Multiple sequence alignment - TraesCS5D01G012600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G012600 chr5D 100.000 2549 0 0 1 2549 6910861 6908313 0.000000e+00 4708
1 TraesCS5D01G012600 chr5D 94.006 2002 73 14 581 2549 114516315 114518302 0.000000e+00 2988
2 TraesCS5D01G012600 chr5D 93.603 2001 76 19 572 2549 357075978 357074007 0.000000e+00 2939
3 TraesCS5D01G012600 chr5D 92.743 1998 76 30 579 2549 84221157 84219202 0.000000e+00 2822
4 TraesCS5D01G012600 chr5D 84.360 422 63 3 15 435 360549809 360549390 6.560000e-111 411
5 TraesCS5D01G012600 chr7D 94.281 2011 64 11 583 2549 90563634 90561631 0.000000e+00 3029
6 TraesCS5D01G012600 chr7D 93.299 1343 59 14 1233 2549 487833527 487832190 0.000000e+00 1953
7 TraesCS5D01G012600 chr7D 84.434 424 57 7 15 434 118868774 118868356 2.360000e-110 409
8 TraesCS5D01G012600 chr3D 93.616 2005 73 18 571 2549 573731184 573733159 0.000000e+00 2942
9 TraesCS5D01G012600 chr3D 93.127 2008 87 18 570 2549 546485986 546487970 0.000000e+00 2896
10 TraesCS5D01G012600 chr3D 91.985 1859 99 19 581 2403 370069643 370071487 0.000000e+00 2562
11 TraesCS5D01G012600 chr3D 86.076 395 49 6 18 409 516993072 516993463 1.090000e-113 420
12 TraesCS5D01G012600 chrUn 92.871 2006 77 22 581 2549 20573301 20575277 0.000000e+00 2852
13 TraesCS5D01G012600 chrUn 93.248 1955 76 21 624 2549 43407879 43409806 0.000000e+00 2828
14 TraesCS5D01G012600 chr1D 92.757 2002 87 19 581 2549 25464319 25466295 0.000000e+00 2841
15 TraesCS5D01G012600 chr1D 94.114 1733 68 14 578 2289 17040739 17039020 0.000000e+00 2604
16 TraesCS5D01G012600 chr6D 92.757 2002 76 22 583 2549 12108135 12106168 0.000000e+00 2830
17 TraesCS5D01G012600 chr6D 83.220 441 72 2 1 439 291218365 291218805 1.100000e-108 403
18 TraesCS5D01G012600 chr2D 92.624 1993 85 24 584 2549 84780830 84782787 0.000000e+00 2809
19 TraesCS5D01G012600 chr2D 94.895 333 11 2 581 913 16065486 16065812 1.350000e-142 516
20 TraesCS5D01G012600 chr2D 85.714 434 60 2 1 432 604074617 604075050 8.310000e-125 457
21 TraesCS5D01G012600 chr2D 83.447 441 69 4 1 438 638305373 638304934 8.490000e-110 407
22 TraesCS5D01G012600 chr3A 92.153 2039 83 20 581 2549 593512228 593514259 0.000000e+00 2808
23 TraesCS5D01G012600 chr3A 90.686 1997 109 35 581 2549 706125756 706123809 0.000000e+00 2586
24 TraesCS5D01G012600 chr3B 92.342 1998 98 25 579 2549 370213879 370215848 0.000000e+00 2791
25 TraesCS5D01G012600 chr2A 92.766 1728 71 19 578 2283 233255258 233256953 0.000000e+00 2449
26 TraesCS5D01G012600 chr2A 92.317 1731 76 21 581 2289 674415062 674413367 0.000000e+00 2407
27 TraesCS5D01G012600 chr2A 91.968 1743 87 31 574 2294 611725142 611723431 0.000000e+00 2394
28 TraesCS5D01G012600 chr2A 91.476 1748 84 23 580 2294 775967963 775966248 0.000000e+00 2342
29 TraesCS5D01G012600 chr2A 93.222 1136 53 14 580 1701 6302712 6301587 0.000000e+00 1650
30 TraesCS5D01G012600 chr1A 94.424 1381 61 12 906 2278 543258125 543259497 0.000000e+00 2109
31 TraesCS5D01G012600 chr1A 85.376 1901 170 55 580 2406 2863287 2861421 0.000000e+00 1871
32 TraesCS5D01G012600 chr5B 85.000 440 63 3 1 438 54508112 54507674 6.470000e-121 444
33 TraesCS5D01G012600 chr5B 84.198 424 60 5 15 435 34893434 34893015 3.050000e-109 405
34 TraesCS5D01G012600 chr4D 83.447 441 67 5 1 435 455753566 455753126 3.050000e-109 405


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G012600 chr5D 6908313 6910861 2548 True 4708 4708 100.000 1 2549 1 chr5D.!!$R1 2548
1 TraesCS5D01G012600 chr5D 114516315 114518302 1987 False 2988 2988 94.006 581 2549 1 chr5D.!!$F1 1968
2 TraesCS5D01G012600 chr5D 357074007 357075978 1971 True 2939 2939 93.603 572 2549 1 chr5D.!!$R3 1977
3 TraesCS5D01G012600 chr5D 84219202 84221157 1955 True 2822 2822 92.743 579 2549 1 chr5D.!!$R2 1970
4 TraesCS5D01G012600 chr7D 90561631 90563634 2003 True 3029 3029 94.281 583 2549 1 chr7D.!!$R1 1966
5 TraesCS5D01G012600 chr7D 487832190 487833527 1337 True 1953 1953 93.299 1233 2549 1 chr7D.!!$R3 1316
6 TraesCS5D01G012600 chr3D 573731184 573733159 1975 False 2942 2942 93.616 571 2549 1 chr3D.!!$F4 1978
7 TraesCS5D01G012600 chr3D 546485986 546487970 1984 False 2896 2896 93.127 570 2549 1 chr3D.!!$F3 1979
8 TraesCS5D01G012600 chr3D 370069643 370071487 1844 False 2562 2562 91.985 581 2403 1 chr3D.!!$F1 1822
9 TraesCS5D01G012600 chrUn 20573301 20575277 1976 False 2852 2852 92.871 581 2549 1 chrUn.!!$F1 1968
10 TraesCS5D01G012600 chrUn 43407879 43409806 1927 False 2828 2828 93.248 624 2549 1 chrUn.!!$F2 1925
11 TraesCS5D01G012600 chr1D 25464319 25466295 1976 False 2841 2841 92.757 581 2549 1 chr1D.!!$F1 1968
12 TraesCS5D01G012600 chr1D 17039020 17040739 1719 True 2604 2604 94.114 578 2289 1 chr1D.!!$R1 1711
13 TraesCS5D01G012600 chr6D 12106168 12108135 1967 True 2830 2830 92.757 583 2549 1 chr6D.!!$R1 1966
14 TraesCS5D01G012600 chr2D 84780830 84782787 1957 False 2809 2809 92.624 584 2549 1 chr2D.!!$F2 1965
15 TraesCS5D01G012600 chr3A 593512228 593514259 2031 False 2808 2808 92.153 581 2549 1 chr3A.!!$F1 1968
16 TraesCS5D01G012600 chr3A 706123809 706125756 1947 True 2586 2586 90.686 581 2549 1 chr3A.!!$R1 1968
17 TraesCS5D01G012600 chr3B 370213879 370215848 1969 False 2791 2791 92.342 579 2549 1 chr3B.!!$F1 1970
18 TraesCS5D01G012600 chr2A 233255258 233256953 1695 False 2449 2449 92.766 578 2283 1 chr2A.!!$F1 1705
19 TraesCS5D01G012600 chr2A 674413367 674415062 1695 True 2407 2407 92.317 581 2289 1 chr2A.!!$R3 1708
20 TraesCS5D01G012600 chr2A 611723431 611725142 1711 True 2394 2394 91.968 574 2294 1 chr2A.!!$R2 1720
21 TraesCS5D01G012600 chr2A 775966248 775967963 1715 True 2342 2342 91.476 580 2294 1 chr2A.!!$R4 1714
22 TraesCS5D01G012600 chr2A 6301587 6302712 1125 True 1650 1650 93.222 580 1701 1 chr2A.!!$R1 1121
23 TraesCS5D01G012600 chr1A 543258125 543259497 1372 False 2109 2109 94.424 906 2278 1 chr1A.!!$F1 1372
24 TraesCS5D01G012600 chr1A 2861421 2863287 1866 True 1871 1871 85.376 580 2406 1 chr1A.!!$R1 1826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.032815 GCCAGAGCTCCGTCTAATCC 59.967 60.0 10.93 0.0 35.50 3.01 F
365 366 0.036858 GGCATAGGAGAGGCGAATCC 60.037 60.0 0.00 0.0 34.98 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 1453 2.156917 CATGTCACCTGCATGAACACT 58.843 47.619 0.0 0.0 44.6 3.55 R
2335 2715 2.375014 ACGTTTCCAACCCTCCAAAT 57.625 45.000 0.0 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.282391 TCTTTGTGCGCATGCCCT 60.282 55.556 15.91 0.00 41.78 5.19
18 19 1.002746 TCTTTGTGCGCATGCCCTA 60.003 52.632 15.91 0.00 41.78 3.53
19 20 0.607762 TCTTTGTGCGCATGCCCTAA 60.608 50.000 15.91 2.64 41.78 2.69
20 21 0.179156 CTTTGTGCGCATGCCCTAAG 60.179 55.000 15.91 9.46 41.78 2.18
21 22 1.594194 TTTGTGCGCATGCCCTAAGG 61.594 55.000 15.91 0.00 41.78 2.69
22 23 2.124736 GTGCGCATGCCCTAAGGA 60.125 61.111 15.91 0.00 41.78 3.36
23 24 2.124736 TGCGCATGCCCTAAGGAC 60.125 61.111 13.15 0.00 41.78 3.85
24 25 2.902343 GCGCATGCCCTAAGGACC 60.902 66.667 13.15 0.00 33.47 4.46
25 26 2.589540 CGCATGCCCTAAGGACCA 59.410 61.111 13.15 0.00 33.47 4.02
26 27 1.524621 CGCATGCCCTAAGGACCAG 60.525 63.158 13.15 0.00 33.47 4.00
