00 0.00 0.00 3.21
828 861 2.115910 CAGGTCAAAGGGCAGGCA 59.884 61.111 0.00 0.00 0.00 4.75
829 862 2.677875 CCAGGTCAAAGGGCAGGC 60.678 66.667 0.00 0.00 0.00 4.85
830 863 1.303643 GACCAGGTCAAAGGGCAGG 60.304 63.158 15.43 0.00 31.39 4.85
831 864 1.303643 GGACCAGGTCAAAGGGCAG 60.304 63.158 21.75 0.00 33.29 4.85
832 865 2.081787 TGGACCAGGTCAAAGGGCA 61.082 57.895 21.75 5.91 33.29 5.36
833 866 1.603739 GTGGACCAGGTCAAAGGGC 60.604 63.158 21.75 3.14 33.68 5.19
834 867 1.074951 GGTGGACCAGGTCAAAGGG 59.925 63.158 21.75 0.00 33.68 3.95
835 868 1.843421 TGGTGGACCAGGTCAAAGG 59.157 57.895 21.75 0.00 42.01 3.11
849 882 2.385013 TGTCGGTCATCATCTTGGTG 57.615 50.000 0.00 0.00 0.00 4.17
852 885 2.993220 TCGTTTGTCGGTCATCATCTTG 59.007 45.455 0.00 0.00 40.32 3.02
853 886 3.056821 TCTCGTTTGTCGGTCATCATCTT 60.057 43.478 0.00 0.00 40.32 2.40
855 888 2.854777 CTCTCGTTTGTCGGTCATCATC 59.145 50.000 0.00 0.00 40.32 2.92
856 889 2.417379 CCTCTCGTTTGTCGGTCATCAT 60.417 50.000 0.00 0.00 40.32 2.45
859 892 1.202582 CTCCTCTCGTTTGTCGGTCAT 59.797 52.381 0.00 0.00 40.32 3.06
1362 1398 3.181967 CAGAAGAAGACGCGGCCG 61.182 66.667 24.05 24.05 41.14 6.13
1500 1536 0.605589 AGAACTCGAGCCACAGGAAG 59.394 55.000 13.61 0.00 0.00 3.46
1873 1912 7.796054 TCCTTCTTCTTCTTCTTCTTCTTCAA 58.204 34.615 0.00 0.00 0.00 2.69
1947 2002 7.618512 ACCAATGGATTGTACTACAGTAGTAGT 59.381 37.037 19.16 12.85 46.19 2.73
1948 2003 7.921214 CACCAATGGATTGTACTACAGTAGTAG 59.079 40.741 19.16 7.87 41.59 2.57
1975 2030 4.156190 CGGCCTCTACCTATATGTACAGTG 59.844 50.000 0.00 0.00 0.00 3.66
2013 2068 2.189499 GGGATGCCAGATGCCGAAC 61.189 63.158 0.00 0.00 40.16 3.95
2055 2148 1.332997 GGTTTATAGCAGCAGCAGCAG 59.667 52.381 12.92 0.00 45.49 4.24
2056 2149 1.339920 TGGTTTATAGCAGCAGCAGCA 60.340 47.619 12.92 0.00 45.49 4.41
2161 2272 2.435938 CCAATCGTCCACCCCACG 60.436 66.667 0.00 0.00 38.67 4.94
2162 2273 0.958876 GAACCAATCGTCCACCCCAC 60.959 60.000 0.00 0.00 0.00 4.61
2163 2274 1.377229 GAACCAATCGTCCACCCCA 59.623 57.895 0.00 0.00 0.00 4.96
2179 2290 2.032528 CAGCAGCAGGGGTTCGAA 59.967 61.111 0.00 0.00 0.00 3.71
2202 2313 4.398358 ACACGAACAGAGTATAGCAAGCTA 59.602 41.667 4.00 4.00 0.00 3.32
2204 2315 3.304559 CACACGAACAGAGTATAGCAAGC 59.695 47.826 0.00 0.00 0.00 4.01
2205 2316 4.486090 ACACACGAACAGAGTATAGCAAG 58.514 43.478 0.00 0.00 0.00 4.01
