Multiple sequence alignment - TraesCS5D01G013100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G013100 chr5D 100.000 7702 0 0 1 7702 7020865 7013164 0.000000e+00 14224.0
1 TraesCS5D01G013100 chr5D 81.475 556 59 20 6468 7021 1586984 1587497 4.300000e-112 416.0
2 TraesCS5D01G013100 chr5D 80.228 263 12 16 762 1024 7031335 7031113 2.220000e-35 161.0
3 TraesCS5D01G013100 chr5D 78.682 258 25 16 6963 7192 1587492 1587747 2.240000e-30 145.0
4 TraesCS5D01G013100 chr5D 86.111 144 7 6 625 762 7033507 7033371 8.060000e-30 143.0
5 TraesCS5D01G013100 chr5A 93.060 2565 104 37 4229 6741 2896319 2893777 0.000000e+00 3683.0
6 TraesCS5D01G013100 chr5A 92.924 2459 102 31 4229 6630 2973076 2970633 0.000000e+00 3511.0
7 TraesCS5D01G013100 chr5A 92.528 1606 88 20 2123 3720 2975112 2973531 0.000000e+00 2272.0
8 TraesCS5D01G013100 chr5A 92.000 1000 56 14 2123 3117 2898388 2897408 0.000000e+00 1382.0
9 TraesCS5D01G013100 chr5A 93.248 622 34 7 3102 3720 2897390 2896774 0.000000e+00 909.0
10 TraesCS5D01G013100 chr5A 85.138 942 56 43 895 1789 2899703 2898799 0.000000e+00 887.0
11 TraesCS5D01G013100 chr5A 85.138 942 56 43 895 1789 2976427 2975523 0.000000e+00 887.0
12 TraesCS5D01G013100 chr5A 86.792 477 34 12 7212 7678 2892329 2891872 8.920000e-139 505.0
13 TraesCS5D01G013100 chr5A 87.569 362 28 8 3797 4158 2896771 2896427 3.350000e-108 403.0
14 TraesCS5D01G013100 chr5A 93.796 274 8 4 1772 2039 2898689 2898419 3.350000e-108 403.0
15 TraesCS5D01G013100 chr5A 87.569 362 28 8 3797 4158 2973528 2973184 3.350000e-108 403.0
16 TraesCS5D01G013100 chr5A 93.796 274 8 4 1772 2039 2975413 2975143 3.350000e-108 403.0
17 TraesCS5D01G013100 chr5A 85.203 419 23 20 6779 7197 2893771 2893392 2.010000e-105 394.0
18 TraesCS5D01G013100 chr5A 84.915 411 31 10 227 616 2912460 2912060 3.370000e-103 387.0
19 TraesCS5D01G013100 chr5A 84.300 293 20 11 626 903 2908826 2908545 5.930000e-66 263.0
20 TraesCS5D01G013100 chr5A 93.000 100 7 0 1426 1525 699483282 699483183 6.230000e-31 147.0
21 TraesCS5D01G013100 chr5A 91.837 98 8 0 4937 5034 605313487 605313390 3.750000e-28 137.0
22 TraesCS5D01G013100 chrUn 93.384 1708 85 12 2115 3812 65426896 65428585 0.000000e+00 2503.0
23 TraesCS5D01G013100 chrUn 89.813 1767 83 32 5002 6722 65429580 65431295 0.000000e+00 2176.0
24 TraesCS5D01G013100 chrUn 95.626 663 22 2 4243 4898 65428925 65429587 0.000000e+00 1057.0
25 TraesCS5D01G013100 chrUn 90.947 486 24 11 1267 1742 65426067 65426542 3.030000e-178 636.0
26 TraesCS5D01G013100 chrUn 83.210 673 38 30 624 1269 65425282 65425906 1.460000e-151 547.0
27 TraesCS5D01G013100 chrUn 84.483 580 49 18 6045 6594 146275919 146276487 1.140000e-147 534.0
28 TraesCS5D01G013100 chrUn 87.419 461 30 14 6763 7217 65431290 65431728 8.920000e-139 505.0
29 TraesCS5D01G013100 chrUn 82.363 567 67 14 6 551 367563786 367563232 5.440000e-126 462.0
30 TraesCS5D01G013100 chrUn 91.901 284 18 3 3906 4186 65428630 65428911 7.250000e-105 392.0
31 TraesCS5D01G013100 chrUn 85.614 285 23 9 1759 2027 65426588 65426870 4.550000e-72 283.0
32 TraesCS5D01G013100 chrUn 87.097 248 22 5 307 553 65424933 65425171 9.850000e-69 272.0
33 TraesCS5D01G013100 chrUn 84.300 293 20 11 626 903 367563086 367562805 5.930000e-66 263.0
34 TraesCS5D01G013100 chrUn 82.390 159 22 2 7046 7198 122419400 122419242 4.850000e-27 134.0
35 TraesCS5D01G013100 chrUn 97.500 40 0 1 1267 1305 65425929 65425968 4.990000e-07 67.6
36 TraesCS5D01G013100 chrUn 95.000 40 1 1 1267 1305 65425975 65426014 2.320000e-05 62.1
37 TraesCS5D01G013100 chr4A 76.705 953 171 38 2170 3095 590185337 590184409 4.180000e-132 483.0
38 TraesCS5D01G013100 chr4A 77.426 505 90 14 5648 6129 590181910 590181407 5.890000e-71 279.0
39 TraesCS5D01G013100 chr4A 74.133 692 128 33 5188 5852 590114276 590113609 9.990000e-59 239.0
40 TraesCS5D01G013100 chr4A 85.864 191 27 0 6198 6388 590181306 590181116 3.640000e-48 204.0
41 TraesCS5D01G013100 chr4A 88.043 92 11 0 5188 5279 590182400 590182309 8.170000e-20 110.0
42 TraesCS5D01G013100 chr1B 82.011 567 69 14 6 551 23216213 23215659 1.180000e-122 451.0
43 TraesCS5D01G013100 chr1B 84.915 411 31 10 227 616 23219096 23218696 3.370000e-103 387.0
44 TraesCS5D01G013100 chr1B 84.300 293 20 11 626 903 23215513 23215232 5.930000e-66 263.0
45 TraesCS5D01G013100 chr4D 77.645 501 89 14 5648 6126 12463459 12463958 4.550000e-72 283.0
46 TraesCS5D01G013100 chr4D 89.720 214 22 0 2674 2887 12460486 12460699 2.740000e-69 274.0
47 TraesCS5D01G013100 chr4D 86.395 147 20 0 1842 1988 12459746 12459892 2.220000e-35 161.0
48 TraesCS5D01G013100 chr4D 85.556 90 13 0 5190 5279 12462942 12463031 2.290000e-15 95.3
49 TraesCS5D01G013100 chr4B 77.374 495 88 16 5648 6125 22734082 22733595 9.850000e-69 272.0
50 TraesCS5D01G013100 chr4B 85.484 248 36 0 4523 4770 23011354 23011107 7.670000e-65 259.0
51 TraesCS5D01G013100 chr4B 81.043 211 39 1 5643 5852 23010209 23009999 4.780000e-37 167.0
52 TraesCS5D01G013100 chr4B 93.407 91 6 0 1426 1516 660120276 660120186 1.350000e-27 135.0
53 TraesCS5D01G013100 chr7A 93.077 130 9 0 1396 1525 96570438 96570309 2.840000e-44 191.0
54 TraesCS5D01G013100 chr7D 92.308 130 10 0 1396 1525 93791602 93791473 1.320000e-42 185.0
55 TraesCS5D01G013100 chr7B 92.308 130 10 0 1396 1525 47003574 47003445 1.320000e-42 185.0
56 TraesCS5D01G013100 chr7B 92.857 98 7 0 4937 5034 11439018 11439115 8.060000e-30 143.0
57 TraesCS5D01G013100 chr6A 89.630 135 14 0 1851 1985 591439824 591439690 1.030000e-38 172.0
58 TraesCS5D01G013100 chr5B 76.338 355 46 21 6871 7198 509856117 509855774 1.030000e-33 156.0
59 TraesCS5D01G013100 chr1D 94.898 98 5 0 4937 5034 4547599 4547502 3.720000e-33 154.0
60 TraesCS5D01G013100 chr1D 94.444 36 0 2 6767 6801 72503505 72503471 4.000000e-03 54.7
61 TraesCS5D01G013100 chr3A 92.857 98 7 0 4937 5034 11851849 11851946 8.060000e-30 143.0
62 TraesCS5D01G013100 chr2D 92.857 98 7 0 4937 5034 220629257 220629354 8.060000e-30 143.0
63 TraesCS5D01G013100 chr2B 92.857 98 7 0 4937 5034 73978957 73979054 8.060000e-30 143.0
64 TraesCS5D01G013100 chr3B 100.000 33 0 0 6763 6795 48617530 48617498 2.320000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G013100 chr5D 7013164 7020865 7701 True 14224.000000 14224 100.000000 1 7702 1 chr5D.!!$R1 7701
1 TraesCS5D01G013100 chr5D 1586984 1587747 763 False 280.500000 416 80.078500 6468 7192 2 chr5D.!!$F1 724
2 TraesCS5D01G013100 chr5A 2970633 2976427 5794 True 1495.200000 3511 90.391000 895 6630 5 chr5A.!!$R5 5735
3 TraesCS5D01G013100 chr5A 2891872 2899703 7831 True 1070.750000 3683 89.600750 895 7678 8 chr5A.!!$R3 6783
4 TraesCS5D01G013100 chr5A 2908545 2912460 3915 True 325.000000 387 84.607500 227 903 2 chr5A.!!$R4 676
5 TraesCS5D01G013100 chrUn 65424933 65431728 6795 False 772.790909 2503 90.682818 307 7217 11 chrUn.!!$F2 6910
6 TraesCS5D01G013100 chrUn 146275919 146276487 568 False 534.000000 534 84.483000 6045 6594 1 chrUn.!!$F1 549
7 TraesCS5D01G013100 chrUn 367562805 367563786 981 True 362.500000 462 83.331500 6 903 2 chrUn.!!$R2 897
8 TraesCS5D01G013100 chr4A 590181116 590185337 4221 True 269.000000 483 82.009500 2170 6388 4 chr4A.!!$R2 4218
9 TraesCS5D01G013100 chr4A 590113609 590114276 667 True 239.000000 239 74.133000 5188 5852 1 chr4A.!!$R1 664
10 TraesCS5D01G013100 chr1B 23215232 23219096 3864 True 367.000000 451 83.742000 6 903 3 chr1B.!!$R1 897
11 TraesCS5D01G013100 chr4D 12459746 12463958 4212 False 203.325000 283 84.829000 1842 6126 4 chr4D.!!$F1 4284
12 TraesCS5D01G013100 chr4B 23009999 23011354 1355 True 213.000000 259 83.263500 4523 5852 2 chr4B.!!$R3 1329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 6589 0.035725 AAATTTCGTCCGTCCCTCCC 60.036 55.0 0.00 0.0 0.00 4.30 F
1100 7272 0.108585 CCTCTCCTCTCCTCTCCTCG 59.891 65.0 0.00 0.0 0.00 4.63 F
2019 8566 0.036952 CCACCTACCACTCTGTGCTG 60.037 60.0 0.00 0.0 31.34 4.41 F
2024 8571 0.831711 TACCACTCTGTGCTGCCTCA 60.832 55.0 0.00 0.0 31.34 3.86 F
2251 8803 1.661341 GCATCAAGCTCGGAGACATT 58.339 50.0 9.69 0.0 41.15 2.71 F
3325 9995 0.962356 GTTGATGTGGTGGCAGAGGG 60.962 60.0 0.00 0.0 0.00 4.30 F
4465 11376 0.249573 CAGCACTGCAAAAACAGGGG 60.250 55.0 3.30 0.0 41.62 4.79 F
5614 12607 0.313672 GCAATTGCGGTGTCCAAGAA 59.686 50.0 15.87 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1333 7694 0.463474 GGCTGCATCTCAGGTTCTCC 60.463 60.000 0.50 0.00 43.06 3.71 R
2581 9138 0.957888 GTGAAGGTGAGGGCTTGAGC 60.958 60.000 0.00 0.00 41.14 4.26 R
3219 9889 0.511653 GGTTTTCTGTTCGAGACGCC 59.488 55.000 0.00 0.00 0.00 5.68 R
3313 9983 1.151899 AGGTAACCCTCTGCCACCA 60.152 57.895 0.00 0.00 35.62 4.17 R
3831 10504 2.416027 GCTTAAGCTTAAGTTGGGCAGC 60.416 50.000 35.14 22.08 41.63 5.25 R
4513 11426 2.603021 ACTTGTGCTCTGGAGAGAAGA 58.397 47.619 7.89 0.00 44.74 2.87 R
5687 12749 0.172352 CGTCCTGAGCTGTCTTCTCC 59.828 60.000 0.00 0.00 0.00 3.71 R
7583 15931 0.039165 GGCCCAAGAAGCTTTTGTCG 60.039 55.000 0.00 1.77 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 2942 2.969262 GGCAGACCTCTCCTAGCTTATT 59.031 50.000 0.00 0.00 0.00 1.40