27 28 1.825622 GCATGCCCTAAGGACCAGC 60.826 63.158 6.36 0.00 33.47 4.85
28 29 1.918253 CATGCCCTAAGGACCAGCT 59.082 57.895 0.00 0.00 33.47 4.24
29 30 0.179034 CATGCCCTAAGGACCAGCTC 60.179 60.000 0.00 0.00 33.47 4.09
30 31 1.348775 ATGCCCTAAGGACCAGCTCC 61.349 60.000 0.00 0.00 39.81 4.70
31 32 2.747443 GCCCTAAGGACCAGCTCCC 61.747 68.421 0.00 0.00 40.53 4.30
32 33 2.073101 CCCTAAGGACCAGCTCCCC 61.073 68.421 0.00 0.00 40.53 4.81
33 34 2.435693 CCTAAGGACCAGCTCCCCG 61.436 68.421 0.00 0.00 40.53 5.73
34 35 2.365105 TAAGGACCAGCTCCCCGG 60.365 66.667 0.00 0.00 40.53 5.73
35 36 2.873557 CTAAGGACCAGCTCCCCGGA 62.874 65.000 0.73 0.00 40.53 5.14
36 37 2.873557 TAAGGACCAGCTCCCCGGAG 62.874 65.000 0.73 6.37 40.53 4.63
56 57 2.970324 GCAGCCGTGACCGTTGAA 60.970 61.111 0.00 0.00 0.00 2.69
57 58 2.325082 GCAGCCGTGACCGTTGAAT 61.325 57.895 0.00 0.00 0.00 2.57
58 59 1.852067 GCAGCCGTGACCGTTGAATT 61.852 55.000 0.00 0.00 0.00 2.17
59 60 0.165944 CAGCCGTGACCGTTGAATTC 59.834 55.000 0.00 0.00 0.00 2.17
60 61 0.034896 AGCCGTGACCGTTGAATTCT 59.965 50.000 7.05 0.00 0.00 2.40
61 62 0.872388 GCCGTGACCGTTGAATTCTT 59.128 50.000 7.05 0.00 0.00 2.52
62 63 1.399727 GCCGTGACCGTTGAATTCTTG 60.400 52.381 7.05 0.00 0.00 3.02
63 64 2.139917 CCGTGACCGTTGAATTCTTGA 58.860 47.619 7.05 0.00 0.00 3.02
64 65 2.546368 CCGTGACCGTTGAATTCTTGAA 59.454 45.455 7.05 0.00 0.00 2.69
65 66 3.188460 CCGTGACCGTTGAATTCTTGAAT 59.812 43.478 7.05 0.00 0.00 2.57
66 67 4.394795 CGTGACCGTTGAATTCTTGAATC 58.605 43.478 7.05 0.38 0.00 2.52
67 68 4.394795 GTGACCGTTGAATTCTTGAATCG 58.605 43.478 7.05 0.00 0.00 3.34
68 69 4.151689 GTGACCGTTGAATTCTTGAATCGA 59.848 41.667 7.05 0.00 0.00 3.59
69 70 4.935205 TGACCGTTGAATTCTTGAATCGAT 59.065 37.500 7.05 0.00 0.00 3.59
70 71 5.063438 TGACCGTTGAATTCTTGAATCGATC 59.937 40.000 7.05 0.00 0.00 3.69
71 72 5.178797 ACCGTTGAATTCTTGAATCGATCT 58.821 37.500 7.05 0.00 0.00 2.75
72 73 5.063944 ACCGTTGAATTCTTGAATCGATCTG 59.936 40.000 7.05 0.00 0.00 2.90
73 74 5.291858 CCGTTGAATTCTTGAATCGATCTGA 59.708 40.000 7.05 0.00 0.00 3.27
74 75 6.183360 CCGTTGAATTCTTGAATCGATCTGAA 60.183 38.462 7.05 1.77 0.00 3.02
75 76 6.898716 CGTTGAATTCTTGAATCGATCTGAAG 59.101 38.462 7.05 1.56 0.00 3.02
76 77 7.201470 CGTTGAATTCTTGAATCGATCTGAAGA 60.201 37.037 7.05 4.07 0.00 2.87
77 78 8.446273 GTTGAATTCTTGAATCGATCTGAAGAA 58.554 33.333 20.18 20.18 35.64 2.52
78 79 7.968246 TGAATTCTTGAATCGATCTGAAGAAC 58.032 34.615 20.26 13.33 34.64 3.01
79 80 7.821359 TGAATTCTTGAATCGATCTGAAGAACT 59.179 33.333 20.26 14.09 34.64 3.01
80 81 8.558973 AATTCTTGAATCGATCTGAAGAACTT 57.441 30.769 20.26 15.05 34.64 2.66
81 82 6.957984 TCTTGAATCGATCTGAAGAACTTG 57.042 37.500 0.00 0.00 0.00 3.16
82 83 6.691508 TCTTGAATCGATCTGAAGAACTTGA 58.308 36.000 0.00 0.00 0.00 3.02
83 84 7.154656 TCTTGAATCGATCTGAAGAACTTGAA 58.845 34.615 0.00 0.00 0.00 2.69
84 85 6.712241 TGAATCGATCTGAAGAACTTGAAC 57.288 37.500 0.00 0.00 0.00 3.18
85 86 5.639506 TGAATCGATCTGAAGAACTTGAACC 59.360 40.000 0.00 0.00 0.00 3.62
86 87 4.600692 TCGATCTGAAGAACTTGAACCA 57.399 40.909 0.00 0.00 0.00 3.67
87 88 4.956085 TCGATCTGAAGAACTTGAACCAA 58.044 39.130 0.00 0.00 0.00 3.67
88 89 5.364778 TCGATCTGAAGAACTTGAACCAAA 58.635 37.500 0.00 0.00 0.00 3.28
89 90 5.997746 TCGATCTGAAGAACTTGAACCAAAT 59.002 36.000 0.00 0.00 0.00 2.32
90 91 7.158697 TCGATCTGAAGAACTTGAACCAAATA 58.841 34.615 0.00 0.00 0.00 1.40
91 92 7.824289 TCGATCTGAAGAACTTGAACCAAATAT 59.176 33.333 0.00 0.00 0.00 1.28
92 93 8.119226 CGATCTGAAGAACTTGAACCAAATATC 58.881 37.037 0.00 0.00 0.00 1.63
93 94 8.868522 ATCTGAAGAACTTGAACCAAATATCA 57.131 30.769 0.00 0.00 0.00 2.15
94 95 8.099364 TCTGAAGAACTTGAACCAAATATCAC 57.901 34.615 0.00 0.00 0.00 3.06
95 96 7.174946 TCTGAAGAACTTGAACCAAATATCACC 59.825 37.037 0.00 0.00 0.00 4.02
96 97 7.004086 TGAAGAACTTGAACCAAATATCACCT 58.996 34.615 0.00 0.00 0.00 4.00
97 98 7.505585 TGAAGAACTTGAACCAAATATCACCTT 59.494 33.333 0.00 0.00 0.00 3.50
98 99 7.839680 AGAACTTGAACCAAATATCACCTTT 57.160 32.000 0.00 0.00 0.00 3.11
99 100 7.661040 AGAACTTGAACCAAATATCACCTTTG 58.339 34.615 0.00 0.00 34.17 2.77
100 101 5.783111 ACTTGAACCAAATATCACCTTTGC 58.217 37.500 0.00 0.00 33.27 3.68
101 102 4.433186 TGAACCAAATATCACCTTTGCG 57.567 40.909 0.00 0.00 33.27 4.85
102 103 3.823873 TGAACCAAATATCACCTTTGCGT 59.176 39.130 0.00 0.00 33.27 5.24
103 104 5.004448 TGAACCAAATATCACCTTTGCGTA 58.996 37.500 0.00 0.00 33.27 4.42
104 105 4.957759 ACCAAATATCACCTTTGCGTAC 57.042 40.909 0.00 0.00 33.27 3.67
105 106 4.328536 ACCAAATATCACCTTTGCGTACA 58.671 39.130 0.00 0.00 33.27 2.90
106 107 4.947388 ACCAAATATCACCTTTGCGTACAT 59.053 37.500 0.00 0.00 33.27 2.29
107 108 6.116806 ACCAAATATCACCTTTGCGTACATA 58.883 36.000 0.00 0.00 33.27 2.29
108 109 6.260050 ACCAAATATCACCTTTGCGTACATAG 59.740 38.462 0.00 0.00 33.27 2.23
110 111 5.801531 ATATCACCTTTGCGTACATAGGA 57.198 39.130 9.17 0.00 45.17 2.94
111 112 3.241067 TCACCTTTGCGTACATAGGAC 57.759 47.619 9.17 0.00 45.17 3.85
112 113 1.924524 CACCTTTGCGTACATAGGACG 59.075 52.381 9.17 0.00 45.17 4.79
113 114 1.820519 ACCTTTGCGTACATAGGACGA 59.179 47.619 5.87 0.00 45.17 4.20
114 115 2.159282 ACCTTTGCGTACATAGGACGAG 60.159 50.000 5.87 0.00 45.17 4.18
115 116 2.098607 CCTTTGCGTACATAGGACGAGA 59.901 50.000 5.87 0.00 45.17 4.04
116 117 3.428452 CCTTTGCGTACATAGGACGAGAA 60.428 47.826 5.87 0.00 45.17 2.87
117 118 3.853831 TTGCGTACATAGGACGAGAAA 57.146 42.857 5.87 0.00 42.98 2.52
118 119 4.380841 TTGCGTACATAGGACGAGAAAT 57.619 40.909 5.87 0.00 42.98 2.17
119 120 3.961182 TGCGTACATAGGACGAGAAATC 58.039 45.455 5.87 0.00 42.98 2.17
120 121 3.243301 TGCGTACATAGGACGAGAAATCC 60.243 47.826 5.87 0.00 42.98 3.01
128 129 2.688958 AGGACGAGAAATCCTAACCTCG 59.311 50.000 0.00 0.00 45.18 4.63
130 131 1.854227 CGAGAAATCCTAACCTCGCC 58.146 55.000 0.00 0.00 41.31 5.54
131 132 1.136305 CGAGAAATCCTAACCTCGCCA 59.864 52.381 0.00 0.00 41.31 5.69
132 133 2.552031 GAGAAATCCTAACCTCGCCAC 58.448 52.381 0.00 0.00 0.00 5.01
133 134 1.209747 AGAAATCCTAACCTCGCCACC 59.790 52.381 0.00 0.00 0.00 4.61
134 135 0.255033 AAATCCTAACCTCGCCACCC 59.745 55.000 0.00 0.00 0.00 4.61
135 136 1.632965 AATCCTAACCTCGCCACCCC 61.633 60.000 0.00 0.00 0.00 4.95
136 137 4.157120 CCTAACCTCGCCACCCCG 62.157 72.222 0.00 0.00 0.00 5.73
137 138 3.072468 CTAACCTCGCCACCCCGA 61.072 66.667 0.00 0.00 35.68 5.14
151 152 4.399395 CCGAGGAGCTGGCAGCAA 62.399 66.667 38.09 0.00 45.56 3.91
152 153 2.124819 CGAGGAGCTGGCAGCAAT 60.125 61.111 38.09 24.25 45.56 3.56
153 154 2.178890 CGAGGAGCTGGCAGCAATC 61.179 63.158 38.09 28.76 45.56 2.67
154 155 1.224039 GAGGAGCTGGCAGCAATCT 59.776 57.895 38.09 29.55 45.56 2.40
155 156 0.467384 GAGGAGCTGGCAGCAATCTA 59.533 55.000 38.09 0.00 45.56 1.98
156 157 0.179936 AGGAGCTGGCAGCAATCTAC 59.820 55.000 38.09 20.50 45.56 2.59
157 158 1.156645 GGAGCTGGCAGCAATCTACG 61.157 60.000 38.09 0.72 45.56 3.51
158 159 1.770085 GAGCTGGCAGCAATCTACGC 61.770 60.000 38.09 11.86 45.56 4.42
159 160 2.828128 GCTGGCAGCAATCTACGCC 61.828 63.158 33.33 0.00 41.89 5.68
161 162 3.414272 GGCAGCAATCTACGCCAG 58.586 61.111 0.00 0.00 44.25 4.85
