Multiple sequence alignment - TraesCS5D01G006900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G006900 chr5D 100.000 3667 0 0 1 3667 5792529 5796195 0.000000e+00 6772
1 TraesCS5D01G006900 chr5D 84.057 1060 146 10 855 1910 6356008 6354968 0.000000e+00 1000
2 TraesCS5D01G006900 chr5D 77.870 1324 209 50 948 2253 553627080 553625823 0.000000e+00 745
3 TraesCS5D01G006900 chr5D 87.302 378 43 5 2407 2782 6712326 6711952 9.410000e-116 427
4 TraesCS5D01G006900 chr5D 79.455 477 72 15 1765 2236 6492760 6492305 7.640000e-82 315
5 TraesCS5D01G006900 chr5D 81.115 323 42 11 3355 3667 6711213 6710900 1.320000e-59 241
6 TraesCS5D01G006900 chr5D 89.677 155 12 4 2243 2395 354256789 354256941 1.040000e-45 195
7 TraesCS5D01G006900 chr5D 89.209 139 12 3 2258 2394 512301006 512300869 1.750000e-38 171
8 TraesCS5D01G006900 chr5D 78.000 250 47 5 2467 2715 6372688 6372446 2.280000e-32 150
9 TraesCS5D01G006900 chr5D 85.401 137 20 0 2100 2236 6354808 6354672 3.820000e-30 143
10 TraesCS5D01G006900 chr5D 85.827 127 14 1 2134 2260 6712445 6712323 8.260000e-27 132
11 TraesCS5D01G006900 chr5A 92.074 1514 79 10 752 2261 3423179 3421703 0.000000e+00 2093
12 TraesCS5D01G006900 chr5A 84.143 1318 168 27 904 2216 3313526 3314807 0.000000e+00 1238
13 TraesCS5D01G006900 chr5A 90.837 633 40 13 2387 3016 3421718 3421101 0.000000e+00 832
14 TraesCS5D01G006900 chr5A 90.352 653 22 7 3019 3667 3420866 3420251 0.000000e+00 819
15 TraesCS5D01G006900 chr5A 85.862 290 25 9 3393 3667 3405947 3405659 9.960000e-76 294
16 TraesCS5D01G006900 chr5A 94.737 95 5 0 13 107 3424201 3424107 8.200000e-32 148
17 TraesCS5D01G006900 chr5A 80.874 183 34 1 2533 2715 3304474 3304655 3.820000e-30 143
18 TraesCS5D01G006900 chr5A 87.097 124 4 2 618 741 3423418 3423307 2.970000e-26 130
19 TraesCS5D01G006900 chr5B 81.115 1292 195 31 937 2216 6603172 6601918 0.000000e+00 989
20 TraesCS5D01G006900 chr5B 87.977 707 75 5 1139 1838 6498043 6497340 0.000000e+00 826
21 TraesCS5D01G006900 chr5B 77.717 1279 189 52 989 2250 697172777 697173976 0.000000e+00 695
22 TraesCS5D01G006900 chr5B 94.353 425 23 1 1837 2261 6497227 6496804 0.000000e+00 651
23 TraesCS5D01G006900 chr5B 88.433 536 47 5 3144 3667 6489932 6489400 1.860000e-177 632
24 TraesCS5D01G006900 chr5B 88.859 377 33 7 2387 2757 6496819 6496446 4.320000e-124 455
25 TraesCS5D01G006900 chr5B 88.740 373 36 6 2387 2757 5429956 5429588 5.580000e-123 451
26 TraesCS5D01G006900 chr5B 77.807 748 134 17 932 1654 1164236 1163496 2.020000e-117 433
27 TraesCS5D01G006900 chr5B 92.829 251 16 1 2013 2261 5430191 5429941 2.690000e-96 363
28 TraesCS5D01G006900 chr5B 85.666 293 23 13 3393 3667 6407875 6407584 1.290000e-74 291
29 TraesCS5D01G006900 chr5B 78.405 301 55 7 2465 2759 6601819 6601523 1.740000e-43 187
30 TraesCS5D01G006900 chr5B 86.667 150 8 4 2264 2401 418466912 418467061 4.900000e-34 156
31 TraesCS5D01G006900 chr2D 79.275 883 151 20 963 1831 648120888 648121752 4.080000e-164 588
32 TraesCS5D01G006900 chr2D 90.972 144 6 4 2262 2399 218770830 218770688 1.740000e-43 187
33 TraesCS5D01G006900 chr2D 90.278 144 7 4 2262 2399 343107882 343107740 8.090000e-42 182
34 TraesCS5D01G006900 chrUn 78.019 969 173 25 932 1883 31327035 31326090 1.140000e-159 573
35 TraesCS5D01G006900 chrUn 78.369 883 159 18 963 1831 31312883 31312019 8.960000e-151 544
36 TraesCS5D01G006900 chrUn 81.410 156 27 2 2102 2257 31325819 31325666 3.840000e-25 126
37 TraesCS5D01G006900 chr4A 77.537 1015 163 40 941 1930 614963011 614963985 5.350000e-153 551
38 TraesCS5D01G006900 chr4A 92.810 153 8 3 2250 2401 330087254 330087404 6.170000e-53 219
39 TraesCS5D01G006900 chr4A 80.711 197 29 4 2547 2742 615044936 615045124 1.060000e-30 145
40 TraesCS5D01G006900 chr4A 79.104 201 32 6 2547 2745 614983126 614983318 2.970000e-26 130
41 TraesCS5D01G006900 chr4A 79.058 191 31 4 2547 2736 615083052 615083234 4.970000e-24 122
42 TraesCS5D01G006900 chr2B 78.330 886 154 21 963 1831 781796049 781795185 4.170000e-149 538
43 TraesCS5D01G006900 chr1B 97.842 139 3 0 2260 2398 119126415 119126553 1.320000e-59 241
44 TraesCS5D01G006900 chr6D 91.852 135 11 0 2263 2397 377832301 377832435 4.830000e-44 189
45 TraesCS5D01G006900 chr1D 83.803 142 15 5 2262 2395 423252249 423252390 1.070000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G006900 chr5D 5792529 5796195 3666 False 6772.000000 6772 100.000000 1 3667 1 chr5D.!!$F1 3666
1 TraesCS5D01G006900 chr5D 553625823 553627080 1257 True 745.000000 745 77.870000 948 2253 1 chr5D.!!$R4 1305
2 TraesCS5D01G006900 chr5D 6354672 6356008 1336 True 571.500000 1000 84.729000 855 2236 2 chr5D.!!$R5 1381
3 TraesCS5D01G006900 chr5D 6710900 6712445 1545 True 266.666667 427 84.748000 2134 3667 3 chr5D.!!$R6 1533
4 TraesCS5D01G006900 chr5A 3313526 3314807 1281 False 1238.000000 1238 84.143000 904 2216 1 chr5A.!!$F2 1312
5 TraesCS5D01G006900 chr5A 3420251 3424201 3950 True 804.400000 2093 91.019400 13 3667 5 chr5A.!!$R2 3654
6 TraesCS5D01G006900 chr5B 697172777 697173976 1199 False 695.000000 695 77.717000 989 2250 1 chr5B.!!$F2 1261
7 TraesCS5D01G006900 chr5B 6496446 6498043 1597 True 644.000000 826 90.396333 1139 2757 3 chr5B.!!$R5 1618