2206 2317 4.514781 ACACACGAACAGAGTATAGCAA 57.485 40.909 0.00 0.00 0.00 3.91
2222 2349 0.318120 CCCCCTTGCAATGAACACAC 59.682 55.000 0.00 0.00 0.00 3.82
2241 2368 4.662961 GGCCAACAAACAGCGCCC 62.663 66.667 2.29 0.00 33.30 6.13
2243 2370 2.348605 TTCAGGCCAACAAACAGCGC 62.349 55.000 5.01 0.00 0.00 5.92
2244 2371 0.594796 GTTCAGGCCAACAAACAGCG 60.595 55.000 5.01 0.00 0.00 5.18
2245 2372 0.459489 TGTTCAGGCCAACAAACAGC 59.541 50.000 5.01 0.00 33.21 4.40
2288 2511 9.589461 ACACTAGCTAGTATGGTCTGTAATAAT 57.411 33.333 25.63 0.00 34.13 1.28
2289 2512 8.847196 CACACTAGCTAGTATGGTCTGTAATAA 58.153 37.037 25.63 0.00 34.13 1.40
2290 2513 7.040617 GCACACTAGCTAGTATGGTCTGTAATA 60.041 40.741 28.62 0.00 31.60 0.98
2291 2514 6.239064 GCACACTAGCTAGTATGGTCTGTAAT 60.239 42.308 28.62 0.40 31.60 1.89
2330 2553 0.321298 TCAACAGCGCCCCTTTACTC 60.321 55.000 2.29 0.00 0.00 2.59
2351 2574 1.476488 ACTTCACTTGTTTGGTGGCAC 59.524 47.619 9.70 9.70 35.61 5.01
2364 2587 2.408050 GCGTCTGTTCATCACTTCACT 58.592 47.619 0.00 0.00 0.00 3.41
2365 2588 1.125021 CGCGTCTGTTCATCACTTCAC 59.875 52.381 0.00 0.00 0.00 3.18
2366 2589 1.269569 ACGCGTCTGTTCATCACTTCA 60.270 47.619 5.58 0.00 0.00 3.02
2367 2590 1.419374 ACGCGTCTGTTCATCACTTC 58.581 50.000 5.58 0.00 0.00 3.01
2368 2591 2.717580 TACGCGTCTGTTCATCACTT 57.282 45.000 18.63 0.00 0.00 3.16
2495 2786 0.875908 TGTCTTCTCTGTGCACGCAC 60.876 55.000 15.20 15.20 46.33 5.34
2496 2787 0.598419 CTGTCTTCTCTGTGCACGCA 60.598 55.000 13.13 0.00 0.00 5.24
2497 2788 0.319040 TCTGTCTTCTCTGTGCACGC 60.319 55.000 13.13 0.00 0.00 5.34
2498 2789 1.269257 TGTCTGTCTTCTCTGTGCACG 60.269 52.381 13.13 7.36 0.00 5.34
2499 2790 2.131183 GTGTCTGTCTTCTCTGTGCAC 58.869 52.381 10.75 10.75 0.00 4.57
2500 2791 1.269257 CGTGTCTGTCTTCTCTGTGCA 60.269 52.381 0.00 0.00 0.00 4.57
2501 2792 1.413382 CGTGTCTGTCTTCTCTGTGC 58.587 55.000 0.00 0.00 0.00 4.57
2502 2793 1.609072 TCCGTGTCTGTCTTCTCTGTG 59.391 52.381 0.00 0.00 0.00 3.66
2503 2794 1.883275 CTCCGTGTCTGTCTTCTCTGT 59.117 52.381 0.00 0.00 0.00 3.41
2504 2795 1.402194 GCTCCGTGTCTGTCTTCTCTG 60.402 57.143 0.00 0.00 0.00 3.35
2538 2831 0.673644 ACCAGAAAACGGAGCCATCG 60.674 55.000 0.00 0.00 0.00 3.84
2670 3058 3.866582 CATGGACGCCTCCCCTCC 61.867 72.222 0.00 0.00 35.34 4.30
2671 3059 4.554036 GCATGGACGCCTCCCCTC 62.554 72.222 0.00 0.00 35.34 4.30