77 2956 4.511786 AGCTTATTCCTTCCCCTCTTTC 57.488 45.455 0.00 0.00 0.00 2.62
78 2957 3.203263 AGCTTATTCCTTCCCCTCTTTCC 59.797 47.826 0.00 0.00 0.00 3.13
91 2970 2.163509 CTCTTTCCTCTCGTCCACTCA 58.836 52.381 0.00 0.00 0.00 3.41
93 2972 0.966920 TTTCCTCTCGTCCACTCACC 59.033 55.000 0.00 0.00 0.00 4.02
97 2976 0.039074 CTCTCGTCCACTCACCACAC 60.039 60.000 0.00 0.00 0.00 3.82
102 2981 2.032528 CCACTCACCACACCGCAT 59.967 61.111 0.00 0.00 0.00 4.73
117 2996 1.451936 GCATGCCCCGACTATCCTT 59.548 57.895 6.36 0.00 0.00 3.36
121 3000 1.363080 GCCCCGACTATCCTTCGTC 59.637 63.158 0.00 0.00 34.56 4.20
123 3002 0.754217 CCCCGACTATCCTTCGTCCA 60.754 60.000 0.00 0.00 34.56 4.02
127 3006 2.165845 CCGACTATCCTTCGTCCAAACT 59.834 50.000 0.00 0.00 34.56 2.66
143 3030 2.960129 CTACGCGGATCCAACGGC 60.960 66.667 23.64 13.04 0.00 5.68
146 3033 2.340453 TACGCGGATCCAACGGCTAC 62.340 60.000 23.64 0.00 34.70 3.58
147 3034 2.185867 GCGGATCCAACGGCTACA 59.814 61.111 13.41 0.00 34.19 2.74
164 3051 1.524621 CAGGCGACATGATCCCACC 60.525 63.158 0.00 0.00 0.00 4.61
217 3107 4.878397 GTGGTGTAGAGAAATCAAGGGATG 59.122 45.833 0.00 0.00 32.92 3.51
253 3144 3.149005 TCCAAATCGGCTAACAACCTT 57.851 42.857 0.00 0.00 33.14 3.50
344 6402 1.436326 GACCTTATCCCTTCCCCTCC 58.564 60.000 0.00 0.00 0.00 4.30
347 6405 2.226435 ACCTTATCCCTTCCCCTCCTTT 60.226 50.000 0.00 0.00 0.00 3.11
353 6411 1.372501 CCTTCCCCTCCTTTTCCTCA 58.627 55.000 0.00 0.00 0.00 3.86
359 6417 1.065126 CCCTCCTTTTCCTCATTCGCT 60.065 52.381 0.00 0.00 0.00 4.93
361 6419 1.929836 CTCCTTTTCCTCATTCGCTCG 59.070 52.381 0.00 0.00 0.00 5.03
390 6448 4.203076 CCCCCGACGATCGACCAC 62.203 72.222 24.34 8.98 43.74 4.16
401 6468 4.337060 CGACCACTGACCACGCGA 62.337 66.667 15.93 0.00 0.00 5.87
403 6470 1.374252 GACCACTGACCACGCGAAT 60.374 57.895 15.93 0.00 0.00 3.34
412 6479 3.118454 CACGCGAATCCAACGGCT 61.118 61.111 15.93 0.00 0.00 5.52
414 6481 3.118454 CGCGAATCCAACGGCTGT 61.118 61.111 0.00 0.00 0.00 4.40
430 6497 3.945436 GTGTGCGACACGATCCAA 58.055 55.556 0.00 0.00 39.53 3.53
446 6513 3.998672 AACGGTCCGCGTGGTCAT 61.999 61.111 16.01 0.00 36.30 3.06
454 6521 2.411701 GCGTGGTCATCGATCCGA 59.588 61.111 0.00 0.00 41.13 4.55
477 6544 1.297893 GGTAGTACGGTGTAGCGCG 60.298 63.158 0.00 0.00 0.00 6.86
483 6550 4.554363 CGGTGTAGCGCGGAGGAG 62.554 72.222 8.83 0.00 0.00 3.69
485 6552 4.874977 GTGTAGCGCGGAGGAGCC 62.875 72.222 8.83 0.00 40.14 4.70
510 6577 3.364964 CGTCCCTTTGTCCAGAAATTTCG 60.365 47.826 12.42 7.63 0.00 3.46
512 6579 3.818773 TCCCTTTGTCCAGAAATTTCGTC 59.181 43.478 12.42 5.51 0.00 4.20
513 6580 3.057526 CCCTTTGTCCAGAAATTTCGTCC 60.058 47.826 12.42 3.41 0.00 4.79
514 6581 3.364964 CCTTTGTCCAGAAATTTCGTCCG 60.365 47.826 12.42 3.25 0.00 4.79
515 6582 2.536761 TGTCCAGAAATTTCGTCCGT 57.463 45.000 12.42 0.00 0.00 4.69
522 6589 0.035725 AAATTTCGTCCGTCCCTCCC 60.036 55.000 0.00 0.00 0.00 4.30
523 6590 1.907222 AATTTCGTCCGTCCCTCCCC 61.907 60.000 0.00 0.00 0.00 4.81
524 6591 2.817420 ATTTCGTCCGTCCCTCCCCT 62.817 60.000 0.00 0.00 0.00 4.79
525 6592 4.753662 TCGTCCGTCCCTCCCCTG 62.754 72.222 0.00 0.00 0.00 4.45
530 6597 3.402681 CGTCCCTCCCCTGCATGT 61.403 66.667 0.00 0.00 0.00 3.21
540 6607 1.310933 CCCTGCATGTGCCTTCTCAC 61.311 60.000 2.07 0.00 41.18 3.51
551 6618 1.407258 GCCTTCTCACTCTACGCAGAT 59.593 52.381 0.00 0.00 0.00 2.90
553 6620 3.304391 GCCTTCTCACTCTACGCAGATAG 60.304 52.174 0.00 0.00 0.00 2.08
555 6622 2.852449 TCTCACTCTACGCAGATAGGG 58.148 52.381 0.00 0.00 0.00 3.53
557 6624 2.811431 CTCACTCTACGCAGATAGGGAG 59.189 54.545 0.00 0.00 0.00 4.30
565 6643 3.034635 ACGCAGATAGGGAGTCAAAGAT 58.965 45.455 0.00 0.00 0.00 2.40
567 6645 4.279671 ACGCAGATAGGGAGTCAAAGATAG 59.720 45.833 0.00 0.00 0.00 2.08
575 6653 4.086457 GGGAGTCAAAGATAGGCCAAAAA 58.914 43.478 5.01 0.00 0.00 1.94
576 6654 4.711846 GGGAGTCAAAGATAGGCCAAAAAT 59.288 41.667 5.01 0.00 0.00 1.82
577 6655 5.163509 GGGAGTCAAAGATAGGCCAAAAATC 60.164 44.000 5.01 2.14 0.00 2.17
578 6656 5.654209 GGAGTCAAAGATAGGCCAAAAATCT 59.346 40.000 5.01 4.73 0.00 2.40
579 6657 6.183360 GGAGTCAAAGATAGGCCAAAAATCTC 60.183 42.308 5.01 1.52 0.00 2.75
582 6660 6.151817 GTCAAAGATAGGCCAAAAATCTCACT 59.848 38.462 5.01 0.00 0.00 3.41
583 6661 6.375455 TCAAAGATAGGCCAAAAATCTCACTC 59.625 38.462 5.01 0.00 0.00 3.51
584 6662 5.707066 AGATAGGCCAAAAATCTCACTCT 57.293 39.130 5.01 0.00 0.00 3.24
589 6688 5.189180 AGGCCAAAAATCTCACTCTATGTC 58.811 41.667 5.01 0.00 0.00 3.06
591 6690 5.163713 GGCCAAAAATCTCACTCTATGTCAC 60.164 44.000 0.00 0.00 0.00 3.67
603 6702 3.445987 TCTATGTCACCACCACCATACA 58.554 45.455 0.00 0.00 0.00 2.29
604 6703 2.489938 ATGTCACCACCACCATACAC 57.510 50.000 0.00 0.00 0.00 2.90
607 6706 0.398696 TCACCACCACCATACACACC 59.601 55.000 0.00 0.00 0.00 4.16
608 6707 0.400213 CACCACCACCATACACACCT 59.600 55.000 0.00 0.00 0.00 4.00
611 6710 1.073125 CCACCACCATACACACCTTCA 59.927 52.381 0.00 0.00 0.00 3.02
612 6711 2.151202 CACCACCATACACACCTTCAC 58.849 52.381 0.00 0.00 0.00 3.18
614 6713 2.173782 ACCACCATACACACCTTCACAA 59.826 45.455 0.00 0.00 0.00 3.33
615 6714 3.181434 ACCACCATACACACCTTCACAAT 60.181 43.478 0.00 0.00 0.00 2.71
616 6715 4.042311 ACCACCATACACACCTTCACAATA 59.958 41.667 0.00 0.00 0.00 1.90
617 6716 4.394920 CCACCATACACACCTTCACAATAC 59.605 45.833 0.00 0.00 0.00 1.89
618 6717 5.245531 CACCATACACACCTTCACAATACT 58.754 41.667 0.00 0.00 0.00 2.12
619 6718 6.403049 CACCATACACACCTTCACAATACTA 58.597 40.000 0.00 0.00 0.00 1.82
624 6765 6.628919 ACACACCTTCACAATACTAAAACC 57.371 37.500 0.00 0.00 0.00 3.27
629 6770 7.124448 ACACCTTCACAATACTAAAACCCAAAA 59.876 33.333 0.00 0.00 0.00 2.44
635 6776 8.705594 TCACAATACTAAAACCCAAAATTTCCA 58.294 29.630 0.00 0.00 0.00 3.53
676 6821 0.821517 TGTGCCGTGTGTAGATAGGG 59.178 55.000 0.00 0.00 0.00 3.53
688 6833 5.424252 TGTGTAGATAGGGATTTCCGTTTCT 59.576 40.000 14.04 14.04 42.18 2.52
690 6835 5.659525 TGTAGATAGGGATTTCCGTTTCTGA 59.340 40.000 17.24 6.12 40.59 3.27
691 6836 5.024785 AGATAGGGATTTCCGTTTCTGAC 57.975 43.478 10.27 0.00 39.53 3.51
692 6837 4.717280 AGATAGGGATTTCCGTTTCTGACT 59.283 41.667 10.27 0.00 39.53 3.41
693 6838 3.336138 AGGGATTTCCGTTTCTGACTC 57.664 47.619 0.00 0.00 41.52 3.36
694 6839 2.027100 AGGGATTTCCGTTTCTGACTCC 60.027 50.000 0.00 0.00 41.52 3.85
695 6840 2.357075 GGATTTCCGTTTCTGACTCCC 58.643 52.381 0.00 0.00 0.00 4.30
774 6932 2.116125 GTGCCTGCCACCCTCTTT 59.884 61.111 0.00 0.00 38.55 2.52
775 6933 2.115910 TGCCTGCCACCCTCTTTG 59.884 61.111 0.00 0.00 0.00 2.77
776 6934 3.376918 GCCTGCCACCCTCTTTGC 61.377 66.667 0.00 0.00 0.00 3.68
777 6935 2.677875 CCTGCCACCCTCTTTGCC 60.678 66.667 0.00 0.00 0.00 4.52
778 6936 2.437897 CTGCCACCCTCTTTGCCT 59.562 61.111 0.00 0.00 0.00 4.75
779 6937 1.676967 CTGCCACCCTCTTTGCCTC 60.677 63.158 0.00 0.00 0.00 4.70
786 6944 2.586792 CTCTTTGCCTCCCTCCCG 59.413 66.667 0.00 0.00 0.00 5.14
816 6977 3.110705 CCATTCTTCCTCCTCCTCTTCA 58.889 50.000 0.00 0.00 0.00 3.02
905 7072 2.093973 TCTGCGGAGGTGAAAAGATCTC 60.094 50.000 3.37 0.00 0.00 2.75
957 7124 1.378762 CGGGCAAGGGGAAGAAAGA 59.621 57.895 0.00 0.00 0.00 2.52
978 7145 4.144727 GAGGCGGAGGGAGGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
979 7146 3.443479 AGGCGGAGGGAGGGAGAT 61.443 66.667 0.00 0.00 0.00 2.75
980 7147 2.920384 GGCGGAGGGAGGGAGATC 60.920 72.222 0.00 0.00 0.00 2.75
981 7148 2.920384 GCGGAGGGAGGGAGATCC 60.920 72.222 0.00 0.00 38.76 3.36
1100 7272 0.108585 CCTCTCCTCTCCTCTCCTCG 59.891 65.000 0.00 0.00 0.00 4.63
1113 7294 1.671901 CTCCTCGGTCCAGGCTTCTC 61.672 65.000 3.19 0.00 32.91 2.87
1198 7380 0.397957 GGGGTTCCTCTCCTCCTCTC 60.398 65.000 0.00 0.00 32.92 3.20
1206 7388 2.622942 CCTCTCCTCCTCTCAATTCGAG 59.377 54.545 0.00 0.00 43.80 4.04
1218 7400 4.750098 TCTCAATTCGAGTTCTTGGTTCAC 59.250 41.667 0.00 0.00 42.88 3.18
1226 7408 4.201910 CGAGTTCTTGGTTCACACATTGTT 60.202 41.667 0.00 0.00 0.00 2.83
1227 7409 5.248870 AGTTCTTGGTTCACACATTGTTC 57.751 39.130 0.00 0.00 0.00 3.18
1228 7410 4.704540 AGTTCTTGGTTCACACATTGTTCA 59.295 37.500 0.00 0.00 0.00 3.18
1229 7411 4.898829 TCTTGGTTCACACATTGTTCAG 57.101 40.909 0.00 0.00 0.00 3.02
1230 7412 4.522114 TCTTGGTTCACACATTGTTCAGA 58.478 39.130 0.00 0.00 0.00 3.27
1232 7414 3.615155 TGGTTCACACATTGTTCAGACA 58.385 40.909 0.00 0.00 0.00 3.41
1233 7415 4.206375 TGGTTCACACATTGTTCAGACAT 58.794 39.130 0.00 0.00 35.29 3.06
1234 7416 4.644234 TGGTTCACACATTGTTCAGACATT 59.356 37.500 0.00 0.00 35.29 2.71
1333 7694 2.606587 CCCCCTGGAGGAGGTGTTG 61.607 68.421 0.00 0.00 40.87 3.33
1336 7697 1.557269 CCCTGGAGGAGGTGTTGGAG 61.557 65.000 0.00 0.00 40.87 3.86
1486 7847 1.617018 CGCTCTCCTGGGTCATGGAA 61.617 60.000 0.00 0.00 31.23 3.53
1530 7891 2.435410 CGCCAACGGAGGGGTAAC 60.435 66.667 4.58 0.00 36.89 2.50
1546 7916 2.638363 GGTAACCCACCTCAACTTCTCT 59.362 50.000 0.00 0.00 44.79 3.10
1547 7917 3.306849 GGTAACCCACCTCAACTTCTCTC 60.307 52.174 0.00 0.00 44.79 3.20
1548 7918 2.103153 ACCCACCTCAACTTCTCTCA 57.897 50.000 0.00 0.00 0.00 3.27
1550 7920 2.104963 ACCCACCTCAACTTCTCTCAAC 59.895 50.000 0.00 0.00 0.00 3.18