8 TraesCS5D01G006900 chr5B 6489400 6489932 532 True 632.000000 632 88.433000 3144 3667 1 chr5B.!!$R3 523
9 TraesCS5D01G006900 chr5B 6601523 6603172 1649 True 588.000000 989 79.760000 937 2759 2 chr5B.!!$R6 1822
10 TraesCS5D01G006900 chr5B 1163496 1164236 740 True 433.000000 433 77.807000 932 1654 1 chr5B.!!$R1 722
11 TraesCS5D01G006900 chr5B 5429588 5430191 603 True 407.000000 451 90.784500 2013 2757 2 chr5B.!!$R4 744
12 TraesCS5D01G006900 chr2D 648120888 648121752 864 False 588.000000 588 79.275000 963 1831 1 chr2D.!!$F1 868
13 TraesCS5D01G006900 chrUn 31312019 31312883 864 True 544.000000 544 78.369000 963 1831 1 chrUn.!!$R1 868
14 TraesCS5D01G006900 chrUn 31325666 31327035 1369 True 349.500000 573 79.714500 932 2257 2 chrUn.!!$R2 1325
15 TraesCS5D01G006900 chr4A 614963011 614963985 974 False 551.000000 551 77.537000 941 1930 1 chr4A.!!$F2 989
16 TraesCS5D01G006900 chr2B 781795185 781796049 864 True 538.000000 538 78.330000 963 1831 1 chr2B.!!$R1 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.029834 GCATACGCAGGCATCCTTTG 59.970 55.0 0.00 0.0 38.36 2.77 F
324 325 0.036164 TACGCAGGCATCCTTTGTGT 59.964 50.0 0.00 0.0 38.85 3.72 F
327 328 0.037975 GCAGGCATCCTTTGTGTTGG 60.038 55.0 0.00 0.0 0.00 3.77 F
2296 3216 0.248949 GTAAGGCGACCTAAGGCGAG 60.249 60.0 4.41 0.0 39.33 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 3240 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.0 0.0 6.13 R
2321 3241 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.0 0.0 6.13 R
2322 3242 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.0 0.0 5.36 R
3268 4501 0.545071 AAAGAAAGGGGTGCATGGGG 60.545 55.000 0.00 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.570926 ATCCCAGTACATATGCGTACG 57.429 47.619 11.84 11.84 45.25 3.67
60 61 3.475575 TCCCAGTACATATGCGTACGTA 58.524 45.455 17.90 13.65 45.25 3.57
95 96 3.644966 TTCCATCGTTCAAAGCCCTAT 57.355 42.857 0.00 0.00 0.00 2.57
107 108 7.334421 CGTTCAAAGCCCTATGTTGCTATATAT 59.666 37.037 0.00 0.00 36.66 0.86
108 109 9.667107 GTTCAAAGCCCTATGTTGCTATATATA 57.333 33.333 0.00 0.00 36.66 0.86
112 113 6.817184 AGCCCTATGTTGCTATATATAACCG 58.183 40.000 0.00 0.00 35.69 4.44
114 115 5.690409 CCCTATGTTGCTATATATAACCGCG 59.310 44.000 0.00 0.00 0.00 6.46
115 116 5.175126 CCTATGTTGCTATATATAACCGCGC 59.825 44.000 0.00 0.00 0.00 6.86
116 117 2.918600 TGTTGCTATATATAACCGCGCG 59.081 45.455 25.67 25.67 0.00 6.86
117 118 2.919229 GTTGCTATATATAACCGCGCGT 59.081 45.455 29.95 14.20 0.00 6.01
118 119 3.220507 TGCTATATATAACCGCGCGTT 57.779 42.857 29.95 23.32 38.57 4.84
120 121 3.989167 TGCTATATATAACCGCGCGTTTT 59.011 39.130 29.95 22.56 35.79 2.43
121 122 4.143284 TGCTATATATAACCGCGCGTTTTG 60.143 41.667 29.95 15.91 35.79 2.44
124 125 0.095589 TATAACCGCGCGTTTTGCAG 59.904 50.000 29.95 13.89 46.97 4.41
126 127 1.570347 TAACCGCGCGTTTTGCAGAT 61.570 50.000 29.95 8.51 46.97 2.90
127 128 2.574212 CCGCGCGTTTTGCAGATC 60.574 61.111 29.95 0.00 46.97 2.75
129 130 2.139811 CGCGCGTTTTGCAGATCAC 61.140 57.895 24.19 0.00 46.97 3.06
131 132 1.061799 GCGCGTTTTGCAGATCACAG 61.062 55.000 8.43 0.00 46.97 3.66
133 134 0.109597 GCGTTTTGCAGATCACAGGG 60.110 55.000 0.00 0.00 45.45 4.45
134 135 0.523072 CGTTTTGCAGATCACAGGGG 59.477 55.000 0.00 0.00 0.00 4.79
135 136 1.620822 GTTTTGCAGATCACAGGGGT 58.379 50.000 0.00 0.00 0.00 4.95
136 137 1.270550 GTTTTGCAGATCACAGGGGTG 59.729 52.381 0.00 0.00 46.66 4.61
137 138 0.251297 TTTGCAGATCACAGGGGTGG 60.251 55.000 0.00 0.00 45.32 4.61
140 141 0.678048 GCAGATCACAGGGGTGGTTC 60.678 60.000 0.00 0.00 45.32 3.62
141 142 0.035056 CAGATCACAGGGGTGGTTCC 60.035 60.000 0.00 0.00 45.32 3.62
142 143 1.078426 GATCACAGGGGTGGTTCCG 60.078 63.158 0.00 0.00 45.32 4.30
144 145 0.914417 ATCACAGGGGTGGTTCCGAT 60.914 55.000 0.00 0.00 45.32 4.18
145 146 1.078426 CACAGGGGTGGTTCCGATC 60.078 63.158 0.00 0.00 41.45 3.69
146 147 2.186903 CAGGGGTGGTTCCGATCG 59.813 66.667 8.51 8.51 37.00 3.69
147 148 2.038329 AGGGGTGGTTCCGATCGA 59.962 61.111 18.66 0.00 37.00 3.59
148 149 1.382695 AGGGGTGGTTCCGATCGAT 60.383 57.895 18.66 0.00 37.00 3.59
150 151 0.107361 GGGGTGGTTCCGATCGATTT 60.107 55.000 18.66 0.00 37.00 2.17
152 153 1.400494 GGGTGGTTCCGATCGATTTTG 59.600 52.381 18.66 0.00 37.00 2.44
153 154 2.081462 GGTGGTTCCGATCGATTTTGT 58.919 47.619 18.66 0.00 0.00 2.83
154 155 2.486592 GGTGGTTCCGATCGATTTTGTT 59.513 45.455 18.66 0.00 0.00 2.83
155 156 3.488489 GTGGTTCCGATCGATTTTGTTG 58.512 45.455 18.66 0.00 0.00 3.33
156 157 2.486203 TGGTTCCGATCGATTTTGTTGG 59.514 45.455 18.66 0.00 0.00 3.77
157 158 2.159435 GGTTCCGATCGATTTTGTTGGG 60.159 50.000 18.66 0.00 0.00 4.12
158 159 2.745281 GTTCCGATCGATTTTGTTGGGA 59.255 45.455 18.66 0.00 0.00 4.37
159 160 2.352388 TCCGATCGATTTTGTTGGGAC 58.648 47.619 18.66 0.00 0.00 4.46
160 161 2.027561 TCCGATCGATTTTGTTGGGACT 60.028 45.455 18.66 0.00 0.00 3.85
161 162 2.095853 CCGATCGATTTTGTTGGGACTG 59.904 50.000 18.66 0.00 0.00 3.51
162 163 2.095853 CGATCGATTTTGTTGGGACTGG 59.904 50.000 10.26 0.00 0.00 4.00
163 164 2.940994 TCGATTTTGTTGGGACTGGA 57.059 45.000 0.00 0.00 0.00 3.86
164 165 3.433306 TCGATTTTGTTGGGACTGGAT 57.567 42.857 0.00 0.00 0.00 3.41
165 166 3.081061 TCGATTTTGTTGGGACTGGATG 58.919 45.455 0.00 0.00 0.00 3.51
166 167 2.415893 CGATTTTGTTGGGACTGGATGC 60.416 50.000 0.00 0.00 0.00 3.91