162 163 1.153369 GGCAGCAATCTACGCCAGA 60.153 57.895 0.00 0.00 44.25 3.86
163 164 1.156645 GGCAGCAATCTACGCCAGAG 61.157 60.000 0.00 0.00 44.25 3.35
164 165 1.770085 GCAGCAATCTACGCCAGAGC 61.770 60.000 0.00 0.00 36.48 4.09
165 166 0.179089 CAGCAATCTACGCCAGAGCT 60.179 55.000 0.00 0.00 35.69 4.09
166 167 0.103937 AGCAATCTACGCCAGAGCTC 59.896 55.000 5.27 5.27 36.48 4.09
167 168 0.878086 GCAATCTACGCCAGAGCTCC 60.878 60.000 10.93 0.00 36.48 4.70
168 169 0.596083 CAATCTACGCCAGAGCTCCG 60.596 60.000 10.93 9.80 36.48 4.63
169 170 1.038130 AATCTACGCCAGAGCTCCGT 61.038 55.000 18.31 18.31 36.48 4.69
170 171 1.448922 ATCTACGCCAGAGCTCCGTC 61.449 60.000 17.89 3.54 36.48 4.79
171 172 2.045242 TACGCCAGAGCTCCGTCT 60.045 61.111 17.89 0.40 36.51 4.18
172 173 0.814410 CTACGCCAGAGCTCCGTCTA 60.814 60.000 17.89 3.59 36.51 2.59
173 174 0.393402 TACGCCAGAGCTCCGTCTAA 60.393 55.000 17.89 1.05 36.51 2.10
174 175 1.038130 ACGCCAGAGCTCCGTCTAAT 61.038 55.000 10.93 0.00 36.60 1.73
175 176 0.318275 CGCCAGAGCTCCGTCTAATC 60.318 60.000 10.93 0.00 36.60 1.75
176 177 0.032815 GCCAGAGCTCCGTCTAATCC 59.967 60.000 10.93 0.00 35.50 3.01
177 178 0.312416 CCAGAGCTCCGTCTAATCCG 59.688 60.000 10.93 0.00 0.00 4.18
178 179 1.025812 CAGAGCTCCGTCTAATCCGT 58.974 55.000 10.93 0.00 0.00 4.69
179 180 1.405821 CAGAGCTCCGTCTAATCCGTT 59.594 52.381 10.93 0.00 0.00 4.44
180 181 1.677052 AGAGCTCCGTCTAATCCGTTC 59.323 52.381 10.93 0.00 0.00 3.95
181 182 0.745468 AGCTCCGTCTAATCCGTTCC 59.255 55.000 0.00 0.00 0.00 3.62
182 183 0.458669 GCTCCGTCTAATCCGTTCCA 59.541 55.000 0.00 0.00 0.00 3.53
183 184 1.134907 GCTCCGTCTAATCCGTTCCAA 60.135 52.381 0.00 0.00 0.00 3.53
184 185 2.537401 CTCCGTCTAATCCGTTCCAAC 58.463 52.381 0.00 0.00 0.00 3.77
197 198 3.234596 GTTCCAACGAACGAACTTGAG 57.765 47.619 0.14 0.00 39.14 3.02
198 199 1.860676 TCCAACGAACGAACTTGAGG 58.139 50.000 0.14 0.00 0.00 3.86
199 200 1.409790 TCCAACGAACGAACTTGAGGA 59.590 47.619 0.14 0.00 0.00 3.71
200 201 1.792949 CCAACGAACGAACTTGAGGAG 59.207 52.381 0.14 0.00 0.00 3.69
201 202 1.792949 CAACGAACGAACTTGAGGAGG 59.207 52.381 0.14 0.00 0.00 4.30
202 203 0.317479 ACGAACGAACTTGAGGAGGG 59.683 55.000 0.14 0.00 0.00 4.30
203 204 0.317479 CGAACGAACTTGAGGAGGGT 59.683 55.000 0.00 0.00 0.00 4.34
204 205 1.669211 CGAACGAACTTGAGGAGGGTC 60.669 57.143 0.00 0.00 0.00 4.46
205 206 0.317479 AACGAACTTGAGGAGGGTCG 59.683 55.000 0.00 0.00 40.69 4.79
206 207 1.215647 CGAACTTGAGGAGGGTCGG 59.784 63.158 0.00 0.00 34.94 4.79
207 208 1.248785 CGAACTTGAGGAGGGTCGGA 61.249 60.000 0.00 0.00 34.94 4.55
208 209 0.533032 GAACTTGAGGAGGGTCGGAG 59.467 60.000 0.00 0.00 0.00 4.63
209 210 1.545706 AACTTGAGGAGGGTCGGAGC 61.546 60.000 0.00 0.00 0.00 4.70
210 211 2.683933 TTGAGGAGGGTCGGAGCC 60.684 66.667 18.33 18.33 35.59 4.70
222 223 2.436824 GGAGCCCGAAAGACTGCC 60.437 66.667 0.00 0.00 0.00 4.85
223 224 2.665603 GAGCCCGAAAGACTGCCT 59.334 61.111 0.00 0.00 0.00 4.75
224 225 1.448717 GAGCCCGAAAGACTGCCTC 60.449 63.158 0.00 0.00 0.00 4.70
225 226 2.815647 GCCCGAAAGACTGCCTCG 60.816 66.667 0.00 0.00 0.00 4.63
226 227 2.970639 CCCGAAAGACTGCCTCGA 59.029 61.111 4.01 0.00 34.52 4.04
227 228 1.292223 CCCGAAAGACTGCCTCGAA 59.708 57.895 4.01 0.00 34.52 3.71
228 229 0.737715 CCCGAAAGACTGCCTCGAAG 60.738 60.000 4.01 0.00 34.52 3.79
229 230 0.243907 CCGAAAGACTGCCTCGAAGA 59.756 55.000 4.01 0.00 34.52 2.87
230 231 1.336887 CCGAAAGACTGCCTCGAAGAA 60.337 52.381 4.01 0.00 34.09 2.52
231 232 1.989165 CGAAAGACTGCCTCGAAGAAG 59.011 52.381 0.00 0.00 34.09 2.85
232 233 2.351835 CGAAAGACTGCCTCGAAGAAGA 60.352 50.000 0.00 0.00 34.09 2.87
233 234 3.654414 GAAAGACTGCCTCGAAGAAGAA 58.346 45.455 0.00 0.00 34.09 2.52
234 235 2.734276 AGACTGCCTCGAAGAAGAAC 57.266 50.000 0.00 0.00 34.09 3.01
235 236 1.273886 AGACTGCCTCGAAGAAGAACC 59.726 52.381 0.00 0.00 34.09 3.62
236 237 0.038159 ACTGCCTCGAAGAAGAACCG 60.038 55.000 0.00 0.00 34.09 4.44
237 238 1.355066 CTGCCTCGAAGAAGAACCGC 61.355 60.000 0.00 0.00 34.09 5.68
238 239 2.101233 GCCTCGAAGAAGAACCGCC 61.101 63.158 0.00 0.00 34.09 6.13
239 240 1.292223 CCTCGAAGAAGAACCGCCA 59.708 57.895 0.00 0.00 34.09 5.69
240 241 1.014564 CCTCGAAGAAGAACCGCCAC 61.015 60.000 0.00 0.00 34.09 5.01
241 242 1.005394 TCGAAGAAGAACCGCCACC 60.005 57.895 0.00 0.00 0.00 4.61
242 243 1.301401 CGAAGAAGAACCGCCACCA 60.301 57.895 0.00 0.00 0.00 4.17
243 244 0.673644 CGAAGAAGAACCGCCACCAT 60.674 55.000 0.00 0.00 0.00 3.55
244 245 1.087501 GAAGAAGAACCGCCACCATC 58.912 55.000 0.00 0.00 0.00 3.51
245 246 0.673644 AAGAAGAACCGCCACCATCG 60.674 55.000 0.00 0.00 0.00 3.84
251 252 4.402528 CCGCCACCATCGGTCCAA 62.403 66.667 0.00 0.00 41.85 3.53
252 253 2.359354 CGCCACCATCGGTCCAAA 60.359 61.111 0.00 0.00 31.02 3.28
253 254 2.686816 CGCCACCATCGGTCCAAAC 61.687 63.158 0.00 0.00 31.02 2.93
254 255 2.686816 GCCACCATCGGTCCAAACG 61.687 63.158 0.00 0.00 31.02 3.60
255 256 1.302192 CCACCATCGGTCCAAACGT 60.302 57.895 0.00 0.00 31.02 3.99
256 257 1.296056 CCACCATCGGTCCAAACGTC 61.296 60.000 0.00 0.00 31.02 4.34
257 258 1.373748 ACCATCGGTCCAAACGTCG 60.374 57.895 0.00 0.00 0.00 5.12
258 259 2.736682 CCATCGGTCCAAACGTCGC 61.737 63.158 0.00 0.00 0.00 5.19
259 260 2.433664 ATCGGTCCAAACGTCGCC 60.434 61.111 0.00 0.00 0.00 5.54
260 261 3.945304 ATCGGTCCAAACGTCGCCC 62.945 63.158 0.00 0.00 0.00 6.13
261 262 4.973055 CGGTCCAAACGTCGCCCA 62.973 66.667 0.00 0.00 0.00 5.36
262 263 2.359478 GGTCCAAACGTCGCCCAT 60.359 61.111 0.00 0.00 0.00 4.00
263 264 2.686816 GGTCCAAACGTCGCCCATG 61.687 63.158 0.00 0.00 0.00 3.66
264 265 3.053291 TCCAAACGTCGCCCATGC 61.053 61.111 0.00 0.00 0.00 4.06
274 275 4.954933 GCCCATGCGAGGACTTAA 57.045 55.556 0.00 0.00 0.00 1.85
275 276 3.168773 GCCCATGCGAGGACTTAAA 57.831 52.632 0.00 0.00 0.00 1.52
276 277 0.733150 GCCCATGCGAGGACTTAAAC 59.267 55.000 0.00 0.00 0.00 2.01
277 278 1.379527 CCCATGCGAGGACTTAAACC 58.620 55.000 0.00 0.00 0.00 3.27
278 279 1.379527 CCATGCGAGGACTTAAACCC 58.620 55.000 0.00 0.00 0.00 4.11
279 280 1.065418 CCATGCGAGGACTTAAACCCT 60.065 52.381 0.00 0.00 35.02 4.34
280 281 2.169769 CCATGCGAGGACTTAAACCCTA 59.830 50.000 0.00 0.00 31.84 3.53
281 282 3.195661 CATGCGAGGACTTAAACCCTAC 58.804 50.000 0.00 0.00 31.84 3.18
282 283 1.551883 TGCGAGGACTTAAACCCTACC 59.448 52.381 0.00 0.00 31.84 3.18
283 284 1.551883 GCGAGGACTTAAACCCTACCA 59.448 52.381 0.00 0.00 31.84 3.25
284 285 2.027837 GCGAGGACTTAAACCCTACCAA 60.028 50.000 0.00 0.00 31.84 3.67
285 286 3.370209 GCGAGGACTTAAACCCTACCAAT 60.370 47.826 0.00 0.00 31.84 3.16
286 287 4.439968 CGAGGACTTAAACCCTACCAATC 58.560 47.826 0.00 0.00 31.84 2.67
287 288 4.161754 CGAGGACTTAAACCCTACCAATCT 59.838 45.833 0.00 0.00 31.84 2.40
288 289 5.361857 CGAGGACTTAAACCCTACCAATCTA 59.638 44.000 0.00 0.00 31.84 1.98
289 290 6.556974 AGGACTTAAACCCTACCAATCTAC 57.443 41.667 0.00 0.00 0.00 2.59
290 291 6.269974 AGGACTTAAACCCTACCAATCTACT 58.730 40.000 0.00 0.00 0.00 2.57
291 292 7.425003 AGGACTTAAACCCTACCAATCTACTA 58.575 38.462 0.00 0.00 0.00 1.82
292 293 7.564292 AGGACTTAAACCCTACCAATCTACTAG 59.436 40.741 0.00 0.00 0.00 2.57
293 294 7.122138 ACTTAAACCCTACCAATCTACTAGC 57.878 40.000 0.00 0.00 0.00 3.42