1551 7921 2.551071 CCCACCTCAACTTCTCTCAACC 60.551 54.545 0.00 0.00 0.00 3.77
1553 7923 3.556004 CCACCTCAACTTCTCTCAACCTC 60.556 52.174 0.00 0.00 0.00 3.85
1554 7924 3.323403 CACCTCAACTTCTCTCAACCTCT 59.677 47.826 0.00 0.00 0.00 3.69
1555 7925 4.524714 CACCTCAACTTCTCTCAACCTCTA 59.475 45.833 0.00 0.00 0.00 2.43
1556 7926 5.186797 CACCTCAACTTCTCTCAACCTCTAT 59.813 44.000 0.00 0.00 0.00 1.98
1557 7927 5.420739 ACCTCAACTTCTCTCAACCTCTATC 59.579 44.000 0.00 0.00 0.00 2.08
1559 7929 6.183360 CCTCAACTTCTCTCAACCTCTATCTC 60.183 46.154 0.00 0.00 0.00 2.75
1563 7933 6.731467 ACTTCTCTCAACCTCTATCTCTCTT 58.269 40.000 0.00 0.00 0.00 2.85
1564 7934 6.828785 ACTTCTCTCAACCTCTATCTCTCTTC 59.171 42.308 0.00 0.00 0.00 2.87
1567 7937 7.054124 TCTCTCAACCTCTATCTCTCTTCTTC 58.946 42.308 0.00 0.00 0.00 2.87
1569 7939 7.410174 TCTCAACCTCTATCTCTCTTCTTCTT 58.590 38.462 0.00 0.00 0.00 2.52
1571 7941 6.605594 TCAACCTCTATCTCTCTTCTTCTTCC 59.394 42.308 0.00 0.00 0.00 3.46
1575 7945 7.062957 CCTCTATCTCTCTTCTTCTTCCTCTT 58.937 42.308 0.00 0.00 0.00 2.85
1582 7952 7.893302 TCTCTCTTCTTCTTCCTCTTATCTTGT 59.107 37.037 0.00 0.00 0.00 3.16
1604 7981 5.163612 TGTTTACTGCACTGCATACACAAAA 60.164 36.000 3.64 0.00 38.13 2.44
1605 7982 3.354089 ACTGCACTGCATACACAAAAC 57.646 42.857 3.64 0.00 38.13 2.43
1606 7983 2.034558 ACTGCACTGCATACACAAAACC 59.965 45.455 3.64 0.00 38.13 3.27
1607 7984 2.027385 TGCACTGCATACACAAAACCA 58.973 42.857 0.00 0.00 31.71 3.67
1613 7990 4.159506 ACTGCATACACAAAACCAACAGTT 59.840 37.500 0.00 0.00 41.81 3.16
1655 8032 5.064707 ACATCTTGTATGTATGCCGTGTTTC 59.935 40.000 0.00 0.00 0.00 2.78
1675 8052 1.230635 ACTGGAGATTGCGTGTGTGC 61.231 55.000 0.00 0.00 0.00 4.57
1713 8090 5.452777 GTTCCTCAACCTGAAAATTTCTCG 58.547 41.667 7.29 0.00 0.00 4.04
1757 8166 7.044798 AGGACAAGTGAATAAATCTGACTAGC 58.955 38.462 0.00 0.00 0.00 3.42
1791 8201 7.535599 GCTTAGAAACTTACAGTTCAAGATTGC 59.464 37.037 8.61 0.00 37.47 3.56
1816 8358 8.784176 GCACAATGTAACATTTGTTTTGTTTTC 58.216 29.630 8.52 1.19 35.52 2.29
2014 8561 2.125512 GCGCCACCTACCACTCTG 60.126 66.667 0.00 0.00 0.00 3.35
2016 8563 1.079819 CGCCACCTACCACTCTGTG 60.080 63.158 0.00 0.00 0.00 3.66
2017 8564 1.376037 GCCACCTACCACTCTGTGC 60.376 63.158 0.00 0.00 31.34 4.57
2018 8565 1.831652 GCCACCTACCACTCTGTGCT 61.832 60.000 0.00 0.00 31.34 4.40
2019 8566 0.036952 CCACCTACCACTCTGTGCTG 60.037 60.000 0.00 0.00 31.34 4.41
2024 8571 0.831711 TACCACTCTGTGCTGCCTCA 60.832 55.000 0.00 0.00 31.34 3.86
2039 8586 2.284190 GCCTCAGTTTCAGTATGCCTC 58.716 52.381 0.00 0.00 34.76 4.70
2040 8587 2.355108 GCCTCAGTTTCAGTATGCCTCA 60.355 50.000 0.00 0.00 34.76 3.86
2041 8588 3.265791 CCTCAGTTTCAGTATGCCTCAC 58.734 50.000 0.00 0.00 34.76 3.51
2043 8590 4.160439 CCTCAGTTTCAGTATGCCTCACTA 59.840 45.833 0.00 0.00 34.76 2.74
2048 8595 1.950216 TCAGTATGCCTCACTAGCGAG 59.050 52.381 0.45 0.45 34.76 5.03
2052 8599 3.952323 AGTATGCCTCACTAGCGAGTTTA 59.048 43.478 7.00 0.00 31.73 2.01
2053 8600 2.649331 TGCCTCACTAGCGAGTTTAC 57.351 50.000 7.00 0.00 31.73 2.01
2056 8603 2.666994 GCCTCACTAGCGAGTTTACAAC 59.333 50.000 7.00 0.00 31.73 3.32
2058 8605 4.557205 CCTCACTAGCGAGTTTACAACTT 58.443 43.478 7.00 0.00 43.03 2.66
2059 8606 4.989168 CCTCACTAGCGAGTTTACAACTTT 59.011 41.667 7.00 0.00 43.03 2.66
2060 8607 6.154445 CCTCACTAGCGAGTTTACAACTTTA 58.846 40.000 7.00 0.00 43.03 1.85
2061 8608 6.308282 CCTCACTAGCGAGTTTACAACTTTAG 59.692 42.308 7.00 0.00 43.03 1.85
2062 8609 6.973843 TCACTAGCGAGTTTACAACTTTAGA 58.026 36.000 0.00 0.00 43.03 2.10
2063 8610 7.600065 TCACTAGCGAGTTTACAACTTTAGAT 58.400 34.615 0.00 0.26 43.03 1.98
2064 8611 8.086522 TCACTAGCGAGTTTACAACTTTAGATT 58.913 33.333 0.00 0.00 43.03 2.40
2065 8612 8.709646 CACTAGCGAGTTTACAACTTTAGATTT 58.290 33.333 0.00 0.00 43.03 2.17
2066 8613 8.709646 ACTAGCGAGTTTACAACTTTAGATTTG 58.290 33.333 0.00 0.00 43.03 2.32
2067 8614 7.492352 AGCGAGTTTACAACTTTAGATTTGT 57.508 32.000 0.00 0.00 43.03 2.83
2069 8616 6.086371 GCGAGTTTACAACTTTAGATTTGTGC 59.914 38.462 0.00 0.00 43.03 4.57
2072 8619 7.352739 AGTTTACAACTTTAGATTTGTGCGAG 58.647 34.615 0.00 0.00 39.04 5.03
2073 8620 4.147219 ACAACTTTAGATTTGTGCGAGC 57.853 40.909 0.00 0.00 34.61 5.03
2075 8622 2.084546 ACTTTAGATTTGTGCGAGCCC 58.915 47.619 0.00 0.00 0.00 5.19
2076 8623 2.083774 CTTTAGATTTGTGCGAGCCCA 58.916 47.619 0.00 0.00 0.00 5.36
2077 8624 2.418368 TTAGATTTGTGCGAGCCCAT 57.582 45.000 0.00 0.00 0.00 4.00
2078 8625 2.418368 TAGATTTGTGCGAGCCCATT 57.582 45.000 0.00 0.00 0.00 3.16
2079 8626 2.418368 AGATTTGTGCGAGCCCATTA 57.582 45.000 0.00 0.00 0.00 1.90
2080 8627 2.722094 AGATTTGTGCGAGCCCATTAA 58.278 42.857 0.00 0.00 0.00 1.40
2081 8628 3.290710 AGATTTGTGCGAGCCCATTAAT 58.709 40.909 0.00 0.00 0.00 1.40
2083 8630 3.502191 TTTGTGCGAGCCCATTAATTC 57.498 42.857 0.00 0.00 0.00 2.17
2085 8632 2.441410 TGTGCGAGCCCATTAATTCAA 58.559 42.857 0.00 0.00 0.00 2.69
2086 8633 2.822561 TGTGCGAGCCCATTAATTCAAA 59.177 40.909 0.00 0.00 0.00 2.69
2087 8634 3.256879 TGTGCGAGCCCATTAATTCAAAA 59.743 39.130 0.00 0.00 0.00 2.44
2088 8635 3.859386 GTGCGAGCCCATTAATTCAAAAG 59.141 43.478 0.00 0.00 0.00 2.27
2089 8636 3.509575 TGCGAGCCCATTAATTCAAAAGT 59.490 39.130 0.00 0.00 0.00 2.66
2092 8639 5.335127 CGAGCCCATTAATTCAAAAGTCTG 58.665 41.667 0.00 0.00 0.00 3.51
2094 8641 6.349280 CGAGCCCATTAATTCAAAAGTCTGAA 60.349 38.462 0.00 0.00 39.56 3.02
2112 8659 9.730705 AAGTCTGAATTTGACATAATCTTCAGA 57.269 29.630 8.32 8.32 40.87 3.27
2136 8687 3.640407 TGTCCCAGCAGAGCCCAC 61.640 66.667 0.00 0.00 0.00 4.61
2160 8711 6.048073 TCACAAGTCTGAATTTTTCTGTCG 57.952 37.500 0.00 0.00 0.00 4.35
2251 8803 1.661341 GCATCAAGCTCGGAGACATT 58.339 50.000 9.69 0.00 41.15 2.71
2275 8827 2.894387 GCAGATGCACGCCTCCTC 60.894 66.667 0.00 0.00 41.59 3.71
2336 8888 4.632153 TCCACTCTTCTTGACTTGCTAAC 58.368 43.478 0.00 0.00 0.00 2.34
2337 8889 4.100963 TCCACTCTTCTTGACTTGCTAACA 59.899 41.667 0.00 0.00 0.00 2.41
2340 8892 6.216569 CACTCTTCTTGACTTGCTAACACTA 58.783 40.000 0.00 0.00 0.00 2.74
2342 8894 7.062839 CACTCTTCTTGACTTGCTAACACTATC 59.937 40.741 0.00 0.00 0.00 2.08
2344 8896 6.868864 TCTTCTTGACTTGCTAACACTATCAC 59.131 38.462 0.00 0.00 0.00 3.06
2346 8898 6.159293 TCTTGACTTGCTAACACTATCACTG 58.841 40.000 0.00 0.00 0.00 3.66
2581 9138 2.375173 GCCATTTTCAGAAGGCAAGG 57.625 50.000 6.97 0.00 46.26 3.61
2607 9164 1.965318 GCCCTCACCTTCACCTAGCTA 60.965 57.143 0.00 0.00 0.00 3.32
2610 9167 3.070302 CCCTCACCTTCACCTAGCTAATC 59.930 52.174 0.00 0.00 0.00 1.75
3219 9889 2.104451 AGTGATTCTCATGGCTGCTAGG 59.896 50.000 0.00 0.00 0.00 3.02
3308 9978 6.350629 AGAGGTACCGTACAATACTTTGTT 57.649 37.500 6.18 0.00 43.57 2.83
3313 9983 6.369615 GGTACCGTACAATACTTTGTTGATGT 59.630 38.462 10.81 0.00 43.57 3.06
3315 9985 5.180492 ACCGTACAATACTTTGTTGATGTGG 59.820 40.000 0.00 0.00 43.57 4.17
3323 9993 1.608055 TTGTTGATGTGGTGGCAGAG 58.392 50.000 0.00 0.00 0.00 3.35
3325 9995 0.962356 GTTGATGTGGTGGCAGAGGG 60.962 60.000 0.00 0.00 0.00 4.30
3492 10164 1.435577 GTGTTAGTAAGGGTGCACCG 58.564 55.000 29.08 0.00 46.96 4.94
3542 10214 7.717436 TGTTTTCATATTGATATCCCAGCGTTA 59.283 33.333 0.00 0.00 0.00 3.18
3575 10247 9.388506 GGAAGGACATATTATACTCATGATTGG 57.611 37.037 0.00 0.00 0.00 3.16
3576 10248 8.798859 AAGGACATATTATACTCATGATTGGC 57.201 34.615 0.00 0.00 0.00 4.52
3727 10400 7.721842 TCAGGTGAGAAAAATTACAATGTACCA 59.278 33.333 0.00 0.00 0.00 3.25
3749 10422 6.070881 ACCATCTATCTTAGGCTGCTATTCAG 60.071 42.308 0.00 0.00 45.62 3.02
3757 10430 4.760530 AGGCTGCTATTCAGTATCAACA 57.239 40.909 0.00 0.00 44.66 3.33
3759 10432 4.406972 AGGCTGCTATTCAGTATCAACAGA 59.593 41.667 0.00 0.00 44.66 3.41
3761 10434 5.355596 GCTGCTATTCAGTATCAACAGAGT 58.644 41.667 0.00 0.00 44.66 3.24
3762 10435 5.814705 GCTGCTATTCAGTATCAACAGAGTT 59.185 40.000 0.00 0.00 44.66 3.01
3764 10437 6.935167 TGCTATTCAGTATCAACAGAGTTCA 58.065 36.000 0.00 0.00 0.00 3.18
3765 10438 7.038048 TGCTATTCAGTATCAACAGAGTTCAG 58.962 38.462 0.00 0.00 0.00 3.02
3766 10439 7.038659 GCTATTCAGTATCAACAGAGTTCAGT 58.961 38.462 0.00 0.00 0.00 3.41
3767 10440 7.221838 GCTATTCAGTATCAACAGAGTTCAGTC 59.778 40.741 0.00 0.00 0.00 3.51
3768 10441 6.405278 TTCAGTATCAACAGAGTTCAGTCA 57.595 37.500 0.00 0.00 0.00 3.41
3770 10443 5.536538 TCAGTATCAACAGAGTTCAGTCAGT 59.463 40.000 0.00 0.00 0.00 3.41
3831 10504 1.479323 CTTGTCCATGCAAATGGGAGG 59.521 52.381 6.50 0.00 41.95 4.30
3832 10505 0.971959 TGTCCATGCAAATGGGAGGC 60.972 55.000 6.50 0.00 41.95 4.70
3836 10509 2.062177 ATGCAAATGGGAGGCTGCC 61.062 57.895 19.41 19.41 33.78 4.85
3887 10560 3.704566 ACAATCTGGCTTCCGTATCTGTA 59.295 43.478 0.00 0.00 0.00 2.74
3888 10561 4.345257 ACAATCTGGCTTCCGTATCTGTAT 59.655 41.667 0.00 0.00 0.00 2.29
3890 10563 3.562182 TCTGGCTTCCGTATCTGTATCA 58.438 45.455 0.00 0.00 0.00 2.15
3891 10564 3.570125 TCTGGCTTCCGTATCTGTATCAG 59.430 47.826 0.00 0.00 0.00 2.90
3892 10565 3.296854 TGGCTTCCGTATCTGTATCAGT 58.703 45.455 0.00 0.00 32.61 3.41
3894 10567 4.891168 TGGCTTCCGTATCTGTATCAGTTA 59.109 41.667 0.00 0.00 32.61 2.24
