Multiple sequence alignment - TraesCS5D01G012700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G012700 chr5D 100.000 2928 0 0 1 2928 6934129 6931202 0.000000e+00 5408.0
1 TraesCS5D01G012700 chr5D 80.000 695 104 18 1079 1767 72400797 72401462 5.680000e-132 481.0
2 TraesCS5D01G012700 chr5D 78.824 680 124 15 1090 1765 72362144 72362807 9.630000e-120 440.0
3 TraesCS5D01G012700 chr5D 79.895 572 97 12 1200 1765 72492076 72492635 1.260000e-108 403.0
4 TraesCS5D01G012700 chr5D 97.015 67 2 0 1 67 495161413 495161479 2.380000e-21 113.0
5 TraesCS5D01G012700 chr5D 94.444 54 3 0 2031 2084 501357649 501357596 1.870000e-12 84.2
6 TraesCS5D01G012700 chr5A 89.631 704 63 5 1065 1768 2934521 2935214 0.000000e+00 887.0
7 TraesCS5D01G012700 chr5A 94.521 511 23 3 59 568 2928399 2928905 0.000000e+00 784.0
8 TraesCS5D01G012700 chr5A 86.275 663 87 3 2266 2928 4028688 4029346 0.000000e+00 717.0
9 TraesCS5D01G012700 chr5A 84.615 546 78 5 1229 1768 2929238 2929783 3.320000e-149 538.0
10 TraesCS5D01G012700 chr5A 84.615 546 78 5 1229 1768 3032954 3033499 3.320000e-149 538.0
11 TraesCS5D01G012700 chr5A 80.776 567 90 13 1207 1765 64943101 64943656 2.700000e-115 425.0
12 TraesCS5D01G012700 chr5A 85.957 235 23 8 818 1044 2928904 2929136 2.920000e-60 243.0
13 TraesCS5D01G012700 chr5A 93.077 130 7 2 1065 1194 2929121 2929248 3.850000e-44 189.0
14 TraesCS5D01G012700 chr5A 85.204 196 9 6 869 1044 2934341 2934536 1.790000e-42 183.0
15 TraesCS5D01G012700 chr5A 91.538 130 9 2 1065 1194 3032837 3032964 8.340000e-41 178.0
16 TraesCS5D01G012700 chr5A 83.060 183 22 7 869 1044 3032672 3032852 1.090000e-34 158.0
17 TraesCS5D01G012700 chr5A 94.382 89 5 0 59 147 3026940 3027028 1.420000e-28 137.0
18 TraesCS5D01G012700 chr5A 97.826 46 1 0 722 767 2934224 2934269 2.420000e-11 80.5
19 TraesCS5D01G012700 chrUn 84.787 894 85 21 2084 2928 2235846 2234955 0.000000e+00 850.0
20 TraesCS5D01G012700 chrUn 81.752 137 18 5 2084 2220 235791512 235791383 1.110000e-19 108.0
21 TraesCS5D01G012700 chr1B 84.760 853 109 9 2089 2928 654036402 654035558 0.000000e+00 835.0
22 TraesCS5D01G012700 chr1B 83.501 697 110 5 2233 2928 682312444 682311752 0.000000e+00 645.0
23 TraesCS5D01G012700 chr1B 77.749 391 68 13 2180 2562 495972206 495971827 3.800000e-54 222.0
24 TraesCS5D01G012700 chr2D 83.463 901 91 25 2084 2928 537508573 537509471 0.000000e+00 785.0
25 TraesCS5D01G012700 chr2D 81.740 701 120 6 2234 2928 82885465 82884767 1.960000e-161 579.0
26 TraesCS5D01G012700 chr2D 80.753 717 106 12 2233 2926 340272693 340273400 5.560000e-147 531.0
27 TraesCS5D01G012700 chr2D 94.444 54 3 0 2031 2084 408481748 408481801 1.870000e-12 84.2
28 TraesCS5D01G012700 chr2D 94.444 54 3 0 2031 2084 408527006 408527059 1.870000e-12 84.2
29 TraesCS5D01G012700 chr3D 82.353 697 114 5 2233 2928 241394916 241394228 5.400000e-167 597.0
30 TraesCS5D01G012700 chr3D 74.454 779 155 30 2089 2833 253068897 253068129 2.210000e-76 296.0
31 TraesCS5D01G012700 chr3D 100.000 62 0 0 1 62 142089821 142089760 6.630000e-22 115.0
32 TraesCS5D01G012700 chr3D 98.413 63 1 0 1 63 332232900 332232962 8.580000e-21 111.0
33 TraesCS5D01G012700 chr5B 83.713 614 97 1 1066 1676 904299 903686 7.040000e-161 577.0
34 TraesCS5D01G012700 chr5B 81.609 609 89 16 1167 1765 81625530 81624935 1.580000e-132 483.0
35 TraesCS5D01G012700 chr5B 81.445 609 90 16 1167 1765 82045918 82045323 7.340000e-131 477.0
36 TraesCS5D01G012700 chr5B 79.520 708 108 21 1065 1767 81782519 81781844 1.230000e-128 470.0
37 TraesCS5D01G012700 chr5B 80.333 600 107 6 1167 1765 82171368 82170779 7.450000e-121 444.0
38 TraesCS5D01G012700 chr5B 77.509 538 93 20 1241 1765 81571448 81570926 6.130000e-77 298.0
39 TraesCS5D01G012700 chr5B 86.029 136 13 5 809 941 909697 909565 1.090000e-29 141.0
40 TraesCS5D01G012700 chr5B 98.462 65 1 0 530 594 1406249 1406185 6.630000e-22 115.0
41 TraesCS5D01G012700 chr5B 96.154 52 2 0 1167 1218 81601721 81601670 5.200000e-13 86.1
42 TraesCS5D01G012700 chr6B 88.671 459 48 3 2231 2688 183722472 183722927 9.170000e-155 556.0
43 TraesCS5D01G012700 chr6B 76.764 822 165 21 2125 2924 624835549 624834732 1.250000e-118 436.0
44 TraesCS5D01G012700 chr6B 76.521 822 167 21 2125 2924 624869989 624869172 2.700000e-115 425.0
45 TraesCS5D01G012700 chr6B 96.970 66 2 0 1 66 78622298 78622233 8.580000e-21 111.0
46 TraesCS5D01G012700 chr7B 80.128 780 112 29 2173 2924 541173704 541172940 2.570000e-150 542.0
47 TraesCS5D01G012700 chr7B 77.852 894 121 32 2084 2928 59717496 59716631 1.580000e-132 483.0
48 TraesCS5D01G012700 chr7B 92.500 80 2 4 1 78 199270426 199270349 8.580000e-21 111.0
49 TraesCS5D01G012700 chr7B 89.394 66 2 5 2023 2086 332009424 332009486 8.700000e-11 78.7
50 TraesCS5D01G012700 chr7D 79.873 790 113 17 2161 2926 548238801 548239568 1.190000e-148 536.0
51 TraesCS5D01G012700 chr7D 78.093 776 136 15 2175 2924 3940892 3941659 7.390000e-126 460.0
52 TraesCS5D01G012700 chr7D 94.444 54 3 0 2031 2084 162157718 162157771 1.870000e-12 84.2
53 TraesCS5D01G012700 chr6A 78.227 767 144 17 2174 2927 564664759 564665515 1.230000e-128 470.0
54 TraesCS5D01G012700 chr4A 78.298 705 142 8 2229 2926 736337613 736336913 7.450000e-121 444.0
55 TraesCS5D01G012700 chr3B 80.280 644 78 10 2308 2928 2174936 2174319 9.630000e-120 440.0
56 TraesCS5D01G012700 chr3B 92.982 57 3 1 2033 2089 12455294 12455349 6.730000e-12 82.4
57 TraesCS5D01G012700 chr1D 77.428 731 133 22 2180 2894 354520630 354521344 9.770000e-110 407.0
58 TraesCS5D01G012700 chr1D 85.915 142 12 7 2084 2220 36560533 36560395 8.460000e-31 145.0
59 TraesCS5D01G012700 chr1D 94.444 72 2 1 1 70 463248137 463248208 3.090000e-20 110.0
60 TraesCS5D01G012700 chr1D 94.444 54 3 0 2031 2084 202963432 202963485 1.870000e-12 84.2
61 TraesCS5D01G012700 chr1D 89.231 65 5 2 2027 2090 333509672 333509609 2.420000e-11 80.5
62 TraesCS5D01G012700 chr4B 73.195 817 151 47 2174 2928 115545435 115544625 1.750000e-57 233.0
63 TraesCS5D01G012700 chr4B 85.417 144 11 8 2084 2220 603990628 603990488 1.090000e-29 141.0
64 TraesCS5D01G012700 chr6D 78.819 288 37 15 2084 2370 392891523 392891259 3.880000e-39 172.0
65 TraesCS5D01G012700 chr6D 96.970 66 2 0 1 66 443958580 443958515 8.580000e-21 111.0
66 TraesCS5D01G012700 chr7A 95.652 69 3 0 1 69 715092102 715092034 8.580000e-21 111.0
67 TraesCS5D01G012700 chr3A 96.970 66 2 0 1 66 368149263 368149328 8.580000e-21 111.0
68 TraesCS5D01G012700 chr2B 94.340 53 3 0 2026 2078 556423782 556423730 6.730000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G012700 chr5D 6931202 6934129 2927 True 5408.000000 5408 100.000000 1 2928 1 chr5D.!!$R1 2927
1 TraesCS5D01G012700 chr5D 72400797 72401462 665 False 481.000000 481 80.000000 1079 1767 1 chr5D.!!$F2 688
2 TraesCS5D01G012700 chr5D 72362144 72362807 663 False 440.000000 440 78.824000 1090 1765 1 chr5D.!!$F1 675
3 TraesCS5D01G012700 chr5D 72492076 72492635 559 False 403.000000 403 79.895000 1200 1765 1 chr5D.!!$F3 565
4 TraesCS5D01G012700 chr5A 4028688 4029346 658 False 717.000000 717 86.275000 2266 2928 1 chr5A.!!$F2 662
5 TraesCS5D01G012700 chr5A 2928399 2929783 1384 False 438.500000 784 89.542500 59 1768 4 chr5A.!!$F4 1709
6 TraesCS5D01G012700 chr5A 64943101 64943656 555 False 425.000000 425 80.776000 1207 1765 1 chr5A.!!$F3 558
7 TraesCS5D01G012700 chr5A 2934224 2935214 990 False 383.500000 887 90.887000 722 1768 3 chr5A.!!$F5 1046
8 TraesCS5D01G012700 chr5A 3032672 3033499 827 False 291.333333 538 86.404333 869 1768 3 chr5A.!!$F6 899
9 TraesCS5D01G012700 chrUn 2234955 2235846 891 True 850.000000 850 84.787000 2084 2928 1 chrUn.!!$R1 844
10 TraesCS5D01G012700 chr1B 654035558 654036402 844 True 835.000000 835 84.760000 2089 2928 1 chr1B.!!$R2 839
11 TraesCS5D01G012700 chr1B 682311752 682312444 692 True 645.000000 645 83.501000 2233 2928 1 chr1B.!!$R3 695
12 TraesCS5D01G012700 chr2D 537508573 537509471 898 False 785.000000 785 83.463000 2084 2928 1 chr2D.!!$F4 844
13 TraesCS5D01G012700 chr2D 82884767 82885465 698 True 579.000000 579 81.740000 2234 2928 1 chr2D.!!$R1 694
14 TraesCS5D01G012700 chr2D 340272693 340273400 707 False 531.000000 531 80.753000 2233 2926 1 chr2D.!!$F1 693
15 TraesCS5D01G012700 chr3D 241394228 241394916 688 True 597.000000 597 82.353000 2233 2928 1 chr3D.!!$R2 695
16 TraesCS5D01G012700 chr3D 253068129 253068897 768 True 296.000000 296 74.454000 2089 2833 1 chr3D.!!$R3 744
17 TraesCS5D01G012700 chr5B 903686 904299 613 True 577.000000 577 83.713000 1066 1676 1 chr5B.!!$R1 610
18 TraesCS5D01G012700 chr5B 81624935 81625530 595 True 483.000000 483 81.609000 1167 1765 1 chr5B.!!$R6 598