294 295 6.099413 ACTTAAACCCTACCAATCTACTAGCC 59.901 42.308 0.00 0.00 0.00 3.93
295 296 2.595238 ACCCTACCAATCTACTAGCCG 58.405 52.381 0.00 0.00 0.00 5.52
296 297 1.893801 CCCTACCAATCTACTAGCCGG 59.106 57.143 0.00 0.00 0.00 6.13
297 298 2.490351 CCCTACCAATCTACTAGCCGGA 60.490 54.545 5.05 0.00 0.00 5.14
298 299 3.432378 CCTACCAATCTACTAGCCGGAT 58.568 50.000 5.05 0.00 0.00 4.18
299 300 3.444388 CCTACCAATCTACTAGCCGGATC 59.556 52.174 5.05 0.00 0.00 3.36
300 301 3.246416 ACCAATCTACTAGCCGGATCT 57.754 47.619 5.05 0.00 0.00 2.75
301 302 2.894126 ACCAATCTACTAGCCGGATCTG 59.106 50.000 5.05 0.00 0.00 2.90
302 303 2.232452 CCAATCTACTAGCCGGATCTGG 59.768 54.545 16.98 16.98 0.00 3.86
303 304 2.223803 ATCTACTAGCCGGATCTGGG 57.776 55.000 22.38 10.62 0.00 4.45
304 305 0.112606 TCTACTAGCCGGATCTGGGG 59.887 60.000 22.38 8.07 0.00 4.96
320 321 4.666105 GGCACCAGAAATCCCCTC 57.334 61.111 0.00 0.00 0.00 4.30
321 322 1.076705 GGCACCAGAAATCCCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
322 323 1.076705 GCACCAGAAATCCCCTCCC 60.077 63.158 0.00 0.00 0.00 4.30
323 324 1.615262 CACCAGAAATCCCCTCCCC 59.385 63.158 0.00 0.00 0.00 4.81
324 325 2.001269 ACCAGAAATCCCCTCCCCG 61.001 63.158 0.00 0.00 0.00 5.73
325 326 2.193248 CAGAAATCCCCTCCCCGC 59.807 66.667 0.00 0.00 0.00 6.13
326 327 3.097162 AGAAATCCCCTCCCCGCC 61.097 66.667 0.00 0.00 0.00 6.13
327 328 3.416880 GAAATCCCCTCCCCGCCA 61.417 66.667 0.00 0.00 0.00 5.69
328 329 3.716204 GAAATCCCCTCCCCGCCAC 62.716 68.421 0.00 0.00 0.00 5.01
357 358 2.030262 GCGGCAGGCATAGGAGAG 59.970 66.667 0.00 0.00 42.87 3.20
358 359 2.739784 CGGCAGGCATAGGAGAGG 59.260 66.667 0.00 0.00 0.00 3.69
359 360 2.429494 GGCAGGCATAGGAGAGGC 59.571 66.667 0.00 0.00 0.00 4.70
360 361 2.030262 GCAGGCATAGGAGAGGCG 59.970 66.667 0.00 0.00 34.98 5.52
361 362 2.502492 GCAGGCATAGGAGAGGCGA 61.502 63.158 0.00 0.00 34.98 5.54
362 363 2.032860 GCAGGCATAGGAGAGGCGAA 62.033 60.000 0.00 0.00 34.98 4.70
363 364 0.683973 CAGGCATAGGAGAGGCGAAT 59.316 55.000 0.00 0.00 34.98 3.34
364 365 0.972883 AGGCATAGGAGAGGCGAATC 59.027 55.000 0.00 0.00 34.98 2.52
365 366 0.036858 GGCATAGGAGAGGCGAATCC 60.037 60.000 0.00 0.00 34.98 3.01
366 367 0.681733 GCATAGGAGAGGCGAATCCA 59.318 55.000 8.13 0.00 38.12 3.41
367 368 1.606737 GCATAGGAGAGGCGAATCCAC 60.607 57.143 8.13 0.00 38.12 4.02
368 369 0.962489 ATAGGAGAGGCGAATCCACG 59.038 55.000 8.13 0.00 38.12 4.94
369 370 1.107538 TAGGAGAGGCGAATCCACGG 61.108 60.000 8.13 0.00 38.12 4.94
370 371 2.107141 GAGAGGCGAATCCACGGG 59.893 66.667 0.00 0.00 37.29 5.28
371 372 4.162690 AGAGGCGAATCCACGGGC 62.163 66.667 0.00 0.00 37.29 6.13
372 373 4.162690 GAGGCGAATCCACGGGCT 62.163 66.667 0.00 0.00 39.50 5.19
373 374 4.162690 AGGCGAATCCACGGGCTC 62.163 66.667 0.00 0.00 37.29 4.70
386 387 4.593864 GGCTCGCCGGTGGAGATC 62.594 72.222 23.50 13.12 33.27 2.75
387 388 4.933064 GCTCGCCGGTGGAGATCG 62.933 72.222 23.50 8.71 33.27 3.69
388 389 3.209812 CTCGCCGGTGGAGATCGA 61.210 66.667 16.49 6.53 33.27 3.59
389 390 3.187699 CTCGCCGGTGGAGATCGAG 62.188 68.421 16.49 12.91 40.22 4.04
390 391 4.271816 CGCCGGTGGAGATCGAGG 62.272 72.222 7.26 0.00 0.00 4.63
391 392 3.917760 GCCGGTGGAGATCGAGGG 61.918 72.222 1.90 0.00 0.00 4.30
392 393 2.123854 CCGGTGGAGATCGAGGGA 60.124 66.667 0.00 0.00 0.00 4.20
393 394 1.756950 CCGGTGGAGATCGAGGGAA 60.757 63.158 0.00 0.00 0.00 3.97
394 395 1.736586 CGGTGGAGATCGAGGGAAG 59.263 63.158 0.00 0.00 0.00 3.46
395 396 1.739338 CGGTGGAGATCGAGGGAAGG 61.739 65.000 0.00 0.00 0.00 3.46
396 397 0.397254 GGTGGAGATCGAGGGAAGGA 60.397 60.000 0.00 0.00 0.00 3.36
397 398 1.486211 GTGGAGATCGAGGGAAGGAA 58.514 55.000 0.00 0.00 0.00 3.36
398 399 1.410882 GTGGAGATCGAGGGAAGGAAG 59.589 57.143 0.00 0.00 0.00 3.46
399 400 1.288037 TGGAGATCGAGGGAAGGAAGA 59.712 52.381 0.00 0.00 0.00 2.87
400 401 1.684450 GGAGATCGAGGGAAGGAAGAC 59.316 57.143 0.00 0.00 0.00 3.01
401 402 2.661718 GAGATCGAGGGAAGGAAGACT 58.338 52.381 0.00 0.00 0.00 3.24
402 403 3.028130 GAGATCGAGGGAAGGAAGACTT 58.972 50.000 0.00 0.00 43.65 3.01
403 404 3.445987 AGATCGAGGGAAGGAAGACTTT 58.554 45.455 0.00 0.00 40.21 2.66
404 405 3.449377 AGATCGAGGGAAGGAAGACTTTC 59.551 47.826 0.00 0.00 40.21 2.62
405 406 2.605257 TCGAGGGAAGGAAGACTTTCA 58.395 47.619 0.00 0.00 40.21 2.69
406 407 2.299297 TCGAGGGAAGGAAGACTTTCAC 59.701 50.000 0.00 0.00 40.21 3.18
407 408 2.300437 CGAGGGAAGGAAGACTTTCACT 59.700 50.000 0.00 0.00 46.09 3.41
408 409 3.510360 CGAGGGAAGGAAGACTTTCACTA 59.490 47.826 0.00 0.00 44.04 2.74
409 410 4.381079 CGAGGGAAGGAAGACTTTCACTAG 60.381 50.000 0.00 0.00 44.04 2.57
410 411 4.494591 AGGGAAGGAAGACTTTCACTAGT 58.505 43.478 0.00 0.00 42.61 2.57
411 412 4.528987 AGGGAAGGAAGACTTTCACTAGTC 59.471 45.833 0.00 0.00 42.61 2.59
412 413 8.499324 GAGGGAAGGAAGACTTTCACTAGTCG 62.499 50.000 0.00 0.00 44.04 4.18
415 416 5.536983 AAGGAAGACTTTCACTAGTCGCCT 61.537 45.833 12.38 12.38 46.88 5.52
418 419 2.608268 GACTTTCACTAGTCGCCTTCC 58.392 52.381 0.00 0.00 35.62 3.46
419 420 1.067776 ACTTTCACTAGTCGCCTTCCG 60.068 52.381 0.00 0.00 38.61 4.30
420 421 1.201647 CTTTCACTAGTCGCCTTCCGA 59.798 52.381 0.00 0.00 45.15 4.55
441 442 6.819397 CGAGAGGGGAAAGAAAAACTTAAT 57.181 37.500 0.00 0.00 37.93 1.40
442 443 6.612306 CGAGAGGGGAAAGAAAAACTTAATG 58.388 40.000 0.00 0.00 37.93 1.90
443 444 6.430000 CGAGAGGGGAAAGAAAAACTTAATGA 59.570 38.462 0.00 0.00 37.93 2.57
444 445 7.121315 CGAGAGGGGAAAGAAAAACTTAATGAT 59.879 37.037 0.00 0.00 37.93 2.45
445 446 8.727100 AGAGGGGAAAGAAAAACTTAATGATT 57.273 30.769 0.00 0.00 37.93 2.57
446 447 9.159254 AGAGGGGAAAGAAAAACTTAATGATTT 57.841 29.630 0.00 0.00 37.93 2.17
447 448 9.208022 GAGGGGAAAGAAAAACTTAATGATTTG 57.792 33.333 0.00 0.00 37.93 2.32
448 449 8.933653 AGGGGAAAGAAAAACTTAATGATTTGA 58.066 29.630 0.00 0.00 37.93 2.69
449 450 8.988934 GGGGAAAGAAAAACTTAATGATTTGAC 58.011 33.333 0.00 0.00 37.93 3.18
450 451 8.699749 GGGAAAGAAAAACTTAATGATTTGACG 58.300 33.333 0.00 0.00 37.93 4.35
451 452 9.458374 GGAAAGAAAAACTTAATGATTTGACGA 57.542 29.630 0.00 0.00 37.93 4.20
463 464 5.944049 TGATTTGACGACTATTAACTCGC 57.056 39.130 0.00 0.00 32.98 5.03
464 465 5.404096 TGATTTGACGACTATTAACTCGCA 58.596 37.500 0.00 0.00 32.98 5.10
465 466 6.040247 TGATTTGACGACTATTAACTCGCAT 58.960 36.000 0.00 0.00 32.98 4.73
466 467 7.197703 TGATTTGACGACTATTAACTCGCATA 58.802 34.615 0.00 0.00 32.98 3.14
467 468 7.703197 TGATTTGACGACTATTAACTCGCATAA 59.297 33.333 0.00 0.00 32.98 1.90
468 469 7.815398 TTTGACGACTATTAACTCGCATAAA 57.185 32.000 0.00 0.00 32.98 1.40
469 470 7.815398 TTGACGACTATTAACTCGCATAAAA 57.185 32.000 0.00 0.00 32.98 1.52
470 471 7.997107 TGACGACTATTAACTCGCATAAAAT 57.003 32.000 0.00 0.00 32.98 1.82
471 472 8.415192 TGACGACTATTAACTCGCATAAAATT 57.585 30.769 0.00 0.00 32.98 1.82
472 473 8.875803 TGACGACTATTAACTCGCATAAAATTT 58.124 29.630 0.00 0.00 32.98 1.82
473 474 9.144085 GACGACTATTAACTCGCATAAAATTTG 57.856 33.333 0.00 0.00 32.98 2.32
474 475 8.662141 ACGACTATTAACTCGCATAAAATTTGT 58.338 29.630 0.00 0.00 32.98 2.83
475 476 8.933955 CGACTATTAACTCGCATAAAATTTGTG 58.066 33.333 0.00 0.00 0.00 3.33
476 477 9.982291 GACTATTAACTCGCATAAAATTTGTGA 57.018 29.630 6.65 0.79 32.96 3.58