3895 10568 5.009710 TGGCTTCCGTATCTGTATCAGTTAG 59.990 44.000 0.00 0.00 32.61 2.34
3896 10569 5.241064 GGCTTCCGTATCTGTATCAGTTAGA 59.759 44.000 0.00 0.00 32.61 2.10
3898 10571 6.630444 TTCCGTATCTGTATCAGTTAGACC 57.370 41.667 0.00 0.00 32.61 3.85
3899 10572 5.687780 TCCGTATCTGTATCAGTTAGACCA 58.312 41.667 0.00 0.00 32.61 4.02
3919 10592 7.773149 AGACCATTATAATGACTATCGTAGGC 58.227 38.462 24.17 8.34 38.70 3.93
3969 10645 8.322906 TCTGTTTTTGGTATGTGTCATCTTAG 57.677 34.615 0.00 0.00 0.00 2.18
3972 10648 4.729227 TTGGTATGTGTCATCTTAGCGA 57.271 40.909 0.00 0.00 0.00 4.93
3973 10649 4.307443 TGGTATGTGTCATCTTAGCGAG 57.693 45.455 0.00 0.00 0.00 5.03
3974 10650 3.699538 TGGTATGTGTCATCTTAGCGAGT 59.300 43.478 0.00 0.00 0.00 4.18
3975 10651 4.045104 GGTATGTGTCATCTTAGCGAGTG 58.955 47.826 0.00 0.00 0.00 3.51
3976 10652 3.876274 ATGTGTCATCTTAGCGAGTGT 57.124 42.857 0.00 0.00 0.00 3.55
3977 10653 4.983671 ATGTGTCATCTTAGCGAGTGTA 57.016 40.909 0.00 0.00 0.00 2.90
3978 10654 4.983671 TGTGTCATCTTAGCGAGTGTAT 57.016 40.909 0.00 0.00 0.00 2.29
3991 10667 4.406003 AGCGAGTGTATTATCCTGTCCTTT 59.594 41.667 0.00 0.00 0.00 3.11
4142 10818 5.647658 TGGTGTTAATGTCAAGATGATCACC 59.352 40.000 0.00 0.00 41.01 4.02
4191 10867 8.989980 AGAAAAGAAGTAATAGTTTCAGTTCCG 58.010 33.333 0.00 0.00 31.94 4.30
4203 10914 6.644347 AGTTTCAGTTCCGATTATGTCTGAT 58.356 36.000 0.00 0.00 33.10 2.90
4212 10923 5.245977 TCCGATTATGTCTGATGCATTCCTA 59.754 40.000 0.00 0.00 0.00 2.94
4221 10932 6.479990 TGTCTGATGCATTCCTATTAACTTCG 59.520 38.462 0.00 0.00 0.00 3.79
4241 11088 7.653647 ACTTCGATGTGGCTTGTTTTATTTTA 58.346 30.769 2.72 0.00 0.00 1.52
4465 11376 0.249573 CAGCACTGCAAAAACAGGGG 60.250 55.000 3.30 0.00 41.62 4.79
4494 11407 9.238368 TGGGAGAACGAACAAATATTTAATTCT 57.762 29.630 16.51 13.06 0.00 2.40
4513 11426 9.599866 TTAATTCTACATTGATCGAGTGATTGT 57.400 29.630 0.00 0.00 34.09 2.71
4514 11427 7.706281 ATTCTACATTGATCGAGTGATTGTC 57.294 36.000 0.00 0.00 34.09 3.18
4517 11430 6.975197 TCTACATTGATCGAGTGATTGTCTTC 59.025 38.462 0.00 0.00 34.09 2.87
4577 11490 0.518636 CACGAAAGCACATCTGTGGG 59.481 55.000 11.98 0.00 45.72 4.61
4911 11871 8.463930 TTTCTTGTGTTTCACCTCTGAATTAT 57.536 30.769 0.00 0.00 36.26 1.28
4924 11884 5.694006 CCTCTGAATTATTACTTCCAGAGCG 59.306 44.000 12.38 5.50 32.52 5.03
4937 11897 2.425668 TCCAGAGCGATACATGTTTCGA 59.574 45.455 33.45 14.92 36.40 3.71
4944 11904 4.811024 AGCGATACATGTTTCGATCACATT 59.189 37.500 33.45 12.33 36.40 2.71
4950 11910 9.935682 GATACATGTTTCGATCACATTATTTGT 57.064 29.630 2.30 7.15 39.91 2.83
5091 12052 8.731605 TCTGTACGCATAAATGTTTTTGGAATA 58.268 29.630 0.00 0.00 0.00 1.75
5092 12053 9.515020 CTGTACGCATAAATGTTTTTGGAATAT 57.485 29.630 0.00 0.00 0.00 1.28
5251 12212 0.768622 TTCCACCGTTCATGGTCCTT 59.231 50.000 0.00 0.00 41.38 3.36
5372 12360 7.773864 TTAACTATTTGTCGTGAACTTGTGA 57.226 32.000 0.00 0.00 0.00 3.58
5551 12539 2.158579 ACTTTTTCCCGGTAAGGAGCAA 60.159 45.455 0.00 0.00 45.00 3.91
5614 12607 0.313672 GCAATTGCGGTGTCCAAGAA 59.686 50.000 15.87 0.00 0.00 2.52
5687 12749 3.624326 TTGTTTCATGTCGAAAGCCTG 57.376 42.857 0.00 0.00 44.26 4.85
5780 12842 2.902486 AGCTCTCATCTTTGTCACCAGA 59.098 45.455 0.00 0.00 0.00 3.86
6168 13277 0.751643 GTCGGGCCATTTACCATGCT 60.752 55.000 4.39 0.00 0.00 3.79
6169 13278 0.751277 TCGGGCCATTTACCATGCTG 60.751 55.000 4.39 0.00 0.00 4.41
6170 13279 1.442987 GGGCCATTTACCATGCTGC 59.557 57.895 4.39 0.00 0.00 5.25
6177 13286 3.243301 CCATTTACCATGCTGCATGACTC 60.243 47.826 36.90 0.00 43.81 3.36
6205 13320 6.690194 ATGTTCATCTTTCTGTAGATTGCC 57.310 37.500 0.00 0.00 32.60 4.52
6401 13522 4.750098 GGTACGTAGGACCAATCAATCATG 59.250 45.833 0.00 0.00 36.91 3.07
6435 13593 4.449229 GCATATAATTTCCCCTGGTCCCTT 60.449 45.833 0.00 0.00 0.00 3.95
6436 13594 3.688049 ATAATTTCCCCTGGTCCCTTG 57.312 47.619 0.00 0.00 0.00 3.61
6438 13596 0.704664 ATTTCCCCTGGTCCCTTGTC 59.295 55.000 0.00 0.00 0.00 3.18
6441 13599 2.928396 CCCTGGTCCCTTGTCGGT 60.928 66.667 0.00 0.00 0.00 4.69
6442 13600 2.663196 CCTGGTCCCTTGTCGGTC 59.337 66.667 0.00 0.00 0.00 4.79
6444 13602 3.296709 CTGGTCCCTTGTCGGTCCG 62.297 68.421 4.39 4.39 0.00 4.79
6445 13603 4.078516 GGTCCCTTGTCGGTCCGG 62.079 72.222 12.29 0.00 0.00 5.14
6448 13606 4.760047 CCCTTGTCGGTCCGGCTG 62.760 72.222 18.28 9.79 30.55 4.85
6450 13608 2.432628 CTTGTCGGTCCGGCTGTC 60.433 66.667 18.28 1.38 30.55 3.51
6457 13615 3.003763 GTCCGGCTGTCCCTCCTT 61.004 66.667 0.00 0.00 0.00 3.36
6458 13616 2.203938 TCCGGCTGTCCCTCCTTT 60.204 61.111 0.00 0.00 0.00 3.11
6459 13617 2.269241 CCGGCTGTCCCTCCTTTC 59.731 66.667 0.00 0.00 0.00 2.62
6460 13618 2.125512 CGGCTGTCCCTCCTTTCG 60.126 66.667 0.00 0.00 0.00 3.46
6461 13619 2.436824 GGCTGTCCCTCCTTTCGC 60.437 66.667 0.00 0.00 0.00 4.70
6462 13620 2.436824 GCTGTCCCTCCTTTCGCC 60.437 66.667 0.00 0.00 0.00 5.54
6463 13621 2.269241 CTGTCCCTCCTTTCGCCC 59.731 66.667 0.00 0.00 0.00 6.13
6464 13622 3.327404 TGTCCCTCCTTTCGCCCC 61.327 66.667 0.00 0.00 0.00 5.80
6465 13623 3.009714 GTCCCTCCTTTCGCCCCT 61.010 66.667 0.00 0.00 0.00 4.79
6466 13624 2.687566 TCCCTCCTTTCGCCCCTC 60.688 66.667 0.00 0.00 0.00 4.30
6467 13625 3.009115 CCCTCCTTTCGCCCCTCA 61.009 66.667 0.00 0.00 0.00 3.86
6468 13626 2.378634 CCCTCCTTTCGCCCCTCAT 61.379 63.158 0.00 0.00 0.00 2.90
6469 13627 1.609783 CCTCCTTTCGCCCCTCATT 59.390 57.895 0.00 0.00 0.00 2.57
6470 13628 0.749454 CCTCCTTTCGCCCCTCATTG 60.749 60.000 0.00 0.00 0.00 2.82
6471 13629 1.378514 TCCTTTCGCCCCTCATTGC 60.379 57.895 0.00 0.00 0.00 3.56
6491 13649 3.147629 GCCTCATGAATTCATCTCTGGG 58.852 50.000 18.16 14.99 33.61 4.45
6551 13714 3.242870 GCAGGCAATAGTGACATAAGCAC 60.243 47.826 0.00 0.00 33.83 4.40
6716 13881 2.224018 GGTCTGATGATCTGAGCTGTCC 60.224 54.545 19.83 7.09 38.99 4.02
6717 13882 2.429971 GTCTGATGATCTGAGCTGTCCA 59.570 50.000 2.03 0.00 0.00 4.02
6718 13883 2.694109 TCTGATGATCTGAGCTGTCCAG 59.306 50.000 0.00 0.00 0.00 3.86
6719 13884 1.761198 TGATGATCTGAGCTGTCCAGG 59.239 52.381 0.00 0.00 32.73 4.45
6720 13885 2.037901 GATGATCTGAGCTGTCCAGGA 58.962 52.381 0.00 0.00 32.73 3.86
6721 13886 1.482954 TGATCTGAGCTGTCCAGGAG 58.517 55.000 0.00 0.00 32.73 3.69
6722 13887 1.006400 TGATCTGAGCTGTCCAGGAGA 59.994 52.381 0.00 0.00 32.73 3.71
6723 13888 2.106566 GATCTGAGCTGTCCAGGAGAA 58.893 52.381 0.00 0.00 32.73 2.87
6724 13889 2.015456 TCTGAGCTGTCCAGGAGAAA 57.985 50.000 0.00 0.00 32.73 2.52
6725 13890 2.329267 TCTGAGCTGTCCAGGAGAAAA 58.671 47.619 0.00 0.00 32.73 2.29
6726 13891 2.705658 TCTGAGCTGTCCAGGAGAAAAA 59.294 45.455 0.00 0.00 32.73 1.94
6754 13919 5.333581 GGAAATCCCTCCCTAATTTATGGG 58.666 45.833 4.93 4.93 44.66 4.00
6755 13920 5.162870 GGAAATCCCTCCCTAATTTATGGGT 60.163 44.000 9.68 0.00 43.74 4.51
6756 13921 6.369927 AAATCCCTCCCTAATTTATGGGTT 57.630 37.500 9.68 0.00 43.74 4.11
6757 13922 7.423275 GGAAATCCCTCCCTAATTTATGGGTTA 60.423 40.741 9.68 0.00 43.74 2.85
6758 13923 5.917545 TCCCTCCCTAATTTATGGGTTAC 57.082 43.478 9.68 0.00 43.74 2.50
6759 13924 4.666431 TCCCTCCCTAATTTATGGGTTACC 59.334 45.833 9.68 0.00 43.74 2.85
6760 13925 4.506095 CCCTCCCTAATTTATGGGTTACCG 60.506 50.000 9.68 0.00 43.74 4.02
6761 13926 4.103627 CCTCCCTAATTTATGGGTTACCGT 59.896 45.833 9.68 0.00 43.74 4.83
6795 14003 3.006247 GTGGATCCTCTTCTTTGCTGTC 58.994 50.000 14.23 0.00 0.00 3.51
6828 14036 2.285220 TGTAATCGTCCGCGTAGTACTC 59.715 50.000 4.92 0.00 39.49 2.59
6829 14037 0.302890 AATCGTCCGCGTAGTACTCG 59.697 55.000 4.92 5.70 39.49 4.18
6830 14038 0.528466 ATCGTCCGCGTAGTACTCGA 60.528 55.000 14.03 10.14 39.49 4.04
6834 14042 1.012889 CCGCGTAGTACTCGACGAC 60.013 63.158 19.74 10.99 43.34 4.34
6845 14053 4.749099 AGTACTCGACGACACATATCTACC 59.251 45.833 0.00 0.00 0.00 3.18
6913 14121 4.657077 GGCGTCGCCGTATTTTTC 57.343 55.556 22.50 0.00 39.62 2.29
6914 14122 2.084013 GGCGTCGCCGTATTTTTCT 58.916 52.632 22.50 0.00 39.62 2.52
6916 14124 1.528400 GGCGTCGCCGTATTTTTCTTC 60.528 52.381 22.50 0.00 39.62 2.87
6917 14125 1.392510 GCGTCGCCGTATTTTTCTTCT 59.607 47.619 5.75 0.00 36.15 2.85
6918 14126 2.159747 GCGTCGCCGTATTTTTCTTCTT 60.160 45.455 5.75 0.00 36.15 2.52
6919 14127 3.656618 CGTCGCCGTATTTTTCTTCTTC 58.343 45.455 0.00 0.00 0.00 2.87
6920 14128 3.367025 CGTCGCCGTATTTTTCTTCTTCT 59.633 43.478 0.00 0.00 0.00 2.85
6921 14129 4.143179 CGTCGCCGTATTTTTCTTCTTCTT 60.143 41.667 0.00 0.00 0.00 2.52
6922 14130 5.314409 GTCGCCGTATTTTTCTTCTTCTTC 58.686 41.667 0.00 0.00 0.00 2.87
6923 14131 5.120363 GTCGCCGTATTTTTCTTCTTCTTCT 59.880 40.000 0.00 0.00 0.00 2.85
6924 14132 5.699458 TCGCCGTATTTTTCTTCTTCTTCTT 59.301 36.000 0.00 0.00 0.00 2.52
6925 14133 6.016111 CGCCGTATTTTTCTTCTTCTTCTTC 58.984 40.000 0.00 0.00 0.00 2.87
6926 14134 6.128526 CGCCGTATTTTTCTTCTTCTTCTTCT 60.129 38.462 0.00 0.00 0.00 2.85
6927 14135 7.571428 CGCCGTATTTTTCTTCTTCTTCTTCTT 60.571 37.037 0.00 0.00 0.00 2.52
6928 14136 7.746916 GCCGTATTTTTCTTCTTCTTCTTCTTC 59.253 37.037 0.00 0.00 0.00 2.87
6929 14137 8.994170 CCGTATTTTTCTTCTTCTTCTTCTTCT 58.006 33.333 0.00 0.00 0.00 2.85
7023 14284 2.224670 TGGATAAATCGGGTATGGTGGC 60.225 50.000 0.00 0.00 0.00 5.01