167 168 2.380064 TTTTGTTGGGACTGGATGCT 57.620 45.000 0.00 0.00 0.00 3.79
168 169 3.517296 TTTTGTTGGGACTGGATGCTA 57.483 42.857 0.00 0.00 0.00 3.49
169 170 3.737559 TTTGTTGGGACTGGATGCTAT 57.262 42.857 0.00 0.00 0.00 2.97
170 171 2.715749 TGTTGGGACTGGATGCTATG 57.284 50.000 0.00 0.00 0.00 2.23
171 172 1.915489 TGTTGGGACTGGATGCTATGT 59.085 47.619 0.00 0.00 0.00 2.29
172 173 2.308570 TGTTGGGACTGGATGCTATGTT 59.691 45.455 0.00 0.00 0.00 2.71
173 174 2.684881 GTTGGGACTGGATGCTATGTTG 59.315 50.000 0.00 0.00 0.00 3.33
174 175 1.312815 GGGACTGGATGCTATGTTGC 58.687 55.000 0.00 0.00 0.00 4.17
175 176 1.133976 GGGACTGGATGCTATGTTGCT 60.134 52.381 0.00 0.00 0.00 3.91
176 177 1.945394 GGACTGGATGCTATGTTGCTG 59.055 52.381 0.00 0.00 0.00 4.41
177 178 1.332997 GACTGGATGCTATGTTGCTGC 59.667 52.381 0.00 0.00 0.00 5.25
178 179 1.064906 ACTGGATGCTATGTTGCTGCT 60.065 47.619 0.00 0.00 0.00 4.24
179 180 1.333931 CTGGATGCTATGTTGCTGCTG 59.666 52.381 0.00 0.00 0.00 4.41
180 181 0.030369 GGATGCTATGTTGCTGCTGC 59.970 55.000 8.89 8.89 40.20 5.25
181 182 1.022735 GATGCTATGTTGCTGCTGCT 58.977 50.000 17.00 0.00 40.48 4.24
182 183 0.738975 ATGCTATGTTGCTGCTGCTG 59.261 50.000 17.00 0.77 40.48 4.41
183 184 1.226603 GCTATGTTGCTGCTGCTGC 60.227 57.895 22.51 22.51 40.48 5.25
184 185 1.654954 GCTATGTTGCTGCTGCTGCT 61.655 55.000 27.67 13.27 40.48 4.24
185 186 0.098905 CTATGTTGCTGCTGCTGCTG 59.901 55.000 27.67 16.73 40.48 4.41
207 208 5.044428 GCAGCTGCATATAATCTTCCAAG 57.956 43.478 33.36 0.00 41.59 3.61
208 209 4.518211 GCAGCTGCATATAATCTTCCAAGT 59.482 41.667 33.36 0.00 41.59 3.16
209 210 5.334724 GCAGCTGCATATAATCTTCCAAGTC 60.335 44.000 33.36 0.00 41.59 3.01
210 211 5.996513 CAGCTGCATATAATCTTCCAAGTCT 59.003 40.000 0.00 0.00 0.00 3.24
211 212 6.147492 CAGCTGCATATAATCTTCCAAGTCTC 59.853 42.308 0.00 0.00 0.00 3.36
212 213 5.411053 GCTGCATATAATCTTCCAAGTCTCC 59.589 44.000 0.00 0.00 0.00 3.71
213 214 6.499106 TGCATATAATCTTCCAAGTCTCCA 57.501 37.500 0.00 0.00 0.00 3.86
214 215 6.899089 TGCATATAATCTTCCAAGTCTCCAA 58.101 36.000 0.00 0.00 0.00 3.53
215 216 7.345691 TGCATATAATCTTCCAAGTCTCCAAA 58.654 34.615 0.00 0.00 0.00 3.28
216 217 8.000709 TGCATATAATCTTCCAAGTCTCCAAAT 58.999 33.333 0.00 0.00 0.00 2.32
217 218 8.295288 GCATATAATCTTCCAAGTCTCCAAATG 58.705 37.037 0.00 0.00 0.00 2.32
218 219 9.347240 CATATAATCTTCCAAGTCTCCAAATGT 57.653 33.333 0.00 0.00 0.00 2.71
219 220 5.972107 AATCTTCCAAGTCTCCAAATGTG 57.028 39.130 0.00 0.00 0.00 3.21
220 221 4.437682 TCTTCCAAGTCTCCAAATGTGT 57.562 40.909 0.00 0.00 0.00 3.72
221 222 5.560722 TCTTCCAAGTCTCCAAATGTGTA 57.439 39.130 0.00 0.00 0.00 2.90
222 223 5.551233 TCTTCCAAGTCTCCAAATGTGTAG 58.449 41.667 0.00 0.00 0.00 2.74
223 224 5.306937 TCTTCCAAGTCTCCAAATGTGTAGA 59.693 40.000 0.00 0.00 0.00 2.59
224 225 5.762179 TCCAAGTCTCCAAATGTGTAGAT 57.238 39.130 0.00 0.00 0.00 1.98
225 226 6.867519 TCCAAGTCTCCAAATGTGTAGATA 57.132 37.500 0.00 0.00 0.00 1.98
226 227 7.437713 TCCAAGTCTCCAAATGTGTAGATAT 57.562 36.000 0.00 0.00 0.00 1.63
227 228 8.547481 TCCAAGTCTCCAAATGTGTAGATATA 57.453 34.615 0.00 0.00 0.00 0.86
228 229 8.421784 TCCAAGTCTCCAAATGTGTAGATATAC 58.578 37.037 0.00 0.00 0.00 1.47
229 230 8.204160 CCAAGTCTCCAAATGTGTAGATATACA 58.796 37.037 0.00 0.00 0.00 2.29
230 231 9.770097 CAAGTCTCCAAATGTGTAGATATACAT 57.230 33.333 3.07 0.00 39.29 2.29
242 243 7.804712 GTGTAGATATACATACACGCAGTAGT 58.195 38.462 3.07 0.00 41.53 2.73
243 244 8.288208 GTGTAGATATACATACACGCAGTAGTT 58.712 37.037 3.07 0.00 41.53 2.24
244 245 8.501580 TGTAGATATACATACACGCAGTAGTTC 58.498 37.037 0.00 0.00 41.61 3.01
245 246 6.910995 AGATATACATACACGCAGTAGTTCC 58.089 40.000 0.00 0.00 41.61 3.62
246 247 4.994907 ATACATACACGCAGTAGTTCCA 57.005 40.909 0.00 0.00 41.61 3.53
247 248 3.887621 ACATACACGCAGTAGTTCCAT 57.112 42.857 0.00 0.00 41.61 3.41
248 249 4.994907 ACATACACGCAGTAGTTCCATA 57.005 40.909 0.00 0.00 41.61 2.74
249 250 4.933330 ACATACACGCAGTAGTTCCATAG 58.067 43.478 0.00 0.00 41.61 2.23
250 251 4.643334 ACATACACGCAGTAGTTCCATAGA 59.357 41.667 0.00 0.00 41.61 1.98
251 252 5.302059 ACATACACGCAGTAGTTCCATAGAT 59.698 40.000 0.00 0.00 41.61 1.98
252 253 6.489022 ACATACACGCAGTAGTTCCATAGATA 59.511 38.462 0.00 0.00 41.61 1.98
253 254 7.176865 ACATACACGCAGTAGTTCCATAGATAT 59.823 37.037 0.00 0.00 41.61 1.63
254 255 8.674607 CATACACGCAGTAGTTCCATAGATATA 58.325 37.037 0.00 0.00 41.61 0.86
255 256 7.704578 ACACGCAGTAGTTCCATAGATATAT 57.295 36.000 0.00 0.00 41.61 0.86
256 257 8.123639 ACACGCAGTAGTTCCATAGATATATT 57.876 34.615 0.00 0.00 41.61 1.28
257 258 8.029522 ACACGCAGTAGTTCCATAGATATATTG 58.970 37.037 0.00 0.00 41.61 1.90
258 259 7.489435 CACGCAGTAGTTCCATAGATATATTGG 59.511 40.741 0.00 0.00 41.61 3.16
259 260 6.477033 CGCAGTAGTTCCATAGATATATTGGC 59.523 42.308 0.00 0.00 0.00 4.52
260 261 6.763610 GCAGTAGTTCCATAGATATATTGGCC 59.236 42.308 0.00 0.00 0.00 5.36
261 262 7.365117 GCAGTAGTTCCATAGATATATTGGCCT 60.365 40.741 3.32 0.00 0.00 5.19
262 263 7.984050 CAGTAGTTCCATAGATATATTGGCCTG 59.016 40.741 3.32 0.00 0.00 4.85
263 264 6.319048 AGTTCCATAGATATATTGGCCTGG 57.681 41.667 3.32 0.00 0.00 4.45
264 265 5.192522 AGTTCCATAGATATATTGGCCTGGG 59.807 44.000 3.32 0.00 0.00 4.45
265 266 4.709944 TCCATAGATATATTGGCCTGGGT 58.290 43.478 3.32 0.00 0.00 4.51