19 TraesCS5D01G012700 chr5B 82045323 82045918 595 True 477.000000 477 81.445000 1167 1765 1 chr5B.!!$R8 598
20 TraesCS5D01G012700 chr5B 81781844 81782519 675 True 470.000000 470 79.520000 1065 1767 1 chr5B.!!$R7 702
21 TraesCS5D01G012700 chr5B 82170779 82171368 589 True 444.000000 444 80.333000 1167 1765 1 chr5B.!!$R9 598
22 TraesCS5D01G012700 chr5B 81570926 81571448 522 True 298.000000 298 77.509000 1241 1765 1 chr5B.!!$R4 524
23 TraesCS5D01G012700 chr6B 624834732 624835549 817 True 436.000000 436 76.764000 2125 2924 1 chr6B.!!$R2 799
24 TraesCS5D01G012700 chr6B 624869172 624869989 817 True 425.000000 425 76.521000 2125 2924 1 chr6B.!!$R3 799
25 TraesCS5D01G012700 chr7B 541172940 541173704 764 True 542.000000 542 80.128000 2173 2924 1 chr7B.!!$R3 751
26 TraesCS5D01G012700 chr7B 59716631 59717496 865 True 483.000000 483 77.852000 2084 2928 1 chr7B.!!$R1 844
27 TraesCS5D01G012700 chr7D 548238801 548239568 767 False 536.000000 536 79.873000 2161 2926 1 chr7D.!!$F3 765
28 TraesCS5D01G012700 chr7D 3940892 3941659 767 False 460.000000 460 78.093000 2175 2924 1 chr7D.!!$F1 749
29 TraesCS5D01G012700 chr6A 564664759 564665515 756 False 470.000000 470 78.227000 2174 2927 1 chr6A.!!$F1 753
30 TraesCS5D01G012700 chr4A 736336913 736337613 700 True 444.000000 444 78.298000 2229 2926 1 chr4A.!!$R1 697
31 TraesCS5D01G012700 chr3B 2174319 2174936 617 True 440.000000 440 80.280000 2308 2928 1 chr3B.!!$R1 620
32 TraesCS5D01G012700 chr1D 354520630 354521344 714 False 407.000000 407 77.428000 2180 2894 1 chr1D.!!$F2 714
33 TraesCS5D01G012700 chr4B 115544625 115545435 810 True 233.000000 233 73.195000 2174 2928 1 chr4B.!!$R1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 580 0.175760 TACGTACGTACTCCTCCGCT 59.824 55.0 23.6 0.0 0.0 5.52 F
1503 1565 0.034337 TCACTGCAACGGGTTACTCC 59.966 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 1961 0.108186 TGCCATGTGGATCTGACGAC 60.108 55.0 2.55 0.0 37.39 4.34 R
2464 2622 0.889186 TTTGCTCCCCGTGAAGAAGC 60.889 55.0 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
56 57 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
57 58 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
62 63 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
165 166 2.323999 TCCATTTTGGGCTCCACATT 57.676 45.000 0.00 0.00 38.32 2.71
198 199 8.728596 TTCCTTCTTGGGTTGGAAATAAATAA 57.271 30.769 0.00 0.00 35.87 1.40
254 256 1.616865 GGCCAACAACCCCTTCTTTAC 59.383 52.381 0.00 0.00 0.00 2.01
262 264 7.503230 CCAACAACCCCTTCTTTACTTTTACTA 59.497 37.037 0.00 0.00 0.00 1.82
269 271 8.155510 CCCCTTCTTTACTTTTACTACACTCTT 58.844 37.037 0.00 0.00 0.00 2.85
298 300 8.188799 TGGAAACAATACGTCTAGTAGAAGATG 58.811 37.037 18.46 14.99 35.08 2.90
302 304 7.055378 ACAATACGTCTAGTAGAAGATGAGGT 58.945 38.462 18.46 7.83 38.94 3.85
306 308 4.131596 GTCTAGTAGAAGATGAGGTCGCT 58.868 47.826 0.17 0.00 0.00 4.93
406 408 5.390387 ACCTTATTAAGAAGTTGCCACCAA 58.610 37.500 8.91 0.00 0.00 3.67
425 427 1.238439 AACGACCATTTGCTCCACAG 58.762 50.000 0.00 0.00 0.00 3.66
429 431 2.715046 GACCATTTGCTCCACAGATGA 58.285 47.619 0.00 0.00 42.19 2.92
499 501 5.490139 AACGATGGCAACTTTGATCATAG 57.510 39.130 11.18 11.18 37.61 2.23
518 520 7.681259 TCATAGATGGATGGAAGAAGAAGAA 57.319 36.000 0.00 0.00 0.00 2.52
519 521 7.733969 TCATAGATGGATGGAAGAAGAAGAAG 58.266 38.462 0.00 0.00 0.00 2.85
520 522 7.566509 TCATAGATGGATGGAAGAAGAAGAAGA 59.433 37.037 0.00 0.00 0.00 2.87
565 567 7.715265 ATCATTGATGAAATCCAGTACGTAC 57.285 36.000 18.10 18.10 44.73 3.67
566 568 5.746721 TCATTGATGAAATCCAGTACGTACG 59.253 40.000 19.49 15.01 44.73 3.67
567 569 4.707030 TGATGAAATCCAGTACGTACGT 57.293 40.909 25.98 25.98 44.73 3.57
568 570 5.816449 TGATGAAATCCAGTACGTACGTA 57.184 39.130 23.60 23.60 44.73 3.57
569 571 5.572211 TGATGAAATCCAGTACGTACGTAC 58.428 41.667 38.76 38.76 44.73 3.67
570 572 5.814783 GATGAAATCCAGTACGTACGTACT 58.185 41.667 41.26 41.26 46.82 2.73
571 573 5.906285 GATGAAATCCAGTACGTACGTACTC 59.094 44.000 43.00 33.25 46.37 2.59
572 574 6.999953 GATGAAATCCAGTACGTACGTACTCC 61.000 46.154 43.00 29.54 46.37 3.85
573 575 9.062132 GATGAAATCCAGTACGTACGTACTCCT 62.062 44.444 43.00 30.93 46.37 3.69
577 579 0.301987 GTACGTACGTACTCCTCCGC 59.698 60.000 38.40 18.70 45.30 5.54
578 580 0.175760 TACGTACGTACTCCTCCGCT 59.824 55.000 23.60 0.00 0.00 5.52
579 581 1.351012 CGTACGTACTCCTCCGCTG 59.649 63.158 22.55 0.87 0.00 5.18
580 582 1.726265 GTACGTACTCCTCCGCTGG 59.274 63.158 18.47 0.00 0.00 4.85
581 583 2.117156 TACGTACTCCTCCGCTGGC 61.117 63.158 0.00 0.00 0.00 4.85
582 584 2.547640 TACGTACTCCTCCGCTGGCT 62.548 60.000 0.00 0.00 0.00 4.75
583 585 2.496817 GTACTCCTCCGCTGGCTG 59.503 66.667 0.00 0.00 0.00 4.85
584 586 2.759973 TACTCCTCCGCTGGCTGG 60.760 66.667 0.00 0.00 0.00 4.85
607 609 5.568685 CTGCAAGCTAGTACTAGTCTGAA 57.431 43.478 26.76 18.43 35.65 3.02
608 610 5.955488 CTGCAAGCTAGTACTAGTCTGAAA 58.045 41.667 26.76 15.69 35.65 2.69
609 611 5.710984 TGCAAGCTAGTACTAGTCTGAAAC 58.289 41.667 26.76 11.44 35.65 2.78
610 612 5.243060 TGCAAGCTAGTACTAGTCTGAAACA 59.757 40.000 26.76 17.14 35.65 2.83
611 613 6.157211 GCAAGCTAGTACTAGTCTGAAACAA 58.843 40.000 26.76 0.00 35.65 2.83
612 614 6.814146 GCAAGCTAGTACTAGTCTGAAACAAT 59.186 38.462 26.76 8.53 35.65 2.71
613 615 7.201478 GCAAGCTAGTACTAGTCTGAAACAATG 60.201 40.741 26.76 17.69 35.65 2.82
614 616 7.469537 AGCTAGTACTAGTCTGAAACAATGT 57.530 36.000 26.76 2.04 35.65 2.71
615 617 7.897864 AGCTAGTACTAGTCTGAAACAATGTT 58.102 34.615 26.76 0.00 35.65 2.71
616 618 7.815068 AGCTAGTACTAGTCTGAAACAATGTTG 59.185 37.037 26.76 1.37 35.65 3.33
617 619 7.813148 GCTAGTACTAGTCTGAAACAATGTTGA 59.187 37.037 26.76 0.00 35.65 3.18
618 620 9.347934 CTAGTACTAGTCTGAAACAATGTTGAG 57.652 37.037 20.01 0.00 0.00 3.02
619 621 7.952671 AGTACTAGTCTGAAACAATGTTGAGA 58.047 34.615 0.00 1.67 0.00 3.27
620 622 7.868415 AGTACTAGTCTGAAACAATGTTGAGAC 59.132 37.037 21.66 21.66 31.92 3.36
621 623 6.821388 ACTAGTCTGAAACAATGTTGAGACT 58.179 36.000 28.74 28.74 40.00 3.24
622 624 5.998454 AGTCTGAAACAATGTTGAGACTG 57.002 39.130 26.95 13.10 37.31 3.51
623 625 5.674525 AGTCTGAAACAATGTTGAGACTGA 58.325 37.500 26.95 14.56 37.31 3.41
624 626 6.294473 AGTCTGAAACAATGTTGAGACTGAT 58.706 36.000 26.95 13.01 37.31 2.90
625 627 6.769822 AGTCTGAAACAATGTTGAGACTGATT 59.230 34.615 26.95 12.76 37.31 2.57
626 628 7.041508 AGTCTGAAACAATGTTGAGACTGATTC 60.042 37.037 26.95 9.83 37.31 2.52
627 629 6.994496 TCTGAAACAATGTTGAGACTGATTCT 59.006 34.615 0.00 0.00 37.23 2.40
628 630 7.500227 TCTGAAACAATGTTGAGACTGATTCTT 59.500 33.333 0.00 0.00 33.22 2.52
629 631 7.642669 TGAAACAATGTTGAGACTGATTCTTC 58.357 34.615 0.00 0.00 33.22 2.87
630 632 7.500227 TGAAACAATGTTGAGACTGATTCTTCT 59.500 33.333 0.00 0.00 33.22 2.85
631 633 7.814264 AACAATGTTGAGACTGATTCTTCTT 57.186 32.000 0.00 0.00 33.22 2.52
632 634 7.432350 ACAATGTTGAGACTGATTCTTCTTC 57.568 36.000 0.00 0.00 33.22 2.87
633 635 6.429385 ACAATGTTGAGACTGATTCTTCTTCC 59.571 38.462 0.00 0.00 33.22 3.46
634 636 5.551305 TGTTGAGACTGATTCTTCTTCCA 57.449 39.130 0.00 0.00 33.22 3.53
635 637 6.119240 TGTTGAGACTGATTCTTCTTCCAT 57.881 37.500 0.00 0.00 33.22 3.41
636 638 6.537355 TGTTGAGACTGATTCTTCTTCCATT 58.463 36.000 0.00 0.00 33.22 3.16
637 639 7.000472 TGTTGAGACTGATTCTTCTTCCATTT 59.000 34.615 0.00 0.00 33.22 2.32
638 640 7.503566 TGTTGAGACTGATTCTTCTTCCATTTT 59.496 33.333 0.00 0.00 33.22 1.82
639 641 7.444629 TGAGACTGATTCTTCTTCCATTTTG 57.555 36.000 0.00 0.00 33.22 2.44
640 642 6.432162 TGAGACTGATTCTTCTTCCATTTTGG 59.568 38.462 0.00 0.00 34.66 3.28
641 643 6.546484 AGACTGATTCTTCTTCCATTTTGGA 58.454 36.000 0.00 0.00 46.61 3.53
642 644 7.148272 GAGACTGATTCTTCTTCCATTTTGGAG 60.148 40.741 0.00 0.00 40.71 3.86
652 654 4.387026 TCCATTTTGGAGTGGATTCAGT 57.613 40.909 0.00 0.00 42.67 3.41
653 655 4.081406 TCCATTTTGGAGTGGATTCAGTG 58.919 43.478 0.00 0.00 42.67 3.66
654 656 3.367703 CCATTTTGGAGTGGATTCAGTGC 60.368 47.826 0.00 0.00 40.96 4.40
655 657 2.957402 TTTGGAGTGGATTCAGTGCT 57.043 45.000 1.63 0.00 35.92 4.40
656 658 2.479566 TTGGAGTGGATTCAGTGCTC 57.520 50.000 1.63 0.00 35.92 4.26
657 659 1.649321 TGGAGTGGATTCAGTGCTCT 58.351 50.000 1.63 0.00 35.92 4.09
658 660 1.552337 TGGAGTGGATTCAGTGCTCTC 59.448 52.381 1.63 0.00 37.86 3.20
659 661 1.552337 GGAGTGGATTCAGTGCTCTCA 59.448 52.381 0.00 0.00 39.62 3.27
660 662 2.170187 GGAGTGGATTCAGTGCTCTCAT 59.830 50.000 0.00 0.00 39.62 2.90
661 663 3.196463 GAGTGGATTCAGTGCTCTCATG 58.804 50.000 0.00 0.00 38.29 3.07
662 664 2.836372 AGTGGATTCAGTGCTCTCATGA 59.164 45.455 0.00 0.00 0.00 3.07
663 665 3.262660 AGTGGATTCAGTGCTCTCATGAA 59.737 43.478 0.00 0.00 37.36 2.57
664 666 3.622163 GTGGATTCAGTGCTCTCATGAAG 59.378 47.826 0.00 0.00 36.47 3.02