7024 14285 2.039879 GGATAAATCGGGTATGGTGGCT 59.960 50.000 0.00 0.00 0.00 4.75
7039 14300 2.421314 GCTTGTTTGTGGGGGCAC 59.579 61.111 0.00 0.00 0.00 5.01
7156 14444 4.796038 ATATATTTGCCTGCCATGCTTC 57.204 40.909 0.00 0.00 0.00 3.86
7174 14464 0.038251 TCTGTGTCGGTGACAGATGC 60.038 55.000 0.00 0.00 43.89 3.91
7175 14465 0.319813 CTGTGTCGGTGACAGATGCA 60.320 55.000 0.00 0.00 43.57 3.96
7176 14466 0.319813 TGTGTCGGTGACAGATGCAG 60.320 55.000 0.00 0.00 43.57 4.41
7177 14467 0.319900 GTGTCGGTGACAGATGCAGT 60.320 55.000 0.00 0.00 43.57 4.40
7241 15579 5.708877 TGATCAATTCAGCAACATGTTCA 57.291 34.783 8.48 0.00 0.00 3.18
7333 15671 4.751767 AGGGCAACATGAAAACTGAAAA 57.248 36.364 0.00 0.00 39.74 2.29
7340 15678 4.936891 ACATGAAAACTGAAAACAGAGCC 58.063 39.130 0.00 0.00 0.00 4.70
7346 15684 2.508526 ACTGAAAACAGAGCCATGGAC 58.491 47.619 18.40 8.70 0.00 4.02
7349 15687 4.263462 ACTGAAAACAGAGCCATGGACATA 60.263 41.667 18.40 0.00 0.00 2.29
7350 15688 4.858850 TGAAAACAGAGCCATGGACATAT 58.141 39.130 18.40 0.00 0.00 1.78
7351 15689 4.641541 TGAAAACAGAGCCATGGACATATG 59.358 41.667 18.40 10.42 0.00 1.78
7352 15690 4.508551 AAACAGAGCCATGGACATATGA 57.491 40.909 18.40 0.00 0.00 2.15
7353 15691 4.719026 AACAGAGCCATGGACATATGAT 57.281 40.909 18.40 0.00 0.00 2.45
7354 15692 5.830799 AACAGAGCCATGGACATATGATA 57.169 39.130 18.40 0.00 0.00 2.15
7355 15693 6.384342 AACAGAGCCATGGACATATGATAT 57.616 37.500 18.40 0.00 0.00 1.63
7390 15728 4.433186 TTGACAAGTTTCTTGTGTGTGG 57.567 40.909 17.88 0.00 31.96 4.17
7393 15731 2.752903 ACAAGTTTCTTGTGTGTGGGTC 59.247 45.455 13.26 0.00 0.00 4.46
7397 15735 1.628238 TTCTTGTGTGTGGGTCCGGT 61.628 55.000 0.00 0.00 0.00 5.28
7398 15736 1.597027 CTTGTGTGTGGGTCCGGTC 60.597 63.158 0.00 0.00 0.00 4.79
7399 15737 3.109592 TTGTGTGTGGGTCCGGTCC 62.110 63.158 9.52 9.52 0.00 4.46
7400 15738 4.675029 GTGTGTGGGTCCGGTCCG 62.675 72.222 11.79 3.60 0.00 4.79
7401 15739 4.918278 TGTGTGGGTCCGGTCCGA 62.918 66.667 14.39 4.83 0.00 4.55
7410 15748 2.045242 CCGGTCCGACAGAGGAGA 60.045 66.667 14.39 0.00 41.68 3.71
7424 15762 4.346418 ACAGAGGAGAAACACAAGAGATGT 59.654 41.667 0.00 0.00 45.34 3.06
7425 15763 4.928615 CAGAGGAGAAACACAAGAGATGTC 59.071 45.833 0.00 0.00 41.46 3.06
7431 15769 0.671781 ACACAAGAGATGTCGCTGCC 60.672 55.000 0.00 0.00 41.46 4.85
7436 15774 1.812922 GAGATGTCGCTGCCCAGTG 60.813 63.158 2.51 2.51 40.15 3.66
7517 15855 1.967319 TGGCAGTCCAAGTCAAAGTC 58.033 50.000 0.00 0.00 39.99 3.01
7518 15856 1.239347 GGCAGTCCAAGTCAAAGTCC 58.761 55.000 0.00 0.00 0.00 3.85
7519 15857 1.476833 GGCAGTCCAAGTCAAAGTCCA 60.477 52.381 0.00 0.00 0.00 4.02
7520 15858 2.297701 GCAGTCCAAGTCAAAGTCCAA 58.702 47.619 0.00 0.00 0.00 3.53
7521 15859 2.291741 GCAGTCCAAGTCAAAGTCCAAG 59.708 50.000 0.00 0.00 0.00 3.61
7522 15860 3.545703 CAGTCCAAGTCAAAGTCCAAGT 58.454 45.455 0.00 0.00 0.00 3.16
7526 15864 1.002468 CAAGTCAAAGTCCAAGTGCGG 60.002 52.381 0.00 0.00 0.00 5.69
7540 15878 4.475944 CAAGTGCGGAAAATAACTCCTTG 58.524 43.478 0.00 0.00 0.00 3.61
7550 15888 0.036732 TAACTCCTTGGCAGCCTGTG 59.963 55.000 14.15 4.96 0.00 3.66
7563 15901 2.422479 CAGCCTGTGACCATCTTTGATG 59.578 50.000 0.92 0.92 0.00 3.07
7569 15917 1.065491 TGACCATCTTTGATGTCCCGG 60.065 52.381 0.00 0.00 0.00 5.73
7575 15923 0.881118 CTTTGATGTCCCGGTGTTGG 59.119 55.000 0.00 0.00 0.00 3.77
7578 15926 2.282180 ATGTCCCGGTGTTGGTGC 60.282 61.111 0.00 0.00 0.00 5.01
7579 15927 3.860930 ATGTCCCGGTGTTGGTGCC 62.861 63.158 0.00 0.00 0.00 5.01
7583 15931 3.045492 CCGGTGTTGGTGCCGTAC 61.045 66.667 0.00 0.00 45.91 3.67
7603 15951 1.039856 GACAAAAGCTTCTTGGGCCA 58.960 50.000 18.96 0.00 0.00 5.36
7623 15971 3.181467 CCACTTATCCAGGAGCAAGAGAG 60.181 52.174 17.05 8.55 0.00 3.20
7629 15977 0.461135 CAGGAGCAAGAGAGCCTCTC 59.539 60.000 14.03 14.03 40.28 3.20
7641 15989 0.411452 AGCCTCTCTCTCCAGGTCAA 59.589 55.000 0.00 0.00 31.65 3.18
7642 15990 1.008206 AGCCTCTCTCTCCAGGTCAAT 59.992 52.381 0.00 0.00 31.65 2.57
7645 15993 2.465813 CTCTCTCTCCAGGTCAATGGT 58.534 52.381 0.00 0.00 41.43 3.55
7652 16000 3.135348 TCTCCAGGTCAATGGTGATGATC 59.865 47.826 0.00 0.00 41.43 2.92
7655 16003 3.572632 AGGTCAATGGTGATGATCTGG 57.427 47.619 0.00 0.00 36.90 3.86
7669 16017 3.096852 TGATCTGGTAATCACACGACCT 58.903 45.455 0.00 0.00 34.13 3.85
7674 16022 0.743345 GTAATCACACGACCTGGGCC 60.743 60.000 0.00 0.00 0.00 5.80
7678 16026 3.941188 ACACGACCTGGGCCAGTG 61.941 66.667 30.68 24.36 38.63 3.66
7679 16027 3.941188 CACGACCTGGGCCAGTGT 61.941 66.667 30.68 26.24 0.00 3.55
7680 16028 3.941188 ACGACCTGGGCCAGTGTG 61.941 66.667 30.68 21.02 0.00 3.82
7681 16029 3.625897 CGACCTGGGCCAGTGTGA 61.626 66.667 30.68 0.00 0.00 3.58
7682 16030 2.959484 CGACCTGGGCCAGTGTGAT 61.959 63.158 30.68 11.58 0.00 3.06
7683 16031 1.078143 GACCTGGGCCAGTGTGATC 60.078 63.158 30.68 16.08 0.00 2.92
7684 16032 2.273449 CCTGGGCCAGTGTGATCC 59.727 66.667 30.68 0.00 0.00 3.36
7685 16033 2.304056 CCTGGGCCAGTGTGATCCT 61.304 63.158 30.68 0.00 0.00 3.24
7686 16034 1.077930 CTGGGCCAGTGTGATCCTG 60.078 63.158 25.74 0.00 0.00 3.86
7687 16035 2.439156 GGGCCAGTGTGATCCTGC 60.439 66.667 4.39 0.00 0.00 4.85
7688 16036 2.821366 GGCCAGTGTGATCCTGCG 60.821 66.667 0.00 0.00 0.00 5.18
7689 16037 3.503363 GCCAGTGTGATCCTGCGC 61.503 66.667 0.00 0.00 0.00 6.09
7690 16038 2.821366 CCAGTGTGATCCTGCGCC 60.821 66.667 4.18 0.00 0.00 6.53
7691 16039 3.190849 CAGTGTGATCCTGCGCCG 61.191 66.667 4.18 0.00 0.00 6.46
7695 16043 4.819761 GTGATCCTGCGCCGCTGA 62.820 66.667 17.92 10.88 0.00 4.26
7696 16044 4.819761 TGATCCTGCGCCGCTGAC 62.820 66.667 17.92 8.81 0.00 3.51
7697 16045 4.819761 GATCCTGCGCCGCTGACA 62.820 66.667 17.92 3.83 0.00 3.58
7698 16046 4.393155 ATCCTGCGCCGCTGACAA 62.393 61.111 17.92 3.01 0.00 3.18
7699 16047 3.899981 ATCCTGCGCCGCTGACAAA 62.900 57.895 17.92 0.51 0.00 2.83
7700 16048 4.389576 CCTGCGCCGCTGACAAAC 62.390 66.667 17.92 0.00 0.00 2.93
7701 16049 3.349006 CTGCGCCGCTGACAAACT 61.349 61.111 11.67 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.050934 ATGAGCGGTGCGTGACGA 62.051 61.111 10.10 0.00 0.00 4.20
39 2918 2.442272 TAGGAGAGGTCTGCCCGC 60.442 66.667 0.00 0.00 38.74 6.13
44 2923 4.479158 AGGAATAAGCTAGGAGAGGTCTG 58.521 47.826 0.00 0.00 33.71 3.51
45 2924 4.825199 AGGAATAAGCTAGGAGAGGTCT 57.175 45.455 0.00 0.00 33.71 3.85
47 2926 4.228010 GGAAGGAATAAGCTAGGAGAGGT 58.772 47.826 0.00 0.00 37.55 3.85
48 2927 3.580895 GGGAAGGAATAAGCTAGGAGAGG 59.419 52.174 0.00 0.00 0.00 3.69
50 2929 3.210074 AGGGGAAGGAATAAGCTAGGAGA 59.790 47.826 0.00 0.00 0.00 3.71
51 2930 3.580895 GAGGGGAAGGAATAAGCTAGGAG 59.419 52.174 0.00 0.00 0.00 3.69
52 2931 3.210074 AGAGGGGAAGGAATAAGCTAGGA 59.790 47.826 0.00 0.00 0.00 2.94
63 2942 1.619977 CGAGAGGAAAGAGGGGAAGGA 60.620 57.143 0.00 0.00 0.00 3.36
77 2956 1.179174 TGTGGTGAGTGGACGAGAGG 61.179 60.000 0.00 0.00 0.00 3.69
78 2957 0.039074 GTGTGGTGAGTGGACGAGAG 60.039 60.000 0.00 0.00 0.00 3.20
97 2976 2.357517 GATAGTCGGGGCATGCGG 60.358 66.667 12.44 3.50 0.00 5.69
102 2981 1.380785 ACGAAGGATAGTCGGGGCA 60.381 57.895 0.00 0.00 42.82 5.36
109 2988 3.428589 GCGTAGTTTGGACGAAGGATAGT 60.429 47.826 0.00 0.00 42.98 2.12
117 2996 0.179156 GATCCGCGTAGTTTGGACGA 60.179 55.000 4.92 0.00 42.98 4.20
121 3000 0.725117 GTTGGATCCGCGTAGTTTGG 59.275 55.000 7.39 0.00 0.00 3.28
123 3002 0.738412 CCGTTGGATCCGCGTAGTTT 60.738 55.000 21.71 0.00 0.00 2.66
127 3006 2.120282 TAGCCGTTGGATCCGCGTA 61.120 57.895 21.71 10.01 0.00 4.42
143 3030 0.752658 TGGGATCATGTCGCCTGTAG 59.247 55.000 0.00 0.00 38.93 2.74
146 3033 1.524621 GGTGGGATCATGTCGCCTG 60.525 63.158 0.00 0.00 38.93 4.85
147 3034 2.911143 GGTGGGATCATGTCGCCT 59.089 61.111 0.00 0.00 38.93 5.52
193 3083 3.907474 TCCCTTGATTTCTCTACACCACA 59.093 43.478 0.00 0.00 0.00 4.17
232 3122 3.366052 AGGTTGTTAGCCGATTTGGAT 57.634 42.857 0.00 0.00 42.00 3.41
245 3135 0.037605 CGACCGAGGCTAAGGTTGTT 60.038 55.000 14.32 0.00 41.51 2.83
321 3212 1.730851 GGGAAGGGATAAGGTCGGAT 58.269 55.000 0.00 0.00 0.00 4.18
344 6402 2.092838 GTGTCGAGCGAATGAGGAAAAG 59.907 50.000 0.00 0.00 0.00 2.27
347 6405 0.601057 TGTGTCGAGCGAATGAGGAA 59.399 50.000 0.00 0.00 0.00 3.36
373 6431 4.203076 GTGGTCGATCGTCGGGGG 62.203 72.222 15.94 0.00 40.88 5.40
375 6433 2.102357 CAGTGGTCGATCGTCGGG 59.898 66.667 15.94 0.00 40.88 5.14
385 6443 1.352156 GATTCGCGTGGTCAGTGGTC 61.352 60.000 5.77 0.00 0.00 4.02
386 6444 1.374252 GATTCGCGTGGTCAGTGGT 60.374 57.895 5.77 0.00 0.00 4.16
389 6447 0.949105 GTTGGATTCGCGTGGTCAGT 60.949 55.000 5.77 0.00 0.00 3.41
390 6448 1.787847 GTTGGATTCGCGTGGTCAG 59.212 57.895 5.77 0.00 0.00 3.51
401 6468 2.616330 CGCACACAGCCGTTGGATT 61.616 57.895 0.00 0.00 41.38 3.01
403 6470 4.228567 TCGCACACAGCCGTTGGA 62.229 61.111 0.00 0.00 41.38 3.53
414 6481 2.019408 CGTTGGATCGTGTCGCACA 61.019 57.895 9.95 0.00 33.40 4.57
461 6528 1.431488 CTCCGCGCTACACCGTACTA 61.431 60.000 5.56 0.00 0.00 1.82
467 6534 4.874977 GCTCCTCCGCGCTACACC 62.875 72.222 5.56 0.00 0.00 4.16
468 6535 4.874977 GGCTCCTCCGCGCTACAC 62.875 72.222 5.56 0.00 0.00 2.90
470 6537 4.273257 GAGGCTCCTCCGCGCTAC 62.273 72.222 5.56 0.00 40.77 3.58
