Multiple sequence alignment - TraesCS5D01G015200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G015200 chr5D 100.000 3179 0 0 1 3179 8640463 8643641 0.000000e+00 5871.0
1 TraesCS5D01G015200 chr5A 90.856 1542 67 31 696 2187 6797883 6799400 0.000000e+00 1999.0
2 TraesCS5D01G015200 chr5A 84.825 257 14 14 453 690 6797545 6797795 5.300000e-58 235.0
3 TraesCS5D01G015200 chr5A 79.372 223 21 15 10 214 6797091 6797306 1.990000e-27 134.0
4 TraesCS5D01G015200 chr5A 98.214 56 1 0 281 336 6797331 6797386 7.260000e-17 99.0
5 TraesCS5D01G015200 chr5B 90.596 1393 56 25 737 2072 8944836 8946210 0.000000e+00 1777.0
6 TraesCS5D01G015200 chr5B 91.542 733 39 12 2469 3179 8946206 8946937 0.000000e+00 989.0
7 TraesCS5D01G015200 chr5B 81.743 241 20 12 277 509 8944416 8944640 2.520000e-41 180.0
8 TraesCS5D01G015200 chr5B 89.796 98 4 2 506 603 8937890 8937981 1.550000e-23 121.0
9 TraesCS5D01G015200 chr5B 90.278 72 6 1 10 80 8943787 8943858 3.380000e-15 93.5
10 TraesCS5D01G015200 chr1D 98.879 446 4 1 1586 2030 453606432 453605987 0.000000e+00 795.0
11 TraesCS5D01G015200 chr4D 98.427 445 7 0 1586 2030 475745960 475746404 0.000000e+00 784.0
12 TraesCS5D01G015200 chr7D 97.849 279 6 0 1586 1864 634158546 634158824 1.710000e-132 483.0
13 TraesCS5D01G015200 chr1B 87.339 387 48 1 1108 1494 30677934 30677549 2.910000e-120 442.0
14 TraesCS5D01G015200 chr2B 86.923 390 44 6 1108 1494 676736874 676736489 6.300000e-117 431.0
15 TraesCS5D01G015200 chr2B 83.058 484 35 25 771 1233 751314258 751313801 2.300000e-106 396.0
16 TraesCS5D01G015200 chr2B 85.714 196 8 4 506 689 751314614 751314427 4.190000e-44 189.0
17 TraesCS5D01G015200 chr2B 95.588 68 2 1 442 509 751314720 751314654 1.210000e-19 108.0
18 TraesCS5D01G015200 chr1A 86.189 391 49 2 1108 1494 343756633 343757022 4.900000e-113 418.0
19 TraesCS5D01G015200 chr3D 80.882 136 3 9 824 958 253665738 253665625 5.650000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G015200 chr5D 8640463 8643641 3178 False 5871.000 5871 100.00000 1 3179 1 chr5D.!!$F1 3178
1 TraesCS5D01G015200 chr5A 6797091 6799400 2309 False 616.750 1999 88.31675 10 2187 4 chr5A.!!$F1 2177
2 TraesCS5D01G015200 chr5B 8943787 8946937 3150 False 759.875 1777 88.53975 10 3179 4 chr5B.!!$F2 3169
3 TraesCS5D01G015200 chr2B 751313801 751314720 919 True 231.000 396 88.12000 442 1233 3 chr2B.!!$R2 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 1342 0.31812 CCCCCTTGCAATGAACACAC 59.682 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2279 3029 0.032952 TGAACCTCGAAACACCTCGG 59.967 55.0 0.0 0.0 39.35 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 84 2.361094 TTGTTATAAATCAGCGCGCG 57.639 45.000 28.44 28.44 0.00 6.86
137 454 1.600916 GCTCCCAGACCAAGCGTTT 60.601 57.895 0.00 0.00 0.00 3.60
187 516 1.811266 CCACGGCATGTTCTCTCCG 60.811 63.158 5.75 5.75 46.61 4.63
209 538 5.512788 CCGTTTTAATTACTGCTGCTTCATG 59.487 40.000 0.00 0.00 0.00 3.07
236 565 1.730902 CACAGACAGTGTCGAGGCG 60.731 63.158 17.40 7.69 43.40 5.52
238 567 1.154131 CAGACAGTGTCGAGGCGAG 60.154 63.158 17.40 0.06 36.23 5.03
265 598 3.866582 CATGGACGCCTCCCCTCC 61.867 72.222 0.00 0.00 35.34 4.30
345 716 3.680525 CGTGAGCGTCATTCCTCG 58.319 61.111 0.00 0.00 0.00 4.63
397 860 0.673644 ACCAGAAAACGGAGCCATCG 60.674 55.000 0.00 0.00 0.00 3.84
431 896 1.402194 GCTCCGTGTCTGTCTTCTCTG 60.402 57.143 0.00 0.00 0.00 3.35
433 898 1.609072 TCCGTGTCTGTCTTCTCTGTG 59.391 52.381 0.00 0.00 0.00 3.66
434 899 1.413382 CGTGTCTGTCTTCTCTGTGC 58.587 55.000 0.00 0.00 0.00 4.57
435 900 1.269257 CGTGTCTGTCTTCTCTGTGCA 60.269 52.381 0.00 0.00 0.00 4.57
436 901 2.131183 GTGTCTGTCTTCTCTGTGCAC 58.869 52.381 10.75 10.75 0.00 4.57
437 902 1.269257 TGTCTGTCTTCTCTGTGCACG 60.269 52.381 13.13 7.36 0.00 5.34
438 903 0.319040 TCTGTCTTCTCTGTGCACGC 60.319 55.000 13.13 0.00 0.00 5.34
439 904 0.598419 CTGTCTTCTCTGTGCACGCA 60.598 55.000 13.13 0.00 0.00 5.24
440 905 0.875908 TGTCTTCTCTGTGCACGCAC 60.876 55.000 15.20 15.20 46.33 5.34
567 1100 2.717580 TACGCGTCTGTTCATCACTT 57.282 45.000 18.63 0.00 0.00 3.16
568 1101 1.419374 ACGCGTCTGTTCATCACTTC 58.581 50.000 5.58 0.00 0.00 3.01
569 1102 1.269569 ACGCGTCTGTTCATCACTTCA 60.270 47.619 5.58 0.00 0.00 3.02
570 1103 1.125021 CGCGTCTGTTCATCACTTCAC 59.875 52.381 0.00 0.00 0.00 3.18
571 1104 2.408050 GCGTCTGTTCATCACTTCACT 58.592 47.619 0.00 0.00 0.00 3.41
584 1117 1.476488 ACTTCACTTGTTTGGTGGCAC 59.524 47.619 9.70 9.70 35.61 5.01
605 1138 0.321298 TCAACAGCGCCCCTTTACTC 60.321 55.000 2.29 0.00 0.00 2.59
644 1177 6.239064 GCACACTAGCTAGTATGGTCTGTAAT 60.239 42.308 28.62 0.40 31.60 1.89
645 1178 7.040617 GCACACTAGCTAGTATGGTCTGTAATA 60.041 40.741 28.62 0.00 31.60 0.98
646 1179 8.847196 CACACTAGCTAGTATGGTCTGTAATAA 58.153 37.037 25.63 0.00 34.13 1.40
647 1180 9.589461 ACACTAGCTAGTATGGTCTGTAATAAT 57.411 33.333 25.63 0.00 34.13 1.28
690 1223 0.459489 TGTTCAGGCCAACAAACAGC 59.541 50.000 5.01 0.00 33.21 4.40
691 1224 0.594796 GTTCAGGCCAACAAACAGCG 60.595 55.000 5.01 0.00 0.00 5.18
692 1225 2.348605 TTCAGGCCAACAAACAGCGC 62.349 55.000 5.01 0.00 0.00 5.92
693 1226 3.605664 AGGCCAACAAACAGCGCC 61.606 61.111 5.01 0.00 40.03 6.53
713 1342 0.318120 CCCCCTTGCAATGAACACAC 59.682 55.000 0.00 0.00 0.00 3.82
727 1356 4.482386 TGAACACACGAACAGAGTATAGC 58.518 43.478 0.00 0.00 0.00 2.97
730 1359 4.486090 ACACACGAACAGAGTATAGCAAG 58.514 43.478 0.00 0.00 0.00 4.01
732 1361 3.193691 ACACGAACAGAGTATAGCAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
734 1363 5.105877 ACACGAACAGAGTATAGCAAGCTAA 60.106 40.000 5.81 0.00 31.73 3.09
756 1401 2.032528 CAGCAGCAGGGGTTCGAA 59.967 61.111 0.00 0.00 0.00 3.71
772 1417 1.377229 GAACCAATCGTCCACCCCA 59.623 57.895 0.00 0.00 0.00 4.96
774 1419 2.435938 CCAATCGTCCACCCCACG 60.436 66.667 0.00 0.00 38.67 4.94
775 1420 3.124921 CAATCGTCCACCCCACGC 61.125 66.667 0.00 0.00 37.18 5.34
776 1421 4.752879 AATCGTCCACCCCACGCG 62.753 66.667 3.53 3.53 37.18 6.01
922 1622 2.189499 GGGATGCCAGATGCCGAAC 61.189 63.158 0.00 0.00 40.16 3.95
960 1673 4.156190 CGGCCTCTACCTATATGTACAGTG 59.844 50.000 0.00 0.00 0.00 3.66
987 1700 7.921214 CACCAATGGATTGTACTACAGTAGTAG 59.079 40.741 19.16 7.87 41.59 2.57
988 1701 7.618512 ACCAATGGATTGTACTACAGTAGTAGT 59.381 37.037 19.16 12.85 46.19 2.73
1062 1785 7.796054 TCCTTCTTCTTCTTCTTCTTCTTCAA 58.204 34.615 0.00 0.00 0.00 2.69
1068 1800 1.466558 CTTCTTCTTCTTCAAGGCGGC 59.533 52.381 0.00 0.00 0.00 6.53
1435 2167 0.605589 AGAACTCGAGCCACAGGAAG 59.394 55.000 13.61 0.00 0.00 3.46
1573 2305 3.181967 CAGAAGAAGACGCGGCCG 61.182 66.667 24.05 24.05 41.14 6.13
2076 2811 1.202582 CTCCTCTCGTTTGTCGGTCAT 59.797 52.381 0.00 0.00 40.32 3.06
2077 2812 1.201647 TCCTCTCGTTTGTCGGTCATC 59.798 52.381 0.00 0.00 40.32 2.92
2078 2813 1.067846 CCTCTCGTTTGTCGGTCATCA 60.068 52.381 0.00 0.00 40.32 3.07