266 267 4.721776 TCCATAGATATATTGGCCTGGGTC 59.278 45.833 3.32 0.00 0.00 4.46
267 268 4.723789 CCATAGATATATTGGCCTGGGTCT 59.276 45.833 3.32 2.79 0.00 3.85
268 269 5.905331 CCATAGATATATTGGCCTGGGTCTA 59.095 44.000 3.32 5.05 0.00 2.59
269 270 6.183361 CCATAGATATATTGGCCTGGGTCTAC 60.183 46.154 3.32 0.00 0.00 2.59
270 271 5.029973 AGATATATTGGCCTGGGTCTACT 57.970 43.478 3.32 0.00 0.00 2.57
271 272 4.780021 AGATATATTGGCCTGGGTCTACTG 59.220 45.833 3.32 0.00 0.00 2.74
272 273 0.837272 TATTGGCCTGGGTCTACTGC 59.163 55.000 3.32 0.00 0.00 4.40
273 274 0.916358 ATTGGCCTGGGTCTACTGCT 60.916 55.000 3.32 0.00 0.00 4.24
274 275 1.133809 TTGGCCTGGGTCTACTGCTT 61.134 55.000 3.32 0.00 0.00 3.91
275 276 1.078143 GGCCTGGGTCTACTGCTTG 60.078 63.158 0.00 0.00 0.00 4.01
276 277 1.679898 GCCTGGGTCTACTGCTTGT 59.320 57.895 0.00 0.00 0.00 3.16
277 278 0.391793 GCCTGGGTCTACTGCTTGTC 60.392 60.000 0.00 0.00 0.00 3.18
278 279 1.270907 CCTGGGTCTACTGCTTGTCT 58.729 55.000 0.00 0.00 0.00 3.41
279 280 2.457598 CCTGGGTCTACTGCTTGTCTA 58.542 52.381 0.00 0.00 0.00 2.59
280 281 3.034635 CCTGGGTCTACTGCTTGTCTAT 58.965 50.000 0.00 0.00 0.00 1.98
281 282 3.181471 CCTGGGTCTACTGCTTGTCTATG 60.181 52.174 0.00 0.00 0.00 2.23
282 283 3.701542 CTGGGTCTACTGCTTGTCTATGA 59.298 47.826 0.00 0.00 0.00 2.15
283 284 4.093743 TGGGTCTACTGCTTGTCTATGAA 58.906 43.478 0.00 0.00 0.00 2.57
284 285 4.081642 TGGGTCTACTGCTTGTCTATGAAC 60.082 45.833 0.00 0.00 0.00 3.18
285 286 4.106197 GGTCTACTGCTTGTCTATGAACG 58.894 47.826 0.00 0.00 0.00 3.95
286 287 4.142447 GGTCTACTGCTTGTCTATGAACGA 60.142 45.833 0.00 0.00 0.00 3.85
287 288 5.399858 GTCTACTGCTTGTCTATGAACGAA 58.600 41.667 0.00 0.00 0.00 3.85
288 289 6.037098 GTCTACTGCTTGTCTATGAACGAAT 58.963 40.000 0.00 0.00 0.00 3.34
289 290 6.531948 GTCTACTGCTTGTCTATGAACGAATT 59.468 38.462 0.00 0.00 0.00 2.17
290 291 5.786401 ACTGCTTGTCTATGAACGAATTC 57.214 39.130 0.00 0.00 35.18 2.17
291 292 4.631813 ACTGCTTGTCTATGAACGAATTCC 59.368 41.667 0.00 0.00 33.49 3.01
292 293 4.574892 TGCTTGTCTATGAACGAATTCCA 58.425 39.130 0.00 0.00 33.49 3.53
293 294 5.185454 TGCTTGTCTATGAACGAATTCCAT 58.815 37.500 0.00 0.54 33.49 3.41
294 295 6.345298 TGCTTGTCTATGAACGAATTCCATA 58.655 36.000 0.00 1.73 33.49 2.74
295 296 6.479990 TGCTTGTCTATGAACGAATTCCATAG 59.520 38.462 17.51 17.51 33.49 2.23
296 297 6.073548 GCTTGTCTATGAACGAATTCCATAGG 60.074 42.308 20.77 11.63 33.49 2.57
297 298 6.479972 TGTCTATGAACGAATTCCATAGGT 57.520 37.500 20.77 4.37 33.49 3.08
298 299 6.884832 TGTCTATGAACGAATTCCATAGGTT 58.115 36.000 20.77 11.13 33.49 3.50
299 300 6.761242 TGTCTATGAACGAATTCCATAGGTTG 59.239 38.462 20.77 5.96 33.49 3.77
301 302 4.295141 TGAACGAATTCCATAGGTTGGT 57.705 40.909 0.00 0.00 46.52 3.67
302 303 4.006989 TGAACGAATTCCATAGGTTGGTG 58.993 43.478 0.00 0.00 46.52 4.17
303 304 2.365582 ACGAATTCCATAGGTTGGTGC 58.634 47.619 0.00 0.00 46.52 5.01
304 305 2.290641 ACGAATTCCATAGGTTGGTGCA 60.291 45.455 0.00 0.00 46.52 4.57
305 306 2.951642 CGAATTCCATAGGTTGGTGCAT 59.048 45.455 0.00 0.00 46.52 3.96
306 307 4.133820 CGAATTCCATAGGTTGGTGCATA 58.866 43.478 0.00 0.00 46.52 3.14
307 308 4.024048 CGAATTCCATAGGTTGGTGCATAC 60.024 45.833 0.00 0.00 46.52 2.39
308 309 2.613026 TCCATAGGTTGGTGCATACG 57.387 50.000 0.00 0.00 46.52 3.06
309 310 0.944386 CCATAGGTTGGTGCATACGC 59.056 55.000 0.00 0.00 40.99 4.42
310 311 1.745484 CCATAGGTTGGTGCATACGCA 60.745 52.381 0.00 0.00 40.75 5.24
318 319 2.910360 TGCATACGCAGGCATCCT 59.090 55.556 0.00 0.00 45.36 3.24
319 320 1.224315 TGCATACGCAGGCATCCTT 59.776 52.632 0.00 0.00 45.36 3.36
320 321 0.394216 TGCATACGCAGGCATCCTTT 60.394 50.000 0.00 0.00 45.36 3.11
321 322 0.029834 GCATACGCAGGCATCCTTTG 59.970 55.000 0.00 0.00 38.36 2.77
322 323 1.382522 CATACGCAGGCATCCTTTGT 58.617 50.000 0.00 0.00 0.00 2.83
323 324 1.064505 CATACGCAGGCATCCTTTGTG 59.935 52.381 0.00 0.00 0.00 3.33
324 325 0.036164 TACGCAGGCATCCTTTGTGT 59.964 50.000 0.00 0.00 38.85 3.72
325 326 0.823356 ACGCAGGCATCCTTTGTGTT 60.823 50.000 0.00 0.00 32.06 3.32
326 327 0.387622 CGCAGGCATCCTTTGTGTTG 60.388 55.000 0.00 0.00 0.00 3.33
327 328 0.037975 GCAGGCATCCTTTGTGTTGG 60.038 55.000 0.00 0.00 0.00 3.77
328 329 0.604578 CAGGCATCCTTTGTGTTGGG 59.395 55.000 0.00 0.00 0.00 4.12
329 330 0.542702 AGGCATCCTTTGTGTTGGGG 60.543 55.000 0.00 0.00 0.00 4.96
330 331 0.541764 GGCATCCTTTGTGTTGGGGA 60.542 55.000 0.00 0.00 0.00 4.81
331 332 1.560505 GCATCCTTTGTGTTGGGGAT 58.439 50.000 0.00 0.00 38.92 3.85
332 333 1.478105 GCATCCTTTGTGTTGGGGATC 59.522 52.381 0.00 0.00 36.55 3.36
333 334 2.806434 CATCCTTTGTGTTGGGGATCA 58.194 47.619 0.00 0.00 36.55 2.92
334 335 3.164268 CATCCTTTGTGTTGGGGATCAA 58.836 45.455 0.00 0.00 36.55 2.57
360 361 9.502091 ACAACTATTGTTTTTACTGATAGCTGA 57.498 29.630 0.00 0.00 42.22 4.26
361 362 9.979270 CAACTATTGTTTTTACTGATAGCTGAG 57.021 33.333 0.00 0.00 33.52 3.35
362 363 9.944376 AACTATTGTTTTTACTGATAGCTGAGA 57.056 29.630 0.00 0.00 31.37 3.27
363 364 9.944376 ACTATTGTTTTTACTGATAGCTGAGAA 57.056 29.630 0.00 0.00 0.00 2.87
367 368 9.950680 TTGTTTTTACTGATAGCTGAGAAAAAG 57.049 29.630 0.00 0.00 30.53 2.27
368 369 9.337396 TGTTTTTACTGATAGCTGAGAAAAAGA 57.663 29.630 0.00 9.75 30.53 2.52
369 370 9.818796 GTTTTTACTGATAGCTGAGAAAAAGAG 57.181 33.333 0.00 0.00 30.53 2.85