483 6550 2.046217 GGACAAAGGGACGGAGGC 60.046 66.667 0.00 0.00 0.00 4.70
485 6552 0.685097 TTCTGGACAAAGGGACGGAG 59.315 55.000 0.00 0.00 0.00 4.63
488 6555 3.364964 CGAAATTTCTGGACAAAGGGACG 60.365 47.826 15.92 0.00 0.00 4.79
512 6579 4.181010 CATGCAGGGGAGGGACGG 62.181 72.222 0.00 0.00 0.00 4.79
513 6580 3.402681 ACATGCAGGGGAGGGACG 61.403 66.667 2.31 0.00 0.00 4.79
514 6581 2.273449 CACATGCAGGGGAGGGAC 59.727 66.667 2.31 0.00 0.00 4.46
515 6582 3.731728 GCACATGCAGGGGAGGGA 61.732 66.667 3.93 0.00 41.59 4.20
522 6589 0.322277 AGTGAGAAGGCACATGCAGG 60.322 55.000 6.15 0.00 44.36 4.85
523 6590 1.085091 GAGTGAGAAGGCACATGCAG 58.915 55.000 6.15 0.00 44.36 4.41
524 6591 0.689055 AGAGTGAGAAGGCACATGCA 59.311 50.000 6.15 0.00 44.36 3.96
525 6592 2.275318 GTAGAGTGAGAAGGCACATGC 58.725 52.381 0.00 0.00 41.19 4.06
530 6597 0.528017 CTGCGTAGAGTGAGAAGGCA 59.472 55.000 0.00 0.00 33.45 4.75
540 6607 2.852449 TGACTCCCTATCTGCGTAGAG 58.148 52.381 9.62 0.00 36.14 2.43
551 6618 3.414759 TGGCCTATCTTTGACTCCCTA 57.585 47.619 3.32 0.00 0.00 3.53
553 6620 3.366052 TTTGGCCTATCTTTGACTCCC 57.634 47.619 3.32 0.00 0.00 4.30
555 6622 6.375455 TGAGATTTTTGGCCTATCTTTGACTC 59.625 38.462 3.32 3.13 0.00 3.36
557 6624 6.151817 AGTGAGATTTTTGGCCTATCTTTGAC 59.848 38.462 3.32 6.01 0.00 3.18
565 6643 6.070251 TGACATAGAGTGAGATTTTTGGCCTA 60.070 38.462 3.32 0.00 0.00 3.93
567 6645 4.943705 TGACATAGAGTGAGATTTTTGGCC 59.056 41.667 0.00 0.00 0.00 5.36
575 6653 3.449018 GTGGTGGTGACATAGAGTGAGAT 59.551 47.826 0.00 0.00 46.14 2.75
576 6654 2.826128 GTGGTGGTGACATAGAGTGAGA 59.174 50.000 0.00 0.00 46.14 3.27
577 6655 2.093973 GGTGGTGGTGACATAGAGTGAG 60.094 54.545 0.00 0.00 46.14 3.51
578 6656 1.899814 GGTGGTGGTGACATAGAGTGA 59.100 52.381 0.00 0.00 46.14 3.41
579 6657 1.623311 TGGTGGTGGTGACATAGAGTG 59.377 52.381 0.00 0.00 46.14 3.51
582 6660 3.196901 GTGTATGGTGGTGGTGACATAGA 59.803 47.826 0.00 0.00 46.14 1.98
583 6661 3.055458 TGTGTATGGTGGTGGTGACATAG 60.055 47.826 0.00 0.00 46.14 2.23
584 6662 2.907042 TGTGTATGGTGGTGGTGACATA 59.093 45.455 0.00 0.00 46.14 2.29
589 6688 0.400213 AGGTGTGTATGGTGGTGGTG 59.600 55.000 0.00 0.00 0.00 4.17
591 6690 1.073125 TGAAGGTGTGTATGGTGGTGG 59.927 52.381 0.00 0.00 0.00 4.61
603 6702 5.697067 TGGGTTTTAGTATTGTGAAGGTGT 58.303 37.500 0.00 0.00 0.00 4.16
604 6703 6.642707 TTGGGTTTTAGTATTGTGAAGGTG 57.357 37.500 0.00 0.00 0.00 4.00
608 6707 9.549078 GGAAATTTTGGGTTTTAGTATTGTGAA 57.451 29.630 0.00 0.00 0.00 3.18
615 6714 9.562408 GGAAAATGGAAATTTTGGGTTTTAGTA 57.438 29.630 1.37 0.00 34.24 1.82
616 6715 7.504238 GGGAAAATGGAAATTTTGGGTTTTAGT 59.496 33.333 1.37 0.00 34.24 2.24
617 6716 7.723616 AGGGAAAATGGAAATTTTGGGTTTTAG 59.276 33.333 1.37 0.00 34.24 1.85
618 6717 7.587258 AGGGAAAATGGAAATTTTGGGTTTTA 58.413 30.769 1.37 0.00 34.24 1.52
619 6718 6.439487 AGGGAAAATGGAAATTTTGGGTTTT 58.561 32.000 1.37 0.00 34.24 2.43
624 6765 5.503634 AGGAGGGAAAATGGAAATTTTGG 57.496 39.130 1.37 0.00 34.24 3.28
629 6770 6.384015 GGATGTTTAGGAGGGAAAATGGAAAT 59.616 38.462 0.00 0.00 0.00 2.17
635 6776 4.965283 TGGGATGTTTAGGAGGGAAAAT 57.035 40.909 0.00 0.00 0.00 1.82
676 6821 2.000447 CGGGAGTCAGAAACGGAAATC 59.000 52.381 0.00 0.00 0.00 2.17
722 6867 2.907042 AGGAAGAGGAAGGTTGTGGTAG 59.093 50.000 0.00 0.00 0.00 3.18
769 6927 2.586792 CGGGAGGGAGGCAAAGAG 59.413 66.667 0.00 0.00 0.00 2.85
770 6928 3.717294 GCGGGAGGGAGGCAAAGA 61.717 66.667 0.00 0.00 0.00 2.52
771 6929 4.033776 TGCGGGAGGGAGGCAAAG 62.034 66.667 0.00 0.00 33.01 2.77
776 6934 3.787001 GAAGGTGCGGGAGGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
777 6935 2.685380 AGAAGGTGCGGGAGGGAG 60.685 66.667 0.00 0.00 0.00 4.30
778 6936 2.683933 GAGAAGGTGCGGGAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
779 6937 3.787001 GGAGAAGGTGCGGGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
786 6944 2.637947 GAGGAAGAATGGAGAAGGTGC 58.362 52.381 0.00 0.00 0.00 5.01
816 6977 2.557901 GGACTGGAGTGGAGGAGTAACT 60.558 54.545 0.00 0.00 0.00 2.24
1100 7272 3.787001 CCCCGAGAAGCCTGGACC 61.787 72.222 0.00 0.00 0.00 4.46
1198 7380 4.035091 TGTGTGAACCAAGAACTCGAATTG 59.965 41.667 0.00 0.00 0.00 2.32
1206 7388 4.992688 TGAACAATGTGTGAACCAAGAAC 58.007 39.130 0.00 0.00 0.00 3.01
1218 7400 3.441572 GGGGAGAATGTCTGAACAATGTG 59.558 47.826 0.00 0.00 39.30 3.21
1226 7408 3.557054 CGAAACAAGGGGAGAATGTCTGA 60.557 47.826 0.00 0.00 0.00 3.27
1227 7409 2.744202 CGAAACAAGGGGAGAATGTCTG 59.256 50.000 0.00 0.00 0.00 3.51
1228 7410 2.876079 GCGAAACAAGGGGAGAATGTCT 60.876 50.000 0.00 0.00 0.00 3.41
1229 7411 1.468914 GCGAAACAAGGGGAGAATGTC 59.531 52.381 0.00 0.00 0.00 3.06
1230 7412 1.534729 GCGAAACAAGGGGAGAATGT 58.465 50.000 0.00 0.00 0.00 2.71
1232 7414 0.323451 GGGCGAAACAAGGGGAGAAT 60.323 55.000 0.00 0.00 0.00 2.40
1233 7415 1.074248 GGGCGAAACAAGGGGAGAA 59.926 57.895 0.00 0.00 0.00 2.87
1234 7416 1.423794 AAGGGCGAAACAAGGGGAGA 61.424 55.000 0.00 0.00 0.00 3.71
1333 7694 0.463474 GGCTGCATCTCAGGTTCTCC 60.463 60.000 0.50 0.00 43.06 3.71
1336 7697 2.467826 GCGGCTGCATCTCAGGTTC 61.468 63.158 14.08 0.00 43.06 3.62
1530 7891 2.551071 GGTTGAGAGAAGTTGAGGTGGG 60.551 54.545 0.00 0.00 0.00 4.61
1534 7904 5.656416 AGATAGAGGTTGAGAGAAGTTGAGG 59.344 44.000 0.00 0.00 0.00 3.86
1546 7916 6.605594 GGAAGAAGAAGAGAGATAGAGGTTGA 59.394 42.308 0.00 0.00 0.00 3.18
1547 7917 6.607198 AGGAAGAAGAAGAGAGATAGAGGTTG 59.393 42.308 0.00 0.00 0.00 3.77
1548 7918 6.741724 AGGAAGAAGAAGAGAGATAGAGGTT 58.258 40.000 0.00 0.00 0.00 3.50
1550 7920 6.605119 AGAGGAAGAAGAAGAGAGATAGAGG 58.395 44.000 0.00 0.00 0.00 3.69
1551 7921 9.799106 ATAAGAGGAAGAAGAAGAGAGATAGAG 57.201 37.037 0.00 0.00 0.00 2.43
1553 7923 9.799106 AGATAAGAGGAAGAAGAAGAGAGATAG 57.201 37.037 0.00 0.00 0.00 2.08
1555 7925 8.917088 CAAGATAAGAGGAAGAAGAAGAGAGAT 58.083 37.037 0.00 0.00 0.00 2.75
1556 7926 7.893302 ACAAGATAAGAGGAAGAAGAAGAGAGA 59.107 37.037 0.00 0.00 0.00 3.10
1557 7927 8.066612 ACAAGATAAGAGGAAGAAGAAGAGAG 57.933 38.462 0.00 0.00 0.00 3.20
1563 7933 7.819900 GCAGTAAACAAGATAAGAGGAAGAAGA 59.180 37.037 0.00 0.00 0.00 2.87
1564 7934 7.604164 TGCAGTAAACAAGATAAGAGGAAGAAG 59.396 37.037 0.00 0.00 0.00 2.85
1567 7937 6.876257 AGTGCAGTAAACAAGATAAGAGGAAG 59.124 38.462 0.00 0.00 0.00 3.46
1569 7939 6.166279 CAGTGCAGTAAACAAGATAAGAGGA 58.834 40.000 0.00 0.00 0.00 3.71
1571 7941 5.409520 TGCAGTGCAGTAAACAAGATAAGAG 59.590 40.000 15.37 0.00 33.32 2.85
1575 7945 6.092122 GTGTATGCAGTGCAGTAAACAAGATA 59.908 38.462 24.20 3.78 43.65 1.98
1582 7952 5.277825 GTTTTGTGTATGCAGTGCAGTAAA 58.722 37.500 24.20 15.35 43.65 2.01
1604 7981 3.222603 GACCCAATCTTGAACTGTTGGT 58.777 45.455 0.00 0.00 39.52 3.67
1605 7982 3.221771 TGACCCAATCTTGAACTGTTGG 58.778 45.455 0.00 0.00 40.56 3.77
1606 7983 5.458041 AATGACCCAATCTTGAACTGTTG 57.542 39.130 0.00 0.00 0.00 3.33
1607 7984 5.598005 TGAAATGACCCAATCTTGAACTGTT 59.402 36.000 0.00 0.00 0.00 3.16
1613 7990 5.573219 AGATGTGAAATGACCCAATCTTGA 58.427 37.500 0.00 0.00 0.00 3.02
1655 8032 0.514255 CACACACGCAATCTCCAGTG 59.486 55.000 0.00 0.00 40.17 3.66
1675 8052 0.967380 GGAACCACTTGCCCTGATGG 60.967 60.000 0.00 0.00 38.26 3.51
1713 8090 6.692486 TGTCCTCAACTAGAATCTTCAAGTC 58.308 40.000 0.00 0.00 0.00 3.01
1816 8358 7.596494 TGATGGCAAAATTAGACAAGAAGAAG 58.404 34.615 0.00 0.00 0.00 2.85
1954 8501 4.899239 GCGAGACGGGCCATGAGG 62.899 72.222 4.39 0.00 38.23 3.86
2014 8561 2.169832 TACTGAAACTGAGGCAGCAC 57.830 50.000 0.00 0.00 34.37 4.40
2016 8563 1.399791 GCATACTGAAACTGAGGCAGC 59.600 52.381 0.00 0.00 34.37 5.25
2017 8564 2.012673 GGCATACTGAAACTGAGGCAG 58.987 52.381 0.00 0.00 37.52 4.85
2018 8565 1.630369 AGGCATACTGAAACTGAGGCA 59.370 47.619 0.00 0.00 0.00 4.75
2019 8566 2.284190 GAGGCATACTGAAACTGAGGC 58.716 52.381 0.00 0.00 0.00 4.70
2024 8571 3.429547 CGCTAGTGAGGCATACTGAAACT 60.430 47.826 0.00 0.00 0.00 2.66
2052 8599 3.058224 GGCTCGCACAAATCTAAAGTTGT 60.058 43.478 0.00 0.00 44.01 3.32
2053 8600 3.492313 GGCTCGCACAAATCTAAAGTTG 58.508 45.455 0.00 0.00 36.55 3.16
2056 8603 2.083774 TGGGCTCGCACAAATCTAAAG 58.916 47.619 0.00 0.00 0.00 1.85
2058 8605 2.418368 ATGGGCTCGCACAAATCTAA 57.582 45.000 0.00 0.00 30.82 2.10
2059 8606 2.418368 AATGGGCTCGCACAAATCTA 57.582 45.000 0.00 0.00 30.82 1.98
2060 8607 2.418368 TAATGGGCTCGCACAAATCT 57.582 45.000 0.00 0.00 30.82 2.40
2061 8608 3.715628 ATTAATGGGCTCGCACAAATC 57.284 42.857 0.00 0.00 30.82 2.17
2062 8609 3.446873 TGAATTAATGGGCTCGCACAAAT 59.553 39.130 0.00 0.00 30.82 2.32
2063 8610 2.822561 TGAATTAATGGGCTCGCACAAA 59.177 40.909 0.00 0.00 30.82 2.83
2064 8611 2.441410 TGAATTAATGGGCTCGCACAA 58.559 42.857 0.00 0.00 30.82 3.33
2065 8612 2.121291 TGAATTAATGGGCTCGCACA 57.879 45.000 0.00 0.00 0.00 4.57
2066 8613 3.502191 TTTGAATTAATGGGCTCGCAC 57.498 42.857 0.00 0.00 0.00 5.34
2067 8614 3.509575 ACTTTTGAATTAATGGGCTCGCA 59.490 39.130 0.00 0.00 0.00 5.10
2069 8616 5.123820 TCAGACTTTTGAATTAATGGGCTCG 59.876 40.000 0.00 0.00 0.00 5.03
2086 8633 9.730705 TCTGAAGATTATGTCAAATTCAGACTT 57.269 29.630 10.49 8.03 44.52 3.01