517 518 9.807649 AAATTTCCTGATGAATATTAGTTGTGC 57.192 29.630 0.00 0.00 31.67 4.57
518 519 7.936496 TTTCCTGATGAATATTAGTTGTGCA 57.064 32.000 0.00 0.00 31.67 4.57
519 520 6.925610 TCCTGATGAATATTAGTTGTGCAC 57.074 37.500 10.75 10.75 0.00 4.57
520 521 6.413892 TCCTGATGAATATTAGTTGTGCACA 58.586 36.000 17.42 17.42 0.00 4.57
521 522 6.883756 TCCTGATGAATATTAGTTGTGCACAA 59.116 34.615 27.96 27.96 0.00 3.33
522 523 7.066163 TCCTGATGAATATTAGTTGTGCACAAG 59.934 37.037 31.81 14.64 36.39 3.16
523 524 6.554419 TGATGAATATTAGTTGTGCACAAGC 58.446 36.000 31.81 24.05 42.57 4.01
539 540 6.662414 GCACAAGCACTTAACTACATATCA 57.338 37.500 0.00 0.00 41.58 2.15
540 541 6.478588 GCACAAGCACTTAACTACATATCAC 58.521 40.000 0.00 0.00 41.58 3.06
541 542 6.456988 GCACAAGCACTTAACTACATATCACC 60.457 42.308 0.00 0.00 41.58 4.02
542 543 6.037172 CACAAGCACTTAACTACATATCACCC 59.963 42.308 0.00 0.00 0.00 4.61
543 544 5.950544 AGCACTTAACTACATATCACCCA 57.049 39.130 0.00 0.00 0.00 4.51
544 545 6.500589 AGCACTTAACTACATATCACCCAT 57.499 37.500 0.00 0.00 0.00 4.00
545 546 7.612065 AGCACTTAACTACATATCACCCATA 57.388 36.000 0.00 0.00 0.00 2.74
546 547 8.207350 AGCACTTAACTACATATCACCCATAT 57.793 34.615 0.00 0.00 0.00 1.78
606 607 6.154534 GGTTAATTATCCTTTTGCCCTCAGTT 59.845 38.462 5.46 0.00 0.00 3.16
743 744 3.490851 GCCCTTACAGGTGGGACA 58.509 61.111 1.75 0.00 46.15 4.02
991 1217 0.253327 GTTGAGATCCCCTTCGGCTT 59.747 55.000 0.00 0.00 0.00 4.35
1270 1496 3.140325 TCTTTCTTTGGGTCGATGCTT 57.860 42.857 0.00 0.00 0.00 3.91
1419 1645 0.179097 AGCTAGCCGTTGAGCTTAGC 60.179 55.000 12.13 0.00 46.99 3.09
1527 1756 5.741982 GGTAATCGCATTGGTTGTAATGTTC 59.258 40.000 0.00 0.00 39.62 3.18
1664 1922 9.827411 GAGAAGAAGTGACCAACATTTAAATAC 57.173 33.333 0.00 0.00 0.00 1.89
1849 2131 2.032071 CGGGGGTTCTCTTGCGTT 59.968 61.111 0.00 0.00 0.00 4.84
2335 2715 6.293680 GGTTTTCCTTTGTTTTGCACTGAAAA 60.294 34.615 0.00 0.00 36.94 2.29
2371 2774 0.874390 CGTATGTTTGCACTGCCACT 59.126 50.000 0.00 0.00 0.00 4.00
2469 2896 7.434897 TGCATGTTAGTTCATGACTTGTTTTTC 59.565 33.333 10.28 0.00 45.41 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.124736 TCCTTAGGGCATGCGCAC 60.125 61.111 33.01 16.41 44.31 5.34
7 8 2.902343 GGTCCTTAGGGCATGCGC 60.902 66.667 26.04 26.04 37.44 6.09
8 9 1.524621 CTGGTCCTTAGGGCATGCG 60.525 63.158 12.44 0.00 0.00 4.73
9 10 1.825622 GCTGGTCCTTAGGGCATGC 60.826 63.158 9.90 9.90 0.00 4.06
10 11 0.179034 GAGCTGGTCCTTAGGGCATG 60.179 60.000 4.86 0.00 0.00 4.06
11 12 1.348775 GGAGCTGGTCCTTAGGGCAT 61.349 60.000 18.30 0.00 42.99 4.40
12 13 1.995626 GGAGCTGGTCCTTAGGGCA 60.996 63.158 18.30 0.00 42.99 5.36
13 14 2.747443 GGGAGCTGGTCCTTAGGGC 61.747 68.421 23.77 0.00 46.06 5.19
14 15 2.073101 GGGGAGCTGGTCCTTAGGG 61.073 68.421 23.77 0.00 46.06 3.53
15 16 2.435693 CGGGGAGCTGGTCCTTAGG 61.436 68.421 23.77 8.38 46.06 2.69
16 17 2.435693 CCGGGGAGCTGGTCCTTAG 61.436 68.421 23.77 15.04 46.06 2.18
17 18 2.365105 CCGGGGAGCTGGTCCTTA 60.365 66.667 23.77 0.00 46.06 2.69
18 19 4.332543 TCCGGGGAGCTGGTCCTT 62.333 66.667 23.77 0.00 46.06 3.36
19 20 4.787280 CTCCGGGGAGCTGGTCCT 62.787 72.222 23.77 0.00 46.06 3.85
39 40 1.852067 AATTCAACGGTCACGGCTGC 61.852 55.000 0.00 0.00 46.48 5.25
40 41 0.165944 GAATTCAACGGTCACGGCTG 59.834 55.000 0.00 0.00 46.48 4.85
41 42 0.034896 AGAATTCAACGGTCACGGCT 59.965 50.000 8.44 0.00 46.48 5.52
42 43 0.872388 AAGAATTCAACGGTCACGGC 59.128 50.000 8.44 0.00 46.48 5.68
43 44 2.139917 TCAAGAATTCAACGGTCACGG 58.860 47.619 8.44 0.00 46.48 4.94
45 46 4.151689 TCGATTCAAGAATTCAACGGTCAC 59.848 41.667 8.44 0.00 0.00 3.67
46 47 4.311606 TCGATTCAAGAATTCAACGGTCA 58.688 39.130 8.44 0.00 0.00 4.02
47 48 4.921470 TCGATTCAAGAATTCAACGGTC 57.079 40.909 8.44 0.00 0.00 4.79
48 49 5.063944 CAGATCGATTCAAGAATTCAACGGT 59.936 40.000 8.44 0.33 0.00 4.83
49 50 5.291858 TCAGATCGATTCAAGAATTCAACGG 59.708 40.000 8.44 0.00 0.00 4.44
50 51 6.336514 TCAGATCGATTCAAGAATTCAACG 57.663 37.500 8.44 4.28 0.00 4.10
51 52 7.968246 TCTTCAGATCGATTCAAGAATTCAAC 58.032 34.615 8.44 0.00 0.00 3.18
52 53 8.446273 GTTCTTCAGATCGATTCAAGAATTCAA 58.554 33.333 21.00 0.00 35.94 2.69
53 54 7.821359 AGTTCTTCAGATCGATTCAAGAATTCA 59.179 33.333 21.00 5.75 35.94 2.57
54 55 8.195617 AGTTCTTCAGATCGATTCAAGAATTC 57.804 34.615 21.00 13.78 35.94 2.17
55 56 8.449397 CAAGTTCTTCAGATCGATTCAAGAATT 58.551 33.333 21.00 16.91 35.94 2.17
56 57 7.821359 TCAAGTTCTTCAGATCGATTCAAGAAT 59.179 33.333 21.00 10.45 35.94 2.40
57 58 7.154656 TCAAGTTCTTCAGATCGATTCAAGAA 58.845 34.615 17.08 17.08 32.03 2.52
58 59 6.691508 TCAAGTTCTTCAGATCGATTCAAGA 58.308 36.000 0.00 5.02 0.00 3.02
59 60 6.957984 TCAAGTTCTTCAGATCGATTCAAG 57.042 37.500 0.00 2.58 0.00 3.02
60 61 6.147821 GGTTCAAGTTCTTCAGATCGATTCAA 59.852 38.462 0.00 0.00 0.00 2.69
61 62 5.639506 GGTTCAAGTTCTTCAGATCGATTCA 59.360 40.000 0.00 0.00 0.00 2.57
62 63 5.639506 TGGTTCAAGTTCTTCAGATCGATTC 59.360 40.000 0.00 0.00 0.00 2.52
63 64 5.551233 TGGTTCAAGTTCTTCAGATCGATT 58.449 37.500 0.00 0.00 0.00 3.34
64 65 5.152623 TGGTTCAAGTTCTTCAGATCGAT 57.847 39.130 0.00 0.00 0.00 3.59
65 66 4.600692 TGGTTCAAGTTCTTCAGATCGA 57.399 40.909 0.00 0.00 0.00 3.59
66 67 5.673337 TTTGGTTCAAGTTCTTCAGATCG 57.327 39.130 0.00 0.00 0.00 3.69
67 68 8.950210 TGATATTTGGTTCAAGTTCTTCAGATC 58.050 33.333 0.00 0.00 0.00 2.75
68 69 8.734386 GTGATATTTGGTTCAAGTTCTTCAGAT 58.266 33.333 0.00 0.00 0.00 2.90
69 70 7.174946 GGTGATATTTGGTTCAAGTTCTTCAGA 59.825 37.037 0.00 0.00 0.00 3.27
70 71 7.175641 AGGTGATATTTGGTTCAAGTTCTTCAG 59.824 37.037 0.00 0.00 0.00 3.02
71 72 7.004086 AGGTGATATTTGGTTCAAGTTCTTCA 58.996 34.615 0.00 0.00 0.00 3.02
72 73 7.454260 AGGTGATATTTGGTTCAAGTTCTTC 57.546 36.000 0.00 0.00 0.00 2.87
73 74 7.839680 AAGGTGATATTTGGTTCAAGTTCTT 57.160 32.000 0.00 0.00 0.00 2.52
74 75 7.661040 CAAAGGTGATATTTGGTTCAAGTTCT 58.339 34.615 0.00 0.00 34.66 3.01
75 76 6.366061 GCAAAGGTGATATTTGGTTCAAGTTC 59.634 38.462 1.12 0.00 37.96 3.01
76 77 6.223120 GCAAAGGTGATATTTGGTTCAAGTT 58.777 36.000 1.12 0.00 37.96 2.66
77 78 5.564651 CGCAAAGGTGATATTTGGTTCAAGT 60.565 40.000 1.12 0.00 37.96 3.16
78 79 4.858692 CGCAAAGGTGATATTTGGTTCAAG 59.141 41.667 1.12 0.00 37.96 3.02
79 80 4.279671 ACGCAAAGGTGATATTTGGTTCAA 59.720 37.500 1.12 0.00 37.96 2.69
80 81 3.823873 ACGCAAAGGTGATATTTGGTTCA 59.176 39.130 1.12 0.00 37.96 3.18
81 82 4.434713 ACGCAAAGGTGATATTTGGTTC 57.565 40.909 1.12 0.00 37.96 3.62
82 83 4.762765 TGTACGCAAAGGTGATATTTGGTT 59.237 37.500 1.12 0.00 37.96 3.67
83 84 4.328536 TGTACGCAAAGGTGATATTTGGT 58.671 39.130 1.12 0.84 37.96 3.67
84 85 4.955925 TGTACGCAAAGGTGATATTTGG 57.044 40.909 1.12 0.00 37.96 3.28
85 86 6.481976 TCCTATGTACGCAAAGGTGATATTTG 59.518 38.462 0.00 0.00 39.99 2.32
86 87 6.482308 GTCCTATGTACGCAAAGGTGATATTT 59.518 38.462 3.45 0.00 0.00 1.40
87 88 5.989777 GTCCTATGTACGCAAAGGTGATATT 59.010 40.000 3.45 0.00 0.00 1.28
88 89 5.539048 GTCCTATGTACGCAAAGGTGATAT 58.461 41.667 3.45 0.00 0.00 1.63
89 90 4.498513 CGTCCTATGTACGCAAAGGTGATA 60.499 45.833 3.45 0.00 33.04 2.15
90 91 3.737047 CGTCCTATGTACGCAAAGGTGAT 60.737 47.826 3.45 0.00 33.04 3.06
91 92 2.416296 CGTCCTATGTACGCAAAGGTGA 60.416 50.000 3.45 0.00 33.04 4.02