2080 2815 2.854777 CTCTCGTTTGTCGGTCATCATC 59.145 50.000 0.00 0.00 40.32 2.92
2081 2816 2.492088 TCTCGTTTGTCGGTCATCATCT 59.508 45.455 0.00 0.00 40.32 2.90
2082 2817 3.056821 TCTCGTTTGTCGGTCATCATCTT 60.057 43.478 0.00 0.00 40.32 2.40
2083 2818 2.993220 TCGTTTGTCGGTCATCATCTTG 59.007 45.455 0.00 0.00 40.32 3.02
2086 2821 2.385013 TGTCGGTCATCATCTTGGTG 57.615 50.000 0.00 0.00 0.00 4.17
2100 2835 1.843421 TGGTGGACCAGGTCAAAGG 59.157 57.895 21.75 0.00 42.01 3.11
2101 2836 1.074951 GGTGGACCAGGTCAAAGGG 59.925 63.158 21.75 0.00 33.68 3.95
2102 2837 1.603739 GTGGACCAGGTCAAAGGGC 60.604 63.158 21.75 3.14 33.68 5.19
2103 2838 2.081787 TGGACCAGGTCAAAGGGCA 61.082 57.895 21.75 5.91 33.29 5.36
2105 2840 1.303643 GACCAGGTCAAAGGGCAGG 60.304 63.158 15.43 0.00 31.39 4.85
2106 2841 2.677875 CCAGGTCAAAGGGCAGGC 60.678 66.667 0.00 0.00 0.00 4.85
2108 2843 2.116125 AGGTCAAAGGGCAGGCAC 59.884 61.111 0.00 0.00 0.00 5.01
2109 2844 2.203480 GGTCAAAGGGCAGGCACA 60.203 61.111 0.00 0.00 0.00 4.57
2110 2845 1.607467 GGTCAAAGGGCAGGCACAT 60.607 57.895 0.00 0.00 0.00 3.21
2111 2846 1.598701 GGTCAAAGGGCAGGCACATC 61.599 60.000 0.00 0.00 0.00 3.06
2112 2847 0.610232 GTCAAAGGGCAGGCACATCT 60.610 55.000 0.00 0.00 0.00 2.90
2113 2848 0.991146 TCAAAGGGCAGGCACATCTA 59.009 50.000 0.00 0.00 0.00 1.98
2114 2849 1.098050 CAAAGGGCAGGCACATCTAC 58.902 55.000 0.00 0.00 0.00 2.59
2115 2850 0.034089 AAAGGGCAGGCACATCTACC 60.034 55.000 0.00 0.00 0.00 3.18
2116 2851 0.916358 AAGGGCAGGCACATCTACCT 60.916 55.000 0.00 0.00 36.45 3.08
2124 2859 1.153086 CACATCTACCTGGCCCAGC 60.153 63.158 4.81 0.00 0.00 4.85
2174 2924 5.119125 GCCCTGCGATATTTTTGAAATATGC 59.881 40.000 9.86 12.46 0.00 3.14
2175 2925 6.215121 CCCTGCGATATTTTTGAAATATGCA 58.785 36.000 18.34 18.34 31.94 3.96
2178 2928 9.409312 CCTGCGATATTTTTGAAATATGCATAA 57.591 29.630 11.13 0.00 32.17 1.90
2187 2937 8.839947 TTTTGAAATATGCATAATGTCACTCG 57.160 30.769 11.13 0.00 0.00 4.18
2188 2938 7.552458 TTGAAATATGCATAATGTCACTCGT 57.448 32.000 11.13 0.00 0.00 4.18
2189 2939 7.552458 TGAAATATGCATAATGTCACTCGTT 57.448 32.000 11.13 0.00 0.00 3.85
2190 2940 7.408910 TGAAATATGCATAATGTCACTCGTTG 58.591 34.615 11.13 0.00 0.00 4.10
2191 2941 5.929697 ATATGCATAATGTCACTCGTTGG 57.070 39.130 11.13 0.00 0.00 3.77
2192 2942 3.052455 TGCATAATGTCACTCGTTGGT 57.948 42.857 0.00 0.00 0.00 3.67
2193 2943 2.741517 TGCATAATGTCACTCGTTGGTG 59.258 45.455 0.00 0.00 38.44 4.17
2194 2944 2.476185 GCATAATGTCACTCGTTGGTGC 60.476 50.000 0.00 0.00 37.16 5.01
2195 2945 1.424403 TAATGTCACTCGTTGGTGCG 58.576 50.000 0.00 0.00 37.16 5.34
2196 2946 0.249699 AATGTCACTCGTTGGTGCGA 60.250 50.000 0.00 0.00 37.16 5.10
2197 2947 0.249699 ATGTCACTCGTTGGTGCGAA 60.250 50.000 0.00 0.00 40.57 4.70
2198 2948 0.460459 TGTCACTCGTTGGTGCGAAA 60.460 50.000 0.00 0.00 40.57 3.46
2199 2949 0.653636 GTCACTCGTTGGTGCGAAAA 59.346 50.000 0.00 0.00 40.57 2.29
2200 2950 0.934496 TCACTCGTTGGTGCGAAAAG 59.066 50.000 0.00 0.00 40.57 2.27
2201 2951 0.934496 CACTCGTTGGTGCGAAAAGA 59.066 50.000 0.00 0.00 40.57 2.52
2202 2952 1.329292 CACTCGTTGGTGCGAAAAGAA 59.671 47.619 0.00 0.00 40.57 2.52
2203 2953 1.597663 ACTCGTTGGTGCGAAAAGAAG 59.402 47.619 0.00 0.00 40.57 2.85
2204 2954 1.864711 CTCGTTGGTGCGAAAAGAAGA 59.135 47.619 0.00 0.00 40.57 2.87
2205 2955 2.480419 CTCGTTGGTGCGAAAAGAAGAT 59.520 45.455 0.00 0.00 40.57 2.40
2206 2956 2.478894 TCGTTGGTGCGAAAAGAAGATC 59.521 45.455 0.00 0.00 37.99 2.75
2207 2957 2.480419 CGTTGGTGCGAAAAGAAGATCT 59.520 45.455 0.00 0.00 0.00 2.75
2208 2958 3.665323 CGTTGGTGCGAAAAGAAGATCTG 60.665 47.826 0.00 0.00 0.00 2.90
2209 2959 3.401033 TGGTGCGAAAAGAAGATCTGA 57.599 42.857 0.00 0.00 0.00 3.27
2210 2960 3.329386 TGGTGCGAAAAGAAGATCTGAG 58.671 45.455 0.00 0.00 0.00 3.35
2211 2961 3.244215 TGGTGCGAAAAGAAGATCTGAGT 60.244 43.478 0.00 0.00 0.00 3.41
2212 2962 4.021456 TGGTGCGAAAAGAAGATCTGAGTA 60.021 41.667 0.00 0.00 0.00 2.59
2213 2963 4.327627 GGTGCGAAAAGAAGATCTGAGTAC 59.672 45.833 0.00 0.00 0.00 2.73
2214 2964 4.923871 GTGCGAAAAGAAGATCTGAGTACA 59.076 41.667 0.00 0.00 0.00 2.90
2215 2965 5.405571 GTGCGAAAAGAAGATCTGAGTACAA 59.594 40.000 0.00 0.00 0.00 2.41
2216 2966 5.989168 TGCGAAAAGAAGATCTGAGTACAAA 59.011 36.000 0.00 0.00 0.00 2.83
2217 2967 6.650807 TGCGAAAAGAAGATCTGAGTACAAAT 59.349 34.615 0.00 0.00 0.00 2.32
2218 2968 7.173218 TGCGAAAAGAAGATCTGAGTACAAATT 59.827 33.333 0.00 0.00 0.00 1.82
2219 2969 8.017946 GCGAAAAGAAGATCTGAGTACAAATTT 58.982 33.333 0.00 0.00 0.00 1.82
2246 2996 4.662859 GTGCGAACACACACACAC 57.337 55.556 0.00 0.00 46.61 3.82
2247 2997 1.791024 GTGCGAACACACACACACA 59.209 52.632 0.00 0.00 46.61 3.72
2248 2998 0.520412 GTGCGAACACACACACACAC 60.520 55.000 0.00 0.00 46.61 3.82
2249 2999 0.951040 TGCGAACACACACACACACA 60.951 50.000 0.00 0.00 0.00 3.72
2250 3000 0.520412 GCGAACACACACACACACAC 60.520 55.000 0.00 0.00 0.00 3.82
2251 3001 0.793250 CGAACACACACACACACACA 59.207 50.000 0.00 0.00 0.00 3.72
2252 3002 1.463363 CGAACACACACACACACACAC 60.463 52.381 0.00 0.00 0.00 3.82
2253 3003 1.533299 GAACACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
2254 3004 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2255 3005 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
2256 3006 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
2257 3007 2.395360 ACACACACACACACACGCC 61.395 57.895 0.00 0.00 0.00 5.68
2258 3008 3.192230 ACACACACACACACGCCG 61.192 61.111 0.00 0.00 0.00 6.46
2259 3009 2.888051 CACACACACACACGCCGA 60.888 61.111 0.00 0.00 0.00 5.54
2260 3010 2.584970 ACACACACACACGCCGAG 60.585 61.111 0.00 0.00 0.00 4.63
2261 3011 2.279186 CACACACACACGCCGAGA 60.279 61.111 0.00 0.00 0.00 4.04
2262 3012 1.880796 CACACACACACGCCGAGAA 60.881 57.895 0.00 0.00 0.00 2.87
2263 3013 1.591594 ACACACACACGCCGAGAAG 60.592 57.895 0.00 0.00 0.00 2.85
2264 3014 2.029073 ACACACACGCCGAGAAGG 59.971 61.111 0.00 0.00 44.97 3.46
2265 3015 2.738521 CACACACGCCGAGAAGGG 60.739 66.667 0.00 0.00 41.48 3.95
2266 3016 3.231736 ACACACGCCGAGAAGGGT 61.232 61.111 0.00 0.00 41.48 4.34
2267 3017 2.030562 CACACGCCGAGAAGGGTT 59.969 61.111 0.00 0.00 41.48 4.11
2268 3018 2.030562 ACACGCCGAGAAGGGTTG 59.969 61.111 0.00 0.00 41.48 3.77
2269 3019 2.342279 CACGCCGAGAAGGGTTGA 59.658 61.111 0.00 0.00 41.48 3.18
2270 3020 1.301401 CACGCCGAGAAGGGTTGAA 60.301 57.895 0.00 0.00 41.48 2.69
2271 3021 0.673644 CACGCCGAGAAGGGTTGAAT 60.674 55.000 0.00 0.00 41.48 2.57
2272 3022 0.673644 ACGCCGAGAAGGGTTGAATG 60.674 55.000 0.00 0.00 41.48 2.67
2273 3023 1.803289 GCCGAGAAGGGTTGAATGC 59.197 57.895 0.00 0.00 41.48 3.56
2274 3024 1.657751 GCCGAGAAGGGTTGAATGCC 61.658 60.000 0.00 0.00 41.48 4.40
2275 3025 1.369091 CCGAGAAGGGTTGAATGCCG 61.369 60.000 0.00 0.00 35.97 5.69
2276 3026 1.369091 CGAGAAGGGTTGAATGCCGG 61.369 60.000 0.00 0.00 0.00 6.13