2089 8636 9.159364 CAGTCTGAAGATTATGTCAAATTCAGA 57.841 33.333 10.49 10.49 46.18 3.27
2092 8639 8.610896 CCTCAGTCTGAAGATTATGTCAAATTC 58.389 37.037 3.67 0.00 0.00 2.17
2094 8641 7.551974 CACCTCAGTCTGAAGATTATGTCAAAT 59.448 37.037 5.43 0.00 0.00 2.32
2096 8643 6.014242 ACACCTCAGTCTGAAGATTATGTCAA 60.014 38.462 5.43 0.00 0.00 3.18
2097 8644 5.481824 ACACCTCAGTCTGAAGATTATGTCA 59.518 40.000 5.43 0.00 0.00 3.58
2099 8646 5.105146 GGACACCTCAGTCTGAAGATTATGT 60.105 44.000 5.43 0.00 38.57 2.29
2101 8648 4.407296 GGGACACCTCAGTCTGAAGATTAT 59.593 45.833 5.43 0.00 38.57 1.28
2102 8649 3.769844 GGGACACCTCAGTCTGAAGATTA 59.230 47.826 5.43 0.00 38.57 1.75
2103 8650 2.569404 GGGACACCTCAGTCTGAAGATT 59.431 50.000 5.43 0.00 38.57 2.40
2104 8651 2.183679 GGGACACCTCAGTCTGAAGAT 58.816 52.381 5.43 0.00 38.57 2.40
2105 8652 1.133167 TGGGACACCTCAGTCTGAAGA 60.133 52.381 5.43 0.00 38.57 2.87
2106 8653 1.274728 CTGGGACACCTCAGTCTGAAG 59.725 57.143 3.67 0.00 38.57 3.02
2107 8654 1.342074 CTGGGACACCTCAGTCTGAA 58.658 55.000 3.67 0.00 38.57 3.02
2108 8655 1.188219 GCTGGGACACCTCAGTCTGA 61.188 60.000 1.78 1.78 38.57 3.27
2109 8656 1.294780 GCTGGGACACCTCAGTCTG 59.705 63.158 0.00 0.00 38.57 3.51
2110 8657 1.152247 TGCTGGGACACCTCAGTCT 60.152 57.895 0.00 0.00 38.57 3.24
2111 8658 1.188219 TCTGCTGGGACACCTCAGTC 61.188 60.000 0.00 0.00 38.40 3.51
2112 8659 1.152247 TCTGCTGGGACACCTCAGT 60.152 57.895 0.00 0.00 38.40 3.41
2113 8660 1.595882 CTCTGCTGGGACACCTCAG 59.404 63.158 0.00 0.00 38.52 3.35
2136 8687 6.132056 CGACAGAAAAATTCAGACTTGTGAG 58.868 40.000 0.00 0.00 0.00 3.51
2336 8888 3.341823 AGCCTCAAAAGCAGTGATAGTG 58.658 45.455 0.00 0.00 0.00 2.74
2337 8889 3.710209 AGCCTCAAAAGCAGTGATAGT 57.290 42.857 0.00 0.00 0.00 2.12
2340 8892 3.080319 GAGAAGCCTCAAAAGCAGTGAT 58.920 45.455 0.00 0.00 39.24 3.06
2342 8894 1.538950 GGAGAAGCCTCAAAAGCAGTG 59.461 52.381 0.00 0.00 41.20 3.66
2344 8896 2.197283 AGGAGAAGCCTCAAAAGCAG 57.803 50.000 0.00 0.00 46.97 4.24
2382 8934 1.433534 GGCAGACTACAGCACAAGAC 58.566 55.000 0.00 0.00 0.00 3.01
2581 9138 0.957888 GTGAAGGTGAGGGCTTGAGC 60.958 60.000 0.00 0.00 41.14 4.26
2607 9164 7.230027 AGTCCAATCAAGAAAACAGAGAGATT 58.770 34.615 0.00 0.00 0.00 2.40
2610 9167 7.009999 CGATAGTCCAATCAAGAAAACAGAGAG 59.990 40.741 0.00 0.00 0.00 3.20
2668 9225 3.050275 GTCAGAACCTGCACCGGC 61.050 66.667 0.00 0.00 41.68 6.13
2713 9324 3.427909 CGATGAACATTCCCACACCAATG 60.428 47.826 0.00 0.00 36.28 2.82
2930 9559 4.793216 CGTGGTTCAGTTAATTAATGCAGC 59.207 41.667 0.31 2.77 0.00 5.25
3219 9889 0.511653 GGTTTTCTGTTCGAGACGCC 59.488 55.000 0.00 0.00 0.00 5.68
3264 9934 1.188219 TCGGATCAGCTAGCATCCCC 61.188 60.000 22.22 14.59 35.97 4.81
3308 9978 1.426251 AACCCTCTGCCACCACATCA 61.426 55.000 0.00 0.00 0.00 3.07
3313 9983 1.151899 AGGTAACCCTCTGCCACCA 60.152 57.895 0.00 0.00 35.62 4.17
3323 9993 6.665992 TCATCATATACACAGAGGTAACCC 57.334 41.667 0.00 0.00 37.17 4.11
3325 9995 9.764363 TCATTTCATCATATACACAGAGGTAAC 57.236 33.333 0.00 0.00 0.00 2.50
3333 10005 7.225341 GCAGACAGTCATTTCATCATATACACA 59.775 37.037 2.66 0.00 0.00 3.72
3334 10006 7.307632 GGCAGACAGTCATTTCATCATATACAC 60.308 40.741 2.66 0.00 0.00 2.90
3336 10008 6.148480 GGGCAGACAGTCATTTCATCATATAC 59.852 42.308 2.66 0.00 0.00 1.47
3492 10164 2.789409 ATTCTTGTGGTACCTGCTCC 57.211 50.000 14.36 0.00 0.00 4.70
3525 10197 4.706842 AAGGTAACGCTGGGATATCAAT 57.293 40.909 4.83 0.00 46.39 2.57
3575 10247 3.777478 CAGTCATTCATTGGGTTCATGC 58.223 45.455 0.00 0.00 0.00 4.06
3576 10248 3.193903 TGCAGTCATTCATTGGGTTCATG 59.806 43.478 0.00 0.00 0.00 3.07
3749 10422 5.773575 TCACTGACTGAACTCTGTTGATAC 58.226 41.667 0.00 0.00 0.00 2.24
3757 10430 3.838565 TCCTTCTCACTGACTGAACTCT 58.161 45.455 0.00 0.00 0.00 3.24
3759 10432 5.070981 TGAAATCCTTCTCACTGACTGAACT 59.929 40.000 0.00 0.00 32.33 3.01
3761 10434 5.551305 TGAAATCCTTCTCACTGACTGAA 57.449 39.130 0.00 0.00 32.33 3.02
3762 10435 5.246883 TCATGAAATCCTTCTCACTGACTGA 59.753 40.000 0.00 0.00 32.33 3.41
3764 10437 5.752036 TCATGAAATCCTTCTCACTGACT 57.248 39.130 0.00 0.00 32.33 3.41
3765 10438 6.808008 TTTCATGAAATCCTTCTCACTGAC 57.192 37.500 16.91 0.00 32.33 3.51
3766 10439 7.000472 AGTTTTCATGAAATCCTTCTCACTGA 59.000 34.615 21.10 0.00 32.33 3.41
3767 10440 7.211966 AGTTTTCATGAAATCCTTCTCACTG 57.788 36.000 21.10 0.00 32.33 3.66
3768 10441 7.830099 AAGTTTTCATGAAATCCTTCTCACT 57.170 32.000 21.10 15.16 32.33 3.41
3831 10504 2.416027 GCTTAAGCTTAAGTTGGGCAGC 60.416 50.000 35.14 22.08 41.63 5.25
3832 10505 3.494045 GCTTAAGCTTAAGTTGGGCAG 57.506 47.619 35.14 17.41 41.63 4.85
3861 10534 5.584649 CAGATACGGAAGCCAGATTGTTTAA 59.415 40.000 0.00 0.00 0.00 1.52
3940 10613 9.466497 AGATGACACATACCAAAAACAGATATT 57.534 29.630 0.00 0.00 0.00 1.28
3941 10614 9.466497 AAGATGACACATACCAAAAACAGATAT 57.534 29.630 0.00 0.00 0.00 1.63
3962 10638 6.682746 ACAGGATAATACACTCGCTAAGATG 58.317 40.000 0.00 0.00 0.00 2.90
3963 10639 6.071840 GGACAGGATAATACACTCGCTAAGAT 60.072 42.308 0.00 0.00 0.00 2.40
3969 10645 4.323553 AAGGACAGGATAATACACTCGC 57.676 45.455 0.00 0.00 0.00 5.03
3972 10648 7.200434 ACATGAAAGGACAGGATAATACACT 57.800 36.000 0.00 0.00 0.00 3.55
3973 10649 7.657761 CCTACATGAAAGGACAGGATAATACAC 59.342 40.741 11.95 0.00 36.08 2.90
3974 10650 7.567250 TCCTACATGAAAGGACAGGATAATACA 59.433 37.037 14.94 0.00 38.24 2.29
3975 10651 7.963532 TCCTACATGAAAGGACAGGATAATAC 58.036 38.462 14.94 0.00 38.24 1.89
3976 10652 8.561536 TTCCTACATGAAAGGACAGGATAATA 57.438 34.615 17.58 1.97 42.89 0.98
3977 10653 7.127955 ACTTCCTACATGAAAGGACAGGATAAT 59.872 37.037 17.58 4.43 42.89 1.28
3978 10654 6.443849 ACTTCCTACATGAAAGGACAGGATAA 59.556 38.462 17.58 4.71 42.89 1.75
3991 10667 3.967326 CCCATCTGGTACTTCCTACATGA 59.033 47.826 0.00 0.00 37.07 3.07
4142 10818 8.263940 TCTGAAAAGGAATGAAACTATTACCG 57.736 34.615 0.00 0.00 0.00 4.02
4186 10862 5.334414 GGAATGCATCAGACATAATCGGAAC 60.334 44.000 0.00 0.00 34.99 3.62
4188 10864 4.040829 AGGAATGCATCAGACATAATCGGA 59.959 41.667 0.00 0.00 35.87 4.55
4189 10865 4.321718 AGGAATGCATCAGACATAATCGG 58.678 43.478 0.00 0.00 0.00 4.18
4190 10866 7.606858 AATAGGAATGCATCAGACATAATCG 57.393 36.000 0.00 0.00 0.00 3.34
4203 10914 5.527214 CCACATCGAAGTTAATAGGAATGCA 59.473 40.000 0.00 0.00 0.00 3.96
4212 10923 5.705609 AAACAAGCCACATCGAAGTTAAT 57.294 34.783 0.00 0.00 0.00 1.40
4217 10928 7.593273 TGTAAAATAAAACAAGCCACATCGAAG 59.407 33.333 0.00 0.00 0.00 3.79
4221 10932 9.810231 CATTTGTAAAATAAAACAAGCCACATC 57.190 29.630 0.00 0.00 36.96 3.06
4241 11088 3.755378 GAGCTGATCACCTGAACATTTGT 59.245 43.478 0.00 0.00 0.00 2.83
4465 11376 5.638596 AATATTTGTTCGTTCTCCCAACC 57.361 39.130 0.00 0.00 0.00 3.77
4494 11407 6.867550 AGAAGACAATCACTCGATCAATGTA 58.132 36.000 0.00 0.00 0.00 2.29
4513 11426 2.603021 ACTTGTGCTCTGGAGAGAAGA 58.397 47.619 7.89 0.00 44.74 2.87
4514 11427 4.159321 TCATACTTGTGCTCTGGAGAGAAG 59.841 45.833 7.89 5.18 44.74 2.85
4517 11430 3.698539 TCTCATACTTGTGCTCTGGAGAG 59.301 47.826 1.35 0.00 44.75 3.20
4577 11490 3.536956 TTTACTCCATCACCCGTCATC 57.463 47.619 0.00 0.00 0.00 2.92
4773 11686 7.445945 AGTAGGAAATAATACTCAGGCACATC 58.554 38.462 0.00 0.00 0.00 3.06
4911 11871 5.339008 AACATGTATCGCTCTGGAAGTAA 57.661 39.130 0.00 0.00 33.76 2.24
4924 11884 9.935682 ACAAATAATGTGATCGAAACATGTATC 57.064 29.630 15.49 0.00 41.93 2.24
4950 11910 8.478877 ACTTGACACCATTTAAAACCAACATTA 58.521 29.630 0.00 0.00 0.00 1.90
4955 11915 5.582665 GCAACTTGACACCATTTAAAACCAA 59.417 36.000 0.00 0.00 0.00 3.67
5251 12212 9.803315 GTACCATCATTTAGAATCGCTATGATA 57.197 33.333 0.00 0.00 35.84 2.15
5338 12323 6.369065 CACGACAAATAGTTAAAGAAGCCTCT 59.631 38.462 0.00 0.00 0.00 3.69
5339 12324 6.367969 TCACGACAAATAGTTAAAGAAGCCTC 59.632 38.462 0.00 0.00 0.00 4.70
5340 12325 6.228258 TCACGACAAATAGTTAAAGAAGCCT 58.772 36.000 0.00 0.00 0.00 4.58
5341 12326 6.476243 TCACGACAAATAGTTAAAGAAGCC 57.524 37.500 0.00 0.00 0.00 4.35
5342 12327 7.573627 AGTTCACGACAAATAGTTAAAGAAGC 58.426 34.615 0.00 0.00 0.00 3.86
5589 12577 0.451783 GACACCGCAATTGCCCTAAG 59.548 55.000 24.24 9.89 37.91 2.18
5591 12584 1.377987 GGACACCGCAATTGCCCTA 60.378 57.895 24.24 0.00 37.91 3.53
5687 12749 0.172352 CGTCCTGAGCTGTCTTCTCC 59.828 60.000 0.00 0.00 0.00 3.71
5780 12842 0.806868 CAAATGACCAGCTGCGTGAT 59.193 50.000 8.66 4.81 0.00 3.06
5852 12914 0.537653 GGACAGGGAGTTAGGAGCAC 59.462 60.000 0.00 0.00 0.00 4.40
6168 13277 5.737860 AGATGAACATTAGTGAGTCATGCA 58.262 37.500 11.74 0.00 35.37 3.96
6169 13278 6.674694 AAGATGAACATTAGTGAGTCATGC 57.325 37.500 11.74 6.20 35.37 4.06
6170 13279 8.388853 CAGAAAGATGAACATTAGTGAGTCATG 58.611 37.037 11.74 0.00 35.37 3.07
6401 13522 4.021104 GGAAATTATATGCAAGGAAGGGCC 60.021 45.833 0.00 0.00 0.00 5.80
6441 13599 2.203938 AAAGGAGGGACAGCCGGA 60.204 61.111 5.05 0.00 33.83 5.14
6442 13600 2.269241 GAAAGGAGGGACAGCCGG 59.731 66.667 0.00 0.00 33.83 6.13
6444 13602 2.436824 GCGAAAGGAGGGACAGCC 60.437 66.667 0.00 0.00 0.00 4.85
6445 13603 2.436824 GGCGAAAGGAGGGACAGC 60.437 66.667 0.00 0.00 0.00 4.40
6447 13605 3.327404 GGGGCGAAAGGAGGGACA 61.327 66.667 0.00 0.00 0.00 4.02