665 667 3.262660 TGGATTCAGTGCTCTCATGAAGT 59.737 43.478 0.00 0.00 36.47 3.01
666 668 3.622163 GGATTCAGTGCTCTCATGAAGTG 59.378 47.826 0.00 0.00 36.47 3.16
667 669 2.090400 TCAGTGCTCTCATGAAGTGC 57.910 50.000 0.00 4.76 43.34 4.40
675 677 5.673514 TGCTCTCATGAAGTGCATATTACA 58.326 37.500 14.01 0.00 46.61 2.41
676 678 6.293698 TGCTCTCATGAAGTGCATATTACAT 58.706 36.000 14.01 0.00 46.61 2.29
677 679 6.769341 TGCTCTCATGAAGTGCATATTACATT 59.231 34.615 14.01 0.00 46.61 2.71
678 680 7.283807 TGCTCTCATGAAGTGCATATTACATTT 59.716 33.333 14.01 0.00 46.61 2.32
679 681 8.133627 GCTCTCATGAAGTGCATATTACATTTT 58.866 33.333 0.00 0.00 42.73 1.82
706 708 9.859427 TTTTAATAAGAAGTGCAGATCAATTGG 57.141 29.630 5.42 0.00 32.52 3.16
707 709 3.863142 AAGAAGTGCAGATCAATTGGC 57.137 42.857 5.42 1.34 32.52 4.52
708 710 3.083122 AGAAGTGCAGATCAATTGGCT 57.917 42.857 5.42 0.64 32.52 4.75
709 711 4.226427 AGAAGTGCAGATCAATTGGCTA 57.774 40.909 5.42 0.00 32.52 3.93
710 712 3.944015 AGAAGTGCAGATCAATTGGCTAC 59.056 43.478 5.42 0.00 32.52 3.58
711 713 3.641434 AGTGCAGATCAATTGGCTACT 57.359 42.857 5.42 5.00 0.00 2.57
712 714 4.760530 AGTGCAGATCAATTGGCTACTA 57.239 40.909 5.42 0.00 0.00 1.82
713 715 4.701765 AGTGCAGATCAATTGGCTACTAG 58.298 43.478 5.42 0.00 0.00 2.57
714 716 3.812053 GTGCAGATCAATTGGCTACTAGG 59.188 47.826 5.42 0.00 0.00 3.02
715 717 3.455910 TGCAGATCAATTGGCTACTAGGT 59.544 43.478 5.42 0.00 0.00 3.08
716 718 4.061596 GCAGATCAATTGGCTACTAGGTC 58.938 47.826 5.42 0.00 0.00 3.85
717 719 4.302455 CAGATCAATTGGCTACTAGGTCG 58.698 47.826 5.42 0.00 0.00 4.79
718 720 4.038042 CAGATCAATTGGCTACTAGGTCGA 59.962 45.833 5.42 0.00 0.00 4.20
719 721 4.279671 AGATCAATTGGCTACTAGGTCGAG 59.720 45.833 5.42 0.00 0.00 4.04
720 722 3.362706 TCAATTGGCTACTAGGTCGAGT 58.637 45.455 5.42 0.00 0.00 4.18
737 739 5.005779 GGTCGAGTAGTGCAAATTAGTCATG 59.994 44.000 0.00 0.00 0.00 3.07
763 765 3.001939 GGTCACGAAACGATGTCAACTTT 59.998 43.478 0.00 0.00 0.00 2.66
764 766 3.960002 GTCACGAAACGATGTCAACTTTG 59.040 43.478 0.00 0.00 0.00 2.77
765 767 3.866327 TCACGAAACGATGTCAACTTTGA 59.134 39.130 0.00 0.00 34.20 2.69
766 768 4.509970 TCACGAAACGATGTCAACTTTGAT 59.490 37.500 0.00 0.00 39.73 2.57
767 769 4.840772 CACGAAACGATGTCAACTTTGATC 59.159 41.667 0.00 0.00 39.73 2.92
768 770 4.509970 ACGAAACGATGTCAACTTTGATCA 59.490 37.500 0.00 0.00 39.73 2.92
769 771 5.179368 ACGAAACGATGTCAACTTTGATCAT 59.821 36.000 0.00 1.63 39.73 2.45
770 772 5.729883 CGAAACGATGTCAACTTTGATCATC 59.270 40.000 16.50 16.50 39.73 2.92
771 773 6.558771 AAACGATGTCAACTTTGATCATCA 57.441 33.333 21.39 8.13 41.01 3.07
772 774 6.558771 AACGATGTCAACTTTGATCATCAA 57.441 33.333 21.39 0.00 41.01 2.57
773 775 6.748333 ACGATGTCAACTTTGATCATCAAT 57.252 33.333 21.39 13.13 41.01 2.57
774 776 6.779117 ACGATGTCAACTTTGATCATCAATC 58.221 36.000 21.39 0.00 41.01 2.67
775 777 6.372381 ACGATGTCAACTTTGATCATCAATCA 59.628 34.615 21.39 6.35 42.76 2.57
776 778 7.066645 ACGATGTCAACTTTGATCATCAATCAT 59.933 33.333 21.39 9.54 43.87 2.45
777 779 8.553696 CGATGTCAACTTTGATCATCAATCATA 58.446 33.333 21.39 0.00 43.87 2.15
780 782 8.186163 TGTCAACTTTGATCATCAATCATAAGC 58.814 33.333 0.00 0.00 43.87 3.09
781 783 8.404000 GTCAACTTTGATCATCAATCATAAGCT 58.596 33.333 0.00 0.00 43.87 3.74
782 784 8.963725 TCAACTTTGATCATCAATCATAAGCTT 58.036 29.630 3.48 3.48 43.87 3.74
783 785 9.020813 CAACTTTGATCATCAATCATAAGCTTG 57.979 33.333 9.86 0.00 43.87 4.01
784 786 8.515695 ACTTTGATCATCAATCATAAGCTTGA 57.484 30.769 9.86 0.00 43.87 3.02
785 787 8.622157 ACTTTGATCATCAATCATAAGCTTGAG 58.378 33.333 9.86 0.97 43.87 3.02
786 788 8.515695 TTTGATCATCAATCATAAGCTTGAGT 57.484 30.769 9.86 0.00 43.87 3.41
787 789 9.617523 TTTGATCATCAATCATAAGCTTGAGTA 57.382 29.630 9.86 0.00 43.87 2.59
788 790 9.788889 TTGATCATCAATCATAAGCTTGAGTAT 57.211 29.630 9.86 0.00 43.87 2.12
881 895 5.759059 TGAGAGCCCACTAATGAATCAATT 58.241 37.500 0.00 0.00 0.00 2.32
888 902 6.980397 GCCCACTAATGAATCAATTTAAGTGG 59.020 38.462 18.00 18.00 41.72 4.00
944 958 1.537202 CTTCCAGACGGCTTTCCAAAG 59.463 52.381 0.00 0.00 39.03 2.77
964 993 2.592308 GCCCGAGCCAATCTCCTT 59.408 61.111 0.00 0.00 38.62 3.36
1001 1035 0.865111 TCCACGCGACACAAAATCAG 59.135 50.000 15.93 0.00 0.00 2.90
1010 1044 5.393124 GCGACACAAAATCAGAATCAATCA 58.607 37.500 0.00 0.00 0.00 2.57
1028 1062 3.334583 TCAAGGGTTTCTTCCAGATCG 57.665 47.619 0.00 0.00 32.41 3.69
1029 1063 2.903784 TCAAGGGTTTCTTCCAGATCGA 59.096 45.455 0.00 0.00 32.41 3.59
1030 1064 3.326588 TCAAGGGTTTCTTCCAGATCGAA 59.673 43.478 0.00 0.00 32.41 3.71
1031 1065 3.618690 AGGGTTTCTTCCAGATCGAAG 57.381 47.619 4.47 4.47 40.59 3.79
1032 1066 3.173965 AGGGTTTCTTCCAGATCGAAGA 58.826 45.455 8.49 8.49 45.07 2.87
1033 1067 3.777522 AGGGTTTCTTCCAGATCGAAGAT 59.222 43.478 12.18 0.00 45.80 2.40
1034 1068 4.123506 GGGTTTCTTCCAGATCGAAGATC 58.876 47.826 12.18 2.02 45.80 2.75
1035 1069 4.383118 GGGTTTCTTCCAGATCGAAGATCA 60.383 45.833 12.18 2.69 45.80 2.92
1036 1070 5.363939 GGTTTCTTCCAGATCGAAGATCAT 58.636 41.667 12.18 0.00 45.80 2.45
1037 1071 5.465056 GGTTTCTTCCAGATCGAAGATCATC 59.535 44.000 12.18 0.00 45.80 2.92
1038 1072 5.859205 TTCTTCCAGATCGAAGATCATCA 57.141 39.130 12.18 0.00 45.80 3.07
1039 1073 5.193663 TCTTCCAGATCGAAGATCATCAC 57.806 43.478 11.94 0.00 42.58 3.06
1040 1074 3.632855 TCCAGATCGAAGATCATCACG 57.367 47.619 11.94 0.00 45.12 4.35
1041 1075 2.952310 TCCAGATCGAAGATCATCACGT 59.048 45.455 11.94 0.00 45.12 4.49
1042 1076 4.134563 TCCAGATCGAAGATCATCACGTA 58.865 43.478 11.94 0.00 45.12 3.57
1043 1077 4.023963 TCCAGATCGAAGATCATCACGTAC 60.024 45.833 11.94 0.00 45.12 3.67
1044 1078 4.023622 CCAGATCGAAGATCATCACGTACT 60.024 45.833 11.94 3.50 45.12 2.73
1045 1079 5.179555 CCAGATCGAAGATCATCACGTACTA 59.820 44.000 11.94 0.00 45.12 1.82
1046 1080 6.074642 CAGATCGAAGATCATCACGTACTAC 58.925 44.000 11.94 0.00 45.12 2.73
1047 1081 5.758784 AGATCGAAGATCATCACGTACTACA 59.241 40.000 11.94 0.00 45.12 2.74
1048 1082 5.806366 TCGAAGATCATCACGTACTACAA 57.194 39.130 0.00 0.00 0.00 2.41
1049 1083 6.185852 TCGAAGATCATCACGTACTACAAA 57.814 37.500 0.00 0.00 0.00 2.83
1050 1084 6.025896 TCGAAGATCATCACGTACTACAAAC 58.974 40.000 0.00 0.00 0.00 2.93
1051 1085 5.798434 CGAAGATCATCACGTACTACAAACA 59.202 40.000 0.00 0.00 0.00 2.83
1052 1086 6.307077 CGAAGATCATCACGTACTACAAACAA 59.693 38.462 0.00 0.00 0.00 2.83
1053 1087 7.009265 CGAAGATCATCACGTACTACAAACAAT 59.991 37.037 0.00 0.00 0.00 2.71
1054 1088 8.547967 AAGATCATCACGTACTACAAACAATT 57.452 30.769 0.00 0.00 0.00 2.32
1055 1089 7.963981 AGATCATCACGTACTACAAACAATTG 58.036 34.615 3.24 3.24 42.46 2.32
1056 1090 5.922546 TCATCACGTACTACAAACAATTGC 58.077 37.500 5.05 0.00 40.34 3.56
1057 1091 5.467063 TCATCACGTACTACAAACAATTGCA 59.533 36.000 5.05 0.00 40.34 4.08
1058 1092 5.736486 TCACGTACTACAAACAATTGCAA 57.264 34.783 5.05 0.00 40.34 4.08
1059 1093 6.307031 TCACGTACTACAAACAATTGCAAT 57.693 33.333 5.99 5.99 40.34 3.56
1060 1094 6.367421 TCACGTACTACAAACAATTGCAATC 58.633 36.000 13.38 0.00 40.34 2.67
1061 1095 6.017852 TCACGTACTACAAACAATTGCAATCA 60.018 34.615 13.38 0.00 40.34 2.57
1062 1096 6.634837 CACGTACTACAAACAATTGCAATCAA 59.365 34.615 13.38 0.00 40.34 2.57
1063 1097 7.166638 CACGTACTACAAACAATTGCAATCAAA 59.833 33.333 13.38 0.00 40.34 2.69
1319 1354 3.998672 TCGTTCGCCGGCCTCTTT 61.999 61.111 23.46 0.00 37.11 2.52
1322 1357 2.112297 TTCGCCGGCCTCTTTGTT 59.888 55.556 23.46 0.00 0.00 2.83
1474 1536 1.548973 GATGATTGGCGCGACTACCG 61.549 60.000 15.80 0.00 42.21 4.02
1497 1559 1.296715 GAGGATCACTGCAACGGGT 59.703 57.895 0.00 0.00 33.17 5.28
1503 1565 0.034337 TCACTGCAACGGGTTACTCC 59.966 55.000 0.00 0.00 0.00 3.85
1511 1573 0.542232 ACGGGTTACTCCTGCTCAGT 60.542 55.000 0.00 0.00 46.11 3.41
1532 1594 4.576053 AGTAAAAACTGTGTCGTTAACCCC 59.424 41.667 0.00 0.00 0.00 4.95
1705 1777 2.266055 GGGAGACAAGGCAGACCG 59.734 66.667 0.00 0.00 42.76 4.79
1768 1840 9.722184 CAAGATGTATATGTTCTCATCAAGGAT 57.278 33.333 0.00 0.00 39.06 3.24
1770 1842 9.941325 AGATGTATATGTTCTCATCAAGGATTC 57.059 33.333 0.00 0.00 39.06 2.52
1771 1843 9.941325 GATGTATATGTTCTCATCAAGGATTCT 57.059 33.333 0.00 0.00 37.30 2.40
1772 1844 9.722184 ATGTATATGTTCTCATCAAGGATTCTG 57.278 33.333 0.00 0.00 35.70 3.02
1773 1845 8.927411 TGTATATGTTCTCATCAAGGATTCTGA 58.073 33.333 0.00 0.00 35.70 3.27
1774 1846 9.770097 GTATATGTTCTCATCAAGGATTCTGAA 57.230 33.333 0.00 0.00 35.70 3.02
1776 1848 9.690913 ATATGTTCTCATCAAGGATTCTGAAAA 57.309 29.630 0.00 0.00 35.70 2.29
1777 1849 7.822161 TGTTCTCATCAAGGATTCTGAAAAA 57.178 32.000 0.00 0.00 0.00 1.94
1807 1879 8.851541 ACATTTTTAAAACATGAATGATGCCT 57.148 26.923 20.36 0.00 35.15 4.75
1808 1880 8.938906 ACATTTTTAAAACATGAATGATGCCTC 58.061 29.630 20.36 0.00 35.15 4.70