92 93 1.924524 CGTCCTATGTACGCAAAGGTG 59.075 52.381 3.45 0.00 33.04 4.00
93 94 1.820519 TCGTCCTATGTACGCAAAGGT 59.179 47.619 0.00 0.00 40.12 3.50
94 95 2.098607 TCTCGTCCTATGTACGCAAAGG 59.901 50.000 0.00 0.00 40.12 3.11
95 96 3.416119 TCTCGTCCTATGTACGCAAAG 57.584 47.619 0.00 0.00 40.12 2.77
96 97 3.853831 TTCTCGTCCTATGTACGCAAA 57.146 42.857 0.00 0.00 40.12 3.68
97 98 3.853831 TTTCTCGTCCTATGTACGCAA 57.146 42.857 0.00 0.00 40.12 4.85
98 99 3.243301 GGATTTCTCGTCCTATGTACGCA 60.243 47.826 0.00 0.00 40.12 5.24
99 100 3.004524 AGGATTTCTCGTCCTATGTACGC 59.995 47.826 0.00 0.00 44.17 4.42
100 101 4.832590 AGGATTTCTCGTCCTATGTACG 57.167 45.455 0.00 0.00 44.17 3.67
101 102 6.264970 AGGTTAGGATTTCTCGTCCTATGTAC 59.735 42.308 2.97 0.00 45.27 2.90
102 103 6.371278 AGGTTAGGATTTCTCGTCCTATGTA 58.629 40.000 2.97 0.00 45.27 2.29
103 104 5.209659 AGGTTAGGATTTCTCGTCCTATGT 58.790 41.667 2.97 0.00 45.27 2.29
104 105 5.563085 CGAGGTTAGGATTTCTCGTCCTATG 60.563 48.000 2.97 0.00 45.27 2.23
105 106 4.519730 CGAGGTTAGGATTTCTCGTCCTAT 59.480 45.833 2.97 0.00 45.27 2.57
106 107 3.881688 CGAGGTTAGGATTTCTCGTCCTA 59.118 47.826 0.00 0.00 44.17 2.94
108 109 3.081329 CGAGGTTAGGATTTCTCGTCC 57.919 52.381 0.00 0.00 42.61 4.79
112 113 2.552031 GTGGCGAGGTTAGGATTTCTC 58.448 52.381 0.00 0.00 0.00 2.87
113 114 1.209747 GGTGGCGAGGTTAGGATTTCT 59.790 52.381 0.00 0.00 0.00 2.52
114 115 1.664873 GGTGGCGAGGTTAGGATTTC 58.335 55.000 0.00 0.00 0.00 2.17
115 116 0.255033 GGGTGGCGAGGTTAGGATTT 59.745 55.000 0.00 0.00 0.00 2.17
116 117 1.632965 GGGGTGGCGAGGTTAGGATT 61.633 60.000 0.00 0.00 0.00 3.01
117 118 2.070650 GGGGTGGCGAGGTTAGGAT 61.071 63.158 0.00 0.00 0.00 3.24
118 119 2.686106 GGGGTGGCGAGGTTAGGA 60.686 66.667 0.00 0.00 0.00 2.94
119 120 4.157120 CGGGGTGGCGAGGTTAGG 62.157 72.222 0.00 0.00 0.00 2.69
120 121 3.072468 TCGGGGTGGCGAGGTTAG 61.072 66.667 0.00 0.00 0.00 2.34
121 122 3.072468 CTCGGGGTGGCGAGGTTA 61.072 66.667 0.00 0.00 0.00 2.85
134 135 3.694058 ATTGCTGCCAGCTCCTCGG 62.694 63.158 18.96 0.00 42.97 4.63
135 136 2.124819 ATTGCTGCCAGCTCCTCG 60.125 61.111 18.96 0.00 42.97 4.63
136 137 0.467384 TAGATTGCTGCCAGCTCCTC 59.533 55.000 18.96 11.36 42.97 3.71
137 138 0.179936 GTAGATTGCTGCCAGCTCCT 59.820 55.000 18.96 13.65 42.97 3.69
138 139 1.156645 CGTAGATTGCTGCCAGCTCC 61.157 60.000 18.96 6.83 42.97 4.70
139 140 1.770085 GCGTAGATTGCTGCCAGCTC 61.770 60.000 18.96 8.08 42.97 4.09
140 141 1.817099 GCGTAGATTGCTGCCAGCT 60.817 57.895 18.96 0.00 42.97 4.24
141 142 2.711924 GCGTAGATTGCTGCCAGC 59.288 61.111 10.45 10.45 42.82 4.85
142 143 3.414272 GGCGTAGATTGCTGCCAG 58.586 61.111 0.00 0.00 46.76 4.85
145 146 1.770085 GCTCTGGCGTAGATTGCTGC 61.770 60.000 0.00 0.00 34.21 5.25
146 147 0.179089 AGCTCTGGCGTAGATTGCTG 60.179 55.000 5.29 0.00 44.37 4.41
147 148 0.103937 GAGCTCTGGCGTAGATTGCT 59.896 55.000 6.43 5.64 44.37 3.91
148 149 0.878086 GGAGCTCTGGCGTAGATTGC 60.878 60.000 14.64 0.00 44.37 3.56
149 150 0.596083 CGGAGCTCTGGCGTAGATTG 60.596 60.000 15.27 0.00 44.37 2.67
150 151 1.038130 ACGGAGCTCTGGCGTAGATT 61.038 55.000 26.07 0.00 44.37 2.40
151 152 1.448922 GACGGAGCTCTGGCGTAGAT 61.449 60.000 26.07 3.24 44.37 1.98
152 153 2.045242 ACGGAGCTCTGGCGTAGA 60.045 61.111 26.07 0.00 44.37 2.59
153 154 0.814410 TAGACGGAGCTCTGGCGTAG 60.814 60.000 26.07 6.09 44.37 3.51
154 155 0.393402 TTAGACGGAGCTCTGGCGTA 60.393 55.000 26.07 13.91 44.37 4.42
155 156 1.038130 ATTAGACGGAGCTCTGGCGT 61.038 55.000 26.07 20.40 44.37 5.68
156 157 0.318275 GATTAGACGGAGCTCTGGCG 60.318 60.000 26.07 17.31 44.37 5.69
157 158 0.032815 GGATTAGACGGAGCTCTGGC 59.967 60.000 26.07 24.08 39.06 4.85
158 159 0.312416 CGGATTAGACGGAGCTCTGG 59.688 60.000 26.07 14.75 0.00 3.86
159 160 1.025812 ACGGATTAGACGGAGCTCTG 58.974 55.000 21.32 21.32 35.23 3.35
160 161 1.677052 GAACGGATTAGACGGAGCTCT 59.323 52.381 14.64 0.00 35.23 4.09
161 162 1.269154 GGAACGGATTAGACGGAGCTC 60.269 57.143 4.71 4.71 35.23 4.09
162 163 0.745468 GGAACGGATTAGACGGAGCT 59.255 55.000 0.00 0.00 35.23 4.09
163 164 0.458669 TGGAACGGATTAGACGGAGC 59.541 55.000 0.00 0.00 35.23 4.70
164 165 2.537401 GTTGGAACGGATTAGACGGAG 58.463 52.381 0.00 0.00 35.23 4.63
165 166 2.660189 GTTGGAACGGATTAGACGGA 57.340 50.000 0.00 0.00 35.23 4.69
178 179 2.159071 TCCTCAAGTTCGTTCGTTGGAA 60.159 45.455 0.00 0.00 0.00 3.53
179 180 1.409790 TCCTCAAGTTCGTTCGTTGGA 59.590 47.619 0.00 0.00 0.00 3.53
180 181 1.792949 CTCCTCAAGTTCGTTCGTTGG 59.207 52.381 0.00 0.00 0.00 3.77
181 182 1.792949 CCTCCTCAAGTTCGTTCGTTG 59.207 52.381 0.00 0.00 0.00 4.10
182 183 1.270147 CCCTCCTCAAGTTCGTTCGTT 60.270 52.381 0.00 0.00 0.00 3.85
183 184 0.317479 CCCTCCTCAAGTTCGTTCGT 59.683 55.000 0.00 0.00 0.00 3.85
184 185 0.317479 ACCCTCCTCAAGTTCGTTCG 59.683 55.000 0.00 0.00 0.00 3.95
185 186 1.669211 CGACCCTCCTCAAGTTCGTTC 60.669 57.143 0.00 0.00 0.00 3.95
186 187 0.317479 CGACCCTCCTCAAGTTCGTT 59.683 55.000 0.00 0.00 0.00 3.85
187 188 1.533469 CCGACCCTCCTCAAGTTCGT 61.533 60.000 0.00 0.00 30.34 3.85
188 189 1.215647 CCGACCCTCCTCAAGTTCG 59.784 63.158 0.00 0.00 0.00 3.95
189 190 0.533032 CTCCGACCCTCCTCAAGTTC 59.467 60.000 0.00 0.00 0.00 3.01
190 191 1.545706 GCTCCGACCCTCCTCAAGTT 61.546 60.000 0.00 0.00 0.00 2.66
191 192 1.985116 GCTCCGACCCTCCTCAAGT 60.985 63.158 0.00 0.00 0.00 3.16
192 193 2.726351 GGCTCCGACCCTCCTCAAG 61.726 68.421 0.00 0.00 0.00 3.02
193 194 2.683933 GGCTCCGACCCTCCTCAA 60.684 66.667 0.00 0.00 0.00 3.02
205 206 2.436824 GGCAGTCTTTCGGGCTCC 60.437 66.667 0.00 0.00 34.39 4.70
206 207 2.665603 AGGCAGTCTTTCGGGCTC 59.334 61.111 0.00 0.00 42.56 4.70
208 209 2.781595 TTCGAGGCAGTCTTTCGGGC 62.782 60.000 0.00 0.00 35.21 6.13
209 210 0.737715 CTTCGAGGCAGTCTTTCGGG 60.738 60.000 0.00 0.00 35.21 5.14
210 211 0.243907 TCTTCGAGGCAGTCTTTCGG 59.756 55.000 0.00 0.00 35.21 4.30
211 212 1.989165 CTTCTTCGAGGCAGTCTTTCG 59.011 52.381 0.00 0.00 35.76 3.46
212 213 3.305398 TCTTCTTCGAGGCAGTCTTTC 57.695 47.619 0.00 0.00 0.00 2.62
213 214 3.394719 GTTCTTCTTCGAGGCAGTCTTT 58.605 45.455 0.00 0.00 0.00 2.52
214 215 2.289133 GGTTCTTCTTCGAGGCAGTCTT 60.289 50.000 0.00 0.00 0.00 3.01
215 216 1.273886 GGTTCTTCTTCGAGGCAGTCT 59.726 52.381 0.00 0.00 0.00 3.24
216 217 1.715993 GGTTCTTCTTCGAGGCAGTC 58.284 55.000 0.00 0.00 0.00 3.51
217 218 0.038159 CGGTTCTTCTTCGAGGCAGT 60.038 55.000 0.00 0.00 0.00 4.40
218 219 1.355066 GCGGTTCTTCTTCGAGGCAG 61.355 60.000 0.00 0.00 0.00 4.85
219 220 1.374252 GCGGTTCTTCTTCGAGGCA 60.374 57.895 0.00 0.00 0.00 4.75
220 221 2.101233 GGCGGTTCTTCTTCGAGGC 61.101 63.158 0.00 0.00 0.00 4.70
221 222 1.014564 GTGGCGGTTCTTCTTCGAGG 61.015 60.000 0.00 0.00 0.00 4.63
222 223 1.014564 GGTGGCGGTTCTTCTTCGAG 61.015 60.000 0.00 0.00 0.00 4.04
223 224 1.005394 GGTGGCGGTTCTTCTTCGA 60.005 57.895 0.00 0.00 0.00 3.71
224 225 0.673644 ATGGTGGCGGTTCTTCTTCG 60.674 55.000 0.00 0.00 0.00 3.79
225 226 1.087501 GATGGTGGCGGTTCTTCTTC 58.912 55.000 0.00 0.00 0.00 2.87
226 227 0.673644 CGATGGTGGCGGTTCTTCTT 60.674 55.000 0.00 0.00 0.00 2.52
227 228 1.079127 CGATGGTGGCGGTTCTTCT 60.079 57.895 0.00 0.00 0.00 2.85
228 229 2.106683 CCGATGGTGGCGGTTCTTC 61.107 63.158 0.00 0.00 43.66 2.87