6448 13606 3.009714 AGGGGCGAAAGGAGGGAC 61.010 66.667 0.00 0.00 0.00 4.46
6450 13608 1.926426 AATGAGGGGCGAAAGGAGGG 61.926 60.000 0.00 0.00 0.00 4.30
6453 13611 1.378514 GCAATGAGGGGCGAAAGGA 60.379 57.895 0.00 0.00 0.00 3.36
6454 13612 2.418083 GGCAATGAGGGGCGAAAGG 61.418 63.158 0.00 0.00 0.00 3.11
6455 13613 1.379044 AGGCAATGAGGGGCGAAAG 60.379 57.895 0.00 0.00 35.71 2.62
6456 13614 1.378514 GAGGCAATGAGGGGCGAAA 60.379 57.895 0.00 0.00 35.71 3.46
6457 13615 1.925285 ATGAGGCAATGAGGGGCGAA 61.925 55.000 0.00 0.00 35.71 4.70
6458 13616 2.377810 ATGAGGCAATGAGGGGCGA 61.378 57.895 0.00 0.00 35.71 5.54
6459 13617 2.191513 CATGAGGCAATGAGGGGCG 61.192 63.158 0.00 0.00 35.71 6.13
6460 13618 0.396139 TTCATGAGGCAATGAGGGGC 60.396 55.000 0.00 0.00 37.83 5.80
6461 13619 2.376695 ATTCATGAGGCAATGAGGGG 57.623 50.000 0.00 0.00 37.83 4.79
6462 13620 3.293337 TGAATTCATGAGGCAATGAGGG 58.707 45.455 3.38 0.00 37.83 4.30
6463 13621 4.827835 AGATGAATTCATGAGGCAATGAGG 59.172 41.667 25.37 0.00 37.83 3.86
6464 13622 5.765677 AGAGATGAATTCATGAGGCAATGAG 59.234 40.000 25.37 0.00 37.83 2.90
6465 13623 5.531287 CAGAGATGAATTCATGAGGCAATGA 59.469 40.000 25.37 0.00 36.57 2.57
6466 13624 5.278512 CCAGAGATGAATTCATGAGGCAATG 60.279 44.000 25.37 12.71 36.57 2.82
6467 13625 4.827835 CCAGAGATGAATTCATGAGGCAAT 59.172 41.667 25.37 0.00 36.57 3.56
6468 13626 4.204799 CCAGAGATGAATTCATGAGGCAA 58.795 43.478 25.37 0.00 36.57 4.52
6469 13627 3.434596 CCCAGAGATGAATTCATGAGGCA 60.435 47.826 25.37 0.00 36.57 4.75
6470 13628 3.147629 CCCAGAGATGAATTCATGAGGC 58.852 50.000 25.37 10.86 36.57 4.70
6471 13629 3.147629 GCCCAGAGATGAATTCATGAGG 58.852 50.000 25.37 18.42 36.57 3.86
6491 13649 3.257469 TCAGAGAAGACACATGGATGC 57.743 47.619 0.00 0.00 0.00 3.91
6571 13735 3.302555 TGACAGCGTAGTTAGTTTCACG 58.697 45.455 0.00 0.00 37.45 4.35
6742 13907 6.292923 TCATGACGGTAACCCATAAATTAGG 58.707 40.000 0.00 0.00 0.00 2.69
6743 13908 6.990349 ACTCATGACGGTAACCCATAAATTAG 59.010 38.462 0.00 0.00 0.00 1.73
6744 13909 6.764085 CACTCATGACGGTAACCCATAAATTA 59.236 38.462 0.00 0.00 0.00 1.40
6745 13910 5.588648 CACTCATGACGGTAACCCATAAATT 59.411 40.000 0.00 0.00 0.00 1.82
6746 13911 5.104693 TCACTCATGACGGTAACCCATAAAT 60.105 40.000 0.00 0.00 0.00 1.40
6747 13912 4.223255 TCACTCATGACGGTAACCCATAAA 59.777 41.667 0.00 0.00 0.00 1.40
6748 13913 3.770388 TCACTCATGACGGTAACCCATAA 59.230 43.478 0.00 0.00 0.00 1.90
6749 13914 3.367321 TCACTCATGACGGTAACCCATA 58.633 45.455 0.00 0.00 0.00 2.74
6750 13915 2.184533 TCACTCATGACGGTAACCCAT 58.815 47.619 0.00 0.00 0.00 4.00
6751 13916 1.634960 TCACTCATGACGGTAACCCA 58.365 50.000 0.00 0.00 0.00 4.51
6752 13917 2.232941 TCTTCACTCATGACGGTAACCC 59.767 50.000 0.00 0.00 33.38 4.11
6753 13918 3.056749 ACTCTTCACTCATGACGGTAACC 60.057 47.826 0.00 0.00 33.38 2.85
6754 13919 3.921021 CACTCTTCACTCATGACGGTAAC 59.079 47.826 0.00 0.00 33.38 2.50
6755 13920 3.056821 CCACTCTTCACTCATGACGGTAA 60.057 47.826 0.00 0.00 33.38 2.85
6756 13921 2.492088 CCACTCTTCACTCATGACGGTA 59.508 50.000 0.00 0.00 33.38 4.02
6757 13922 1.273606 CCACTCTTCACTCATGACGGT 59.726 52.381 0.00 0.00 33.38 4.83
6758 13923 1.546029 TCCACTCTTCACTCATGACGG 59.454 52.381 0.00 0.00 33.38 4.79
6759 13924 3.443037 GATCCACTCTTCACTCATGACG 58.557 50.000 0.00 0.00 33.38 4.35
6760 13925 3.450457 AGGATCCACTCTTCACTCATGAC 59.550 47.826 15.82 0.00 33.38 3.06
6761 13926 3.703556 GAGGATCCACTCTTCACTCATGA 59.296 47.826 15.82 0.00 34.65 3.07
6795 14003 5.004156 GCGGACGATTACAGTAGTAAAGTTG 59.996 44.000 0.00 0.00 43.01 3.16
6828 14036 3.492383 ACTACGGTAGATATGTGTCGTCG 59.508 47.826 21.39 3.72 32.94 5.12
6829 14037 5.415415 AACTACGGTAGATATGTGTCGTC 57.585 43.478 21.39 0.00 32.94 4.20
6830 14038 5.824904 AAACTACGGTAGATATGTGTCGT 57.175 39.130 21.39 7.29 35.07 4.34
6834 14042 7.306632 GCAAGCTTAAACTACGGTAGATATGTG 60.307 40.741 21.39 9.41 0.00 3.21
6845 14053 1.435577 ACCGGCAAGCTTAAACTACG 58.564 50.000 0.00 0.00 0.00 3.51
6907 14115 9.114952 ACGAAGAAGAAGAAGAAGAAGAAAAAT 57.885 29.630 0.00 0.00 0.00 1.82
6969 14177 6.959671 AACGAGCTTAAAATGAAGAGAGAG 57.040 37.500 0.00 0.00 0.00 3.20
7023 14284 2.727544 CGTGCCCCCACAAACAAG 59.272 61.111 0.00 0.00 42.17 3.16
7024 14285 2.280404 TACCGTGCCCCCACAAACAA 62.280 55.000 0.00 0.00 42.17 2.83
7039 14300 1.472728 GGTCACATGCTAACCCTACCG 60.473 57.143 0.00 0.00 0.00 4.02
7115 14398 1.896220 TTGAGCCAAACCACAGCTAG 58.104 50.000 0.00 0.00 36.87 3.42
7156 14444 0.319813 TGCATCTGTCACCGACACAG 60.320 55.000 0.00 2.84 42.40 3.66
7174 14464 3.058432 CCATGAAGCACTTTGACTGACTG 60.058 47.826 0.00 0.00 0.00 3.51
7175 14465 3.144506 CCATGAAGCACTTTGACTGACT 58.855 45.455 0.00 0.00 0.00 3.41
7176 14466 2.227388 CCCATGAAGCACTTTGACTGAC 59.773 50.000 0.00 0.00 0.00 3.51
7177 14467 2.507484 CCCATGAAGCACTTTGACTGA 58.493 47.619 0.00 0.00 0.00 3.41
7241 15579 1.565759 TCCTGCATCAATGGCCTTACT 59.434 47.619 3.32 0.00 0.00 2.24
7329 15667 4.883585 TCATATGTCCATGGCTCTGTTTTC 59.116 41.667 6.96 0.00 0.00 2.29
7333 15671 6.384342 AATATCATATGTCCATGGCTCTGT 57.616 37.500 6.96 0.00 0.00 3.41
7365 15703 5.289193 CACACACAAGAAACTTGTCAATTGG 59.711 40.000 13.16 5.35 0.00 3.16
7371 15709 2.752903 ACCCACACACAAGAAACTTGTC 59.247 45.455 13.16 0.00 0.00 3.18
7390 15728 3.450115 CCTCTGTCGGACCGGACC 61.450 72.222 15.25 11.81 36.07 4.46
7393 15731 1.248785 TTTCTCCTCTGTCGGACCGG 61.249 60.000 15.25 0.00 0.00 5.28
7397 15735 1.699730 TGTGTTTCTCCTCTGTCGGA 58.300 50.000 0.00 0.00 0.00 4.55
7398 15736 2.035961 TCTTGTGTTTCTCCTCTGTCGG 59.964 50.000 0.00 0.00 0.00 4.79
7399 15737 3.004839 TCTCTTGTGTTTCTCCTCTGTCG 59.995 47.826 0.00 0.00 0.00 4.35
7400 15738 4.592485 TCTCTTGTGTTTCTCCTCTGTC 57.408 45.455 0.00 0.00 0.00 3.51
7401 15739 4.346418 ACATCTCTTGTGTTTCTCCTCTGT 59.654 41.667 0.00 0.00 37.11 3.41
7410 15748 1.532868 GCAGCGACATCTCTTGTGTTT 59.467 47.619 0.00 0.00 39.18 2.83
7431 15769 3.948086 GACGAGGACGACGCACTGG 62.948 68.421 0.00 0.00 42.66 4.00
7442 15780 0.464036 AGCCATTTATGCGACGAGGA 59.536 50.000 0.00 0.00 0.00 3.71
7443 15781 0.861837 GAGCCATTTATGCGACGAGG 59.138 55.000 0.00 0.00 0.00 4.63
7444 15782 1.524355 CTGAGCCATTTATGCGACGAG 59.476 52.381 0.00 0.00 0.00 4.18
7445 15783 1.570813 CTGAGCCATTTATGCGACGA 58.429 50.000 0.00 0.00 0.00 4.20
7504 15842 2.297701 GCACTTGGACTTTGACTTGGA 58.702 47.619 0.00 0.00 0.00 3.53
7512 15850 4.583073 AGTTATTTTCCGCACTTGGACTTT 59.417 37.500 0.00 0.00 37.89 2.66
7517 15855 3.081804 AGGAGTTATTTTCCGCACTTGG 58.918 45.455 0.00 0.00 39.77 3.61
7518 15856 4.475944 CAAGGAGTTATTTTCCGCACTTG 58.524 43.478 0.00 0.00 39.77 3.16
7519 15857 3.506067 CCAAGGAGTTATTTTCCGCACTT 59.494 43.478 0.00 0.00 39.77 3.16
7520 15858 3.081804 CCAAGGAGTTATTTTCCGCACT 58.918 45.455 0.00 0.00 39.77 4.40
7521 15859 2.415491 GCCAAGGAGTTATTTTCCGCAC 60.415 50.000 0.00 0.00 39.77 5.34
7522 15860 1.816224 GCCAAGGAGTTATTTTCCGCA 59.184 47.619 0.00 0.00 39.77 5.69
7526 15864 3.092301 AGGCTGCCAAGGAGTTATTTTC 58.908 45.455 22.65 0.00 0.00 2.29
7540 15878 0.610232 AAAGATGGTCACAGGCTGCC 60.610 55.000 15.89 11.65 0.00 4.85
7550 15888 1.065418 ACCGGGACATCAAAGATGGTC 60.065 52.381 6.32 6.52 0.00 4.02
7569 15917 1.152989 TTGTCGTACGGCACCAACAC 61.153 55.000 24.21 7.31 0.00 3.32
7575 15923 0.584876 AAGCTTTTGTCGTACGGCAC 59.415 50.000 24.21 11.27 0.00 5.01
7578 15926 2.096417 CCAAGAAGCTTTTGTCGTACGG 60.096 50.000 16.52 0.00 0.00 4.02
7579 15927 2.096417 CCCAAGAAGCTTTTGTCGTACG 60.096 50.000 9.53 9.53 0.00 3.67
7583 15931 0.039165 GGCCCAAGAAGCTTTTGTCG 60.039 55.000 0.00 1.77 0.00 4.35
7603 15951 2.433970 GCTCTCTTGCTCCTGGATAAGT 59.566 50.000 15.99 0.00 0.00 2.24
7623 15971 1.138661 CATTGACCTGGAGAGAGAGGC 59.861 57.143 0.00 0.00 31.90 4.70
7629 15977 2.502947 TCATCACCATTGACCTGGAGAG 59.497 50.000 0.00 0.00 38.93 3.20
7631 15979 3.136077 AGATCATCACCATTGACCTGGAG 59.864 47.826 0.00 0.00 39.73 3.86
7641 15989 5.371526 GTGTGATTACCAGATCATCACCAT 58.628 41.667 16.34 0.00 44.22 3.55
7642 15990 4.680440 CGTGTGATTACCAGATCATCACCA 60.680 45.833 16.34 6.13 44.22 4.17
7645 15993 4.441495 GGTCGTGTGATTACCAGATCATCA 60.441 45.833 0.00 0.00 38.25 3.07
7652 16000 1.405526 CCCAGGTCGTGTGATTACCAG 60.406 57.143 0.00 0.00 35.64 4.00
7655 16003 0.743345 GGCCCAGGTCGTGTGATTAC 60.743 60.000 0.00 0.00 0.00 1.89
7665 16013 1.078143 GATCACACTGGCCCAGGTC 60.078 63.158 16.70 1.38 35.51 3.85
7669 16017 3.080641 CAGGATCACACTGGCCCA 58.919 61.111 0.00 0.00 32.38 5.36
7674 16022 3.190849 CGGCGCAGGATCACACTG 61.191 66.667 10.83 0.00 38.95 3.66
7678 16026 4.819761 TCAGCGGCGCAGGATCAC 62.820 66.667 35.02 0.96 0.00 3.06
7679 16027 4.819761 GTCAGCGGCGCAGGATCA 62.820 66.667 35.02 7.02 0.00 2.92
7680 16028 4.819761 TGTCAGCGGCGCAGGATC 62.820 66.667 35.02 22.01 0.00 3.36
7681 16029 3.899981 TTTGTCAGCGGCGCAGGAT 62.900 57.895 35.02 10.65 0.00 3.24
7682 16030 4.617520 TTTGTCAGCGGCGCAGGA 62.618 61.111 35.02 26.81 0.00 3.86
7683 16031 4.389576 GTTTGTCAGCGGCGCAGG 62.390 66.667 35.02 24.89 0.00 4.85
7684 16032 3.349006 AGTTTGTCAGCGGCGCAG 61.349 61.111 35.02 27.13 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.