370 371 7.602517 TTTACTGATAGCTGAGAAAAAGAGC 57.397 36.000 0.00 0.00 0.00 4.09
371 372 5.419239 ACTGATAGCTGAGAAAAAGAGCT 57.581 39.130 0.00 0.00 45.12 4.09
372 373 5.418676 ACTGATAGCTGAGAAAAAGAGCTC 58.581 41.667 5.27 5.27 42.16 4.09
373 374 5.046735 ACTGATAGCTGAGAAAAAGAGCTCA 60.047 40.000 17.77 0.00 42.16 4.26
374 375 5.987098 TGATAGCTGAGAAAAAGAGCTCAT 58.013 37.500 17.77 0.00 42.16 2.90
375 376 6.413052 TGATAGCTGAGAAAAAGAGCTCATT 58.587 36.000 17.77 7.57 42.16 2.57
376 377 6.883217 TGATAGCTGAGAAAAAGAGCTCATTT 59.117 34.615 17.77 14.17 42.16 2.32
377 378 5.373981 AGCTGAGAAAAAGAGCTCATTTG 57.626 39.130 17.01 6.09 38.78 2.32
378 379 4.217983 AGCTGAGAAAAAGAGCTCATTTGG 59.782 41.667 17.01 7.26 38.78 3.28
379 380 4.617762 GCTGAGAAAAAGAGCTCATTTGGG 60.618 45.833 17.01 7.55 40.11 4.12
380 381 3.828451 TGAGAAAAAGAGCTCATTTGGGG 59.172 43.478 17.01 0.00 36.31 4.96
381 382 4.082125 GAGAAAAAGAGCTCATTTGGGGA 58.918 43.478 17.01 0.00 0.00 4.81
382 383 4.681484 AGAAAAAGAGCTCATTTGGGGAT 58.319 39.130 17.01 1.67 0.00 3.85
383 384 4.708909 AGAAAAAGAGCTCATTTGGGGATC 59.291 41.667 17.01 10.54 0.00 3.36
384 385 3.744940 AAAGAGCTCATTTGGGGATCA 57.255 42.857 17.77 0.00 0.00 2.92
385 386 2.725221 AGAGCTCATTTGGGGATCAC 57.275 50.000 17.77 0.00 0.00 3.06
386 387 1.134280 AGAGCTCATTTGGGGATCACG 60.134 52.381 17.77 0.00 0.00 4.35
387 388 0.911769 AGCTCATTTGGGGATCACGA 59.088 50.000 0.00 0.00 0.00 4.35
388 389 1.281867 AGCTCATTTGGGGATCACGAA 59.718 47.619 0.00 0.00 0.00 3.85
389 390 2.092212 AGCTCATTTGGGGATCACGAAT 60.092 45.455 0.00 0.00 0.00 3.34
390 391 2.689983 GCTCATTTGGGGATCACGAATT 59.310 45.455 0.00 0.00 0.00 2.17
391 392 3.243201 GCTCATTTGGGGATCACGAATTC 60.243 47.826 0.00 0.00 0.00 2.17
392 393 3.287222 TCATTTGGGGATCACGAATTCC 58.713 45.455 0.00 0.00 31.13 3.01
398 399 2.835027 GGGATCACGAATTCCCTGTAC 58.165 52.381 12.19 0.00 46.91 2.90
399 400 2.484947 GGGATCACGAATTCCCTGTACC 60.485 54.545 12.19 4.31 46.91 3.34
400 401 2.169769 GGATCACGAATTCCCTGTACCA 59.830 50.000 0.00 0.00 0.00 3.25
401 402 3.181454 GGATCACGAATTCCCTGTACCAT 60.181 47.826 0.00 0.00 0.00 3.55
402 403 3.992943 TCACGAATTCCCTGTACCATT 57.007 42.857 0.00 0.00 0.00 3.16
403 404 3.869065 TCACGAATTCCCTGTACCATTC 58.131 45.455 0.00 0.00 0.00 2.67
404 405 3.262151 TCACGAATTCCCTGTACCATTCA 59.738 43.478 0.00 0.00 0.00 2.57
405 406 3.623060 CACGAATTCCCTGTACCATTCAG 59.377 47.826 0.00 0.00 0.00 3.02
406 407 3.263425 ACGAATTCCCTGTACCATTCAGT 59.737 43.478 0.00 0.00 0.00 3.41
407 408 3.623060 CGAATTCCCTGTACCATTCAGTG 59.377 47.826 0.00 0.00 0.00 3.66
408 409 4.622933 CGAATTCCCTGTACCATTCAGTGA 60.623 45.833 0.00 0.00 0.00 3.41
409 410 4.927267 ATTCCCTGTACCATTCAGTGAA 57.073 40.909 8.27 8.27 34.86 3.18
410 411 3.981071 TCCCTGTACCATTCAGTGAAG 57.019 47.619 11.91 1.09 0.00 3.02
411 412 3.248024 TCCCTGTACCATTCAGTGAAGT 58.752 45.455 11.91 7.31 0.00 3.01
412 413 3.007940 TCCCTGTACCATTCAGTGAAGTG 59.992 47.826 11.91 9.45 0.00 3.16
413 414 3.338249 CCTGTACCATTCAGTGAAGTGG 58.662 50.000 22.47 22.47 37.74 4.00
414 415 3.007940 CCTGTACCATTCAGTGAAGTGGA 59.992 47.826 27.23 11.62 35.69 4.02
415 416 3.997021 CTGTACCATTCAGTGAAGTGGAC 59.003 47.826 27.23 20.09 35.69 4.02
416 417 2.568623 ACCATTCAGTGAAGTGGACC 57.431 50.000 27.23 0.00 35.69 4.46
417 418 1.270839 ACCATTCAGTGAAGTGGACCG 60.271 52.381 27.23 11.48 35.69 4.79
418 419 1.270839 CCATTCAGTGAAGTGGACCGT 60.271 52.381 20.83 0.00 33.53 4.83
419 420 2.028476 CCATTCAGTGAAGTGGACCGTA 60.028 50.000 20.83 0.00 33.53 4.02
420 421 2.806608 TTCAGTGAAGTGGACCGTAC 57.193 50.000 0.08 0.00 0.00 3.67
421 422 1.991121 TCAGTGAAGTGGACCGTACT 58.009 50.000 0.00 0.00 0.00 2.73
422 423 1.884579 TCAGTGAAGTGGACCGTACTC 59.115 52.381 0.00 0.00 0.00 2.59
423 424 1.887198 CAGTGAAGTGGACCGTACTCT 59.113 52.381 0.00 0.00 0.00 3.24
424 425 2.296471 CAGTGAAGTGGACCGTACTCTT 59.704 50.000 0.00 0.00 0.00 2.85
425 426 2.963782 AGTGAAGTGGACCGTACTCTTT 59.036 45.455 0.00 0.00 0.00 2.52
426 427 3.387050 AGTGAAGTGGACCGTACTCTTTT 59.613 43.478 0.00 0.00 0.00 2.27
427 428 3.739810 GTGAAGTGGACCGTACTCTTTTC 59.260 47.826 0.00 0.00 0.00 2.29
428 429 3.640029 TGAAGTGGACCGTACTCTTTTCT 59.360 43.478 0.00 0.00 0.00 2.52
429 430 3.938289 AGTGGACCGTACTCTTTTCTC 57.062 47.619 0.00 0.00 0.00 2.87
430 431 3.228453 AGTGGACCGTACTCTTTTCTCA 58.772 45.455 0.00 0.00 0.00 3.27
431 432 3.256136 AGTGGACCGTACTCTTTTCTCAG 59.744 47.826 0.00 0.00 0.00 3.35
432 433 3.255149 GTGGACCGTACTCTTTTCTCAGA 59.745 47.826 0.00 0.00 0.00 3.27
433 434 3.506455 TGGACCGTACTCTTTTCTCAGAG 59.494 47.826 0.00 0.00 45.29 3.35
446 447 9.487790 CTCTTTTCTCAGAGTTGTTAGAATCTT 57.512 33.333 0.00 0.00 36.32 2.40
450 451 8.709386 TTCTCAGAGTTGTTAGAATCTTATGC 57.291 34.615 0.00 0.00 0.00 3.14
451 452 8.072321 TCTCAGAGTTGTTAGAATCTTATGCT 57.928 34.615 0.00 0.00 0.00 3.79
452 453 8.535335 TCTCAGAGTTGTTAGAATCTTATGCTT 58.465 33.333 0.00 0.00 0.00 3.91
453 454 8.484641 TCAGAGTTGTTAGAATCTTATGCTTG 57.515 34.615 0.00 0.00 0.00 4.01
454 455 7.550551 TCAGAGTTGTTAGAATCTTATGCTTGG 59.449 37.037 0.00 0.00 0.00 3.61
455 456 7.335422 CAGAGTTGTTAGAATCTTATGCTTGGT 59.665 37.037 0.00 0.00 0.00 3.67
456 457 7.885399 AGAGTTGTTAGAATCTTATGCTTGGTT 59.115 33.333 0.00 0.00 0.00 3.67