1809 1881 7.903995 TTTTTAAAACATGAATGATGCCTCC 57.096 32.000 0.00 0.00 35.15 4.30
1810 1882 6.602410 TTTAAAACATGAATGATGCCTCCA 57.398 33.333 0.00 0.00 35.15 3.86
1811 1883 4.460948 AAAACATGAATGATGCCTCCAC 57.539 40.909 0.00 0.00 35.15 4.02
1812 1884 2.812836 ACATGAATGATGCCTCCACA 57.187 45.000 0.00 0.00 35.15 4.17
1813 1885 3.090210 ACATGAATGATGCCTCCACAA 57.910 42.857 0.00 0.00 35.15 3.33
1814 1886 3.433343 ACATGAATGATGCCTCCACAAA 58.567 40.909 0.00 0.00 35.15 2.83
1815 1887 3.833650 ACATGAATGATGCCTCCACAAAA 59.166 39.130 0.00 0.00 35.15 2.44
1816 1888 4.468510 ACATGAATGATGCCTCCACAAAAT 59.531 37.500 0.00 0.00 35.15 1.82
1817 1889 5.046159 ACATGAATGATGCCTCCACAAAATT 60.046 36.000 0.00 0.00 35.15 1.82
1818 1890 4.823157 TGAATGATGCCTCCACAAAATTG 58.177 39.130 0.00 0.00 0.00 2.32
1819 1891 4.527427 TGAATGATGCCTCCACAAAATTGA 59.473 37.500 0.00 0.00 0.00 2.57
1820 1892 5.188163 TGAATGATGCCTCCACAAAATTGAT 59.812 36.000 0.00 0.00 0.00 2.57
1821 1893 5.687166 ATGATGCCTCCACAAAATTGATT 57.313 34.783 0.00 0.00 0.00 2.57
1822 1894 5.486735 TGATGCCTCCACAAAATTGATTT 57.513 34.783 0.00 0.00 0.00 2.17
1823 1895 5.867330 TGATGCCTCCACAAAATTGATTTT 58.133 33.333 0.00 0.00 40.37 1.82
1824 1896 6.297582 TGATGCCTCCACAAAATTGATTTTT 58.702 32.000 0.00 0.00 37.86 1.94
1825 1897 6.427547 TGATGCCTCCACAAAATTGATTTTTC 59.572 34.615 0.00 0.00 37.86 2.29
1826 1898 4.749099 TGCCTCCACAAAATTGATTTTTCG 59.251 37.500 0.00 0.00 37.86 3.46
1827 1899 4.749598 GCCTCCACAAAATTGATTTTTCGT 59.250 37.500 0.00 0.00 37.86 3.85
1828 1900 5.236263 GCCTCCACAAAATTGATTTTTCGTT 59.764 36.000 0.00 0.00 37.86 3.85
1829 1901 6.238347 GCCTCCACAAAATTGATTTTTCGTTT 60.238 34.615 0.00 0.00 37.86 3.60
1830 1902 7.344441 CCTCCACAAAATTGATTTTTCGTTTC 58.656 34.615 0.00 0.00 37.86 2.78
1831 1903 7.010923 CCTCCACAAAATTGATTTTTCGTTTCA 59.989 33.333 0.00 0.00 37.86 2.69
1832 1904 8.256611 TCCACAAAATTGATTTTTCGTTTCAA 57.743 26.923 0.00 0.00 37.86 2.69
1833 1905 8.721478 TCCACAAAATTGATTTTTCGTTTCAAA 58.279 25.926 0.00 0.00 37.86 2.69
1834 1906 9.334693 CCACAAAATTGATTTTTCGTTTCAAAA 57.665 25.926 0.00 0.00 37.86 2.44
1851 1923 2.358322 AAAAACCCTGATGACCGTGT 57.642 45.000 0.00 0.00 0.00 4.49
1852 1924 1.604604 AAAACCCTGATGACCGTGTG 58.395 50.000 0.00 0.00 0.00 3.82
1853 1925 0.250727 AAACCCTGATGACCGTGTGG 60.251 55.000 0.00 0.00 42.84 4.17
1869 1941 6.194796 CCGTGTGGTTAAAATTGATCATCT 57.805 37.500 0.00 0.00 0.00 2.90
1870 1942 6.258160 CCGTGTGGTTAAAATTGATCATCTC 58.742 40.000 0.00 0.00 0.00 2.75
1871 1943 6.094048 CCGTGTGGTTAAAATTGATCATCTCT 59.906 38.462 0.00 0.00 0.00 3.10
1872 1944 7.279981 CCGTGTGGTTAAAATTGATCATCTCTA 59.720 37.037 0.00 0.00 0.00 2.43
1873 1945 8.830580 CGTGTGGTTAAAATTGATCATCTCTAT 58.169 33.333 0.00 0.00 0.00 1.98
1874 1946 9.941664 GTGTGGTTAAAATTGATCATCTCTATG 57.058 33.333 0.00 0.00 0.00 2.23
1875 1947 9.123902 TGTGGTTAAAATTGATCATCTCTATGG 57.876 33.333 0.00 0.00 33.61 2.74
1876 1948 8.078596 GTGGTTAAAATTGATCATCTCTATGGC 58.921 37.037 0.00 0.00 33.61 4.40
1877 1949 7.779326 TGGTTAAAATTGATCATCTCTATGGCA 59.221 33.333 0.00 0.00 33.61 4.92
1878 1950 8.295288 GGTTAAAATTGATCATCTCTATGGCAG 58.705 37.037 0.00 0.00 33.61 4.85
1879 1951 9.060347 GTTAAAATTGATCATCTCTATGGCAGA 57.940 33.333 0.00 0.00 33.61 4.26
1880 1952 9.803507 TTAAAATTGATCATCTCTATGGCAGAT 57.196 29.630 0.00 0.00 33.61 2.90
1881 1953 7.689446 AAATTGATCATCTCTATGGCAGATG 57.311 36.000 7.85 7.85 46.04 2.90
1882 1954 4.820894 TGATCATCTCTATGGCAGATGG 57.179 45.455 12.75 0.00 45.14 3.51
1883 1955 3.518303 TGATCATCTCTATGGCAGATGGG 59.482 47.826 12.75 0.00 45.14 4.00
1884 1956 2.263545 TCATCTCTATGGCAGATGGGG 58.736 52.381 12.75 0.00 45.14 4.96
1885 1957 0.990374 ATCTCTATGGCAGATGGGGC 59.010 55.000 0.00 0.00 31.13 5.80
1899 1971 4.222847 GGGCCCGGTCGTCAGATC 62.223 72.222 5.69 0.00 0.00 2.75
1900 1972 4.222847 GGCCCGGTCGTCAGATCC 62.223 72.222 0.00 0.00 0.00 3.36
1901 1973 3.458163 GCCCGGTCGTCAGATCCA 61.458 66.667 0.00 0.00 0.00 3.41
1902 1974 2.494918 CCCGGTCGTCAGATCCAC 59.505 66.667 0.00 0.00 0.00 4.02
1903 1975 2.348104 CCCGGTCGTCAGATCCACA 61.348 63.158 0.00 0.00 0.00 4.17
1904 1976 1.676678 CCCGGTCGTCAGATCCACAT 61.677 60.000 0.00 0.00 0.00 3.21
1905 1977 0.528466 CCGGTCGTCAGATCCACATG 60.528 60.000 0.00 0.00 0.00 3.21
1906 1978 0.528466 CGGTCGTCAGATCCACATGG 60.528 60.000 0.00 0.00 0.00 3.66
1907 1979 0.811616 GGTCGTCAGATCCACATGGC 60.812 60.000 0.00 0.00 34.44 4.40
1908 1980 0.108186 GTCGTCAGATCCACATGGCA 60.108 55.000 0.00 0.00 34.44 4.92
1909 1981 0.612744 TCGTCAGATCCACATGGCAA 59.387 50.000 0.00 0.00 34.44 4.52
1910 1982 0.729116 CGTCAGATCCACATGGCAAC 59.271 55.000 0.00 0.00 34.44 4.17
1929 2001 6.583562 GGCAACAAATATAGACTCCACTAGT 58.416 40.000 0.00 0.00 42.80 2.57
1940 2012 4.974645 ACTCCACTAGTCAAACCATGAA 57.025 40.909 0.00 0.00 40.50 2.57
1941 2013 4.899502 ACTCCACTAGTCAAACCATGAAG 58.100 43.478 0.00 0.00 40.50 3.02
1942 2014 4.348168 ACTCCACTAGTCAAACCATGAAGT 59.652 41.667 0.00 0.00 40.50 3.01
1943 2015 4.894784 TCCACTAGTCAAACCATGAAGTC 58.105 43.478 0.00 0.00 40.50 3.01
1944 2016 4.346709 TCCACTAGTCAAACCATGAAGTCA 59.653 41.667 0.00 0.00 40.50 3.41
1945 2017 5.063204 CCACTAGTCAAACCATGAAGTCAA 58.937 41.667 0.00 0.00 40.50 3.18
1946 2018 5.530915 CCACTAGTCAAACCATGAAGTCAAA 59.469 40.000 0.00 0.00 40.50 2.69
1947 2019 6.430451 CACTAGTCAAACCATGAAGTCAAAC 58.570 40.000 0.00 0.00 40.50 2.93
1948 2020 6.038161 CACTAGTCAAACCATGAAGTCAAACA 59.962 38.462 0.00 0.00 40.50 2.83
1949 2021 5.505173 AGTCAAACCATGAAGTCAAACAG 57.495 39.130 0.00 0.00 40.50 3.16
1950 2022 5.192927 AGTCAAACCATGAAGTCAAACAGA 58.807 37.500 0.00 0.00 40.50 3.41
1951 2023 5.829924 AGTCAAACCATGAAGTCAAACAGAT 59.170 36.000 0.00 0.00 40.50 2.90
1952 2024 5.916883 GTCAAACCATGAAGTCAAACAGATG 59.083 40.000 0.00 0.00 40.50 2.90
1953 2025 5.009911 TCAAACCATGAAGTCAAACAGATGG 59.990 40.000 0.00 0.00 34.30 3.51
1954 2026 2.821969 ACCATGAAGTCAAACAGATGGC 59.178 45.455 0.00 0.00 0.00 4.40
1955 2027 2.165030 CCATGAAGTCAAACAGATGGCC 59.835 50.000 0.00 0.00 0.00 5.36
1956 2028 2.655090 TGAAGTCAAACAGATGGCCA 57.345 45.000 8.56 8.56 0.00 5.36
1957 2029 3.159213 TGAAGTCAAACAGATGGCCAT 57.841 42.857 20.96 20.96 0.00 4.40
1958 2030 3.499338 TGAAGTCAAACAGATGGCCATT 58.501 40.909 21.84 7.16 0.00 3.16
1959 2031 3.256383 TGAAGTCAAACAGATGGCCATTG 59.744 43.478 21.84 20.64 0.00 2.82
1960 2032 3.159213 AGTCAAACAGATGGCCATTGA 57.841 42.857 21.84 17.05 0.00 2.57
1961 2033 3.087031 AGTCAAACAGATGGCCATTGAG 58.913 45.455 21.84 15.01 31.24 3.02
1962 2034 3.084039 GTCAAACAGATGGCCATTGAGA 58.916 45.455 21.84 15.70 31.24 3.27
1963 2035 3.698040 GTCAAACAGATGGCCATTGAGAT 59.302 43.478 21.84 4.83 31.24 2.75
1964 2036 4.883585 GTCAAACAGATGGCCATTGAGATA 59.116 41.667 21.84 0.33 31.24 1.98
1965 2037 5.008415 GTCAAACAGATGGCCATTGAGATAG 59.992 44.000 21.84 8.04 31.24 2.08
1966 2038 5.104402 TCAAACAGATGGCCATTGAGATAGA 60.104 40.000 21.84 10.30 0.00 1.98
1967 2039 4.348863 ACAGATGGCCATTGAGATAGAC 57.651 45.455 21.84 3.14 0.00 2.59
1968 2040 3.713248 ACAGATGGCCATTGAGATAGACA 59.287 43.478 21.84 0.00 0.00 3.41
1969 2041 4.202336 ACAGATGGCCATTGAGATAGACAG 60.202 45.833 21.84 2.86 0.00 3.51
1970 2042 3.327172 AGATGGCCATTGAGATAGACAGG 59.673 47.826 21.84 0.00 0.00 4.00
1971 2043 2.481441 TGGCCATTGAGATAGACAGGT 58.519 47.619 0.00 0.00 0.00 4.00
1972 2044 2.171237 TGGCCATTGAGATAGACAGGTG 59.829 50.000 0.00 0.00 0.00 4.00
1973 2045 2.486191 GGCCATTGAGATAGACAGGTGG 60.486 54.545 0.00 0.00 0.00 4.61
1974 2046 2.486191 GCCATTGAGATAGACAGGTGGG 60.486 54.545 0.00 0.00 0.00 4.61
1975 2047 2.105477 CCATTGAGATAGACAGGTGGGG 59.895 54.545 0.00 0.00 0.00 4.96
1976 2048 1.204146 TTGAGATAGACAGGTGGGGC 58.796 55.000 0.00 0.00 0.00 5.80
1977 2049 0.691078 TGAGATAGACAGGTGGGGCC 60.691 60.000 0.00 0.00 37.58 5.80
1978 2050 1.384643 AGATAGACAGGTGGGGCCC 60.385 63.158 18.17 18.17 38.26 5.80
1979 2051 2.768344 ATAGACAGGTGGGGCCCG 60.768 66.667 19.83 5.76 38.26 6.13
1992 2064 4.070552 GCCCGGTCGTCAGCTTCT 62.071 66.667 0.00 0.00 0.00 2.85
1993 2065 2.657237 CCCGGTCGTCAGCTTCTT 59.343 61.111 0.00 0.00 0.00 2.52
1994 2066 1.888018 CCCGGTCGTCAGCTTCTTA 59.112 57.895 0.00 0.00 0.00 2.10
1995 2067 0.460311 CCCGGTCGTCAGCTTCTTAT 59.540 55.000 0.00 0.00 0.00 1.73
1996 2068 1.134788 CCCGGTCGTCAGCTTCTTATT 60.135 52.381 0.00 0.00 0.00 1.40
1997 2069 2.194271 CCGGTCGTCAGCTTCTTATTC 58.806 52.381 0.00 0.00 0.00 1.75
1998 2070 2.159226 CCGGTCGTCAGCTTCTTATTCT 60.159 50.000 0.00 0.00 0.00 2.40
1999 2071 3.109619 CGGTCGTCAGCTTCTTATTCTC 58.890 50.000 0.00 0.00 0.00 2.87
2000 2072 3.427638 CGGTCGTCAGCTTCTTATTCTCA 60.428 47.826 0.00 0.00 0.00 3.27