2277 3027 0.035439 GAGAAGGGTTGAATGCCGGA 60.035 55.000 5.05 0.00 0.00 5.14
2278 3028 0.035056 AGAAGGGTTGAATGCCGGAG 60.035 55.000 5.05 0.00 0.00 4.63
2279 3029 1.657751 GAAGGGTTGAATGCCGGAGC 61.658 60.000 5.05 0.00 40.48 4.70
2280 3030 3.140814 GGGTTGAATGCCGGAGCC 61.141 66.667 5.05 0.00 38.69 4.70
2281 3031 3.508840 GGTTGAATGCCGGAGCCG 61.509 66.667 5.05 1.06 38.69 5.52
2282 3032 2.435938 GTTGAATGCCGGAGCCGA 60.436 61.111 5.05 0.00 42.83 5.54
2283 3033 2.125147 TTGAATGCCGGAGCCGAG 60.125 61.111 5.05 1.79 42.83 4.63
2284 3034 3.680620 TTGAATGCCGGAGCCGAGG 62.681 63.158 5.05 0.00 42.83 4.63
2285 3035 4.162690 GAATGCCGGAGCCGAGGT 62.163 66.667 5.05 0.00 42.83 3.85
2286 3036 4.473520 AATGCCGGAGCCGAGGTG 62.474 66.667 5.05 0.00 42.83 4.00
2289 3039 4.699522 GCCGGAGCCGAGGTGTTT 62.700 66.667 5.05 0.00 42.83 2.83
2290 3040 2.434359 CCGGAGCCGAGGTGTTTC 60.434 66.667 11.05 0.00 42.83 2.78
2291 3041 2.809601 CGGAGCCGAGGTGTTTCG 60.810 66.667 2.00 0.00 42.83 3.46
2292 3042 2.654877 GGAGCCGAGGTGTTTCGA 59.345 61.111 0.00 0.00 43.03 3.71
2293 3043 1.446272 GGAGCCGAGGTGTTTCGAG 60.446 63.158 0.00 0.00 43.03 4.04
2294 3044 1.446272 GAGCCGAGGTGTTTCGAGG 60.446 63.158 0.00 0.00 43.03 4.63
2295 3045 2.156051 GAGCCGAGGTGTTTCGAGGT 62.156 60.000 0.00 0.00 43.03 3.85
2296 3046 1.301479 GCCGAGGTGTTTCGAGGTT 60.301 57.895 0.00 0.00 43.03 3.50
2297 3047 1.289800 GCCGAGGTGTTTCGAGGTTC 61.290 60.000 0.00 0.00 43.03 3.62
2298 3048 0.032952 CCGAGGTGTTTCGAGGTTCA 59.967 55.000 0.00 0.00 43.03 3.18
2299 3049 1.337823 CCGAGGTGTTTCGAGGTTCAT 60.338 52.381 0.00 0.00 43.03 2.57
2300 3050 1.726791 CGAGGTGTTTCGAGGTTCATG 59.273 52.381 0.00 0.00 43.03 3.07
2301 3051 2.076863 GAGGTGTTTCGAGGTTCATGG 58.923 52.381 0.00 0.00 0.00 3.66
2302 3052 1.697432 AGGTGTTTCGAGGTTCATGGA 59.303 47.619 0.00 0.00 0.00 3.41
2303 3053 2.076863 GGTGTTTCGAGGTTCATGGAG 58.923 52.381 0.00 0.00 0.00 3.86
2304 3054 1.464997 GTGTTTCGAGGTTCATGGAGC 59.535 52.381 0.00 0.00 0.00 4.70
2305 3055 1.087501 GTTTCGAGGTTCATGGAGCC 58.912 55.000 0.00 0.00 32.98 4.70
2306 3056 0.690192 TTTCGAGGTTCATGGAGCCA 59.310 50.000 0.00 0.00 35.33 4.75
2307 3057 0.911769 TTCGAGGTTCATGGAGCCAT 59.088 50.000 0.00 0.00 35.33 4.40
2308 3058 0.465705 TCGAGGTTCATGGAGCCATC 59.534 55.000 0.00 0.00 35.33 3.51
2309 3059 0.178767 CGAGGTTCATGGAGCCATCA 59.821 55.000 0.00 0.00 35.33 3.07
2310 3060 1.202734 CGAGGTTCATGGAGCCATCAT 60.203 52.381 0.00 0.00 35.33 2.45
2311 3061 2.037641 CGAGGTTCATGGAGCCATCATA 59.962 50.000 0.00 0.00 35.33 2.15
2312 3062 3.672808 GAGGTTCATGGAGCCATCATAG 58.327 50.000 0.00 0.00 35.33 2.23
2313 3063 3.051581 AGGTTCATGGAGCCATCATAGT 58.948 45.455 0.00 0.00 35.33 2.12
2314 3064 3.072184 AGGTTCATGGAGCCATCATAGTC 59.928 47.826 0.00 0.00 35.33 2.59
2315 3065 3.062763 GTTCATGGAGCCATCATAGTCG 58.937 50.000 0.00 0.00 33.90 4.18
2316 3066 1.001293 TCATGGAGCCATCATAGTCGC 59.999 52.381 0.00 0.00 33.90 5.19
2317 3067 1.051008 ATGGAGCCATCATAGTCGCA 58.949 50.000 0.00 0.00 29.42 5.10
2318 3068 1.051008 TGGAGCCATCATAGTCGCAT 58.949 50.000 0.00 0.00 0.00 4.73
2319 3069 1.001293 TGGAGCCATCATAGTCGCATC 59.999 52.381 0.00 0.00 0.00 3.91
2320 3070 1.344458 GAGCCATCATAGTCGCATCG 58.656 55.000 0.00 0.00 0.00 3.84
2321 3071 0.668706 AGCCATCATAGTCGCATCGC 60.669 55.000 0.00 0.00 0.00 4.58
2322 3072 0.668706 GCCATCATAGTCGCATCGCT 60.669 55.000 0.00 0.00 0.00 4.93
2323 3073 1.402852 GCCATCATAGTCGCATCGCTA 60.403 52.381 0.00 0.00 0.00 4.26
2324 3074 2.736719 GCCATCATAGTCGCATCGCTAT 60.737 50.000 0.00 0.00 30.82 2.97
2325 3075 3.111838 CCATCATAGTCGCATCGCTATC 58.888 50.000 0.00 0.00 29.29 2.08
2326 3076 2.527442 TCATAGTCGCATCGCTATCG 57.473 50.000 0.00 0.00 29.29 2.92
2353 3103 8.049655 TGGAAACATGTGAAATCATATTTCGA 57.950 30.769 0.00 0.00 40.18 3.71
2354 3104 8.685427 TGGAAACATGTGAAATCATATTTCGAT 58.315 29.630 0.00 1.12 40.18 3.59
2355 3105 8.961092 GGAAACATGTGAAATCATATTTCGATG 58.039 33.333 0.00 15.65 40.18 3.84
2356 3106 7.919313 AACATGTGAAATCATATTTCGATGC 57.081 32.000 0.00 6.61 30.34 3.91
2357 3107 6.441274 ACATGTGAAATCATATTTCGATGCC 58.559 36.000 16.46 3.45 30.34 4.40
2358 3108 6.039605 ACATGTGAAATCATATTTCGATGCCA 59.960 34.615 16.46 7.16 30.34 4.92
2359 3109 5.820131 TGTGAAATCATATTTCGATGCCAC 58.180 37.500 7.63 0.00 31.75 5.01
2360 3110 5.356470 TGTGAAATCATATTTCGATGCCACA 59.644 36.000 7.63 0.00 35.48 4.17
2361 3111 6.127786 TGTGAAATCATATTTCGATGCCACAA 60.128 34.615 7.63 0.00 35.20 3.33
2362 3112 6.415867 GTGAAATCATATTTCGATGCCACAAG 59.584 38.462 7.63 0.00 31.59 3.16
2363 3113 6.318396 TGAAATCATATTTCGATGCCACAAGA 59.682 34.615 7.63 0.00 0.00 3.02
2364 3114 6.889301 AATCATATTTCGATGCCACAAGAT 57.111 33.333 0.00 0.00 0.00 2.40
2365 3115 5.678132 TCATATTTCGATGCCACAAGATG 57.322 39.130 0.00 0.00 0.00 2.90
2366 3116 5.125356 TCATATTTCGATGCCACAAGATGT 58.875 37.500 0.00 0.00 0.00 3.06
2367 3117 6.287525 TCATATTTCGATGCCACAAGATGTA 58.712 36.000 0.00 0.00 0.00 2.29
2368 3118 6.765512 TCATATTTCGATGCCACAAGATGTAA 59.234 34.615 0.00 0.00 0.00 2.41
2369 3119 5.895636 ATTTCGATGCCACAAGATGTAAA 57.104 34.783 0.00 0.00 0.00 2.01
2370 3120 5.895636 TTTCGATGCCACAAGATGTAAAT 57.104 34.783 0.00 0.00 0.00 1.40
2371 3121 4.880886 TCGATGCCACAAGATGTAAATG 57.119 40.909 0.00 0.00 0.00 2.32
2372 3122 3.627123 TCGATGCCACAAGATGTAAATGG 59.373 43.478 0.00 0.00 0.00 3.16
2374 3124 2.193306 GCCACAAGATGTAAATGGCG 57.807 50.000 0.00 0.00 45.85 5.69
2375 3125 1.798813 GCCACAAGATGTAAATGGCGC 60.799 52.381 0.00 0.00 45.85 6.53
2376 3126 1.472082 CCACAAGATGTAAATGGCGCA 59.528 47.619 10.83 0.00 0.00 6.09
2377 3127 2.094803 CCACAAGATGTAAATGGCGCAA 60.095 45.455 10.83 0.00 0.00 4.85
2378 3128 3.573598 CACAAGATGTAAATGGCGCAAA 58.426 40.909 10.83 0.00 0.00 3.68
2379 3129 3.986572 CACAAGATGTAAATGGCGCAAAA 59.013 39.130 10.83 0.00 0.00 2.44
2380 3130 3.987220 ACAAGATGTAAATGGCGCAAAAC 59.013 39.130 10.83 0.00 0.00 2.43
2381 3131 4.236935 CAAGATGTAAATGGCGCAAAACT 58.763 39.130 10.83 0.00 0.00 2.66
2382 3132 4.096732 AGATGTAAATGGCGCAAAACTC 57.903 40.909 10.83 0.00 0.00 3.01
2383 3133 3.505680 AGATGTAAATGGCGCAAAACTCA 59.494 39.130 10.83 1.50 0.00 3.41
2384 3134 3.281341 TGTAAATGGCGCAAAACTCAG 57.719 42.857 10.83 0.00 0.00 3.35
2385 3135 2.621055 TGTAAATGGCGCAAAACTCAGT 59.379 40.909 10.83 0.00 0.00 3.41
2386 3136 2.138596 AAATGGCGCAAAACTCAGTG 57.861 45.000 10.83 0.00 0.00 3.66
2387 3137 0.318955 AATGGCGCAAAACTCAGTGC 60.319 50.000 10.83 0.00 40.36 4.40
2388 3138 1.174712 ATGGCGCAAAACTCAGTGCT 61.175 50.000 10.83 0.00 40.86 4.40
2389 3139 1.360192 GGCGCAAAACTCAGTGCTT 59.640 52.632 10.83 0.00 40.86 3.91
2390 3140 0.936297 GGCGCAAAACTCAGTGCTTG 60.936 55.000 10.83 0.00 40.86 4.01
2391 3141 0.936297 GCGCAAAACTCAGTGCTTGG 60.936 55.000 0.30 0.00 38.66 3.61
2392 3142 0.381801 CGCAAAACTCAGTGCTTGGT 59.618 50.000 2.82 0.00 38.66 3.67