229 230 2.046314 CCGATGGTGGCGGTTCTT 60.046 61.111 0.00 0.00 43.66 2.52
235 236 2.359354 TTTGGACCGATGGTGGCG 60.359 61.111 0.00 0.00 35.25 5.69
236 237 2.686816 CGTTTGGACCGATGGTGGC 61.687 63.158 0.00 0.00 35.25 5.01
237 238 1.296056 GACGTTTGGACCGATGGTGG 61.296 60.000 0.00 0.00 35.25 4.61
238 239 1.623081 CGACGTTTGGACCGATGGTG 61.623 60.000 0.00 0.00 35.25 4.17
239 240 1.373748 CGACGTTTGGACCGATGGT 60.374 57.895 0.00 0.00 39.44 3.55
240 241 2.736682 GCGACGTTTGGACCGATGG 61.737 63.158 0.00 0.00 0.00 3.51
241 242 2.736682 GGCGACGTTTGGACCGATG 61.737 63.158 0.00 0.00 0.00 3.84
242 243 2.433664 GGCGACGTTTGGACCGAT 60.434 61.111 0.00 0.00 0.00 4.18
243 244 4.668118 GGGCGACGTTTGGACCGA 62.668 66.667 0.00 0.00 0.00 4.69
244 245 4.973055 TGGGCGACGTTTGGACCG 62.973 66.667 0.00 0.00 0.00 4.79
245 246 2.359478 ATGGGCGACGTTTGGACC 60.359 61.111 0.00 0.00 0.00 4.46
246 247 2.867472 CATGGGCGACGTTTGGAC 59.133 61.111 0.00 0.00 0.00 4.02
247 248 3.053291 GCATGGGCGACGTTTGGA 61.053 61.111 0.00 0.00 0.00 3.53
257 258 0.733150 GTTTAAGTCCTCGCATGGGC 59.267 55.000 4.59 0.00 0.00 5.36
258 259 1.379527 GGTTTAAGTCCTCGCATGGG 58.620 55.000 2.76 2.76 0.00 4.00
259 260 1.065418 AGGGTTTAAGTCCTCGCATGG 60.065 52.381 0.00 0.00 0.00 3.66
260 261 2.403252 AGGGTTTAAGTCCTCGCATG 57.597 50.000 0.00 0.00 0.00 4.06
261 262 2.169978 GGTAGGGTTTAAGTCCTCGCAT 59.830 50.000 2.45 0.00 34.75 4.73
262 263 1.551883 GGTAGGGTTTAAGTCCTCGCA 59.448 52.381 2.45 0.00 34.75 5.10
263 264 1.551883 TGGTAGGGTTTAAGTCCTCGC 59.448 52.381 2.45 0.00 34.75 5.03
264 265 3.967332 TTGGTAGGGTTTAAGTCCTCG 57.033 47.619 2.45 0.00 34.75 4.63
265 266 5.695424 AGATTGGTAGGGTTTAAGTCCTC 57.305 43.478 2.45 0.00 34.75 3.71
266 267 6.269974 AGTAGATTGGTAGGGTTTAAGTCCT 58.730 40.000 4.45 4.45 37.18 3.85
267 268 6.556974 AGTAGATTGGTAGGGTTTAAGTCC 57.443 41.667 0.00 0.00 0.00 3.85
268 269 7.208777 GCTAGTAGATTGGTAGGGTTTAAGTC 58.791 42.308 0.00 0.00 0.00 3.01
269 270 6.099413 GGCTAGTAGATTGGTAGGGTTTAAGT 59.901 42.308 0.00 0.00 0.00 2.24
270 271 6.522946 GGCTAGTAGATTGGTAGGGTTTAAG 58.477 44.000 0.00 0.00 0.00 1.85
271 272 5.069516 CGGCTAGTAGATTGGTAGGGTTTAA 59.930 44.000 0.00 0.00 0.00 1.52
272 273 4.586001 CGGCTAGTAGATTGGTAGGGTTTA 59.414 45.833 0.00 0.00 0.00 2.01
273 274 3.387050 CGGCTAGTAGATTGGTAGGGTTT 59.613 47.826 0.00 0.00 0.00 3.27
274 275 2.963782 CGGCTAGTAGATTGGTAGGGTT 59.036 50.000 0.00 0.00 0.00 4.11
275 276 2.595238 CGGCTAGTAGATTGGTAGGGT 58.405 52.381 0.00 0.00 0.00 4.34
276 277 1.893801 CCGGCTAGTAGATTGGTAGGG 59.106 57.143 0.00 0.00 0.00 3.53
277 278 2.872732 TCCGGCTAGTAGATTGGTAGG 58.127 52.381 0.00 0.00 0.00 3.18
278 279 4.156922 CAGATCCGGCTAGTAGATTGGTAG 59.843 50.000 0.00 0.00 0.00 3.18
279 280 4.079970 CAGATCCGGCTAGTAGATTGGTA 58.920 47.826 0.00 0.00 0.00 3.25
280 281 2.894126 CAGATCCGGCTAGTAGATTGGT 59.106 50.000 0.00 0.00 0.00 3.67
281 282 2.232452 CCAGATCCGGCTAGTAGATTGG 59.768 54.545 0.00 0.00 0.00 3.16
282 283 2.232452 CCCAGATCCGGCTAGTAGATTG 59.768 54.545 0.00 0.00 0.00 2.67
283 284 2.530701 CCCAGATCCGGCTAGTAGATT 58.469 52.381 0.00 0.00 0.00 2.40
284 285 1.272760 CCCCAGATCCGGCTAGTAGAT 60.273 57.143 0.00 0.00 0.00 1.98
285 286 0.112606 CCCCAGATCCGGCTAGTAGA 59.887 60.000 0.00 0.00 0.00 2.59
286 287 1.536943 GCCCCAGATCCGGCTAGTAG 61.537 65.000 0.00 0.00 42.21 2.57
287 288 1.533273 GCCCCAGATCCGGCTAGTA 60.533 63.158 0.00 0.00 42.21 1.82
288 289 2.844839 GCCCCAGATCCGGCTAGT 60.845 66.667 0.00 0.00 42.21 2.57
289 290 2.844362 TGCCCCAGATCCGGCTAG 60.844 66.667 15.05 0.00 45.90 3.42
290 291 3.161450 GTGCCCCAGATCCGGCTA 61.161 66.667 15.05 2.22 45.90 3.93
300 301 2.770130 GGGATTTCTGGTGCCCCA 59.230 61.111 0.00 0.00 38.87 4.96
302 303 1.076705 GAGGGGATTTCTGGTGCCC 60.077 63.158 0.00 0.00 46.77 5.36
303 304 1.076705 GGAGGGGATTTCTGGTGCC 60.077 63.158 0.00 0.00 0.00 5.01
304 305 1.076705 GGGAGGGGATTTCTGGTGC 60.077 63.158 0.00 0.00 0.00 5.01
305 306 1.615262 GGGGAGGGGATTTCTGGTG 59.385 63.158 0.00 0.00 0.00 4.17
306 307 2.001269 CGGGGAGGGGATTTCTGGT 61.001 63.158 0.00 0.00 0.00 4.00
307 308 2.919043 CGGGGAGGGGATTTCTGG 59.081 66.667 0.00 0.00 0.00 3.86
308 309 2.193248 GCGGGGAGGGGATTTCTG 59.807 66.667 0.00 0.00 0.00 3.02
309 310 3.097162 GGCGGGGAGGGGATTTCT 61.097 66.667 0.00 0.00 0.00 2.52
310 311 3.416880 TGGCGGGGAGGGGATTTC 61.417 66.667 0.00 0.00 0.00 2.17
311 312 3.739613 GTGGCGGGGAGGGGATTT 61.740 66.667 0.00 0.00 0.00 2.17
336 337 4.976925 CCTATGCCTGCCGCTCCG 62.977 72.222 0.00 0.00 38.78 4.63
337 338 3.527775 CTCCTATGCCTGCCGCTCC 62.528 68.421 0.00 0.00 38.78 4.70
338 339 2.030262 CTCCTATGCCTGCCGCTC 59.970 66.667 0.00 0.00 38.78 5.03
339 340 2.444706 TCTCCTATGCCTGCCGCT 60.445 61.111 0.00 0.00 38.78 5.52
340 341 2.030262 CTCTCCTATGCCTGCCGC 59.970 66.667 0.00 0.00 38.31 6.53
341 342 2.739784 CCTCTCCTATGCCTGCCG 59.260 66.667 0.00 0.00 0.00 5.69
342 343 2.429494 GCCTCTCCTATGCCTGCC 59.571 66.667 0.00 0.00 0.00 4.85
343 344 2.030262 CGCCTCTCCTATGCCTGC 59.970 66.667 0.00 0.00 0.00 4.85
344 345 0.683973 ATTCGCCTCTCCTATGCCTG 59.316 55.000 0.00 0.00 0.00 4.85
345 346 0.972883 GATTCGCCTCTCCTATGCCT 59.027 55.000 0.00 0.00 0.00 4.75
346 347 0.036858 GGATTCGCCTCTCCTATGCC 60.037 60.000 0.00 0.00 0.00 4.40
347 348 0.681733 TGGATTCGCCTCTCCTATGC 59.318 55.000 0.00 0.00 37.63 3.14
348 349 1.336332 CGTGGATTCGCCTCTCCTATG 60.336 57.143 0.00 0.00 37.63 2.23
349 350 0.962489 CGTGGATTCGCCTCTCCTAT 59.038 55.000 0.00 0.00 37.63 2.57
350 351 1.107538 CCGTGGATTCGCCTCTCCTA 61.108 60.000 0.00 0.00 37.63 2.94
351 352 2.427245 CCGTGGATTCGCCTCTCCT 61.427 63.158 0.00 0.00 37.63 3.69
352 353 2.107141 CCGTGGATTCGCCTCTCC 59.893 66.667 0.00 0.00 37.63 3.71
353 354 2.107141 CCCGTGGATTCGCCTCTC 59.893 66.667 0.00 0.00 37.63 3.20
354 355 4.162690 GCCCGTGGATTCGCCTCT 62.163 66.667 0.00 0.00 37.63 3.69
355 356 4.162690 AGCCCGTGGATTCGCCTC 62.163 66.667 0.00 0.00 37.63 4.70
356 357 4.162690 GAGCCCGTGGATTCGCCT 62.163 66.667 0.00 0.00 37.63 5.52
369 370 4.593864 GATCTCCACCGGCGAGCC 62.594 72.222 9.30 3.59 0.00 4.70
370 371 4.933064 CGATCTCCACCGGCGAGC 62.933 72.222 9.30 2.12 0.00 5.03
371 372 3.187699 CTCGATCTCCACCGGCGAG 62.188 68.421 9.30 12.03 41.77 5.03
372 373 3.209812 CTCGATCTCCACCGGCGA 61.210 66.667 9.30 0.00 0.00 5.54
373 374 4.271816 CCTCGATCTCCACCGGCG 62.272 72.222 0.00 0.00 0.00 6.46
374 375 3.917760 CCCTCGATCTCCACCGGC 61.918 72.222 0.00 0.00 0.00 6.13
375 376 1.739338 CTTCCCTCGATCTCCACCGG 61.739 65.000 0.00 0.00 0.00 5.28
376 377 1.736586 CTTCCCTCGATCTCCACCG 59.263 63.158 0.00 0.00 0.00 4.94
377 378 0.397254 TCCTTCCCTCGATCTCCACC 60.397 60.000 0.00 0.00 0.00 4.61
378 379 1.410882 CTTCCTTCCCTCGATCTCCAC 59.589 57.143 0.00 0.00 0.00 4.02
379 380 1.288037 TCTTCCTTCCCTCGATCTCCA 59.712 52.381 0.00 0.00 0.00 3.86
380 381 1.684450 GTCTTCCTTCCCTCGATCTCC 59.316 57.143 0.00 0.00 0.00 3.71
381 382 2.661718 AGTCTTCCTTCCCTCGATCTC 58.338 52.381 0.00 0.00 0.00 2.75
382 383 2.838637 AGTCTTCCTTCCCTCGATCT 57.161 50.000 0.00 0.00 0.00 2.75
383 384 3.195825 TGAAAGTCTTCCTTCCCTCGATC 59.804 47.826 0.00 0.00 31.27 3.69
384 385 3.055747 GTGAAAGTCTTCCTTCCCTCGAT 60.056 47.826 0.00 0.00 31.27 3.59