2001 2073 4.688021 GGTCGTCAGCTTCTTATTCTCAT 58.312 43.478 0.00 0.00 0.00 2.90
2002 2074 5.505819 CGGTCGTCAGCTTCTTATTCTCATA 60.506 44.000 0.00 0.00 0.00 2.15
2003 2075 6.451393 GGTCGTCAGCTTCTTATTCTCATAT 58.549 40.000 0.00 0.00 0.00 1.78
2004 2076 6.584563 GGTCGTCAGCTTCTTATTCTCATATC 59.415 42.308 0.00 0.00 0.00 1.63
2005 2077 7.367285 GTCGTCAGCTTCTTATTCTCATATCT 58.633 38.462 0.00 0.00 0.00 1.98
2006 2078 7.537306 GTCGTCAGCTTCTTATTCTCATATCTC 59.463 40.741 0.00 0.00 0.00 2.75
2007 2079 7.446931 TCGTCAGCTTCTTATTCTCATATCTCT 59.553 37.037 0.00 0.00 0.00 3.10
2008 2080 8.081633 CGTCAGCTTCTTATTCTCATATCTCTT 58.918 37.037 0.00 0.00 0.00 2.85
2009 2081 9.410556 GTCAGCTTCTTATTCTCATATCTCTTC 57.589 37.037 0.00 0.00 0.00 2.87
2010 2082 8.584157 TCAGCTTCTTATTCTCATATCTCTTCC 58.416 37.037 0.00 0.00 0.00 3.46
2011 2083 8.587608 CAGCTTCTTATTCTCATATCTCTTCCT 58.412 37.037 0.00 0.00 0.00 3.36
2012 2084 8.806146 AGCTTCTTATTCTCATATCTCTTCCTC 58.194 37.037 0.00 0.00 0.00 3.71
2013 2085 8.806146 GCTTCTTATTCTCATATCTCTTCCTCT 58.194 37.037 0.00 0.00 0.00 3.69
2020 2092 8.837099 TTCTCATATCTCTTCCTCTTTTCTCT 57.163 34.615 0.00 0.00 0.00 3.10
2021 2093 9.928618 TTCTCATATCTCTTCCTCTTTTCTCTA 57.071 33.333 0.00 0.00 0.00 2.43
2027 2099 8.622572 ATCTCTTCCTCTTTTCTCTATTTCCT 57.377 34.615 0.00 0.00 0.00 3.36
2028 2100 8.442660 TCTCTTCCTCTTTTCTCTATTTCCTT 57.557 34.615 0.00 0.00 0.00 3.36
2029 2101 9.548631 TCTCTTCCTCTTTTCTCTATTTCCTTA 57.451 33.333 0.00 0.00 0.00 2.69
2033 2105 9.892130 TTCCTCTTTTCTCTATTTCCTTATGAC 57.108 33.333 0.00 0.00 0.00 3.06
2034 2106 8.198109 TCCTCTTTTCTCTATTTCCTTATGACG 58.802 37.037 0.00 0.00 0.00 4.35
2035 2107 8.198109 CCTCTTTTCTCTATTTCCTTATGACGA 58.802 37.037 0.00 0.00 0.00 4.20
2036 2108 9.757227 CTCTTTTCTCTATTTCCTTATGACGAT 57.243 33.333 0.00 0.00 0.00 3.73
2041 2113 9.982651 TTCTCTATTTCCTTATGACGATAAAGG 57.017 33.333 0.00 0.00 0.00 3.11
2042 2114 8.585881 TCTCTATTTCCTTATGACGATAAAGGG 58.414 37.037 0.00 0.00 0.00 3.95
2043 2115 8.258850 TCTATTTCCTTATGACGATAAAGGGT 57.741 34.615 0.00 0.00 0.00 4.34
2044 2116 8.711170 TCTATTTCCTTATGACGATAAAGGGTT 58.289 33.333 0.00 0.00 0.00 4.11
2045 2117 9.338622 CTATTTCCTTATGACGATAAAGGGTTT 57.661 33.333 0.00 0.00 0.00 3.27
2046 2118 7.619964 TTTCCTTATGACGATAAAGGGTTTC 57.380 36.000 0.00 0.00 0.00 2.78
2047 2119 5.677567 TCCTTATGACGATAAAGGGTTTCC 58.322 41.667 0.00 0.00 0.00 3.13
2048 2120 4.820173 CCTTATGACGATAAAGGGTTTCCC 59.180 45.833 0.00 0.00 45.90 3.97
2059 2131 2.670019 GGGTTTCCCCCGCTTTATAT 57.330 50.000 0.00 0.00 45.80 0.86
2060 2132 2.953453 GGGTTTCCCCCGCTTTATATT 58.047 47.619 0.00 0.00 45.80 1.28
2061 2133 4.103013 GGGTTTCCCCCGCTTTATATTA 57.897 45.455 0.00 0.00 45.80 0.98
2062 2134 4.669700 GGGTTTCCCCCGCTTTATATTAT 58.330 43.478 0.00 0.00 45.80 1.28
2063 2135 5.818887 GGGTTTCCCCCGCTTTATATTATA 58.181 41.667 0.00 0.00 45.80 0.98
2064 2136 6.247676 GGGTTTCCCCCGCTTTATATTATAA 58.752 40.000 0.00 0.00 45.80 0.98
2065 2137 6.720748 GGGTTTCCCCCGCTTTATATTATAAA 59.279 38.462 8.26 8.26 45.80 1.40
2066 2138 7.094075 GGGTTTCCCCCGCTTTATATTATAAAG 60.094 40.741 23.28 23.28 45.80 1.85
2098 2172 6.386654 CCAATACAACAAACTAGGCGATTTT 58.613 36.000 0.00 0.00 0.00 1.82
2153 2230 9.308318 ACACAAATTAAGAACGCAAACTAAAAT 57.692 25.926 0.00 0.00 0.00 1.82
2170 2253 4.893601 TCAACAACGCCGTCGCCA 62.894 61.111 0.00 0.00 39.84 5.69
2221 2323 1.541588 GTAGAACCGGGTGTAGTCGTT 59.458 52.381 6.32 0.00 0.00 3.85
2223 2325 0.032540 GAACCGGGTGTAGTCGTTGT 59.967 55.000 6.32 0.00 0.00 3.32
2225 2327 1.108727 ACCGGGTGTAGTCGTTGTCA 61.109 55.000 6.32 0.00 0.00 3.58
2240 2375 4.470170 TCATCGTCACCGCCGTCG 62.470 66.667 0.00 0.00 0.00 5.12
2396 2554 3.126879 CGCTGGCGCTCCATTTGA 61.127 61.111 7.64 0.00 42.51 2.69
2406 2564 0.302890 CTCCATTTGATCGCAGACGC 59.697 55.000 0.00 0.00 42.51 5.19
2528 2695 1.269703 GGCGGTAGGAAGAAGGGGAA 61.270 60.000 0.00 0.00 0.00 3.97
2531 2698 0.547075 GGTAGGAAGAAGGGGAAGGC 59.453 60.000 0.00 0.00 0.00 4.35
2559 2738 0.670546 CTCGTTGATGACAAGGGCGT 60.671 55.000 0.00 0.00 40.75 5.68
2560 2739 0.250124 TCGTTGATGACAAGGGCGTT 60.250 50.000 0.00 0.00 40.75 4.84
2646 2828 1.548357 GCCAGAGGACAGAGAGCCAA 61.548 60.000 0.00 0.00 0.00 4.52
2862 3092 2.959071 GCGATCTGCTCCTCGTGC 60.959 66.667 0.00 0.00 41.73 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
30 31 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
31 32 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
32 33 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
33 34 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
34 35 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
35 36 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
36 37 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
39 40 9.819754 AATAGTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
40 41 9.289782 GAATAGTACTCCCTCCGTAAACTAATA 57.710 37.037 0.00 0.00 0.00 0.98
41 42 8.003629 AGAATAGTACTCCCTCCGTAAACTAAT 58.996 37.037 0.00 0.00 0.00 1.73
42 43 7.284034 CAGAATAGTACTCCCTCCGTAAACTAA 59.716 40.741 0.00 0.00 0.00 2.24
43 44 6.769822 CAGAATAGTACTCCCTCCGTAAACTA 59.230 42.308 0.00 0.00 0.00 2.24
44 45 5.593502 CAGAATAGTACTCCCTCCGTAAACT 59.406 44.000 0.00 0.00 0.00 2.66
45 46 5.735638 GCAGAATAGTACTCCCTCCGTAAAC 60.736 48.000 0.00 0.00 0.00 2.01
46 47 4.340381 GCAGAATAGTACTCCCTCCGTAAA 59.660 45.833 0.00 0.00 0.00 2.01
47 48 3.887716 GCAGAATAGTACTCCCTCCGTAA 59.112 47.826 0.00 0.00 0.00 3.18
48 49 3.137913 AGCAGAATAGTACTCCCTCCGTA 59.862 47.826 0.00 0.00 0.00 4.02
49 50 2.091775 AGCAGAATAGTACTCCCTCCGT 60.092 50.000 0.00 0.00 0.00 4.69
50 51 2.294791 CAGCAGAATAGTACTCCCTCCG 59.705 54.545 0.00 0.00 0.00 4.63
51 52 3.301274 ACAGCAGAATAGTACTCCCTCC 58.699 50.000 0.00 0.00 0.00 4.30
52 53 5.378332 TCTACAGCAGAATAGTACTCCCTC 58.622 45.833 0.00 0.00 0.00 4.30
53 54 5.390087 TCTACAGCAGAATAGTACTCCCT 57.610 43.478 0.00 0.00 0.00 4.20
54 55 6.658188 AATCTACAGCAGAATAGTACTCCC 57.342 41.667 0.00 0.00 36.67 4.30
55 56 7.175990 AGCTAATCTACAGCAGAATAGTACTCC 59.824 40.741 0.00 0.00 38.53 3.85
56 57 8.106247 AGCTAATCTACAGCAGAATAGTACTC 57.894 38.462 0.00 0.00 38.53 2.59
57 58 9.005777 GTAGCTAATCTACAGCAGAATAGTACT 57.994 37.037 0.00 0.00 45.47 2.73
136 137 4.106324 AGCCCAAAATGGAATGGAAGATT 58.894 39.130 0.00 0.00 40.96 2.40
139 140 2.169144 GGAGCCCAAAATGGAATGGAAG 59.831 50.000 0.00 0.00 40.96 3.46
165 166 6.377912 TCCAACCCAAGAAGGAAAAGATAAA 58.622 36.000 0.00 0.00 41.22 1.40
216 218 4.993028 TGGCCTTTCACCTGTTTTAGTAT 58.007 39.130 3.32 0.00 0.00 2.12
224 226 1.111277 GTTGTTGGCCTTTCACCTGT 58.889 50.000 3.32 0.00 0.00 4.00
234 236 1.616865 GTAAAGAAGGGGTTGTTGGCC 59.383 52.381 0.00 0.00 0.00 5.36
254 256 8.378172 TGTTTCCATCAAGAGTGTAGTAAAAG 57.622 34.615 0.00 0.00 0.00 2.27
262 264 5.305585 ACGTATTGTTTCCATCAAGAGTGT 58.694 37.500 0.00 0.00 0.00 3.55
269 271 7.634671 TCTACTAGACGTATTGTTTCCATCA 57.365 36.000 2.04 0.00 0.00 3.07
273 275 8.404000 TCATCTTCTACTAGACGTATTGTTTCC 58.596 37.037 2.04 0.00 0.00 3.13
280 282 5.927689 CGACCTCATCTTCTACTAGACGTAT 59.072 44.000 0.00 0.00 0.00 3.06
298 300 0.308993 GCATGCCATAAAGCGACCTC 59.691 55.000 6.36 0.00 34.65 3.85
302 304 2.495409 CATTGCATGCCATAAAGCGA 57.505 45.000 16.68 0.00 34.65 4.93
322 324 2.648059 GGAGAATGTCCATGAACCCTG 58.352 52.381 0.00 0.00 46.10 4.45
406 408 1.202758 TCTGTGGAGCAAATGGTCGTT 60.203 47.619 6.53 0.00 43.03 3.85
425 427 5.447010 CGTTGAGGCTGATTCTTCTTTCATC 60.447 44.000 0.00 0.00 0.00 2.92
429 431 3.744660 ACGTTGAGGCTGATTCTTCTTT 58.255 40.909 0.00 0.00 0.00 2.52
499 501 6.413892 AGTTCTTCTTCTTCTTCCATCCATC 58.586 40.000 0.00 0.00 0.00 3.51
518 520 8.982723 TGATTGATTACTTCCTAGCTAAGTTCT 58.017 33.333 12.34 3.24 38.18 3.01
519 521 9.771534 ATGATTGATTACTTCCTAGCTAAGTTC 57.228 33.333 12.34 7.23 38.18 3.01
561 563 1.351012 CAGCGGAGGAGTACGTACG 59.649 63.158 19.49 15.01 40.60 3.67
565 567 3.141488 AGCCAGCGGAGGAGTACG 61.141 66.667 0.00 0.00 0.00 3.67
566 568 2.496817 CAGCCAGCGGAGGAGTAC 59.503 66.667 0.00 0.00 0.00 2.73
567 569 2.759973 CCAGCCAGCGGAGGAGTA 60.760 66.667 0.00 0.00 0.00 2.59
577 579 2.045634 TAGCTTGCAGCCAGCCAG 60.046 61.111 14.78 0.00 43.77 4.85
578 580 1.552799 TACTAGCTTGCAGCCAGCCA 61.553 55.000 14.78 0.21 43.77 4.75
579 581 1.092345 GTACTAGCTTGCAGCCAGCC 61.092 60.000 14.78 0.00 43.77 4.85
580 582 0.107945 AGTACTAGCTTGCAGCCAGC 60.108 55.000 10.58 10.58 43.77 4.85
581 583 2.428890 ACTAGTACTAGCTTGCAGCCAG 59.571 50.000 26.54 4.72 43.77 4.85
582 584 2.427453 GACTAGTACTAGCTTGCAGCCA 59.573 50.000 26.54 0.00 43.77 4.75
583 585 2.691011 AGACTAGTACTAGCTTGCAGCC 59.309 50.000 26.54 8.37 43.77 4.85
584 586 3.378742 TCAGACTAGTACTAGCTTGCAGC 59.621 47.826 26.54 9.74 42.84 5.25