2693 3081 3.753434 AGTGTCGAGGCGAGGCAG 61.753 66.667 0.00 0.00 36.23 4.85
2694 3082 4.056125 CAGTGTCGAGGCGAGGCA 62.056 66.667 0.00 0.00 36.23 4.75
2695 3083 3.973267 GACAGTGTCGAGGCGAGGC 62.973 68.421 7.68 0.00 36.23 4.70
2696 3084 2.179517 GACAGTGTCGAGGCGAGG 59.820 66.667 7.68 0.00 36.23 4.63
2697 3085 1.154131 CAGACAGTGTCGAGGCGAG 60.154 63.158 17.40 0.06 36.23 5.03
2698 3086 1.897137 ACAGACAGTGTCGAGGCGA 60.897 57.895 17.40 0.00 37.67 5.54
2699 3087 1.730902 CACAGACAGTGTCGAGGCG 60.731 63.158 17.40 7.69 43.40 5.52
2700 3088 4.251760 CACAGACAGTGTCGAGGC 57.748 61.111 17.40 0.00 43.40 4.70
2716 3104 0.958876 CTGCTTCATGGTGCTCTGCA 60.959 55.000 11.06 0.00 35.60 4.41
2717 3105 1.801332 CTGCTTCATGGTGCTCTGC 59.199 57.895 11.06 0.00 0.00 4.26
2718 3106 0.958876 TGCTGCTTCATGGTGCTCTG 60.959 55.000 0.00 4.50 0.00 3.35
2719 3107 0.677098 CTGCTGCTTCATGGTGCTCT 60.677 55.000 0.00 0.00 0.00 4.09
2720 3108 0.959372 ACTGCTGCTTCATGGTGCTC 60.959 55.000 0.00 5.17 0.00 4.26
2721 3109 0.325933 TACTGCTGCTTCATGGTGCT 59.674 50.000 0.00 0.00 0.00 4.40
2722 3110 1.167851 TTACTGCTGCTTCATGGTGC 58.832 50.000 0.00 0.00 0.00 5.01
2723 3111 5.565592 TTAATTACTGCTGCTTCATGGTG 57.434 39.130 0.00 0.00 0.00 4.17
2724 3112 6.389906 GTTTTAATTACTGCTGCTTCATGGT 58.610 36.000 0.00 0.00 0.00 3.55
2725 3113 5.512788 CGTTTTAATTACTGCTGCTTCATGG 59.487 40.000 0.00 0.00 0.00 3.66
2726 3114 5.512788 CCGTTTTAATTACTGCTGCTTCATG 59.487 40.000 0.00 0.00 0.00 3.07
2727 3115 5.414454 TCCGTTTTAATTACTGCTGCTTCAT 59.586 36.000 0.00 0.00 0.00 2.57
2728 3116 4.757657 TCCGTTTTAATTACTGCTGCTTCA 59.242 37.500 0.00 0.00 0.00 3.02
2729 3117 5.121768 TCTCCGTTTTAATTACTGCTGCTTC 59.878 40.000 0.00 0.00 0.00 3.86
2730 3118 5.001232 TCTCCGTTTTAATTACTGCTGCTT 58.999 37.500 0.00 0.00 0.00 3.91
2731 3119 4.575885 TCTCCGTTTTAATTACTGCTGCT 58.424 39.130 0.00 0.00 0.00 4.24
2732 3120 4.630069 TCTCTCCGTTTTAATTACTGCTGC 59.370 41.667 0.00 0.00 0.00 5.25
2733 3121 6.147164 TGTTCTCTCCGTTTTAATTACTGCTG 59.853 38.462 0.00 0.00 0.00 4.41
2734 3122 6.228258 TGTTCTCTCCGTTTTAATTACTGCT 58.772 36.000 0.00 0.00 0.00 4.24
2735 3123 6.476243 TGTTCTCTCCGTTTTAATTACTGC 57.524 37.500 0.00 0.00 0.00 4.40
2736 3124 6.961554 GCATGTTCTCTCCGTTTTAATTACTG 59.038 38.462 0.00 0.00 0.00 2.74