385 386 2.299297 GTGAAAGTCTTCCTTCCCTCGA 59.701 50.000 0.00 0.00 31.27 4.04
386 387 2.300437 AGTGAAAGTCTTCCTTCCCTCG 59.700 50.000 0.00 0.00 31.27 4.63
387 388 4.528987 ACTAGTGAAAGTCTTCCTTCCCTC 59.471 45.833 0.00 0.00 31.27 4.30
388 389 4.494591 ACTAGTGAAAGTCTTCCTTCCCT 58.505 43.478 0.00 0.00 31.27 4.20
389 390 4.618693 CGACTAGTGAAAGTCTTCCTTCCC 60.619 50.000 0.00 0.00 43.11 3.97
390 391 4.487019 CGACTAGTGAAAGTCTTCCTTCC 58.513 47.826 0.00 0.00 43.11 3.46
391 392 3.921630 GCGACTAGTGAAAGTCTTCCTTC 59.078 47.826 0.00 0.00 43.11 3.46
392 393 3.306156 GGCGACTAGTGAAAGTCTTCCTT 60.306 47.826 0.00 0.00 43.11 3.36
393 394 2.231721 GGCGACTAGTGAAAGTCTTCCT 59.768 50.000 0.00 0.00 43.11 3.36
394 395 2.231721 AGGCGACTAGTGAAAGTCTTCC 59.768 50.000 0.00 3.97 43.11 3.46
395 396 3.579335 AGGCGACTAGTGAAAGTCTTC 57.421 47.619 0.00 0.00 43.11 2.87
396 397 3.306156 GGAAGGCGACTAGTGAAAGTCTT 60.306 47.826 0.00 1.80 43.11 3.01
397 398 2.231721 GGAAGGCGACTAGTGAAAGTCT 59.768 50.000 0.00 0.00 43.11 3.24
398 399 2.608268 GGAAGGCGACTAGTGAAAGTC 58.392 52.381 0.00 0.00 42.68 3.01
399 400 1.067776 CGGAAGGCGACTAGTGAAAGT 60.068 52.381 0.00 0.00 42.68 2.66
400 401 1.201647 TCGGAAGGCGACTAGTGAAAG 59.798 52.381 0.00 0.00 42.68 2.62
401 402 1.201647 CTCGGAAGGCGACTAGTGAAA 59.798 52.381 0.00 0.00 42.68 2.69
402 403 0.809385 CTCGGAAGGCGACTAGTGAA 59.191 55.000 0.00 0.00 42.68 3.18
403 404 0.035725 TCTCGGAAGGCGACTAGTGA 60.036 55.000 0.00 0.00 42.68 3.41
404 405 0.378962 CTCTCGGAAGGCGACTAGTG 59.621 60.000 0.00 0.00 42.68 2.74
405 406 0.748729 CCTCTCGGAAGGCGACTAGT 60.749 60.000 0.00 0.00 42.68 2.57
406 407 1.448922 CCCTCTCGGAAGGCGACTAG 61.449 65.000 0.00 0.00 42.68 2.57
407 408 1.453379 CCCTCTCGGAAGGCGACTA 60.453 63.158 0.00 0.00 42.68 2.59
409 410 3.839432 CCCCTCTCGGAAGGCGAC 61.839 72.222 0.00 0.00 34.88 5.19
410 411 3.595428 TTCCCCTCTCGGAAGGCGA 62.595 63.158 0.00 0.00 36.98 5.54
411 412 2.579684 CTTTCCCCTCTCGGAAGGCG 62.580 65.000 0.00 0.00 42.81 5.52
412 413 1.222113 CTTTCCCCTCTCGGAAGGC 59.778 63.158 0.00 0.00 42.81 4.35
413 414 1.276622 TTCTTTCCCCTCTCGGAAGG 58.723 55.000 0.00 0.00 42.81 3.46
414 415 3.418684 TTTTCTTTCCCCTCTCGGAAG 57.581 47.619 0.00 0.00 42.81 3.46
415 416 3.137728 AGTTTTTCTTTCCCCTCTCGGAA 59.862 43.478 0.00 0.00 40.23 4.30
416 417 2.709397 AGTTTTTCTTTCCCCTCTCGGA 59.291 45.455 0.00 0.00 0.00 4.55
417 418 3.141767 AGTTTTTCTTTCCCCTCTCGG 57.858 47.619 0.00 0.00 0.00 4.63
418 419 6.430000 TCATTAAGTTTTTCTTTCCCCTCTCG 59.570 38.462 0.00 0.00 37.56 4.04
419 420 7.761038 TCATTAAGTTTTTCTTTCCCCTCTC 57.239 36.000 0.00 0.00 37.56 3.20
420 421 8.727100 AATCATTAAGTTTTTCTTTCCCCTCT 57.273 30.769 0.00 0.00 37.56 3.69
421 422 9.208022 CAAATCATTAAGTTTTTCTTTCCCCTC 57.792 33.333 0.00 0.00 37.56 4.30
422 423 8.933653 TCAAATCATTAAGTTTTTCTTTCCCCT 58.066 29.630 0.00 0.00 37.56 4.79
423 424 8.988934 GTCAAATCATTAAGTTTTTCTTTCCCC 58.011 33.333 0.00 0.00 37.56 4.81
424 425 8.699749 CGTCAAATCATTAAGTTTTTCTTTCCC 58.300 33.333 0.00 0.00 37.56 3.97
425 426 9.458374 TCGTCAAATCATTAAGTTTTTCTTTCC 57.542 29.630 0.00 0.00 37.56 3.13
437 438 8.537223 GCGAGTTAATAGTCGTCAAATCATTAA 58.463 33.333 0.00 0.00 46.51 1.40
438 439 7.703197 TGCGAGTTAATAGTCGTCAAATCATTA 59.297 33.333 0.00 0.00 46.51 1.90
439 440 6.533723 TGCGAGTTAATAGTCGTCAAATCATT 59.466 34.615 0.00 0.00 46.51 2.57
440 441 6.040247 TGCGAGTTAATAGTCGTCAAATCAT 58.960 36.000 0.00 0.00 46.51 2.45
441 442 5.404096 TGCGAGTTAATAGTCGTCAAATCA 58.596 37.500 0.00 0.00 46.51 2.57
442 443 5.944049 TGCGAGTTAATAGTCGTCAAATC 57.056 39.130 0.00 0.00 46.51 2.17
443 444 7.997107 TTATGCGAGTTAATAGTCGTCAAAT 57.003 32.000 0.00 0.00 46.51 2.32
444 445 7.815398 TTTATGCGAGTTAATAGTCGTCAAA 57.185 32.000 0.00 0.00 46.51 2.69
445 446 7.815398 TTTTATGCGAGTTAATAGTCGTCAA 57.185 32.000 0.00 0.00 46.51 3.18
446 447 7.997107 ATTTTATGCGAGTTAATAGTCGTCA 57.003 32.000 0.00 0.00 46.51 4.35
447 448 9.144085 CAAATTTTATGCGAGTTAATAGTCGTC 57.856 33.333 0.00 0.00 46.51 4.20
448 449 8.662141 ACAAATTTTATGCGAGTTAATAGTCGT 58.338 29.630 0.00 0.00 46.51 4.34
450 451 9.982291 TCACAAATTTTATGCGAGTTAATAGTC 57.018 29.630 0.00 0.00 0.00 2.59
491 492 9.807649 GCACAACTAATATTCATCAGGAAATTT 57.192 29.630 0.00 0.00 39.39 1.82
492 493 8.970020 TGCACAACTAATATTCATCAGGAAATT 58.030 29.630 0.00 0.00 39.39 1.82
493 494 8.408601 GTGCACAACTAATATTCATCAGGAAAT 58.591 33.333 13.17 0.00 39.39 2.17
494 495 7.392953 TGTGCACAACTAATATTCATCAGGAAA 59.607 33.333 19.28 0.00 39.39 3.13
495 496 6.883756 TGTGCACAACTAATATTCATCAGGAA 59.116 34.615 19.28 0.00 40.46 3.36
496 497 6.413892 TGTGCACAACTAATATTCATCAGGA 58.586 36.000 19.28 0.00 0.00 3.86
497 498 6.682423 TGTGCACAACTAATATTCATCAGG 57.318 37.500 19.28 0.00 0.00 3.86
498 499 6.690098 GCTTGTGCACAACTAATATTCATCAG 59.310 38.462 27.96 13.87 39.41 2.90
499 500 6.150809 TGCTTGTGCACAACTAATATTCATCA 59.849 34.615 27.96 4.28 45.31 3.07
500 501 6.554419 TGCTTGTGCACAACTAATATTCATC 58.446 36.000 27.96 1.51 45.31 2.92
501 502 6.513806 TGCTTGTGCACAACTAATATTCAT 57.486 33.333 27.96 0.00 45.31 2.57
502 503 5.956068 TGCTTGTGCACAACTAATATTCA 57.044 34.783 27.96 12.09 45.31 2.57
516 517 6.456988 GGTGATATGTAGTTAAGTGCTTGTGC 60.457 42.308 0.00 0.00 40.20 4.57
517 518 6.037172 GGGTGATATGTAGTTAAGTGCTTGTG 59.963 42.308 0.00 0.00 0.00 3.33
518 519 6.113411 GGGTGATATGTAGTTAAGTGCTTGT 58.887 40.000 0.00 0.00 0.00 3.16
519 520 6.112734 TGGGTGATATGTAGTTAAGTGCTTG 58.887 40.000 0.00 0.00 0.00 4.01
520 521 6.308015 TGGGTGATATGTAGTTAAGTGCTT 57.692 37.500 0.00 0.00 0.00 3.91
521 522 5.950544 TGGGTGATATGTAGTTAAGTGCT 57.049 39.130 0.00 0.00 0.00 4.40
522 523 8.256611 CATATGGGTGATATGTAGTTAAGTGC 57.743 38.462 0.00 0.00 39.40 4.40
574 575 8.491134 GGGCAAAAGGATAATTAACCCTTAATT 58.509 33.333 17.67 10.15 45.19 1.40
575 576 7.849389 AGGGCAAAAGGATAATTAACCCTTAAT 59.151 33.333 17.67 10.50 42.56 1.40
576 577 7.193338 AGGGCAAAAGGATAATTAACCCTTAA 58.807 34.615 17.67 0.00 42.56 1.85
606 607 2.346766 AAACTGAGCACATGGACACA 57.653 45.000 0.00 0.00 0.00 3.72
918 1000 1.365368 CGTGCTCTCTCTCTCTCGCA 61.365 60.000 0.00 0.00 0.00 5.10
991 1217 1.107114 GAGGAAGACATGGAGCTCGA 58.893 55.000 7.83 3.70 0.00 4.04
1227 1453 2.156917 CATGTCACCTGCATGAACACT 58.843 47.619 0.00 0.00 44.60 3.55
1270 1496 3.009363 TCATTCATCAGAGTCTTGGCCAA 59.991 43.478 19.25 19.25 0.00 4.52
1362 1588 3.190383 TCACCCTCCATCTCTTCTTCA 57.810 47.619 0.00 0.00 0.00 3.02
1419 1645 6.348868 GCTTCCTAACCTTCTTCTTCAACATG 60.349 42.308 0.00 0.00 0.00 3.21
1527 1756 7.852971 AATTCATGCCTTTCCATACATTTTG 57.147 32.000 0.00 0.00 0.00 2.44
1635 1891 6.625873 AAATGTTGGTCACTTCTTCTCTTC 57.374 37.500 0.00 0.00 0.00 2.87
1784 2053 3.370953 CCCATTAGTCTAGCCTGCACTTT 60.371 47.826 0.00 0.00 0.00 2.66
2118 2457 8.893563 TTTCCACCCTTCATTATTTTAGACAT 57.106 30.769 0.00 0.00 0.00 3.06
2128 2469 4.155709 TGTGCATTTTCCACCCTTCATTA 58.844 39.130 0.00 0.00 32.30 1.90
2335 2715 2.375014 ACGTTTCCAACCCTCCAAAT 57.625 45.000 0.00 0.00 0.00 2.32
2371 2774 4.469657 AGTGCCACTCTAACCAAAATCAA 58.530 39.130 0.00 0.00 0.00 2.57
2469 2896 4.587891 AGAAGCCCTCTCTTTCATTCAAG 58.412 43.478 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.