2393 3143 1.597937 CGCAAAACTCAGTGCTTGGTC 60.598 52.381 2.82 0.00 38.66 4.02
2394 3144 1.597937 GCAAAACTCAGTGCTTGGTCG 60.598 52.381 2.82 0.00 37.78 4.79
2395 3145 1.002468 CAAAACTCAGTGCTTGGTCGG 60.002 52.381 0.00 0.00 0.00 4.79
2396 3146 0.180406 AAACTCAGTGCTTGGTCGGT 59.820 50.000 0.00 0.00 0.00 4.69
2397 3147 0.532862 AACTCAGTGCTTGGTCGGTG 60.533 55.000 0.00 0.00 0.00 4.94
2398 3148 1.669115 CTCAGTGCTTGGTCGGTGG 60.669 63.158 0.00 0.00 0.00 4.61
2399 3149 2.111043 CAGTGCTTGGTCGGTGGT 59.889 61.111 0.00 0.00 0.00 4.16
2400 3150 1.961277 CAGTGCTTGGTCGGTGGTC 60.961 63.158 0.00 0.00 0.00 4.02
2401 3151 2.110213 GTGCTTGGTCGGTGGTCA 59.890 61.111 0.00 0.00 0.00 4.02
2402 3152 1.961277 GTGCTTGGTCGGTGGTCAG 60.961 63.158 0.00 0.00 0.00 3.51
2403 3153 2.426023 GCTTGGTCGGTGGTCAGT 59.574 61.111 0.00 0.00 0.00 3.41
2404 3154 1.227853 GCTTGGTCGGTGGTCAGTT 60.228 57.895 0.00 0.00 0.00 3.16
2405 3155 1.507141 GCTTGGTCGGTGGTCAGTTG 61.507 60.000 0.00 0.00 0.00 3.16
2406 3156 0.179056 CTTGGTCGGTGGTCAGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
2407 3157 0.179067 TTGGTCGGTGGTCAGTTGTC 60.179 55.000 0.00 0.00 0.00 3.18
2408 3158 1.046472 TGGTCGGTGGTCAGTTGTCT 61.046 55.000 0.00 0.00 0.00 3.41
2409 3159 0.319641 GGTCGGTGGTCAGTTGTCTC 60.320 60.000 0.00 0.00 0.00 3.36
2410 3160 0.674534 GTCGGTGGTCAGTTGTCTCT 59.325 55.000 0.00 0.00 0.00 3.10
2411 3161 1.884579 GTCGGTGGTCAGTTGTCTCTA 59.115 52.381 0.00 0.00 0.00 2.43
2412 3162 2.295349 GTCGGTGGTCAGTTGTCTCTAA 59.705 50.000 0.00 0.00 0.00 2.10
2413 3163 2.960384 TCGGTGGTCAGTTGTCTCTAAA 59.040 45.455 0.00 0.00 0.00 1.85
2414 3164 3.057734 CGGTGGTCAGTTGTCTCTAAAC 58.942 50.000 0.00 0.00 0.00 2.01
2415 3165 3.057734 GGTGGTCAGTTGTCTCTAAACG 58.942 50.000 0.00 0.00 32.65 3.60
2416 3166 3.243636 GGTGGTCAGTTGTCTCTAAACGA 60.244 47.826 0.00 0.00 32.65 3.85
2417 3167 4.365723 GTGGTCAGTTGTCTCTAAACGAA 58.634 43.478 0.00 0.00 32.65 3.85
2418 3168 4.807304 GTGGTCAGTTGTCTCTAAACGAAA 59.193 41.667 0.00 0.00 32.65 3.46
2419 3169 5.465724 GTGGTCAGTTGTCTCTAAACGAAAT 59.534 40.000 0.00 0.00 32.65 2.17
2420 3170 6.643770 GTGGTCAGTTGTCTCTAAACGAAATA 59.356 38.462 0.00 0.00 32.65 1.40
2421 3171 6.643770 TGGTCAGTTGTCTCTAAACGAAATAC 59.356 38.462 0.00 0.00 32.65 1.89
2422 3172 6.867293 GGTCAGTTGTCTCTAAACGAAATACT 59.133 38.462 0.00 0.00 32.65 2.12
2423 3173 7.384387 GGTCAGTTGTCTCTAAACGAAATACTT 59.616 37.037 0.00 0.00 32.65 2.24
2424 3174 9.403110 GTCAGTTGTCTCTAAACGAAATACTTA 57.597 33.333 0.00 0.00 32.65 2.24
2425 3175 9.622004 TCAGTTGTCTCTAAACGAAATACTTAG 57.378 33.333 0.00 0.00 32.65 2.18
2426 3176 9.408069 CAGTTGTCTCTAAACGAAATACTTAGT 57.592 33.333 0.00 0.00 32.65 2.24
2427 3177 9.408069 AGTTGTCTCTAAACGAAATACTTAGTG 57.592 33.333 0.00 0.00 32.65 2.74
2428 3178 9.189723 GTTGTCTCTAAACGAAATACTTAGTGT 57.810 33.333 0.00 0.00 0.00 3.55
2429 3179 8.961294 TGTCTCTAAACGAAATACTTAGTGTC 57.039 34.615 0.00 0.00 0.00 3.67
2430 3180 8.025445 TGTCTCTAAACGAAATACTTAGTGTCC 58.975 37.037 0.00 0.00 0.00 4.02
2431 3181 8.242739 GTCTCTAAACGAAATACTTAGTGTCCT 58.757 37.037 0.00 0.00 0.00 3.85
2432 3182 8.242053 TCTCTAAACGAAATACTTAGTGTCCTG 58.758 37.037 0.00 0.00 0.00 3.86
2433 3183 7.318141 TCTAAACGAAATACTTAGTGTCCTGG 58.682 38.462 0.00 0.00 0.00 4.45
2434 3184 5.479124 AACGAAATACTTAGTGTCCTGGT 57.521 39.130 0.00 0.00 0.00 4.00
2435 3185 4.817517 ACGAAATACTTAGTGTCCTGGTG 58.182 43.478 0.00 0.00 0.00 4.17
2436 3186 3.617263 CGAAATACTTAGTGTCCTGGTGC 59.383 47.826 0.00 0.00 0.00 5.01
2437 3187 3.629142 AATACTTAGTGTCCTGGTGCC 57.371 47.619 0.00 0.00 0.00 5.01
2438 3188 2.320681 TACTTAGTGTCCTGGTGCCT 57.679 50.000 0.00 0.00 0.00 4.75
2439 3189 1.435256 ACTTAGTGTCCTGGTGCCTT 58.565 50.000 0.00 0.00 0.00 4.35
2440 3190 1.348036 ACTTAGTGTCCTGGTGCCTTC 59.652 52.381 0.00 0.00 0.00 3.46
2441 3191 1.347707 CTTAGTGTCCTGGTGCCTTCA 59.652 52.381 0.00 0.00 0.00 3.02
2442 3192 1.429930 TAGTGTCCTGGTGCCTTCAA 58.570 50.000 0.00 0.00 0.00 2.69
2443 3193 0.773644 AGTGTCCTGGTGCCTTCAAT 59.226 50.000 0.00 0.00 0.00 2.57
2444 3194 1.145738 AGTGTCCTGGTGCCTTCAATT 59.854 47.619 0.00 0.00 0.00 2.32
2445 3195 1.963515 GTGTCCTGGTGCCTTCAATTT 59.036 47.619 0.00 0.00 0.00 1.82
2446 3196 3.153919 GTGTCCTGGTGCCTTCAATTTA 58.846 45.455 0.00 0.00 0.00 1.40
2447 3197 3.057526 GTGTCCTGGTGCCTTCAATTTAC 60.058 47.826 0.00 0.00 0.00 2.01
2448 3198 2.492088 GTCCTGGTGCCTTCAATTTACC 59.508 50.000 0.00 0.00 0.00 2.85
2449 3199 2.109128 TCCTGGTGCCTTCAATTTACCA 59.891 45.455 0.00 0.00 38.98 3.25
2450 3200 2.896685 CCTGGTGCCTTCAATTTACCAA 59.103 45.455 0.00 0.00 40.58 3.67
2451 3201 3.323403 CCTGGTGCCTTCAATTTACCAAA 59.677 43.478 0.00 0.00 40.58 3.28
2452 3202 4.202305 CCTGGTGCCTTCAATTTACCAAAA 60.202 41.667 0.00 0.00 40.58 2.44
2453 3203 5.512921 CCTGGTGCCTTCAATTTACCAAAAT 60.513 40.000 0.00 0.00 40.58 1.82
2454 3204 5.546526 TGGTGCCTTCAATTTACCAAAATC 58.453 37.500 0.00 0.00 38.39 2.17
2455 3205 4.935205 GGTGCCTTCAATTTACCAAAATCC 59.065 41.667 0.00 0.00 34.12 3.01
2456 3206 5.512232 GGTGCCTTCAATTTACCAAAATCCA 60.512 40.000 0.00 0.00 34.12 3.41
2457 3207 5.994668 GTGCCTTCAATTTACCAAAATCCAA 59.005 36.000 0.00 0.00 34.12 3.53
2458 3208 6.484977 GTGCCTTCAATTTACCAAAATCCAAA 59.515 34.615 0.00 0.00 34.12 3.28
2459 3209 7.174772 GTGCCTTCAATTTACCAAAATCCAAAT 59.825 33.333 0.00 0.00 34.12 2.32
2460 3210 7.723172 TGCCTTCAATTTACCAAAATCCAAATT 59.277 29.630 0.00 0.00 34.12 1.82
2461 3211 8.022550 GCCTTCAATTTACCAAAATCCAAATTG 58.977 33.333 10.78 10.78 44.23 2.32
2462 3212 8.022550 CCTTCAATTTACCAAAATCCAAATTGC 58.977 33.333 11.77 0.00 43.30 3.56
2463 3213 7.446001 TCAATTTACCAAAATCCAAATTGCC 57.554 32.000 11.77 0.00 43.30 4.52
2464 3214 7.230027 TCAATTTACCAAAATCCAAATTGCCT 58.770 30.769 11.77 0.00 43.30 4.75
2465 3215 7.723172 TCAATTTACCAAAATCCAAATTGCCTT 59.277 29.630 11.77 0.00 43.30 4.35
2466 3216 6.874288 TTTACCAAAATCCAAATTGCCTTG 57.126 33.333 0.00 0.00 0.00 3.61
2467 3217 3.753815 ACCAAAATCCAAATTGCCTTGG 58.246 40.909 10.16 10.16 46.27 3.61
2468 3218 3.138098 ACCAAAATCCAAATTGCCTTGGT 59.862 39.130 11.08 11.08 45.29 3.67
2469 3219 3.502979 CCAAAATCCAAATTGCCTTGGTG 59.497 43.478 8.65 1.65 45.29 4.17
2470 3220 4.136051 CAAAATCCAAATTGCCTTGGTGT 58.864 39.130 8.65 0.00 45.29 4.16
2471 3221 4.436113 AAATCCAAATTGCCTTGGTGTT 57.564 36.364 8.65 4.11 45.29 3.32
2472 3222 2.906691 TCCAAATTGCCTTGGTGTTG 57.093 45.000 8.65 0.00 45.29 3.33
2500 3250 7.709269 ATTGCTTCATGTCATATTTTGCATC 57.291 32.000 0.00 0.00 0.00 3.91
2502 3252 6.631962 TGCTTCATGTCATATTTTGCATCAA 58.368 32.000 0.00 0.00 0.00 2.57
2540 3291 2.037772 CGATTATAGCAGGCTTGGACCT 59.962 50.000 0.00 0.00 42.30 3.85
2549 3300 0.690762 GGCTTGGACCTTGGACAGTA 59.309 55.000 0.00 0.00 0.00 2.74
2550 3301 1.282157 GGCTTGGACCTTGGACAGTAT 59.718 52.381 0.00 0.00 0.00 2.12