457 458 7.820648 AGTTGTTAGAATCTTATGCTTGGTTG 58.179 34.615 0.00 0.00 0.00 3.77
458 459 6.194796 TGTTAGAATCTTATGCTTGGTTGC 57.805 37.500 0.00 0.00 0.00 4.17
460 461 6.208402 TGTTAGAATCTTATGCTTGGTTGCAA 59.792 34.615 0.00 0.00 46.61 4.08
461 462 5.726980 AGAATCTTATGCTTGGTTGCAAA 57.273 34.783 0.00 0.00 46.61 3.68
481 482 7.835822 TGCAAACTATAATTACCATGCTTTGT 58.164 30.769 10.15 0.00 33.87 2.83
482 483 7.758980 TGCAAACTATAATTACCATGCTTTGTG 59.241 33.333 10.15 0.00 33.87 3.33
496 497 5.289894 ATGCTTTGTGTGTAGAGCACCATT 61.290 41.667 0.00 0.00 46.62 3.16
529 530 2.089201 TGCTGCTCATCAACATCAAGG 58.911 47.619 0.00 0.00 0.00 3.61
531 532 2.950309 GCTGCTCATCAACATCAAGGAT 59.050 45.455 0.00 0.00 0.00 3.24
533 534 4.577693 GCTGCTCATCAACATCAAGGATAA 59.422 41.667 0.00 0.00 0.00 1.75
539 540 7.447374 TCATCAACATCAAGGATAACGTTTT 57.553 32.000 5.91 0.00 0.00 2.43
540 541 7.526608 TCATCAACATCAAGGATAACGTTTTC 58.473 34.615 5.91 8.34 0.00 2.29
542 543 8.664798 CATCAACATCAAGGATAACGTTTTCTA 58.335 33.333 16.62 0.00 0.00 2.10
549 550 4.248058 AGGATAACGTTTTCTAACCACCG 58.752 43.478 16.62 0.00 0.00 4.94
550 551 3.996363 GGATAACGTTTTCTAACCACCGT 59.004 43.478 16.62 0.00 0.00 4.83
567 568 5.754890 ACCACCGTATATGTATTTTCCGTTC 59.245 40.000 0.00 0.00 0.00 3.95
578 579 7.653767 TGTATTTTCCGTTCTTCTTTCTCTC 57.346 36.000 0.00 0.00 0.00 3.20
584 585 5.057149 TCCGTTCTTCTTTCTCTCCTTTTG 58.943 41.667 0.00 0.00 0.00 2.44
586 587 5.050023 CCGTTCTTCTTTCTCTCCTTTTGTC 60.050 44.000 0.00 0.00 0.00 3.18
589 590 7.517575 CGTTCTTCTTTCTCTCCTTTTGTCTTC 60.518 40.741 0.00 0.00 0.00 2.87
595 596 4.235372 TCTCTCCTTTTGTCTTCCCTTCT 58.765 43.478 0.00 0.00 0.00 2.85
596 597 4.660771 TCTCTCCTTTTGTCTTCCCTTCTT 59.339 41.667 0.00 0.00 0.00 2.52
651 1155 6.679327 AACTGAGTTTCTTAGTTTGGTGTC 57.321 37.500 0.00 0.00 37.05 3.67
652 1156 5.123936 ACTGAGTTTCTTAGTTTGGTGTCC 58.876 41.667 0.00 0.00 25.19 4.02
653 1157 5.105567 TGAGTTTCTTAGTTTGGTGTCCA 57.894 39.130 0.00 0.00 0.00 4.02
654 1158 5.502079 TGAGTTTCTTAGTTTGGTGTCCAA 58.498 37.500 0.00 0.00 42.29 3.53
655 1159 6.126409 TGAGTTTCTTAGTTTGGTGTCCAAT 58.874 36.000 1.97 0.00 43.55 3.16
656 1160 7.284074 TGAGTTTCTTAGTTTGGTGTCCAATA 58.716 34.615 1.97 0.00 43.55 1.90
657 1161 7.776030 TGAGTTTCTTAGTTTGGTGTCCAATAA 59.224 33.333 1.97 0.00 43.55 1.40
658 1162 8.706322 AGTTTCTTAGTTTGGTGTCCAATAAT 57.294 30.769 1.97 0.00 43.55 1.28
659 1163 8.793592 AGTTTCTTAGTTTGGTGTCCAATAATC 58.206 33.333 1.97 0.00 43.55 1.75
660 1164 6.978343 TCTTAGTTTGGTGTCCAATAATCG 57.022 37.500 1.97 0.00 43.55 3.34
687 1191 8.449251 TGTACGAGGTTAATTTTGTTAAGGTT 57.551 30.769 0.00 0.00 0.00 3.50
714 1218 8.134895 GTCATCTTATTTCTGGAGTCTACTCTG 58.865 40.741 9.84 4.22 42.48 3.35
722 1226 3.157881 TGGAGTCTACTCTGAACTGGTG 58.842 50.000 9.84 0.00 42.48 4.17
736 1240 1.341976 ACTGGTGGGCAAGTCTGTTTT 60.342 47.619 0.00 0.00 0.00 2.43
738 1242 2.955660 CTGGTGGGCAAGTCTGTTTTAA 59.044 45.455 0.00 0.00 0.00 1.52
739 1243 3.571590 TGGTGGGCAAGTCTGTTTTAAT 58.428 40.909 0.00 0.00 0.00 1.40
740 1244 4.730966 TGGTGGGCAAGTCTGTTTTAATA 58.269 39.130 0.00 0.00 0.00 0.98
741 1245 5.141182 TGGTGGGCAAGTCTGTTTTAATAA 58.859 37.500 0.00 0.00 0.00 1.40
742 1246 5.777732 TGGTGGGCAAGTCTGTTTTAATAAT 59.222 36.000 0.00 0.00 0.00 1.28
743 1247 6.268847 TGGTGGGCAAGTCTGTTTTAATAATT 59.731 34.615 0.00 0.00 0.00 1.40
744 1248 7.158697 GGTGGGCAAGTCTGTTTTAATAATTT 58.841 34.615 0.00 0.00 0.00 1.82
745 1249 7.117667 GGTGGGCAAGTCTGTTTTAATAATTTG 59.882 37.037 0.00 0.00 0.00 2.32
746 1250 7.655732 GTGGGCAAGTCTGTTTTAATAATTTGT 59.344 33.333 0.00 0.00 0.00 2.83
747 1251 7.655328 TGGGCAAGTCTGTTTTAATAATTTGTG 59.345 33.333 0.00 0.00 0.00 3.33
748 1252 7.655732 GGGCAAGTCTGTTTTAATAATTTGTGT 59.344 33.333 0.00 0.00 0.00 3.72
749 1253 9.685828 GGCAAGTCTGTTTTAATAATTTGTGTA 57.314 29.630 0.00 0.00 0.00 2.90
827 1447 2.412325 CCCGCAAACTAAATGTGACGAC 60.412 50.000 0.00 0.00 0.00 4.34
828 1448 2.412325 CCGCAAACTAAATGTGACGACC 60.412 50.000 0.00 0.00 0.00 4.79
834 1454 6.360329 CAAACTAAATGTGACGACCTTGTAC 58.640 40.000 0.00 0.00 0.00 2.90
902 1524 3.245984 TGGAAAGGGGTCATCTCTCTGTA 60.246 47.826 0.00 0.00 0.00 2.74
935 1557 1.261480 AGATGTCTCTGCGGAGTGTT 58.739 50.000 21.88 7.89 40.29 3.32
1269 1905 2.507769 CTGCTCATGCGCGACAGA 60.508 61.111 12.10 1.87 43.34 3.41
1331 1967 4.019771 TGTTGCTGATAGGACCATGTGTTA 60.020 41.667 0.00 0.00 0.00 2.41
1423 2080 0.813184 CGCAGCCATGTTTCCTTCAT 59.187 50.000 0.00 0.00 0.00 2.57
1594 2251 3.000925 GGTTCTACGTATCATTGGTTGCG 59.999 47.826 0.00 0.00 0.00 4.85
1647 2304 4.475016 AGCAACCTTACCCATGTCTCTATT 59.525 41.667 0.00 0.00 0.00 1.73
1777 2447 5.472478 ACAATAGCGGATCATCGTCTACTTA 59.528 40.000 0.00 0.00 0.00 2.24
1848 2631 7.171678 CCTGAGGTACAAACTAGTTCTTCTTTG 59.828 40.741 8.95 4.89 0.00 2.77
1857 2763 9.713740 CAAACTAGTTCTTCTTTGCATCATATC 57.286 33.333 8.95 0.00 0.00 1.63
1858 2764 8.443953 AACTAGTTCTTCTTTGCATCATATCC 57.556 34.615 1.12 0.00 0.00 2.59
1859 2765 7.568349 ACTAGTTCTTCTTTGCATCATATCCA 58.432 34.615 0.00 0.00 0.00 3.41
1860 2766 8.216423 ACTAGTTCTTCTTTGCATCATATCCAT 58.784 33.333 0.00 0.00 0.00 3.41
1861 2767 9.716531 CTAGTTCTTCTTTGCATCATATCCATA 57.283 33.333 0.00 0.00 0.00 2.74
1862 2768 8.388484 AGTTCTTCTTTGCATCATATCCATAC 57.612 34.615 0.00 0.00 0.00 2.39