585 587 5.568685 TTCAGACTAGTACTAGCTTGCAG 57.431 43.478 26.54 13.60 36.66 4.41
586 588 5.243060 TGTTTCAGACTAGTACTAGCTTGCA 59.757 40.000 26.54 14.20 36.66 4.08
587 589 5.710984 TGTTTCAGACTAGTACTAGCTTGC 58.289 41.667 26.54 14.87 36.66 4.01
588 590 7.815068 ACATTGTTTCAGACTAGTACTAGCTTG 59.185 37.037 26.54 23.02 36.66 4.01
589 591 7.897864 ACATTGTTTCAGACTAGTACTAGCTT 58.102 34.615 26.54 14.03 36.66 3.74
590 592 7.469537 ACATTGTTTCAGACTAGTACTAGCT 57.530 36.000 26.54 20.92 36.66 3.32
591 593 7.813148 TCAACATTGTTTCAGACTAGTACTAGC 59.187 37.037 26.54 19.29 36.66 3.42
592 594 9.347934 CTCAACATTGTTTCAGACTAGTACTAG 57.652 37.037 25.30 25.30 39.04 2.57
593 595 9.074576 TCTCAACATTGTTTCAGACTAGTACTA 57.925 33.333 1.89 1.89 0.00 1.82
594 596 7.868415 GTCTCAACATTGTTTCAGACTAGTACT 59.132 37.037 21.20 0.00 30.22 2.73
595 597 7.868415 AGTCTCAACATTGTTTCAGACTAGTAC 59.132 37.037 25.90 9.86 37.08 2.73
596 598 7.867909 CAGTCTCAACATTGTTTCAGACTAGTA 59.132 37.037 26.26 1.52 36.87 1.82
597 599 6.703607 CAGTCTCAACATTGTTTCAGACTAGT 59.296 38.462 26.26 12.81 36.87 2.57
598 600 6.925718 TCAGTCTCAACATTGTTTCAGACTAG 59.074 38.462 26.26 21.84 36.87 2.57
599 601 6.816136 TCAGTCTCAACATTGTTTCAGACTA 58.184 36.000 26.26 17.64 36.87 2.59
600 602 5.674525 TCAGTCTCAACATTGTTTCAGACT 58.325 37.500 23.57 23.57 38.44 3.24
601 603 5.991328 TCAGTCTCAACATTGTTTCAGAC 57.009 39.130 21.06 21.06 31.92 3.51
602 604 6.994496 AGAATCAGTCTCAACATTGTTTCAGA 59.006 34.615 0.00 1.84 0.00 3.27
603 605 7.199541 AGAATCAGTCTCAACATTGTTTCAG 57.800 36.000 0.00 0.00 0.00 3.02
604 606 7.500227 AGAAGAATCAGTCTCAACATTGTTTCA 59.500 33.333 0.00 0.00 34.56 2.69
605 607 7.869800 AGAAGAATCAGTCTCAACATTGTTTC 58.130 34.615 0.00 0.00 34.56 2.78
606 608 7.814264 AGAAGAATCAGTCTCAACATTGTTT 57.186 32.000 0.00 0.00 34.56 2.83
607 609 7.040823 GGAAGAAGAATCAGTCTCAACATTGTT 60.041 37.037 0.00 0.00 34.56 2.83
608 610 6.429385 GGAAGAAGAATCAGTCTCAACATTGT 59.571 38.462 0.00 0.00 34.56 2.71
609 611 6.429078 TGGAAGAAGAATCAGTCTCAACATTG 59.571 38.462 0.00 0.00 34.56 2.82
610 612 6.537355 TGGAAGAAGAATCAGTCTCAACATT 58.463 36.000 0.00 0.00 34.56 2.71
611 613 6.119240 TGGAAGAAGAATCAGTCTCAACAT 57.881 37.500 0.00 0.00 34.56 2.71
612 614 5.551305 TGGAAGAAGAATCAGTCTCAACA 57.449 39.130 0.00 0.00 34.56 3.33
613 615 7.446001 AAATGGAAGAAGAATCAGTCTCAAC 57.554 36.000 0.00 0.00 34.56 3.18
614 616 7.040201 CCAAAATGGAAGAAGAATCAGTCTCAA 60.040 37.037 0.00 0.00 40.96 3.02
615 617 6.432162 CCAAAATGGAAGAAGAATCAGTCTCA 59.568 38.462 0.00 0.00 40.96 3.27
616 618 6.656693 TCCAAAATGGAAGAAGAATCAGTCTC 59.343 38.462 0.00 0.00 45.00 3.36
617 619 6.546484 TCCAAAATGGAAGAAGAATCAGTCT 58.454 36.000 0.00 0.00 45.00 3.24
618 620 6.824305 TCCAAAATGGAAGAAGAATCAGTC 57.176 37.500 0.00 0.00 45.00 3.51
632 634 3.367703 GCACTGAATCCACTCCAAAATGG 60.368 47.826 0.00 0.00 39.43 3.16
633 635 3.508793 AGCACTGAATCCACTCCAAAATG 59.491 43.478 0.00 0.00 0.00 2.32
634 636 3.760684 GAGCACTGAATCCACTCCAAAAT 59.239 43.478 0.00 0.00 0.00 1.82
635 637 3.149196 GAGCACTGAATCCACTCCAAAA 58.851 45.455 0.00 0.00 0.00 2.44
636 638 2.373169 AGAGCACTGAATCCACTCCAAA 59.627 45.455 0.00 0.00 0.00 3.28
637 639 1.980765 AGAGCACTGAATCCACTCCAA 59.019 47.619 0.00 0.00 0.00 3.53
638 640 1.552337 GAGAGCACTGAATCCACTCCA 59.448 52.381 0.00 0.00 0.00 3.86
639 641 1.552337 TGAGAGCACTGAATCCACTCC 59.448 52.381 0.00 0.00 0.00 3.85
640 642 3.118847 TCATGAGAGCACTGAATCCACTC 60.119 47.826 0.00 0.00 0.00 3.51
641 643 2.836372 TCATGAGAGCACTGAATCCACT 59.164 45.455 0.00 0.00 0.00 4.00
642 644 3.257469 TCATGAGAGCACTGAATCCAC 57.743 47.619 0.00 0.00 0.00 4.02
643 645 3.262660 ACTTCATGAGAGCACTGAATCCA 59.737 43.478 0.00 0.00 0.00 3.41
644 646 3.622163 CACTTCATGAGAGCACTGAATCC 59.378 47.826 0.00 0.00 0.00 3.01
645 647 3.063725 GCACTTCATGAGAGCACTGAATC 59.936 47.826 10.17 0.00 41.08 2.52
646 648 3.008330 GCACTTCATGAGAGCACTGAAT 58.992 45.455 10.17 0.00 41.08 2.57
647 649 2.224354 TGCACTTCATGAGAGCACTGAA 60.224 45.455 12.85 0.00 45.25 3.02
648 650 1.345415 TGCACTTCATGAGAGCACTGA 59.655 47.619 12.85 0.00 45.25 3.41
649 651 1.804601 TGCACTTCATGAGAGCACTG 58.195 50.000 12.85 3.42 45.25 3.66
653 655 6.798315 ATGTAATATGCACTTCATGAGAGC 57.202 37.500 8.61 8.61 41.68 4.09
680 682 9.859427 CCAATTGATCTGCACTTCTTATTAAAA 57.141 29.630 7.12 0.00 0.00 1.52
681 683 7.975616 GCCAATTGATCTGCACTTCTTATTAAA 59.024 33.333 7.12 0.00 0.00 1.52
682 684 7.340232 AGCCAATTGATCTGCACTTCTTATTAA 59.660 33.333 7.12 0.00 0.00 1.40
683 685 6.830324 AGCCAATTGATCTGCACTTCTTATTA 59.170 34.615 7.12 0.00 0.00 0.98
684 686 5.655532 AGCCAATTGATCTGCACTTCTTATT 59.344 36.000 7.12 0.00 0.00 1.40
685 687 5.198965 AGCCAATTGATCTGCACTTCTTAT 58.801 37.500 7.12 0.00 0.00 1.73
686 688 4.592942 AGCCAATTGATCTGCACTTCTTA 58.407 39.130 7.12 0.00 0.00 2.10
687 689 3.428532 AGCCAATTGATCTGCACTTCTT 58.571 40.909 7.12 0.00 0.00 2.52
688 690 3.083122 AGCCAATTGATCTGCACTTCT 57.917 42.857 7.12 0.00 0.00 2.85
689 691 3.944015 AGTAGCCAATTGATCTGCACTTC 59.056 43.478 7.12 0.00 0.00 3.01
690 692 3.960571 AGTAGCCAATTGATCTGCACTT 58.039 40.909 7.12 0.00 0.00 3.16
691 693 3.641434 AGTAGCCAATTGATCTGCACT 57.359 42.857 7.12 5.55 0.00 4.40
692 694 3.812053 CCTAGTAGCCAATTGATCTGCAC 59.188 47.826 7.12 3.49 0.00 4.57
693 695 3.455910 ACCTAGTAGCCAATTGATCTGCA 59.544 43.478 7.12 0.00 0.00 4.41
694 696 4.061596 GACCTAGTAGCCAATTGATCTGC 58.938 47.826 7.12 7.28 0.00 4.26
695 697 4.038042 TCGACCTAGTAGCCAATTGATCTG 59.962 45.833 7.12 0.00 0.00 2.90
696 698 4.215908 TCGACCTAGTAGCCAATTGATCT 58.784 43.478 7.12 6.23 0.00 2.75
697 699 4.038162 ACTCGACCTAGTAGCCAATTGATC 59.962 45.833 7.12 0.00 0.00 2.92
698 700 3.961408 ACTCGACCTAGTAGCCAATTGAT 59.039 43.478 7.12 0.00 0.00 2.57
699 701 3.362706 ACTCGACCTAGTAGCCAATTGA 58.637 45.455 7.12 0.00 0.00 2.57
700 702 3.802948 ACTCGACCTAGTAGCCAATTG 57.197 47.619 0.00 0.00 0.00 2.32
708 710 5.909621 AATTTGCACTACTCGACCTAGTA 57.090 39.130 0.00 0.00 0.00 1.82
709 711 4.803098 AATTTGCACTACTCGACCTAGT 57.197 40.909 0.00 0.00 0.00 2.57
710 712 5.892568 ACTAATTTGCACTACTCGACCTAG 58.107 41.667 0.00 0.00 0.00 3.02
711 713 5.416639 TGACTAATTTGCACTACTCGACCTA 59.583 40.000 0.00 0.00 0.00 3.08
712 714 4.219944 TGACTAATTTGCACTACTCGACCT 59.780 41.667 0.00 0.00 0.00 3.85
713 715 4.491676 TGACTAATTTGCACTACTCGACC 58.508 43.478 0.00 0.00 0.00 4.79
714 716 5.005779 CCATGACTAATTTGCACTACTCGAC 59.994 44.000 0.00 0.00 0.00 4.20
715 717 5.109210 CCATGACTAATTTGCACTACTCGA 58.891 41.667 0.00 0.00 0.00 4.04
716 718 4.870426 ACCATGACTAATTTGCACTACTCG 59.130 41.667 0.00 0.00 0.00 4.18
717 719 5.005779 CGACCATGACTAATTTGCACTACTC 59.994 44.000 0.00 0.00 0.00 2.59
718 720 4.870426 CGACCATGACTAATTTGCACTACT 59.130 41.667 0.00 0.00 0.00 2.57
719 721 4.034048 CCGACCATGACTAATTTGCACTAC 59.966 45.833 0.00 0.00 0.00 2.73
720 722 4.188462 CCGACCATGACTAATTTGCACTA 58.812 43.478 0.00 0.00 0.00 2.74
737 739 0.665369 ACATCGTTTCGTGACCGACC 60.665 55.000 0.00 0.00 44.13 4.79
808 810 2.443255 CCTATTAGCCCACTTGACCCAT 59.557 50.000 0.00 0.00 0.00 4.00
814 816 2.551071 GCTAGCCCTATTAGCCCACTTG 60.551 54.545 2.29 0.00 38.02 3.16
888 902 1.559682 TGGTTTAGTGGGCTCTCATCC 59.440 52.381 0.00 0.00 0.00 3.51
964 993 0.523968 GAGACCGCGCGTGTTGTATA 60.524 55.000 29.95 0.00 0.00 1.47
1001 1035 5.711976 TCTGGAAGAAACCCTTGATTGATTC 59.288 40.000 0.00 0.00 42.31 2.52
1028 1062 7.576750 TTGTTTGTAGTACGTGATGATCTTC 57.423 36.000 0.00 1.67 0.00 2.87
1029 1063 8.443160 CAATTGTTTGTAGTACGTGATGATCTT 58.557 33.333 0.00 0.00 0.00 2.40
1030 1064 7.413000 GCAATTGTTTGTAGTACGTGATGATCT 60.413 37.037 7.40 0.00 35.17 2.75
1031 1065 6.682863 GCAATTGTTTGTAGTACGTGATGATC 59.317 38.462 7.40 0.00 35.17 2.92
1032 1066 6.148645 TGCAATTGTTTGTAGTACGTGATGAT 59.851 34.615 7.40 0.00 35.17 2.45
1033 1067 5.467063 TGCAATTGTTTGTAGTACGTGATGA 59.533 36.000 7.40 0.00 35.17 2.92
1034 1068 5.684850 TGCAATTGTTTGTAGTACGTGATG 58.315 37.500 7.40 0.00 35.17 3.07
1035 1069 5.933187 TGCAATTGTTTGTAGTACGTGAT 57.067 34.783 7.40 0.00 35.17 3.06
1036 1070 5.736486 TTGCAATTGTTTGTAGTACGTGA 57.264 34.783 7.40 0.00 35.17 4.35
1037 1071 6.139435 TGATTGCAATTGTTTGTAGTACGTG 58.861 36.000 14.33 0.00 35.17 4.49
1038 1072 6.307031 TGATTGCAATTGTTTGTAGTACGT 57.693 33.333 14.33 0.00 35.17 3.57
1039 1073 7.589587 TCTTTGATTGCAATTGTTTGTAGTACG 59.410 33.333 14.33 0.00 35.17 3.67
1040 1074 8.795786 TCTTTGATTGCAATTGTTTGTAGTAC 57.204 30.769 14.33 0.00 35.17 2.73
1041 1075 9.462174 CTTCTTTGATTGCAATTGTTTGTAGTA 57.538 29.630 14.33 0.00 35.17 1.82
1042 1076 8.196771 TCTTCTTTGATTGCAATTGTTTGTAGT 58.803 29.630 14.33 0.00 35.17 2.73
1043 1077 8.578308 TCTTCTTTGATTGCAATTGTTTGTAG 57.422 30.769 14.33 6.66 35.17 2.74