2553 3308 3.866651 CTTGGACCTTGGACAGTATGAG 58.133 50.000 0.00 0.00 39.69 2.90
2555 3310 1.134371 GGACCTTGGACAGTATGAGCC 60.134 57.143 0.00 0.00 39.69 4.70
2558 3313 0.179073 CTTGGACAGTATGAGCCGGG 60.179 60.000 2.18 0.00 39.69 5.73
2559 3314 2.109181 GGACAGTATGAGCCGGGC 59.891 66.667 12.11 12.11 39.69 6.13
2563 3318 0.753262 ACAGTATGAGCCGGGCTTAG 59.247 55.000 24.71 9.57 39.88 2.18
2632 3388 2.204090 GGGGAGGGGTGGTCTCAA 60.204 66.667 0.00 0.00 33.18 3.02
2646 3402 7.177744 GGGGTGGTCTCAATTTATTAACTTTGA 59.822 37.037 0.00 0.00 0.00 2.69
2740 3498 5.904362 AGAAGATGTATCTTTTTGGGTGC 57.096 39.130 8.41 0.00 46.47 5.01
2743 3501 4.273318 AGATGTATCTTTTTGGGTGCTCC 58.727 43.478 0.00 0.00 31.97 4.70
2804 3563 7.277174 ACAAAAGGACAAAGGTCTTTATCAG 57.723 36.000 4.44 0.00 41.89 2.90
2811 3570 8.153550 AGGACAAAGGTCTTTATCAGCATATAG 58.846 37.037 4.44 0.00 43.77 1.31
2830 3589 7.686127 GCATATAGACGAAAGGGAAAAGGTCTA 60.686 40.741 0.00 1.71 40.17 2.59
3002 3770 6.090223 CCAAGTTTATGCACGTATATATCGCA 59.910 38.462 0.00 6.25 36.95 5.10
3024 3792 2.287188 GCAACATGACAAGTGTCCACTG 60.287 50.000 8.91 6.60 44.15 3.66
3028 3796 3.213506 CATGACAAGTGTCCACTGGAAA 58.786 45.455 8.80 0.00 44.15 3.13
3082 3850 5.879223 ACAATTTCAGTTTGTTTTGCCATGA 59.121 32.000 0.00 0.00 33.64 3.07
3083 3851 6.373774 ACAATTTCAGTTTGTTTTGCCATGAA 59.626 30.769 0.00 0.00 33.64 2.57
3116 3884 4.227538 ACATTACTGTCGTCGTCTTTGAG 58.772 43.478 0.00 0.00 0.00 3.02
3124 3892 2.101917 TCGTCGTCTTTGAGGGAAAACT 59.898 45.455 0.00 0.00 0.00 2.66
3133 3901 8.135529 CGTCTTTGAGGGAAAACTAAAGAAATT 58.864 33.333 0.00 0.00 38.60 1.82
3138 3906 8.299990 TGAGGGAAAACTAAAGAAATTCACAA 57.700 30.769 0.00 0.00 0.00 3.33
3148 3920 7.942341 ACTAAAGAAATTCACAACATAGACCCA 59.058 33.333 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.609957 CAGGTGCTTCCATGCAAGGA 60.610 55.000 6.57 6.57 45.12 3.36
2 3 1.214589 GCAGGTGCTTCCATGCAAG 59.785 57.895 0.00 0.00 45.12 4.01
3 4 1.114119 TTGCAGGTGCTTCCATGCAA 61.114 50.000 21.03 21.03 46.86 4.08
4 5 1.531128 TTGCAGGTGCTTCCATGCA 60.531 52.632 15.27 15.27 43.28 3.96
5 6 1.080298 GTTGCAGGTGCTTCCATGC 60.080 57.895 3.18 12.12 42.66 4.06
6 7 1.210931 CGTTGCAGGTGCTTCCATG 59.789 57.895 3.18 0.00 42.66 3.66
7 8 2.629656 GCGTTGCAGGTGCTTCCAT 61.630 57.895 3.18 0.00 42.66 3.41
8 9 3.286751 GCGTTGCAGGTGCTTCCA 61.287 61.111 3.18 0.00 42.66 3.53
120 437 1.237285 CCAAACGCTTGGTCTGGGAG 61.237 60.000 9.51 0.00 46.25 4.30
132 449 4.038080 CGGAACCCAGCCAAACGC 62.038 66.667 0.00 0.00 37.98 4.84
133 450 3.361977 CCGGAACCCAGCCAAACG 61.362 66.667 0.00 0.00 0.00 3.60
134 451 3.680786 GCCGGAACCCAGCCAAAC 61.681 66.667 5.05 0.00 0.00 2.93
135 452 3.521765 ATGCCGGAACCCAGCCAAA 62.522 57.895 5.05 0.00 0.00 3.28
137 454 4.738998 CATGCCGGAACCCAGCCA 62.739 66.667 5.05 0.00 0.00 4.75
140 457 2.676121 TTGCATGCCGGAACCCAG 60.676 61.111 16.68 0.00 0.00 4.45
141 458 2.988684 GTTGCATGCCGGAACCCA 60.989 61.111 16.68 0.00 39.89 4.51
148 465 4.824166 GAGCTGCGTTGCATGCCG 62.824 66.667 16.68 13.70 38.13 5.69
187 516 6.308766 CACCATGAAGCAGCAGTAATTAAAAC 59.691 38.462 0.00 0.00 0.00 2.43
188 517 6.389091 CACCATGAAGCAGCAGTAATTAAAA 58.611 36.000 0.00 0.00 0.00 1.52
223 552 4.057428 GCCTCGCCTCGACACTGT 62.057 66.667 0.00 0.00 0.00 3.55
248 581 3.866582 GGAGGGGAGGCGTCCATG 61.867 72.222 25.86 0.00 46.07 3.66
262 595 4.933064 GCTGCGTCGATCCCGGAG 62.933 72.222 0.73 14.18 45.17 4.63
265 598 2.586079 ATTGCTGCGTCGATCCCG 60.586 61.111 0.00 0.00 37.07 5.14
266 599 2.537560 CCATTGCTGCGTCGATCCC 61.538 63.158 0.00 0.00 0.00 3.85
397 860 1.074752 CGGAGCACAAGAGAAGAAGC 58.925 55.000 0.00 0.00 0.00 3.86
401 864 1.000283 AGACACGGAGCACAAGAGAAG 60.000 52.381 0.00 0.00 0.00 2.85
405 868 0.032130 GACAGACACGGAGCACAAGA 59.968 55.000 0.00 0.00 0.00 3.02
445 910 4.374702 CTGTTGGAGCGTGCGTGC 62.375 66.667 0.00 0.00 0.00 5.34
446 911 3.716006 CCTGTTGGAGCGTGCGTG 61.716 66.667 0.00 0.00 34.57 5.34
567 1100 0.678366 ACGTGCCACCAAACAAGTGA 60.678 50.000 0.00 0.00 37.42 3.41
568 1101 0.248458 GACGTGCCACCAAACAAGTG 60.248 55.000 0.00 0.00 34.91 3.16
569 1102 0.678366 TGACGTGCCACCAAACAAGT 60.678 50.000 0.00 0.00 0.00 3.16
570 1103 0.453793 TTGACGTGCCACCAAACAAG 59.546 50.000 0.00 0.00 0.00 3.16
571 1104 0.171455 GTTGACGTGCCACCAAACAA 59.829 50.000 0.00 0.00 0.00 2.83
584 1117 1.669760 TAAAGGGGCGCTGTTGACG 60.670 57.895 7.64 0.00 0.00 4.35
605 1138 1.016130 GTGTGCGATCCCTGTCAGTG 61.016 60.000 0.00 0.00 0.00 3.66
644 1177 6.038603 GCTGATTTCAGTGTGGCATCTTATTA 59.961 38.462 9.21 0.00 45.45 0.98
645 1178 5.163581 GCTGATTTCAGTGTGGCATCTTATT 60.164 40.000 9.21 0.00 45.45 1.40
646 1179 4.337555 GCTGATTTCAGTGTGGCATCTTAT 59.662 41.667 9.21 0.00 45.45 1.73
647 1180 3.691118 GCTGATTTCAGTGTGGCATCTTA 59.309 43.478 9.21 0.00 45.45 2.10
703 1332 5.577164 GCTATACTCTGTTCGTGTGTTCATT 59.423 40.000 0.00 0.00 0.00 2.57
705 1334 4.022676 TGCTATACTCTGTTCGTGTGTTCA 60.023 41.667 0.00 0.00 0.00 3.18
713 1342 6.209361 TGATTAGCTTGCTATACTCTGTTCG 58.791 40.000 2.99 0.00 0.00 3.95
732 1361 1.225426 CCCCTGCTGCTGCTGATTA 59.775 57.895 21.35 0.00 40.01 1.75
734 1363 2.833604 GAACCCCTGCTGCTGCTGAT 62.834 60.000 21.35 6.13 40.01 2.90
756 1401 2.754375 GTGGGGTGGACGATTGGT 59.246 61.111 0.00 0.00 0.00 3.67
772 1417 0.874175 ACATACACATATGCGCGCGT 60.874 50.000 32.35 30.61 41.83 6.01
774 1419 2.411748 ACATACATACACATATGCGCGC 59.588 45.455 27.26 27.26 41.83 6.86
775 1420 5.743872 AGATACATACATACACATATGCGCG 59.256 40.000 0.00 0.00 41.83 6.86
776 1421 8.803201 ATAGATACATACATACACATATGCGC 57.197 34.615 0.00 0.00 41.83 6.09
960 1673 4.261801 ACTGTAGTACAATCCATTGGTGC 58.738 43.478 4.21 0.00 41.96 5.01
987 1700 6.350780 CCCCTCCGACCATTGTAATATACTAC 60.351 46.154 0.00 0.00 0.00 2.73
988 1701 5.718130 CCCCTCCGACCATTGTAATATACTA 59.282 44.000 0.00 0.00 0.00 1.82
1008 1721 3.083997 GGCGTGAGGTGATCCCCT 61.084 66.667 0.00 0.00 37.62 4.79
1648 2380 3.255379 GAGATTCGGGACACGCGC 61.255 66.667 5.73 0.00 43.86 6.86
2076 2811 0.984230 GACCTGGTCCACCAAGATGA 59.016 55.000 16.14 0.00 46.97 2.92
2077 2812 0.692476 TGACCTGGTCCACCAAGATG 59.308 55.000 23.42 0.00 46.97 2.90
2078 2813 1.444933 TTGACCTGGTCCACCAAGAT 58.555 50.000 23.42 0.00 46.97 2.40
2080 2815 1.609208 CTTTGACCTGGTCCACCAAG 58.391 55.000 23.42 15.28 46.97 3.61
2081 2816 0.184933 CCTTTGACCTGGTCCACCAA 59.815 55.000 23.42 9.33 46.97 3.67
2082 2817 1.715019 CCCTTTGACCTGGTCCACCA 61.715 60.000 23.42 2.96 45.30 4.17
2083 2818 1.074951 CCCTTTGACCTGGTCCACC 59.925 63.158 23.42 0.00 0.00 4.61
2086 2821 1.303643 CTGCCCTTTGACCTGGTCC 60.304 63.158 23.42 7.88 0.00 4.46
2098 2833 1.307343 AGGTAGATGTGCCTGCCCT 60.307 57.895 0.00 0.00 37.40 5.19
2099 2834 3.324713 AGGTAGATGTGCCTGCCC 58.675 61.111 0.00 0.00 37.40 5.36
2103 2838 2.378634 GGGCCAGGTAGATGTGCCT 61.379 63.158 4.39 0.00 39.92 4.75