1863 2769 7.994911 AGTTCTTCTTTGCATCATATCCATACA 59.005 33.333 0.00 0.00 0.00 2.29
1864 2770 8.623903 GTTCTTCTTTGCATCATATCCATACAA 58.376 33.333 0.00 0.00 0.00 2.41
1865 2771 8.387190 TCTTCTTTGCATCATATCCATACAAG 57.613 34.615 0.00 0.00 0.00 3.16
1866 2772 6.564709 TCTTTGCATCATATCCATACAAGC 57.435 37.500 0.00 0.00 0.00 4.01
1867 2773 5.474532 TCTTTGCATCATATCCATACAAGCC 59.525 40.000 0.00 0.00 0.00 4.35
1868 2774 4.645863 TGCATCATATCCATACAAGCCT 57.354 40.909 0.00 0.00 0.00 4.58
1869 2775 5.760484 TGCATCATATCCATACAAGCCTA 57.240 39.130 0.00 0.00 0.00 3.93
1870 2776 5.737860 TGCATCATATCCATACAAGCCTAG 58.262 41.667 0.00 0.00 0.00 3.02
1871 2777 5.484998 TGCATCATATCCATACAAGCCTAGA 59.515 40.000 0.00 0.00 0.00 2.43
1872 2778 6.157471 TGCATCATATCCATACAAGCCTAGAT 59.843 38.462 0.00 0.00 0.00 1.98
1873 2779 6.482641 GCATCATATCCATACAAGCCTAGATG 59.517 42.308 0.00 0.00 0.00 2.90
1874 2780 7.634429 GCATCATATCCATACAAGCCTAGATGA 60.634 40.741 0.00 0.00 32.06 2.92
1875 2781 7.797121 TCATATCCATACAAGCCTAGATGAA 57.203 36.000 0.00 0.00 0.00 2.57
1876 2782 8.384693 TCATATCCATACAAGCCTAGATGAAT 57.615 34.615 0.00 0.00 0.00 2.57
1877 2783 9.492730 TCATATCCATACAAGCCTAGATGAATA 57.507 33.333 0.00 0.00 0.00 1.75
1962 2872 2.033236 TCGCGTTTTGAGCTTACTTGTG 60.033 45.455 5.77 0.00 0.00 3.33
1967 2878 5.277154 GCGTTTTGAGCTTACTTGTGTTCTA 60.277 40.000 0.00 0.00 0.00 2.10
2009 2927 9.585099 TTATTTTAACAAGCTAGCATGGAAATG 57.415 29.630 24.97 13.85 0.00 2.32
2277 3197 7.932335 TGTATATACCATTGTTTTTAAGGCGG 58.068 34.615 10.38 0.00 0.00 6.13
2278 3198 7.556996 TGTATATACCATTGTTTTTAAGGCGGT 59.443 33.333 10.38 0.00 0.00 5.68
2279 3199 9.054922 GTATATACCATTGTTTTTAAGGCGGTA 57.945 33.333 1.02 0.00 32.63 4.02
2280 3200 6.837471 ATACCATTGTTTTTAAGGCGGTAA 57.163 33.333 0.00 0.00 31.90 2.85
2281 3201 5.128992 ACCATTGTTTTTAAGGCGGTAAG 57.871 39.130 0.00 0.00 0.00 2.34
2282 3202 4.021807 ACCATTGTTTTTAAGGCGGTAAGG 60.022 41.667 0.00 0.00 0.00 2.69
2290 3210 2.894919 GGCGGTAAGGCGACCTAA 59.105 61.111 9.52 0.00 37.34 2.69
2291 3211 1.227176 GGCGGTAAGGCGACCTAAG 60.227 63.158 9.52 0.00 37.34 2.18
2292 3212 1.227176 GCGGTAAGGCGACCTAAGG 60.227 63.158 9.52 0.00 37.34 2.69
2293 3213 1.227176 CGGTAAGGCGACCTAAGGC 60.227 63.158 9.52 0.00 37.34 4.35
2294 3214 1.227176 GGTAAGGCGACCTAAGGCG 60.227 63.158 4.54 0.00 39.33 5.52
2295 3215 1.669999 GGTAAGGCGACCTAAGGCGA 61.670 60.000 4.41 0.00 39.33 5.54
2296 3216 0.248949 GTAAGGCGACCTAAGGCGAG 60.249 60.000 4.41 0.00 39.33 5.03
2297 3217 2.012902 TAAGGCGACCTAAGGCGAGC 62.013 60.000 4.41 0.00 39.33 5.03
2298 3218 4.143333 GGCGACCTAAGGCGAGCA 62.143 66.667 4.41 0.00 0.00 4.26
2299 3219 2.886124 GCGACCTAAGGCGAGCAC 60.886 66.667 4.41 0.00 0.00 4.40
2300 3220 2.202756 CGACCTAAGGCGAGCACC 60.203 66.667 0.00 0.00 0.00 5.01
2301 3221 2.978824 GACCTAAGGCGAGCACCA 59.021 61.111 0.00 0.00 0.00 4.17
2302 3222 1.448013 GACCTAAGGCGAGCACCAC 60.448 63.158 0.00 0.00 0.00 4.16
2303 3223 2.125106 CCTAAGGCGAGCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
2304 3224 2.125106 CTAAGGCGAGCACCACCC 60.125 66.667 0.00 0.00 0.00 4.61
2305 3225 4.077184 TAAGGCGAGCACCACCCG 62.077 66.667 0.00 0.00 0.00 5.28
2312 3232 3.775654 AGCACCACCCGCTCTAGC 61.776 66.667 0.00 0.00 33.35 3.42
2333 3253 1.981256 CCTAAGGCGGGCATATTTGT 58.019 50.000 3.78 0.00 0.00 2.83
2334 3254 3.134574 CCTAAGGCGGGCATATTTGTA 57.865 47.619 3.78 0.00 0.00 2.41
2335 3255 3.482436 CCTAAGGCGGGCATATTTGTAA 58.518 45.455 3.78 0.00 0.00 2.41
2336 3256 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
2337 3257 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
2338 3258 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
2339 3259 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
2340 3260 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
2341 3261 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
2342 3262 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
2343 3263 1.600413 GGCATATTTGTAAGGCGCTGC 60.600 52.381 7.64 4.69 0.00 5.25
2376 3296 4.208632 CCTAAGCGTCCAAGGCAG 57.791 61.111 0.00 0.00 0.00 4.85
2377 3297 1.450312 CCTAAGCGTCCAAGGCAGG 60.450 63.158 0.00 0.00 0.00 4.85
2378 3298 1.596934 CTAAGCGTCCAAGGCAGGA 59.403 57.895 0.00 0.00 34.64 3.86
2392 3312 2.785713 GCAGGACGCCTTAAAAACAA 57.214 45.000 0.00 0.00 32.94 2.83
2393 3313 3.297830 GCAGGACGCCTTAAAAACAAT 57.702 42.857 0.00 0.00 32.94 2.71
2394 3314 2.986479 GCAGGACGCCTTAAAAACAATG 59.014 45.455 0.00 0.00 32.94 2.82
2395 3315 3.574614 CAGGACGCCTTAAAAACAATGG 58.425 45.455 0.00 0.00 0.00 3.16
2396 3316 3.005367 CAGGACGCCTTAAAAACAATGGT 59.995 43.478 0.00 0.00 0.00 3.55
2483 3426 6.089551 CGATTATGCAGGAGGAATTTAGTACG 59.910 42.308 0.00 0.00 0.00 3.67
2575 3523 2.611292 GCATCGAGAGGGTCAAAATCTG 59.389 50.000 0.00 0.00 0.00 2.90
2586 3534 3.248266 GTCAAAATCTGCTGCCATGAAC 58.752 45.455 0.00 0.00 0.00 3.18
2600 3548 3.368248 CCATGAACATGATCCAAGGGTT 58.632 45.455 15.21 0.00 41.20 4.11
2636 3584 1.568612 CGTTGCAGCTGATTGTCGGT 61.569 55.000 20.43 0.00 0.00 4.69
2677 3625 4.560128 GAGCATCGCTGATCTATGGTAAA 58.440 43.478 0.00 0.00 39.88 2.01
2723 3672 3.030652 CAACCGTTGGTCAGTGCC 58.969 61.111 3.10 0.00 33.12 5.01
2726 3675 2.280524 CCGTTGGTCAGTGCCGAA 60.281 61.111 0.00 0.00 0.00 4.30