1044 1078 9.195411 GATCTTCTTTGATTGCAATTGTTTGTA 57.805 29.630 14.33 0.00 35.17 2.41
1045 1079 7.711772 TGATCTTCTTTGATTGCAATTGTTTGT 59.288 29.630 14.33 0.00 35.17 2.83
1046 1080 8.078959 TGATCTTCTTTGATTGCAATTGTTTG 57.921 30.769 14.33 3.98 33.25 2.93
1047 1081 8.842358 ATGATCTTCTTTGATTGCAATTGTTT 57.158 26.923 14.33 0.00 33.25 2.83
1048 1082 8.092068 TGATGATCTTCTTTGATTGCAATTGTT 58.908 29.630 14.33 0.00 33.25 2.83
1049 1083 7.544566 GTGATGATCTTCTTTGATTGCAATTGT 59.455 33.333 14.33 0.00 33.25 2.71
1050 1084 7.253651 CGTGATGATCTTCTTTGATTGCAATTG 60.254 37.037 14.33 0.00 33.25 2.32
1051 1085 6.750501 CGTGATGATCTTCTTTGATTGCAATT 59.249 34.615 14.33 0.00 33.25 2.32
1052 1086 6.127814 ACGTGATGATCTTCTTTGATTGCAAT 60.128 34.615 12.83 12.83 33.25 3.56
1053 1087 5.181811 ACGTGATGATCTTCTTTGATTGCAA 59.818 36.000 0.00 0.00 0.00 4.08
1054 1088 4.696877 ACGTGATGATCTTCTTTGATTGCA 59.303 37.500 9.75 0.00 0.00 4.08
1055 1089 5.227238 ACGTGATGATCTTCTTTGATTGC 57.773 39.130 9.75 0.00 0.00 3.56
1056 1090 6.406018 CGTACGTGATGATCTTCTTTGATTG 58.594 40.000 7.22 0.00 0.00 2.67
1057 1091 5.520288 CCGTACGTGATGATCTTCTTTGATT 59.480 40.000 15.21 0.00 0.00 2.57
1058 1092 5.043903 CCGTACGTGATGATCTTCTTTGAT 58.956 41.667 15.21 0.00 0.00 2.57
1059 1093 4.082408 ACCGTACGTGATGATCTTCTTTGA 60.082 41.667 15.21 0.00 0.00 2.69
1060 1094 4.174009 ACCGTACGTGATGATCTTCTTTG 58.826 43.478 15.21 0.00 0.00 2.77
1061 1095 4.451629 ACCGTACGTGATGATCTTCTTT 57.548 40.909 15.21 0.00 0.00 2.52
1062 1096 4.036498 CCTACCGTACGTGATGATCTTCTT 59.964 45.833 15.21 0.00 0.00 2.52
1063 1097 3.564644 CCTACCGTACGTGATGATCTTCT 59.435 47.826 15.21 0.00 0.00 2.85
1319 1354 2.017138 TGTGCTCGTTGAAGTGAACA 57.983 45.000 0.00 0.00 0.00 3.18
1322 1357 2.309528 ACTTGTGCTCGTTGAAGTGA 57.690 45.000 0.00 0.00 0.00 3.41
1474 1536 1.446099 TTGCAGTGATCCTCGACGC 60.446 57.895 0.00 0.00 0.00 5.19
1476 1538 1.078759 CCGTTGCAGTGATCCTCGAC 61.079 60.000 0.00 0.00 0.00 4.20
1497 1559 5.758296 CACAGTTTTTACTGAGCAGGAGTAA 59.242 40.000 11.90 0.00 39.99 2.24
1503 1565 3.555956 ACGACACAGTTTTTACTGAGCAG 59.444 43.478 11.90 0.00 39.99 4.24
1511 1573 3.559242 CGGGGTTAACGACACAGTTTTTA 59.441 43.478 0.00 0.00 35.70 1.52
1705 1777 2.898729 TTCAGATTCCTCCATCGAGC 57.101 50.000 0.00 0.00 34.49 5.03
1781 1853 9.287373 AGGCATCATTCATGTTTTAAAAATGTT 57.713 25.926 7.62 0.00 34.56 2.71
1782 1854 8.851541 AGGCATCATTCATGTTTTAAAAATGT 57.148 26.923 7.62 0.00 34.56 2.71
1783 1855 8.392612 GGAGGCATCATTCATGTTTTAAAAATG 58.607 33.333 1.31 8.95 34.56 2.32
1784 1856 8.102047 TGGAGGCATCATTCATGTTTTAAAAAT 58.898 29.630 1.31 0.00 34.56 1.82
1785 1857 7.387397 GTGGAGGCATCATTCATGTTTTAAAAA 59.613 33.333 1.31 0.00 34.56 1.94
1786 1858 6.873076 GTGGAGGCATCATTCATGTTTTAAAA 59.127 34.615 0.00 0.00 34.56 1.52
1787 1859 6.014755 TGTGGAGGCATCATTCATGTTTTAAA 60.015 34.615 0.00 0.00 34.56 1.52
1788 1860 5.479724 TGTGGAGGCATCATTCATGTTTTAA 59.520 36.000 0.00 0.00 34.56 1.52
1789 1861 5.015515 TGTGGAGGCATCATTCATGTTTTA 58.984 37.500 0.00 0.00 34.56 1.52
1790 1862 3.833650 TGTGGAGGCATCATTCATGTTTT 59.166 39.130 0.00 0.00 34.56 2.43
1791 1863 3.433343 TGTGGAGGCATCATTCATGTTT 58.567 40.909 0.00 0.00 34.56 2.83
1792 1864 3.090210 TGTGGAGGCATCATTCATGTT 57.910 42.857 0.00 0.00 34.56 2.71
1793 1865 2.812836 TGTGGAGGCATCATTCATGT 57.187 45.000 0.00 0.00 34.56 3.21
1794 1866 4.459390 TTTTGTGGAGGCATCATTCATG 57.541 40.909 0.00 0.00 35.29 3.07
1795 1867 5.188163 TCAATTTTGTGGAGGCATCATTCAT 59.812 36.000 0.00 0.00 0.00 2.57
1796 1868 4.527427 TCAATTTTGTGGAGGCATCATTCA 59.473 37.500 0.00 0.00 0.00 2.57
1797 1869 5.075858 TCAATTTTGTGGAGGCATCATTC 57.924 39.130 0.00 0.00 0.00 2.67
1798 1870 5.687166 ATCAATTTTGTGGAGGCATCATT 57.313 34.783 0.00 0.00 0.00 2.57
1799 1871 5.687166 AATCAATTTTGTGGAGGCATCAT 57.313 34.783 0.00 0.00 0.00 2.45
1800 1872 5.486735 AAATCAATTTTGTGGAGGCATCA 57.513 34.783 0.00 0.00 0.00 3.07
1801 1873 6.401367 CGAAAAATCAATTTTGTGGAGGCATC 60.401 38.462 1.67 0.00 41.27 3.91
1802 1874 5.409214 CGAAAAATCAATTTTGTGGAGGCAT 59.591 36.000 1.67 0.00 41.27 4.40
1803 1875 4.749099 CGAAAAATCAATTTTGTGGAGGCA 59.251 37.500 1.67 0.00 41.27 4.75
1804 1876 4.749598 ACGAAAAATCAATTTTGTGGAGGC 59.250 37.500 1.67 0.00 41.27 4.70
1805 1877 6.843069 AACGAAAAATCAATTTTGTGGAGG 57.157 33.333 1.67 0.00 41.27 4.30
1806 1878 7.904094 TGAAACGAAAAATCAATTTTGTGGAG 58.096 30.769 1.67 0.00 41.27 3.86
1807 1879 7.834068 TGAAACGAAAAATCAATTTTGTGGA 57.166 28.000 1.67 0.00 41.27 4.02
1808 1880 8.886816 TTTGAAACGAAAAATCAATTTTGTGG 57.113 26.923 1.67 0.00 41.27 4.17
1832 1904 1.953686 CACACGGTCATCAGGGTTTTT 59.046 47.619 0.00 0.00 0.00 1.94
1833 1905 1.604604 CACACGGTCATCAGGGTTTT 58.395 50.000 0.00 0.00 0.00 2.43
1834 1906 0.250727 CCACACGGTCATCAGGGTTT 60.251 55.000 0.00 0.00 0.00 3.27
1835 1907 1.374947 CCACACGGTCATCAGGGTT 59.625 57.895 0.00 0.00 0.00 4.11
1836 1908 1.841556 ACCACACGGTCATCAGGGT 60.842 57.895 0.00 0.00 44.71 4.34
1837 1909 3.068881 ACCACACGGTCATCAGGG 58.931 61.111 0.00 0.00 44.71 4.45
1846 1918 6.094048 AGAGATGATCAATTTTAACCACACGG 59.906 38.462 0.00 0.00 38.77 4.94
1847 1919 7.076842 AGAGATGATCAATTTTAACCACACG 57.923 36.000 0.00 0.00 0.00 4.49
1848 1920 9.941664 CATAGAGATGATCAATTTTAACCACAC 57.058 33.333 0.00 0.00 34.73 3.82
1849 1921 9.123902 CCATAGAGATGATCAATTTTAACCACA 57.876 33.333 0.00 0.00 34.73 4.17
1850 1922 8.078596 GCCATAGAGATGATCAATTTTAACCAC 58.921 37.037 0.00 0.00 34.73 4.16
1851 1923 7.779326 TGCCATAGAGATGATCAATTTTAACCA 59.221 33.333 0.00 0.00 34.73 3.67
1852 1924 8.169977 TGCCATAGAGATGATCAATTTTAACC 57.830 34.615 0.00 0.00 34.73 2.85
1853 1925 9.060347 TCTGCCATAGAGATGATCAATTTTAAC 57.940 33.333 0.00 0.00 34.73 2.01
1854 1926 9.803507 ATCTGCCATAGAGATGATCAATTTTAA 57.196 29.630 0.00 0.00 39.20 1.52
1855 1927 9.227777 CATCTGCCATAGAGATGATCAATTTTA 57.772 33.333 0.00 0.00 46.73 1.52
1856 1928 7.176865 CCATCTGCCATAGAGATGATCAATTTT 59.823 37.037 11.50 0.00 46.73 1.82
1857 1929 6.659668 CCATCTGCCATAGAGATGATCAATTT 59.340 38.462 11.50 0.00 46.73 1.82
1858 1930 6.181190 CCATCTGCCATAGAGATGATCAATT 58.819 40.000 11.50 0.00 46.73 2.32
1859 1931 5.339282 CCCATCTGCCATAGAGATGATCAAT 60.339 44.000 11.50 0.00 46.73 2.57
1860 1932 4.019591 CCCATCTGCCATAGAGATGATCAA 60.020 45.833 11.50 0.00 46.73 2.57
1861 1933 3.518303 CCCATCTGCCATAGAGATGATCA 59.482 47.826 11.50 0.00 46.73 2.92
1862 1934 3.118334 CCCCATCTGCCATAGAGATGATC 60.118 52.174 11.50 0.00 46.73 2.92
1863 1935 2.844966 CCCCATCTGCCATAGAGATGAT 59.155 50.000 11.50 0.00 46.73 2.45
1864 1936 2.263545 CCCCATCTGCCATAGAGATGA 58.736 52.381 11.50 0.00 46.73 2.92
1865 1937 1.339824 GCCCCATCTGCCATAGAGATG 60.340 57.143 0.00 0.00 44.43 2.90
1866 1938 0.990374 GCCCCATCTGCCATAGAGAT 59.010 55.000 0.00 0.00 39.20 2.75
1867 1939 2.456627 GCCCCATCTGCCATAGAGA 58.543 57.895 0.00 0.00 39.20 3.10
1882 1954 4.222847 GATCTGACGACCGGGCCC 62.223 72.222 13.57 13.57 0.00 5.80
1883 1955 4.222847 GGATCTGACGACCGGGCC 62.223 72.222 6.32 0.00 0.00 5.80
1884 1956 3.458163 TGGATCTGACGACCGGGC 61.458 66.667 6.32 0.00 0.00 6.13
1885 1957 1.676678 ATGTGGATCTGACGACCGGG 61.677 60.000 6.32 0.00 0.00 5.73
1886 1958 0.528466 CATGTGGATCTGACGACCGG 60.528 60.000 0.00 0.00 0.00 5.28
1887 1959 0.528466 CCATGTGGATCTGACGACCG 60.528 60.000 0.00 0.00 37.39 4.79
1888 1960 0.811616 GCCATGTGGATCTGACGACC 60.812 60.000 2.55 0.00 37.39 4.79
1889 1961 0.108186 TGCCATGTGGATCTGACGAC 60.108 55.000 2.55 0.00 37.39 4.34
1890 1962 0.612744 TTGCCATGTGGATCTGACGA 59.387 50.000 2.55 0.00 37.39 4.20
1891 1963 0.729116 GTTGCCATGTGGATCTGACG 59.271 55.000 2.55 0.00 37.39 4.35
1892 1964 1.825090 TGTTGCCATGTGGATCTGAC 58.175 50.000 2.55 0.00 37.39 3.51
1893 1965 2.583024 TTGTTGCCATGTGGATCTGA 57.417 45.000 2.55 0.00 37.39 3.27
1894 1966 3.880047 ATTTGTTGCCATGTGGATCTG 57.120 42.857 2.55 0.00 37.39 2.90
1895 1967 6.488006 GTCTATATTTGTTGCCATGTGGATCT 59.512 38.462 2.55 0.00 37.39 2.75
1896 1968 6.488006 AGTCTATATTTGTTGCCATGTGGATC 59.512 38.462 2.55 0.00 37.39 3.36
1897 1969 6.367983 AGTCTATATTTGTTGCCATGTGGAT 58.632 36.000 2.55 0.00 37.39 3.41
1898 1970 5.754782 AGTCTATATTTGTTGCCATGTGGA 58.245 37.500 2.55 0.00 37.39 4.02
1899 1971 5.009010 GGAGTCTATATTTGTTGCCATGTGG 59.991 44.000 0.00 0.00 38.53 4.17
1900 1972 5.589855 TGGAGTCTATATTTGTTGCCATGTG 59.410 40.000 0.00 0.00 0.00 3.21
1901 1973 5.590259 GTGGAGTCTATATTTGTTGCCATGT 59.410 40.000 0.00 0.00 0.00 3.21
1902 1974 5.824624 AGTGGAGTCTATATTTGTTGCCATG 59.175 40.000 0.00 0.00 0.00 3.66
1903 1975 6.006275 AGTGGAGTCTATATTTGTTGCCAT 57.994 37.500 0.00 0.00 0.00 4.40
1904 1976 5.435686 AGTGGAGTCTATATTTGTTGCCA 57.564 39.130 0.00 0.00 0.00 4.92
1905 1977 6.583562 ACTAGTGGAGTCTATATTTGTTGCC 58.416 40.000 0.00 0.00 29.95 4.52