2105 2840 1.153086 CTGGGCCAGGTAGATGTGC 60.153 63.158 26.34 0.00 0.00 4.57
2106 2841 1.153086 GCTGGGCCAGGTAGATGTG 60.153 63.158 33.43 7.49 31.21 3.21
2174 2924 2.222796 CGCACCAACGAGTGACATTATG 60.223 50.000 8.75 0.00 40.34 1.90
2175 2925 1.999735 CGCACCAACGAGTGACATTAT 59.000 47.619 8.75 0.00 40.34 1.28
2178 2928 0.249699 TTCGCACCAACGAGTGACAT 60.250 50.000 8.75 0.00 44.00 3.06
2179 2929 0.460459 TTTCGCACCAACGAGTGACA 60.460 50.000 8.75 0.00 44.00 3.58
2180 2930 0.653636 TTTTCGCACCAACGAGTGAC 59.346 50.000 8.75 1.12 44.00 3.67
2182 2932 0.934496 TCTTTTCGCACCAACGAGTG 59.066 50.000 0.00 0.00 44.00 3.51
2183 2933 1.597663 CTTCTTTTCGCACCAACGAGT 59.402 47.619 0.00 0.00 44.00 4.18
2184 2934 1.864711 TCTTCTTTTCGCACCAACGAG 59.135 47.619 0.00 0.00 44.00 4.18
2185 2935 1.942677 TCTTCTTTTCGCACCAACGA 58.057 45.000 0.00 0.00 41.04 3.85
2186 2936 2.480419 AGATCTTCTTTTCGCACCAACG 59.520 45.455 0.00 0.00 0.00 4.10
2187 2937 3.498397 TCAGATCTTCTTTTCGCACCAAC 59.502 43.478 0.00 0.00 0.00 3.77
2188 2938 3.738982 TCAGATCTTCTTTTCGCACCAA 58.261 40.909 0.00 0.00 0.00 3.67
2189 2939 3.244215 ACTCAGATCTTCTTTTCGCACCA 60.244 43.478 0.00 0.00 0.00 4.17
2190 2940 3.330267 ACTCAGATCTTCTTTTCGCACC 58.670 45.455 0.00 0.00 0.00 5.01
2191 2941 4.923871 TGTACTCAGATCTTCTTTTCGCAC 59.076 41.667 0.00 0.00 0.00 5.34
2192 2942 5.134202 TGTACTCAGATCTTCTTTTCGCA 57.866 39.130 0.00 0.00 0.00 5.10
2193 2943 6.467723 TTTGTACTCAGATCTTCTTTTCGC 57.532 37.500 0.00 0.00 0.00 4.70
2212 2962 9.284594 GTGTTCGCACATGTTATATAAATTTGT 57.715 29.630 0.00 0.00 46.85 2.83
2230 2980 0.951040 TGTGTGTGTGTGTGTTCGCA 60.951 50.000 0.00 0.00 0.00 5.10
2231 2981 0.520412 GTGTGTGTGTGTGTGTTCGC 60.520 55.000 0.00 0.00 0.00 4.70
2232 2982 0.793250 TGTGTGTGTGTGTGTGTTCG 59.207 50.000 0.00 0.00 0.00 3.95
2233 2983 1.533299 TGTGTGTGTGTGTGTGTGTTC 59.467 47.619 0.00 0.00 0.00 3.18
2234 2984 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
2235 2985 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2236 2986 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2237 2987 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
2238 2988 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2239 2989 2.395360 GGCGTGTGTGTGTGTGTGT 61.395 57.895 0.00 0.00 0.00 3.72
2240 2990 2.403186 GGCGTGTGTGTGTGTGTG 59.597 61.111 0.00 0.00 0.00 3.82
2241 2991 3.192230 CGGCGTGTGTGTGTGTGT 61.192 61.111 0.00 0.00 0.00 3.72
2242 2992 2.870341 CTCGGCGTGTGTGTGTGTG 61.870 63.158 6.85 0.00 0.00 3.82
2243 2993 2.566057 TTCTCGGCGTGTGTGTGTGT 62.566 55.000 6.85 0.00 0.00 3.72
2244 2994 1.821241 CTTCTCGGCGTGTGTGTGTG 61.821 60.000 6.85 0.00 0.00 3.82
2245 2995 1.591594 CTTCTCGGCGTGTGTGTGT 60.592 57.895 6.85 0.00 0.00 3.72
2246 2996 2.310233 CCTTCTCGGCGTGTGTGTG 61.310 63.158 6.85 0.00 0.00 3.82
2247 2997 2.029073 CCTTCTCGGCGTGTGTGT 59.971 61.111 6.85 0.00 0.00 3.72
2248 2998 2.738521 CCCTTCTCGGCGTGTGTG 60.739 66.667 6.85 0.00 0.00 3.82
2249 2999 2.803817 AACCCTTCTCGGCGTGTGT 61.804 57.895 6.85 0.00 0.00 3.72
2250 3000 2.030562 AACCCTTCTCGGCGTGTG 59.969 61.111 6.85 2.36 0.00 3.82
2251 3001 2.030562 CAACCCTTCTCGGCGTGT 59.969 61.111 6.85 0.00 0.00 4.49
2252 3002 0.673644 ATTCAACCCTTCTCGGCGTG 60.674 55.000 6.85 4.24 0.00 5.34
2253 3003 0.673644 CATTCAACCCTTCTCGGCGT 60.674 55.000 6.85 0.00 0.00 5.68
2254 3004 1.982073 GCATTCAACCCTTCTCGGCG 61.982 60.000 0.00 0.00 0.00 6.46
2255 3005 1.657751 GGCATTCAACCCTTCTCGGC 61.658 60.000 0.00 0.00 0.00 5.54
2256 3006 1.369091 CGGCATTCAACCCTTCTCGG 61.369 60.000 0.00 0.00 0.00 4.63
2257 3007 1.369091 CCGGCATTCAACCCTTCTCG 61.369 60.000 0.00 0.00 0.00 4.04
2258 3008 0.035439 TCCGGCATTCAACCCTTCTC 60.035 55.000 0.00 0.00 0.00 2.87
2259 3009 0.035056 CTCCGGCATTCAACCCTTCT 60.035 55.000 0.00 0.00 0.00 2.85
2260 3010 1.657751 GCTCCGGCATTCAACCCTTC 61.658 60.000 0.00 0.00 38.54 3.46
2261 3011 1.678970 GCTCCGGCATTCAACCCTT 60.679 57.895 0.00 0.00 38.54 3.95
2262 3012 2.044946 GCTCCGGCATTCAACCCT 60.045 61.111 0.00 0.00 38.54 4.34
2263 3013 3.140814 GGCTCCGGCATTCAACCC 61.141 66.667 0.00 0.00 40.87 4.11
2264 3014 3.508840 CGGCTCCGGCATTCAACC 61.509 66.667 0.00 0.00 40.87 3.77
2265 3015 2.435938 TCGGCTCCGGCATTCAAC 60.436 61.111 8.59 0.00 40.87 3.18
2266 3016 2.125147 CTCGGCTCCGGCATTCAA 60.125 61.111 8.59 0.00 40.87 2.69
2267 3017 4.161295 CCTCGGCTCCGGCATTCA 62.161 66.667 8.59 0.00 40.87 2.57
2268 3018 4.162690 ACCTCGGCTCCGGCATTC 62.163 66.667 8.59 0.00 40.87 2.67
2269 3019 4.473520 CACCTCGGCTCCGGCATT 62.474 66.667 8.59 0.00 40.87 3.56
2272 3022 4.699522 AAACACCTCGGCTCCGGC 62.700 66.667 8.59 0.00 40.25 6.13
2273 3023 2.434359 GAAACACCTCGGCTCCGG 60.434 66.667 8.59 0.00 40.25 5.14
2274 3024 2.809601 CGAAACACCTCGGCTCCG 60.810 66.667 1.14 1.14 41.35 4.63
2275 3025 1.446272 CTCGAAACACCTCGGCTCC 60.446 63.158 0.00 0.00 39.35 4.70
2276 3026 1.446272 CCTCGAAACACCTCGGCTC 60.446 63.158 0.00 0.00 39.35 4.70
2277 3027 1.755393 AACCTCGAAACACCTCGGCT 61.755 55.000 0.00 0.00 39.35 5.52
2278 3028 1.289800 GAACCTCGAAACACCTCGGC 61.290 60.000 0.00 0.00 39.35 5.54
2279 3029 0.032952 TGAACCTCGAAACACCTCGG 59.967 55.000 0.00 0.00 39.35 4.63
2280 3030 1.726791 CATGAACCTCGAAACACCTCG 59.273 52.381 0.00 0.00 40.25 4.63
2281 3031 2.076863 CCATGAACCTCGAAACACCTC 58.923 52.381 0.00 0.00 0.00 3.85
2282 3032 1.697432 TCCATGAACCTCGAAACACCT 59.303 47.619 0.00 0.00 0.00 4.00
2283 3033 2.076863 CTCCATGAACCTCGAAACACC 58.923 52.381 0.00 0.00 0.00 4.16
2284 3034 1.464997 GCTCCATGAACCTCGAAACAC 59.535 52.381 0.00 0.00 0.00 3.32
2285 3035 1.610624 GGCTCCATGAACCTCGAAACA 60.611 52.381 0.00 0.00 0.00 2.83
2286 3036 1.087501 GGCTCCATGAACCTCGAAAC 58.912 55.000 0.00 0.00 0.00 2.78
2287 3037 0.690192 TGGCTCCATGAACCTCGAAA 59.310 50.000 0.00 0.00 0.00 3.46
2288 3038 0.911769 ATGGCTCCATGAACCTCGAA 59.088 50.000 0.00 0.00 35.03 3.71
2289 3039 0.465705 GATGGCTCCATGAACCTCGA 59.534 55.000 6.07 0.00 36.70 4.04
2290 3040 0.178767 TGATGGCTCCATGAACCTCG 59.821 55.000 6.07 0.00 36.70 4.63
2291 3041 2.653234 ATGATGGCTCCATGAACCTC 57.347 50.000 6.07 0.00 36.70 3.85
2292 3042 3.051581 ACTATGATGGCTCCATGAACCT 58.948 45.455 6.07 0.00 36.70 3.50
2293 3043 3.406764 GACTATGATGGCTCCATGAACC 58.593 50.000 6.07 0.00 36.70 3.62
2294 3044 3.062763 CGACTATGATGGCTCCATGAAC 58.937 50.000 6.07 0.00 36.70 3.18
2295 3045 2.548707 GCGACTATGATGGCTCCATGAA 60.549 50.000 6.07 0.00 36.70 2.57
2296 3046 1.001293 GCGACTATGATGGCTCCATGA 59.999 52.381 6.07 0.00 36.70 3.07
2297 3047 1.270465 TGCGACTATGATGGCTCCATG 60.270 52.381 6.07 0.00 36.70 3.66
2298 3048 1.051008 TGCGACTATGATGGCTCCAT 58.949 50.000 0.14 0.14 39.69 3.41
2299 3049 1.001293 GATGCGACTATGATGGCTCCA 59.999 52.381 0.00 0.00 0.00 3.86
2300 3050 1.719600 GATGCGACTATGATGGCTCC 58.280 55.000 0.00 0.00 0.00 4.70