2737 3125 6.093633 GGCATGTTCTCTCCGTTTTAATTACT 59.906 38.462 0.00 0.00 0.00 2.24
2738 3126 6.255950 GGCATGTTCTCTCCGTTTTAATTAC 58.744 40.000 0.00 0.00 0.00 1.89
2739 3127 5.064198 CGGCATGTTCTCTCCGTTTTAATTA 59.936 40.000 0.00 0.00 37.33 1.40
2740 3128 4.142687 CGGCATGTTCTCTCCGTTTTAATT 60.143 41.667 0.00 0.00 37.33 1.40
2741 3129 3.374058 CGGCATGTTCTCTCCGTTTTAAT 59.626 43.478 0.00 0.00 37.33 1.40
2742 3130 2.739913 CGGCATGTTCTCTCCGTTTTAA 59.260 45.455 0.00 0.00 37.33 1.52
2743 3131 2.343101 CGGCATGTTCTCTCCGTTTTA 58.657 47.619 0.00 0.00 37.33 1.52
2744 3132 1.156736 CGGCATGTTCTCTCCGTTTT 58.843 50.000 0.00 0.00 37.33 2.43
2745 3133 2.840974 CGGCATGTTCTCTCCGTTT 58.159 52.632 0.00 0.00 37.33 3.60
2746 3134 4.598257 CGGCATGTTCTCTCCGTT 57.402 55.556 0.00 0.00 37.33 4.44
2748 3136 1.811266 CCACGGCATGTTCTCTCCG 60.811 63.158 5.75 5.75 46.61 4.63
2749 3137 2.109126 GCCACGGCATGTTCTCTCC 61.109 63.158 2.36 0.00 41.49 3.71
2750 3138 2.109126 GGCCACGGCATGTTCTCTC 61.109 63.158 10.83 0.00 44.11 3.20
2751 3139 2.045926 GGCCACGGCATGTTCTCT 60.046 61.111 10.83 0.00 44.11 3.10
2752 3140 3.499737 CGGCCACGGCATGTTCTC 61.500 66.667 10.83 0.00 44.11 2.87
2767 3155 4.170062 CATGCAACGCAGCTCCGG 62.170 66.667 0.33 0.00 43.65 5.14
2768 3156 4.824166 GCATGCAACGCAGCTCCG 62.824 66.667 14.21 0.00 43.65 4.63
2769 3157 4.487412 GGCATGCAACGCAGCTCC 62.487 66.667 21.36 0.00 43.65 4.70
2770 3158 4.824166 CGGCATGCAACGCAGCTC 62.824 66.667 21.36 0.00 43.65 4.09
2773 3161 3.736100 TTCCGGCATGCAACGCAG 61.736 61.111 21.36 8.89 43.65 5.18
2774 3162 4.036804 GTTCCGGCATGCAACGCA 62.037 61.111 21.36 0.00 44.86 5.24
2775 3163 4.776647 GGTTCCGGCATGCAACGC 62.777 66.667 21.36 5.03 0.00 4.84
2776 3164 4.114997 GGGTTCCGGCATGCAACG 62.115 66.667 21.36 14.64 0.00 4.10
2777 3165 2.988684 TGGGTTCCGGCATGCAAC 60.989 61.111 21.36 15.01 0.00 4.17
2778 3166 2.676121 CTGGGTTCCGGCATGCAA 60.676 61.111 21.36 1.85 0.00 4.08
2785 3173 3.361977 CGTTTGGCTGGGTTCCGG 61.362 66.667 0.00 0.00 0.00 5.14
2786 3174 4.038080 GCGTTTGGCTGGGTTCCG 62.038 66.667 0.00 0.00 39.11 4.30
2797 3185 1.856265 GCTCCCAGACCAAGCGTTTG 61.856 60.000 4.84 4.84 0.00 2.93
2798 3186 1.600916 GCTCCCAGACCAAGCGTTT 60.601 57.895 0.00 0.00 0.00 3.60
2799 3187 2.032681 GCTCCCAGACCAAGCGTT 59.967 61.111 0.00 0.00 0.00 4.84