1919 1991 4.348168 ACTTCATGGTTTGACTAGTGGAGT 59.652 41.667 0.00 0.00 42.90 3.85
1920 1992 4.899502 ACTTCATGGTTTGACTAGTGGAG 58.100 43.478 0.00 0.00 32.84 3.86
1921 1993 4.346709 TGACTTCATGGTTTGACTAGTGGA 59.653 41.667 0.00 0.00 32.84 4.02
1922 1994 4.641396 TGACTTCATGGTTTGACTAGTGG 58.359 43.478 0.00 0.00 32.84 4.00
1923 1995 6.038161 TGTTTGACTTCATGGTTTGACTAGTG 59.962 38.462 0.00 0.00 32.84 2.74
1924 1996 6.119536 TGTTTGACTTCATGGTTTGACTAGT 58.880 36.000 0.00 0.00 32.84 2.57
1925 1997 6.483307 TCTGTTTGACTTCATGGTTTGACTAG 59.517 38.462 0.00 0.00 32.84 2.57
1926 1998 6.353323 TCTGTTTGACTTCATGGTTTGACTA 58.647 36.000 0.00 0.00 32.84 2.59
1927 1999 5.192927 TCTGTTTGACTTCATGGTTTGACT 58.807 37.500 0.00 0.00 32.84 3.41
1928 2000 5.499139 TCTGTTTGACTTCATGGTTTGAC 57.501 39.130 0.00 0.00 32.84 3.18
1929 2001 5.009911 CCATCTGTTTGACTTCATGGTTTGA 59.990 40.000 0.00 0.00 0.00 2.69
1930 2002 5.224888 CCATCTGTTTGACTTCATGGTTTG 58.775 41.667 0.00 0.00 0.00 2.93
1931 2003 4.262164 GCCATCTGTTTGACTTCATGGTTT 60.262 41.667 0.00 0.00 0.00 3.27
1932 2004 3.256631 GCCATCTGTTTGACTTCATGGTT 59.743 43.478 0.00 0.00 0.00 3.67
1933 2005 2.821969 GCCATCTGTTTGACTTCATGGT 59.178 45.455 0.00 0.00 0.00 3.55
1934 2006 2.165030 GGCCATCTGTTTGACTTCATGG 59.835 50.000 0.00 0.00 0.00 3.66
1935 2007 2.821378 TGGCCATCTGTTTGACTTCATG 59.179 45.455 0.00 0.00 0.00 3.07
1936 2008 3.159213 TGGCCATCTGTTTGACTTCAT 57.841 42.857 0.00 0.00 0.00 2.57
1937 2009 2.655090 TGGCCATCTGTTTGACTTCA 57.345 45.000 0.00 0.00 0.00 3.02
1938 2010 3.507233 TCAATGGCCATCTGTTTGACTTC 59.493 43.478 21.08 0.00 0.00 3.01
1939 2011 3.499338 TCAATGGCCATCTGTTTGACTT 58.501 40.909 21.08 0.00 0.00 3.01
1940 2012 3.087031 CTCAATGGCCATCTGTTTGACT 58.913 45.455 21.08 0.00 0.00 3.41
1941 2013 3.084039 TCTCAATGGCCATCTGTTTGAC 58.916 45.455 21.08 0.00 0.00 3.18
1942 2014 3.438216 TCTCAATGGCCATCTGTTTGA 57.562 42.857 21.08 18.01 0.00 2.69
1943 2015 5.008415 GTCTATCTCAATGGCCATCTGTTTG 59.992 44.000 21.08 14.37 0.00 2.93
1944 2016 5.128919 GTCTATCTCAATGGCCATCTGTTT 58.871 41.667 21.08 0.00 0.00 2.83
1945 2017 4.164796 TGTCTATCTCAATGGCCATCTGTT 59.835 41.667 21.08 0.00 0.00 3.16
1946 2018 3.713248 TGTCTATCTCAATGGCCATCTGT 59.287 43.478 21.08 0.00 0.00 3.41
1947 2019 4.316645 CTGTCTATCTCAATGGCCATCTG 58.683 47.826 21.08 18.56 0.00 2.90
1948 2020 3.327172 CCTGTCTATCTCAATGGCCATCT 59.673 47.826 21.08 6.65 0.00 2.90
1949 2021 3.072184 ACCTGTCTATCTCAATGGCCATC 59.928 47.826 21.08 3.25 0.00 3.51
1950 2022 3.051581 ACCTGTCTATCTCAATGGCCAT 58.948 45.455 14.09 14.09 0.00 4.40
1951 2023 2.171237 CACCTGTCTATCTCAATGGCCA 59.829 50.000 8.56 8.56 0.00 5.36
1952 2024 2.486191 CCACCTGTCTATCTCAATGGCC 60.486 54.545 0.00 0.00 0.00 5.36
1953 2025 2.486191 CCCACCTGTCTATCTCAATGGC 60.486 54.545 0.00 0.00 0.00 4.40
1954 2026 2.105477 CCCCACCTGTCTATCTCAATGG 59.895 54.545 0.00 0.00 0.00 3.16
1955 2027 2.486191 GCCCCACCTGTCTATCTCAATG 60.486 54.545 0.00 0.00 0.00 2.82
1956 2028 1.771255 GCCCCACCTGTCTATCTCAAT 59.229 52.381 0.00 0.00 0.00 2.57
1957 2029 1.204146 GCCCCACCTGTCTATCTCAA 58.796 55.000 0.00 0.00 0.00 3.02
1958 2030 0.691078 GGCCCCACCTGTCTATCTCA 60.691 60.000 0.00 0.00 34.51 3.27
1959 2031 1.411651 GGGCCCCACCTGTCTATCTC 61.412 65.000 12.23 0.00 39.10 2.75
1960 2032 1.384643 GGGCCCCACCTGTCTATCT 60.385 63.158 12.23 0.00 39.10 1.98
1961 2033 2.808206 CGGGCCCCACCTGTCTATC 61.808 68.421 18.66 0.00 40.35 2.08
1962 2034 2.768344 CGGGCCCCACCTGTCTAT 60.768 66.667 18.66 0.00 40.35 1.98
1975 2047 2.221906 TAAGAAGCTGACGACCGGGC 62.222 60.000 6.32 0.00 0.00 6.13
1976 2048 0.460311 ATAAGAAGCTGACGACCGGG 59.540 55.000 6.32 0.00 0.00 5.73
1977 2049 2.159226 AGAATAAGAAGCTGACGACCGG 60.159 50.000 0.00 0.00 0.00 5.28
1978 2050 3.109619 GAGAATAAGAAGCTGACGACCG 58.890 50.000 0.00 0.00 0.00 4.79
1979 2051 4.111375 TGAGAATAAGAAGCTGACGACC 57.889 45.455 0.00 0.00 0.00 4.79
1980 2052 7.367285 AGATATGAGAATAAGAAGCTGACGAC 58.633 38.462 0.00 0.00 0.00 4.34
1981 2053 7.446931 AGAGATATGAGAATAAGAAGCTGACGA 59.553 37.037 0.00 0.00 0.00 4.20
1982 2054 7.592938 AGAGATATGAGAATAAGAAGCTGACG 58.407 38.462 0.00 0.00 0.00 4.35
1983 2055 9.410556 GAAGAGATATGAGAATAAGAAGCTGAC 57.589 37.037 0.00 0.00 0.00 3.51
1984 2056 8.584157 GGAAGAGATATGAGAATAAGAAGCTGA 58.416 37.037 0.00 0.00 0.00 4.26
1985 2057 8.587608 AGGAAGAGATATGAGAATAAGAAGCTG 58.412 37.037 0.00 0.00 0.00 4.24
1986 2058 8.725606 AGGAAGAGATATGAGAATAAGAAGCT 57.274 34.615 0.00 0.00 0.00 3.74
1987 2059 8.806146 AGAGGAAGAGATATGAGAATAAGAAGC 58.194 37.037 0.00 0.00 0.00 3.86
1994 2066 9.438163 AGAGAAAAGAGGAAGAGATATGAGAAT 57.562 33.333 0.00 0.00 0.00 2.40
1995 2067 8.837099 AGAGAAAAGAGGAAGAGATATGAGAA 57.163 34.615 0.00 0.00 0.00 2.87
2001 2073 9.722317 AGGAAATAGAGAAAAGAGGAAGAGATA 57.278 33.333 0.00 0.00 0.00 1.98
2002 2074 8.622572 AGGAAATAGAGAAAAGAGGAAGAGAT 57.377 34.615 0.00 0.00 0.00 2.75
2003 2075 8.442660 AAGGAAATAGAGAAAAGAGGAAGAGA 57.557 34.615 0.00 0.00 0.00 3.10
2007 2079 9.892130 GTCATAAGGAAATAGAGAAAAGAGGAA 57.108 33.333 0.00 0.00 0.00 3.36
2008 2080 8.198109 CGTCATAAGGAAATAGAGAAAAGAGGA 58.802 37.037 0.00 0.00 0.00 3.71
2009 2081 8.198109 TCGTCATAAGGAAATAGAGAAAAGAGG 58.802 37.037 0.00 0.00 0.00 3.69
2010 2082 9.757227 ATCGTCATAAGGAAATAGAGAAAAGAG 57.243 33.333 0.00 0.00 0.00 2.85
2015 2087 9.982651 CCTTTATCGTCATAAGGAAATAGAGAA 57.017 33.333 0.00 0.00 0.00 2.87
2016 2088 8.585881 CCCTTTATCGTCATAAGGAAATAGAGA 58.414 37.037 0.00 0.00 0.00 3.10
2017 2089 8.368668 ACCCTTTATCGTCATAAGGAAATAGAG 58.631 37.037 0.00 0.00 0.00 2.43
2018 2090 8.258850 ACCCTTTATCGTCATAAGGAAATAGA 57.741 34.615 0.00 0.00 0.00 1.98
2019 2091 8.904099 AACCCTTTATCGTCATAAGGAAATAG 57.096 34.615 0.00 0.00 0.00 1.73
2020 2092 9.333724 GAAACCCTTTATCGTCATAAGGAAATA 57.666 33.333 0.00 0.00 0.00 1.40
2021 2093 7.284716 GGAAACCCTTTATCGTCATAAGGAAAT 59.715 37.037 0.00 0.00 0.00 2.17
2022 2094 6.600427 GGAAACCCTTTATCGTCATAAGGAAA 59.400 38.462 0.00 0.00 0.00 3.13
2023 2095 6.117488 GGAAACCCTTTATCGTCATAAGGAA 58.883 40.000 0.00 0.00 0.00 3.36
2024 2096 5.677567 GGAAACCCTTTATCGTCATAAGGA 58.322 41.667 0.00 0.00 0.00 3.36
2042 2114 7.310664 GCTTTATAATATAAAGCGGGGGAAAC 58.689 38.462 30.20 11.52 46.31 2.78
2043 2115 7.457024 GCTTTATAATATAAAGCGGGGGAAA 57.543 36.000 30.20 1.00 46.31 3.13
2058 2130 8.589338 TGTTGTATTGGGTTGTTGCTTTATAAT 58.411 29.630 0.00 0.00 0.00 1.28
2059 2131 7.952671 TGTTGTATTGGGTTGTTGCTTTATAA 58.047 30.769 0.00 0.00 0.00 0.98
2060 2132 7.526142 TGTTGTATTGGGTTGTTGCTTTATA 57.474 32.000 0.00 0.00 0.00 0.98
2061 2133 6.412362 TGTTGTATTGGGTTGTTGCTTTAT 57.588 33.333 0.00 0.00 0.00 1.40
2062 2134 5.854010 TGTTGTATTGGGTTGTTGCTTTA 57.146 34.783 0.00 0.00 0.00 1.85
2063 2135 4.744795 TGTTGTATTGGGTTGTTGCTTT 57.255 36.364 0.00 0.00 0.00 3.51
2064 2136 4.744795 TTGTTGTATTGGGTTGTTGCTT 57.255 36.364 0.00 0.00 0.00 3.91
2065 2137 4.161377 AGTTTGTTGTATTGGGTTGTTGCT 59.839 37.500 0.00 0.00 0.00 3.91
2066 2138 4.438148 AGTTTGTTGTATTGGGTTGTTGC 58.562 39.130 0.00 0.00 0.00 4.17
2067 2139 6.212955 CCTAGTTTGTTGTATTGGGTTGTTG 58.787 40.000 0.00 0.00 0.00 3.33
2068 2140 5.221362 GCCTAGTTTGTTGTATTGGGTTGTT 60.221 40.000 0.00 0.00 0.00 2.83
2069 2141 4.279922 GCCTAGTTTGTTGTATTGGGTTGT 59.720 41.667 0.00 0.00 0.00 3.32
2070 2142 4.614993 CGCCTAGTTTGTTGTATTGGGTTG 60.615 45.833 0.00 0.00 0.00 3.77
2071 2143 3.504520 CGCCTAGTTTGTTGTATTGGGTT 59.495 43.478 0.00 0.00 0.00 4.11
2072 2144 3.078837 CGCCTAGTTTGTTGTATTGGGT 58.921 45.455 0.00 0.00 0.00 4.51
2073 2145 3.340034 TCGCCTAGTTTGTTGTATTGGG 58.660 45.455 0.00 0.00 0.00 4.12
2074 2146 5.560966 AATCGCCTAGTTTGTTGTATTGG 57.439 39.130 0.00 0.00 0.00 3.16
2075 2147 9.567848 AATAAAATCGCCTAGTTTGTTGTATTG 57.432 29.630 0.00 0.00 27.35 1.90
2076 2148 9.567848 CAATAAAATCGCCTAGTTTGTTGTATT 57.432 29.630 7.50 0.00 38.59 1.89
2077 2149 8.952278 TCAATAAAATCGCCTAGTTTGTTGTAT 58.048 29.630 12.49 0.00 41.85 2.29
2078 2150 8.325421 TCAATAAAATCGCCTAGTTTGTTGTA 57.675 30.769 12.49 2.58 41.85 2.41
2079 2151 7.209471 TCAATAAAATCGCCTAGTTTGTTGT 57.791 32.000 12.49 0.00 41.85 3.32
2080 2152 9.950680 ATATCAATAAAATCGCCTAGTTTGTTG 57.049 29.630 8.74 8.74 42.25 3.33
2138 2215 5.643174 CGTTGTTGATTTTAGTTTGCGTTC 58.357 37.500 0.00 0.00 0.00 3.95
2153 2230 4.893601 TGGCGACGGCGTTGTTGA 62.894 61.111 26.64 9.66 41.24 3.18
2464 2622 0.889186 TTTGCTCCCCGTGAAGAAGC 60.889 55.000 0.00 0.00 0.00 3.86
2531 2698 4.473520 ATCAACGAGGGCGGCCAG 62.474 66.667 31.59 24.75 43.17 4.85
2646 2828 1.736645 CATCGTCGTTGTCGGGCTT 60.737 57.895 0.00 0.00 37.69 4.35
2862 3092 2.879462 GCGTACTTCGAGCGGTGG 60.879 66.667 0.00 0.00 42.86 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.