2301 3051 1.344458 CGATGCGACTATGATGGCTC 58.656 55.000 0.00 0.00 0.00 4.70
2302 3052 0.668706 GCGATGCGACTATGATGGCT 60.669 55.000 0.00 0.00 0.00 4.75
2303 3053 0.668706 AGCGATGCGACTATGATGGC 60.669 55.000 0.00 0.00 0.00 4.40
2304 3054 2.636768 TAGCGATGCGACTATGATGG 57.363 50.000 0.00 0.00 0.00 3.51
2305 3055 2.780557 CGATAGCGATGCGACTATGATG 59.219 50.000 0.00 0.00 40.82 3.07
2306 3056 2.678336 TCGATAGCGATGCGACTATGAT 59.322 45.455 0.00 0.00 42.51 2.45
2307 3057 2.073816 TCGATAGCGATGCGACTATGA 58.926 47.619 0.00 0.00 42.51 2.15
2308 3058 2.527442 TCGATAGCGATGCGACTATG 57.473 50.000 0.00 0.00 42.51 2.23
2319 3069 3.123050 TCACATGTTTCCATCGATAGCG 58.877 45.455 0.00 0.00 39.35 4.26
2320 3070 5.484173 TTTCACATGTTTCCATCGATAGC 57.516 39.130 0.00 0.00 0.00 2.97
2321 3071 7.250445 TGATTTCACATGTTTCCATCGATAG 57.750 36.000 0.00 0.00 0.00 2.08
2322 3072 7.806409 ATGATTTCACATGTTTCCATCGATA 57.194 32.000 0.00 0.00 0.00 2.92
2323 3073 6.704289 ATGATTTCACATGTTTCCATCGAT 57.296 33.333 0.00 0.00 0.00 3.59
2324 3074 7.806409 ATATGATTTCACATGTTTCCATCGA 57.194 32.000 0.00 0.00 0.00 3.59
2325 3075 8.861033 AAATATGATTTCACATGTTTCCATCG 57.139 30.769 0.00 0.00 37.12 3.84
2326 3076 8.961092 CGAAATATGATTTCACATGTTTCCATC 58.039 33.333 17.93 0.00 46.00 3.51
2327 3077 8.685427 TCGAAATATGATTTCACATGTTTCCAT 58.315 29.630 17.93 0.00 46.00 3.41
2328 3078 8.049655 TCGAAATATGATTTCACATGTTTCCA 57.950 30.769 17.93 8.67 46.00 3.53
2329 3079 8.961092 CATCGAAATATGATTTCACATGTTTCC 58.039 33.333 17.93 7.32 46.00 3.13
2330 3080 8.474577 GCATCGAAATATGATTTCACATGTTTC 58.525 33.333 15.55 15.55 45.66 2.78
2331 3081 7.436080 GGCATCGAAATATGATTTCACATGTTT 59.564 33.333 11.40 0.00 41.62 2.83
2332 3082 6.919662 GGCATCGAAATATGATTTCACATGTT 59.080 34.615 11.40 0.00 34.14 2.71
2333 3083 6.039605 TGGCATCGAAATATGATTTCACATGT 59.960 34.615 11.40 0.00 0.00 3.21
2334 3084 6.361481 GTGGCATCGAAATATGATTTCACATG 59.639 38.462 11.40 11.99 31.70 3.21
2335 3085 6.039605 TGTGGCATCGAAATATGATTTCACAT 59.960 34.615 11.40 0.00 34.28 3.21
2336 3086 5.356470 TGTGGCATCGAAATATGATTTCACA 59.644 36.000 11.40 5.61 35.58 3.58
2337 3087 5.820131 TGTGGCATCGAAATATGATTTCAC 58.180 37.500 11.40 3.53 31.86 3.18
2338 3088 6.318396 TCTTGTGGCATCGAAATATGATTTCA 59.682 34.615 11.40 1.31 0.00 2.69
2339 3089 6.728200 TCTTGTGGCATCGAAATATGATTTC 58.272 36.000 0.00 2.45 0.00 2.17
2340 3090 6.698008 TCTTGTGGCATCGAAATATGATTT 57.302 33.333 0.00 0.00 0.00 2.17
2341 3091 6.263842 ACATCTTGTGGCATCGAAATATGATT 59.736 34.615 0.00 0.00 0.00 2.57
2342 3092 5.766670 ACATCTTGTGGCATCGAAATATGAT 59.233 36.000 0.00 0.00 0.00 2.45
2343 3093 5.125356 ACATCTTGTGGCATCGAAATATGA 58.875 37.500 0.00 0.00 0.00 2.15
2344 3094 5.428496 ACATCTTGTGGCATCGAAATATG 57.572 39.130 0.00 0.00 0.00 1.78
2345 3095 7.566760 TTTACATCTTGTGGCATCGAAATAT 57.433 32.000 0.00 0.00 0.00 1.28
2346 3096 6.993786 TTTACATCTTGTGGCATCGAAATA 57.006 33.333 0.00 0.00 0.00 1.40
2347 3097 5.895636 TTTACATCTTGTGGCATCGAAAT 57.104 34.783 0.00 0.00 0.00 2.17
2348 3098 5.392919 CCATTTACATCTTGTGGCATCGAAA 60.393 40.000 0.00 0.00 0.00 3.46
2349 3099 4.096231 CCATTTACATCTTGTGGCATCGAA 59.904 41.667 0.00 0.00 0.00 3.71
2350 3100 3.627123 CCATTTACATCTTGTGGCATCGA 59.373 43.478 0.00 0.00 0.00 3.59
2351 3101 3.956233 CCATTTACATCTTGTGGCATCG 58.044 45.455 0.00 0.00 0.00 3.84
2356 3106 1.472082 TGCGCCATTTACATCTTGTGG 59.528 47.619 4.18 0.00 0.00 4.17
2357 3107 2.917701 TGCGCCATTTACATCTTGTG 57.082 45.000 4.18 0.00 0.00 3.33
2358 3108 3.932545 TTTGCGCCATTTACATCTTGT 57.067 38.095 4.18 0.00 0.00 3.16
2359 3109 4.236935 AGTTTTGCGCCATTTACATCTTG 58.763 39.130 4.18 0.00 0.00 3.02
2360 3110 4.022416 TGAGTTTTGCGCCATTTACATCTT 60.022 37.500 4.18 0.00 0.00 2.40
2361 3111 3.505680 TGAGTTTTGCGCCATTTACATCT 59.494 39.130 4.18 0.00 0.00 2.90
2362 3112 3.832276 TGAGTTTTGCGCCATTTACATC 58.168 40.909 4.18 0.00 0.00 3.06
2363 3113 3.255642 ACTGAGTTTTGCGCCATTTACAT 59.744 39.130 4.18 0.00 0.00 2.29
2364 3114 2.621055 ACTGAGTTTTGCGCCATTTACA 59.379 40.909 4.18 0.00 0.00 2.41
2365 3115 2.979813 CACTGAGTTTTGCGCCATTTAC 59.020 45.455 4.18 0.00 0.00 2.01
2366 3116 2.606795 GCACTGAGTTTTGCGCCATTTA 60.607 45.455 4.18 0.00 0.00 1.40
2367 3117 1.869342 GCACTGAGTTTTGCGCCATTT 60.869 47.619 4.18 0.00 0.00 2.32
2368 3118 0.318955 GCACTGAGTTTTGCGCCATT 60.319 50.000 4.18 0.00 0.00 3.16
2369 3119 1.174712 AGCACTGAGTTTTGCGCCAT 61.175 50.000 4.18 0.00 43.87 4.40
2370 3120 1.383456 AAGCACTGAGTTTTGCGCCA 61.383 50.000 4.18 0.00 43.87 5.69
2371 3121 0.936297 CAAGCACTGAGTTTTGCGCC 60.936 55.000 4.18 0.00 43.87 6.53
2372 3122 0.936297 CCAAGCACTGAGTTTTGCGC 60.936 55.000 0.00 0.00 43.87 6.09
2373 3123 0.381801 ACCAAGCACTGAGTTTTGCG 59.618 50.000 2.05 0.00 43.87 4.85
2374 3124 1.597937 CGACCAAGCACTGAGTTTTGC 60.598 52.381 2.05 0.00 39.16 3.68
2375 3125 1.002468 CCGACCAAGCACTGAGTTTTG 60.002 52.381 0.84 0.84 0.00 2.44
2376 3126 1.308998 CCGACCAAGCACTGAGTTTT 58.691 50.000 0.00 0.00 0.00 2.43
2377 3127 0.180406 ACCGACCAAGCACTGAGTTT 59.820 50.000 0.00 0.00 0.00 2.66
2378 3128 0.532862 CACCGACCAAGCACTGAGTT 60.533 55.000 0.00 0.00 0.00 3.01
2379 3129 1.069765 CACCGACCAAGCACTGAGT 59.930 57.895 0.00 0.00 0.00 3.41
2380 3130 1.669115 CCACCGACCAAGCACTGAG 60.669 63.158 0.00 0.00 0.00 3.35
2381 3131 2.377628 GACCACCGACCAAGCACTGA 62.378 60.000 0.00 0.00 0.00 3.41
2382 3132 1.961277 GACCACCGACCAAGCACTG 60.961 63.158 0.00 0.00 0.00 3.66
2383 3133 2.383245 CTGACCACCGACCAAGCACT 62.383 60.000 0.00 0.00 0.00 4.40
2384 3134 1.961277 CTGACCACCGACCAAGCAC 60.961 63.158 0.00 0.00 0.00 4.40
2385 3135 1.978455 AACTGACCACCGACCAAGCA 61.978 55.000 0.00 0.00 0.00 3.91
2386 3136 1.227853 AACTGACCACCGACCAAGC 60.228 57.895 0.00 0.00 0.00 4.01
2387 3137 0.179056 ACAACTGACCACCGACCAAG 60.179 55.000 0.00 0.00 0.00 3.61
2388 3138 0.179067 GACAACTGACCACCGACCAA 60.179 55.000 0.00 0.00 0.00 3.67
2389 3139 1.046472 AGACAACTGACCACCGACCA 61.046 55.000 0.00 0.00 0.00 4.02
2390 3140 0.319641 GAGACAACTGACCACCGACC 60.320 60.000 0.00 0.00 0.00 4.79
2391 3141 0.674534 AGAGACAACTGACCACCGAC 59.325 55.000 0.00 0.00 0.00 4.79
2392 3142 2.281539 TAGAGACAACTGACCACCGA 57.718 50.000 0.00 0.00 0.00 4.69
2393 3143 3.057734 GTTTAGAGACAACTGACCACCG 58.942 50.000 0.00 0.00 0.00 4.94
2394 3144 3.057734 CGTTTAGAGACAACTGACCACC 58.942 50.000 0.00 0.00 0.00 4.61
2395 3145 3.973657 TCGTTTAGAGACAACTGACCAC 58.026 45.455 0.00 0.00 0.00 4.16
2396 3146 4.659111 TTCGTTTAGAGACAACTGACCA 57.341 40.909 0.00 0.00 0.00 4.02
2397 3147 6.867293 AGTATTTCGTTTAGAGACAACTGACC 59.133 38.462 0.00 0.00 0.00 4.02
2398 3148 7.870588 AGTATTTCGTTTAGAGACAACTGAC 57.129 36.000 0.00 0.00 0.00 3.51
2399 3149 9.622004 CTAAGTATTTCGTTTAGAGACAACTGA 57.378 33.333 0.00 0.00 0.00 3.41
2400 3150 9.408069 ACTAAGTATTTCGTTTAGAGACAACTG 57.592 33.333 0.00 0.00 0.00 3.16