2817 3205 3.884581 TACACGCGACAGACACGGC 62.885 63.158 15.93 0.00 0.00 5.68
2818 3206 2.078914 GTACACGCGACAGACACGG 61.079 63.158 15.93 0.00 0.00 4.94
2819 3207 2.415220 CGTACACGCGACAGACACG 61.415 63.158 15.93 13.04 0.00 4.49
2820 3208 0.110688 TACGTACACGCGACAGACAC 60.111 55.000 15.93 5.41 44.43 3.67
2821 3209 0.110688 GTACGTACACGCGACAGACA 60.111 55.000 20.67 0.00 44.43 3.41
2822 3210 0.790866 GGTACGTACACGCGACAGAC 60.791 60.000 26.02 3.97 44.43 3.51
2823 3211 1.227342 TGGTACGTACACGCGACAGA 61.227 55.000 26.02 0.00 44.43 3.41
2824 3212 1.061799 GTGGTACGTACACGCGACAG 61.062 60.000 26.02 4.52 44.43 3.51
2825 3213 1.082169 GTGGTACGTACACGCGACA 60.082 57.895 26.02 11.49 44.43 4.35
2826 3214 3.741058 GTGGTACGTACACGCGAC 58.259 61.111 26.02 9.02 44.43 5.19
2831 3219 0.664166 CACACCCGTGGTACGTACAC 60.664 60.000 26.02 19.42 40.58 2.90
2832 3220 1.659233 CACACCCGTGGTACGTACA 59.341 57.895 26.02 10.47 40.58 2.90
2833 3221 1.734117 GCACACCCGTGGTACGTAC 60.734 63.158 17.56 17.56 43.81 3.67
2834 3222 2.650196 GCACACCCGTGGTACGTA 59.350 61.111 0.00 0.00 43.81 3.57
2835 3223 4.651008 CGCACACCCGTGGTACGT 62.651 66.667 0.00 0.00 43.81 3.57
2854 3242 0.042535 TGTTATAAATCAGCGCGCGC 60.043 50.000 45.10 45.10 42.33 6.86
2855 3243 2.361094 TTGTTATAAATCAGCGCGCG 57.639 45.000 28.44 28.44 0.00 6.86
2856 3244 4.278858 TGAATTGTTATAAATCAGCGCGC 58.721 39.130 26.66 26.66 0.00 6.86
2857 3245 6.974677 AATGAATTGTTATAAATCAGCGCG 57.025 33.333 0.00 0.00 0.00 6.86
2868 3256 8.137437 CCGGAGCAGAATTTAATGAATTGTTAT 58.863 33.333 0.00 0.00 38.06 1.89
2869 3257 7.416213 CCCGGAGCAGAATTTAATGAATTGTTA 60.416 37.037 0.73 0.00 38.06 2.41
2870 3258 6.332630 CCGGAGCAGAATTTAATGAATTGTT 58.667 36.000 0.00 0.00 38.06 2.83
2871 3259 5.163519 CCCGGAGCAGAATTTAATGAATTGT 60.164 40.000 0.73 0.00 38.06 2.71
2872 3260 5.284079 CCCGGAGCAGAATTTAATGAATTG 58.716 41.667 0.73 0.00 38.06 2.32
2873 3261 4.202151 GCCCGGAGCAGAATTTAATGAATT 60.202 41.667 0.73 0.00 42.97 2.17
2874 3262 3.319122 GCCCGGAGCAGAATTTAATGAAT 59.681 43.478 0.73 0.00 42.97 2.57
2875 3263 2.687935 GCCCGGAGCAGAATTTAATGAA 59.312 45.455 0.73 0.00 42.97 2.57
2876 3264 2.297701 GCCCGGAGCAGAATTTAATGA 58.702 47.619 0.73 0.00 42.97 2.57
2877 3265 2.781945 GCCCGGAGCAGAATTTAATG 57.218 50.000 0.73 0.00 42.97 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.