2401 3151 9.408069 CACTAAGTATTTCGTTTAGAGACAACT 57.592 33.333 0.00 0.00 0.00 3.16
2402 3152 9.189723 ACACTAAGTATTTCGTTTAGAGACAAC 57.810 33.333 0.00 0.00 0.00 3.32
2403 3153 9.403110 GACACTAAGTATTTCGTTTAGAGACAA 57.597 33.333 0.00 0.00 0.00 3.18
2404 3154 8.025445 GGACACTAAGTATTTCGTTTAGAGACA 58.975 37.037 0.00 0.00 0.00 3.41
2405 3155 8.242739 AGGACACTAAGTATTTCGTTTAGAGAC 58.757 37.037 0.00 0.00 0.00 3.36
2406 3156 8.242053 CAGGACACTAAGTATTTCGTTTAGAGA 58.758 37.037 0.00 0.00 0.00 3.10
2407 3157 7.488471 CCAGGACACTAAGTATTTCGTTTAGAG 59.512 40.741 0.00 0.00 0.00 2.43
2408 3158 7.039504 ACCAGGACACTAAGTATTTCGTTTAGA 60.040 37.037 0.00 0.00 0.00 2.10
2409 3159 7.063074 CACCAGGACACTAAGTATTTCGTTTAG 59.937 40.741 0.00 0.00 0.00 1.85
2410 3160 6.869913 CACCAGGACACTAAGTATTTCGTTTA 59.130 38.462 0.00 0.00 0.00 2.01
2411 3161 5.699458 CACCAGGACACTAAGTATTTCGTTT 59.301 40.000 0.00 0.00 0.00 3.60
2412 3162 5.235516 CACCAGGACACTAAGTATTTCGTT 58.764 41.667 0.00 0.00 0.00 3.85
2413 3163 4.817517 CACCAGGACACTAAGTATTTCGT 58.182 43.478 0.00 0.00 0.00 3.85
2414 3164 3.617263 GCACCAGGACACTAAGTATTTCG 59.383 47.826 0.00 0.00 0.00 3.46
2415 3165 3.939592 GGCACCAGGACACTAAGTATTTC 59.060 47.826 0.00 0.00 0.00 2.17
2416 3166 3.587506 AGGCACCAGGACACTAAGTATTT 59.412 43.478 0.00 0.00 0.00 1.40
2417 3167 3.182152 AGGCACCAGGACACTAAGTATT 58.818 45.455 0.00 0.00 0.00 1.89
2418 3168 2.834113 AGGCACCAGGACACTAAGTAT 58.166 47.619 0.00 0.00 0.00 2.12
2419 3169 2.320681 AGGCACCAGGACACTAAGTA 57.679 50.000 0.00 0.00 0.00 2.24
2420 3170 1.348036 GAAGGCACCAGGACACTAAGT 59.652 52.381 0.00 0.00 0.00 2.24
2421 3171 1.347707 TGAAGGCACCAGGACACTAAG 59.652 52.381 0.00 0.00 0.00 2.18
2422 3172 1.429930 TGAAGGCACCAGGACACTAA 58.570 50.000 0.00 0.00 0.00 2.24
2423 3173 1.429930 TTGAAGGCACCAGGACACTA 58.570 50.000 0.00 0.00 0.00 2.74
2424 3174 0.773644 ATTGAAGGCACCAGGACACT 59.226 50.000 0.00 0.00 0.00 3.55
2425 3175 1.620822 AATTGAAGGCACCAGGACAC 58.379 50.000 0.00 0.00 0.00 3.67
2426 3176 2.380064 AAATTGAAGGCACCAGGACA 57.620 45.000 0.00 0.00 0.00 4.02
2427 3177 2.492088 GGTAAATTGAAGGCACCAGGAC 59.508 50.000 0.00 0.00 0.00 3.85
2428 3178 2.109128 TGGTAAATTGAAGGCACCAGGA 59.891 45.455 0.00 0.00 34.40 3.86
2429 3179 2.524306 TGGTAAATTGAAGGCACCAGG 58.476 47.619 0.00 0.00 34.40 4.45
2430 3180 4.599047 TTTGGTAAATTGAAGGCACCAG 57.401 40.909 0.00 0.00 40.23 4.00
2431 3181 5.512232 GGATTTTGGTAAATTGAAGGCACCA 60.512 40.000 0.00 0.00 37.50 4.17
2432 3182 4.935205 GGATTTTGGTAAATTGAAGGCACC 59.065 41.667 0.00 0.00 34.16 5.01
2433 3183 5.546526 TGGATTTTGGTAAATTGAAGGCAC 58.453 37.500 0.00 0.00 34.16 5.01
2434 3184 5.815233 TGGATTTTGGTAAATTGAAGGCA 57.185 34.783 0.00 0.00 34.16 4.75
2435 3185 7.686438 ATTTGGATTTTGGTAAATTGAAGGC 57.314 32.000 0.00 0.00 34.16 4.35
2436 3186 8.022550 GCAATTTGGATTTTGGTAAATTGAAGG 58.977 33.333 19.53 0.81 45.99 3.46
2437 3187 8.022550 GGCAATTTGGATTTTGGTAAATTGAAG 58.977 33.333 19.53 1.08 45.99 3.02
2438 3188 7.723172 AGGCAATTTGGATTTTGGTAAATTGAA 59.277 29.630 19.53 0.00 45.99 2.69
2439 3189 7.230027 AGGCAATTTGGATTTTGGTAAATTGA 58.770 30.769 19.53 0.00 45.99 2.57
2440 3190 7.451501 AGGCAATTTGGATTTTGGTAAATTG 57.548 32.000 13.83 13.83 45.92 2.32
2441 3191 7.884257 CAAGGCAATTTGGATTTTGGTAAATT 58.116 30.769 0.00 0.00 34.16 1.82
2442 3192 7.451501 CAAGGCAATTTGGATTTTGGTAAAT 57.548 32.000 0.00 0.00 36.68 1.40
2443 3193 6.874288 CAAGGCAATTTGGATTTTGGTAAA 57.126 33.333 0.00 0.00 0.00 2.01
2455 3205 1.950828 TGCAACACCAAGGCAATTTG 58.049 45.000 0.00 0.00 34.05 2.32
2456 3206 2.706339 TTGCAACACCAAGGCAATTT 57.294 40.000 0.00 0.00 42.12 1.82
2457 3207 2.706339 TTTGCAACACCAAGGCAATT 57.294 40.000 0.00 0.00 45.81 2.32
2458 3208 2.879646 CAATTTGCAACACCAAGGCAAT 59.120 40.909 0.00 0.00 45.81 3.56
2459 3209 2.286872 CAATTTGCAACACCAAGGCAA 58.713 42.857 0.00 0.00 44.97 4.52
2460 3210 1.950828 CAATTTGCAACACCAAGGCA 58.049 45.000 0.00 0.00 35.41 4.75
2461 3211 0.587768 GCAATTTGCAACACCAAGGC 59.412 50.000 16.35 0.00 44.26 4.35
2472 3222 6.685403 GCAAAATATGACATGAAGCAATTTGC 59.315 34.615 13.55 13.55 45.46 3.68
2506 3256 9.516314 GCCTGCTATAATCGAAAATTTTAAACT 57.484 29.630 2.75 0.00 0.00 2.66
2507 3257 9.516314 AGCCTGCTATAATCGAAAATTTTAAAC 57.484 29.630 2.75 0.00 0.00 2.01
2515 3266 4.574828 GTCCAAGCCTGCTATAATCGAAAA 59.425 41.667 0.00 0.00 0.00 2.29
2516 3267 4.127171 GTCCAAGCCTGCTATAATCGAAA 58.873 43.478 0.00 0.00 0.00 3.46
2518 3269 2.037251 GGTCCAAGCCTGCTATAATCGA 59.963 50.000 0.00 0.00 0.00 3.59
2529 3280 1.062488 ACTGTCCAAGGTCCAAGCCT 61.062 55.000 0.00 0.00 41.41 4.58
2540 3291 1.904771 CCCGGCTCATACTGTCCAA 59.095 57.895 0.00 0.00 0.00 3.53
2549 3300 0.466124 GAACTCTAAGCCCGGCTCAT 59.534 55.000 13.72 0.00 38.25 2.90
2550 3301 1.898154 GAACTCTAAGCCCGGCTCA 59.102 57.895 13.72 0.00 38.25 4.26
2553 3308 0.806492 CTTCGAACTCTAAGCCCGGC 60.806 60.000 0.00 0.00 0.00 6.13
2555 3310 2.666989 GCTTCGAACTCTAAGCCCG 58.333 57.895 0.00 0.00 41.80 6.13
2558 3313 2.689646 ACAAGGCTTCGAACTCTAAGC 58.310 47.619 0.00 7.29 45.88 3.09
2559 3314 4.425520 CCTACAAGGCTTCGAACTCTAAG 58.574 47.826 0.00 0.00 0.00 2.18
2563 3318 1.275573 ACCCTACAAGGCTTCGAACTC 59.724 52.381 0.00 0.00 32.73 3.01
2714 3472 7.970614 GCACCCAAAAAGATACATCTTCTAAAG 59.029 37.037 4.98 0.00 45.83 1.85
2730 3488 4.070630 CATTTTCTGGAGCACCCAAAAA 57.929 40.909 10.01 10.33 46.07 1.94
2743 3501 5.065859 TGTTATCATGCGTACCCATTTTCTG 59.934 40.000 0.00 0.00 0.00 3.02
2785 3543 4.640771 TGCTGATAAAGACCTTTGTCCT 57.359 40.909 13.98 0.00 42.81 3.85
2804 3563 5.123936 ACCTTTTCCCTTTCGTCTATATGC 58.876 41.667 0.00 0.00 0.00 3.14
2811 3570 4.532314 TCTAGACCTTTTCCCTTTCGTC 57.468 45.455 0.00 0.00 0.00 4.20
2830 3589 5.183904 CCTAACTTTAGGCAAGCACATTTCT 59.816 40.000 2.02 0.00 43.43 2.52
2854 3613 0.394899 CTCCTTGGAGAATGGCCACC 60.395 60.000 8.16 5.08 34.56 4.61
2855 3614 1.034292 GCTCCTTGGAGAATGGCCAC 61.034 60.000 19.85 0.00 34.56 5.01
2856 3615 1.304282 GCTCCTTGGAGAATGGCCA 59.696 57.895 19.85 8.56 0.00 5.36
2859 3618 1.821332 GCCGCTCCTTGGAGAATGG 60.821 63.158 19.85 16.79 0.00 3.16
2911 3678 1.302949 CGGATCCCCCAAAGCAAGA 59.697 57.895 6.06 0.00 34.14 3.02
3002 3770 1.949525 GTGGACACTTGTCATGTTGCT 59.050 47.619 11.40 0.00 46.47 3.91
3024 3792 4.883083 TGCATATAGAGTGTCCGATTTCC 58.117 43.478 0.00 0.00 0.00 3.13
3028 3796 5.728637 TTCATGCATATAGAGTGTCCGAT 57.271 39.130 0.00 0.00 0.00 4.18
3116 3884 8.887036 ATGTTGTGAATTTCTTTAGTTTTCCC 57.113 30.769 0.00 0.00 0.00 3.97
3124 3892 8.877864 ATGGGTCTATGTTGTGAATTTCTTTA 57.122 30.769 0.00 0.00 0.00 1.85
3133 3901 3.678806 GCGAGAATGGGTCTATGTTGTGA 60.679 47.826 0.00 0.00 36.41 3.58
3138 3906 1.338337 CGAGCGAGAATGGGTCTATGT 59.662 52.381 0.00 0.00 39.28 2.29
3148 3920 0.741221 GGAACCAAGCGAGCGAGAAT 60.741 55.000 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.