2785 3735 1.877443 GTTAACGACACAAGGGCATGT 59.123 47.619 0.00 0.00 0.00 3.21
2803 3753 4.808558 CATGTTTTAGACAATGGGTGTGG 58.191 43.478 0.00 0.00 41.96 4.17
2851 3801 5.185454 TCCACATGTGATGGTTAATCTGAC 58.815 41.667 27.46 0.00 38.47 3.51
2908 3858 7.803189 AGTTCTTTGAAAACGCTATGTAATGTG 59.197 33.333 0.00 0.00 0.00 3.21
2909 3859 7.428282 TCTTTGAAAACGCTATGTAATGTGA 57.572 32.000 0.00 0.00 0.00 3.58
2910 3860 7.518161 TCTTTGAAAACGCTATGTAATGTGAG 58.482 34.615 0.00 0.00 0.00 3.51
2911 3861 6.795098 TTGAAAACGCTATGTAATGTGAGT 57.205 33.333 0.00 0.00 0.00 3.41
2912 3862 6.795098 TGAAAACGCTATGTAATGTGAGTT 57.205 33.333 0.00 0.00 0.00 3.01
2913 3863 6.827641 TGAAAACGCTATGTAATGTGAGTTC 58.172 36.000 0.00 0.00 0.00 3.01
2914 3864 6.649141 TGAAAACGCTATGTAATGTGAGTTCT 59.351 34.615 0.00 0.00 0.00 3.01
2915 3865 6.408858 AAACGCTATGTAATGTGAGTTCTG 57.591 37.500 0.00 0.00 0.00 3.02
2916 3866 5.324784 ACGCTATGTAATGTGAGTTCTGA 57.675 39.130 0.00 0.00 0.00 3.27
2917 3867 5.720202 ACGCTATGTAATGTGAGTTCTGAA 58.280 37.500 0.00 0.00 0.00 3.02
2932 3882 9.552114 GTGAGTTCTGAAATCATGTTTTAGATG 57.448 33.333 21.46 0.00 0.00 2.90
2939 3889 9.123902 CTGAAATCATGTTTTAGATGATGGGTA 57.876 33.333 1.75 0.00 39.21 3.69
2945 3903 8.439172 TCATGTTTTAGATGATGGGTATGATCA 58.561 33.333 0.00 0.00 30.34 2.92
2987 3945 4.342092 TGATGATTGATCCGAGCTAGTTCA 59.658 41.667 7.41 0.00 0.00 3.18
2990 3948 3.355626 TTGATCCGAGCTAGTTCATCG 57.644 47.619 7.41 4.87 36.24 3.84
2993 3951 1.746470 TCCGAGCTAGTTCATCGTCA 58.254 50.000 7.41 0.00 34.71 4.35
3013 3971 6.374613 TCGTCATAGACTAGTTGAGTGTCATT 59.625 38.462 0.00 0.00 39.06 2.57
3014 3972 7.030165 CGTCATAGACTAGTTGAGTGTCATTT 58.970 38.462 0.00 0.00 39.06 2.32
3015 3973 7.008719 CGTCATAGACTAGTTGAGTGTCATTTG 59.991 40.741 0.00 0.00 39.06 2.32
3016 3974 7.815068 GTCATAGACTAGTTGAGTGTCATTTGT 59.185 37.037 0.00 0.00 39.06 2.83
3017 3975 7.814587 TCATAGACTAGTTGAGTGTCATTTGTG 59.185 37.037 0.00 0.00 39.06 3.33
3047 4237 7.606456 TCATTTAAGAAACTGTGTGTAGGATCC 59.394 37.037 2.48 2.48 0.00 3.36
3054 4244 1.486310 TGTGTGTAGGATCCAGATGCC 59.514 52.381 15.82 0.00 0.00 4.40
3078 4302 5.277974 CCTGTGTTCTCGTTGTTTCATTCAT 60.278 40.000 0.00 0.00 0.00 2.57
3094 4318 8.706035 GTTTCATTCATCTCAAGACCAATTTTG 58.294 33.333 0.00 0.00 0.00 2.44
3112 4336 7.012232 CCAATTTTGGCAACTTTAACATGACTT 59.988 33.333 0.00 0.00 42.21 3.01
3130 4354 6.008696 TGACTTTCTTCTTCAAACCCCTAA 57.991 37.500 0.00 0.00 0.00 2.69
3131 4355 6.062095 TGACTTTCTTCTTCAAACCCCTAAG 58.938 40.000 0.00 0.00 0.00 2.18
3132 4356 4.827835 ACTTTCTTCTTCAAACCCCTAAGC 59.172 41.667 0.00 0.00 0.00 3.09
3133 4357 4.724279 TTCTTCTTCAAACCCCTAAGCT 57.276 40.909 0.00 0.00 0.00 3.74
3134 4358 4.021102 TCTTCTTCAAACCCCTAAGCTG 57.979 45.455 0.00 0.00 0.00 4.24
3135 4359 2.200373 TCTTCAAACCCCTAAGCTGC 57.800 50.000 0.00 0.00 0.00 5.25
3136 4360 1.705186 TCTTCAAACCCCTAAGCTGCT 59.295 47.619 0.00 0.00 0.00 4.24
3137 4361 1.815003 CTTCAAACCCCTAAGCTGCTG 59.185 52.381 1.35 0.00 0.00 4.41
3138 4362 0.609131 TCAAACCCCTAAGCTGCTGC 60.609 55.000 1.35 7.62 40.05 5.25
3180 4410 7.288852 TGTTTCAGATATTTGGAACCAAGGAAA 59.711 33.333 13.44 8.23 36.00 3.13
3248 4481 5.649782 TGGCAATTTTTCAAGAGAGATCC 57.350 39.130 0.00 0.00 0.00 3.36
3268 4501 2.552743 CCCTTGTCTTTTCTTTCGGGTC 59.447 50.000 0.00 0.00 0.00 4.46
3269 4502 2.552743 CCTTGTCTTTTCTTTCGGGTCC 59.447 50.000 0.00 0.00 0.00 4.46
3276 4509 1.784301 TTCTTTCGGGTCCCCATGCA 61.784 55.000 1.00 0.00 35.37 3.96
3293 4526 0.752658 GCACCCCTTTCTTTTGCACT 59.247 50.000 0.00 0.00 33.24 4.40
3635 4980 3.800863 GACAGCGCCGAGTCGAGA 61.801 66.667 15.64 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.396324 GGTGGGGAAAAGAAATCAGTTTTGT 60.396 40.000 0.00 0.00 0.00 2.83
1 2 5.056480 GGTGGGGAAAAGAAATCAGTTTTG 58.944 41.667 0.00 0.00 0.00 2.44
3 4 3.646162 GGGTGGGGAAAAGAAATCAGTTT 59.354 43.478 0.00 0.00 0.00 2.66
5 6 2.178984 TGGGTGGGGAAAAGAAATCAGT 59.821 45.455 0.00 0.00 0.00 3.41
8 9 3.006859 CAGTTGGGTGGGGAAAAGAAATC 59.993 47.826 0.00 0.00 0.00 2.17
9 10 2.972021 CAGTTGGGTGGGGAAAAGAAAT 59.028 45.455 0.00 0.00 0.00 2.17
10 11 2.292587 ACAGTTGGGTGGGGAAAAGAAA 60.293 45.455 0.00 0.00 0.00 2.52
11 12 1.289530 ACAGTTGGGTGGGGAAAAGAA 59.710 47.619 0.00 0.00 0.00 2.52
58 59 1.859080 GGAATCATCCGAAGCACGTAC 59.141 52.381 0.00 0.00 40.78 3.67
60 61 3.065575 GGAATCATCCGAAGCACGT 57.934 52.632 3.00 0.00 40.78 4.49
95 96 2.918600 CGCGCGGTTATATATAGCAACA 59.081 45.455 24.84 0.00 0.00 3.33
107 108 1.570347 ATCTGCAAAACGCGCGGTTA 61.570 50.000 35.52 18.90 46.97 2.85
108 109 2.780149 GATCTGCAAAACGCGCGGTT 62.780 55.000 35.22 32.83 46.97 4.44
112 113 1.061799 CTGTGATCTGCAAAACGCGC 61.062 55.000 5.73 0.00 46.97 6.86
114 115 0.109597 CCCTGTGATCTGCAAAACGC 60.110 55.000 0.00 0.00 42.89 4.84
115 116 0.523072 CCCCTGTGATCTGCAAAACG 59.477 55.000 0.00 0.00 0.00 3.60
116 117 1.270550 CACCCCTGTGATCTGCAAAAC 59.729 52.381 0.00 0.00 45.76 2.43
117 118 1.619654 CACCCCTGTGATCTGCAAAA 58.380 50.000 0.00 0.00 45.76 2.44
118 119 0.251297 CCACCCCTGTGATCTGCAAA 60.251 55.000 0.00 0.00 45.76 3.68
120 121 1.426251 AACCACCCCTGTGATCTGCA 61.426 55.000 0.00 0.00 45.76 4.41
121 122 0.678048 GAACCACCCCTGTGATCTGC 60.678 60.000 0.00 0.00 45.76 4.26
124 125 1.078426 CGGAACCACCCCTGTGATC 60.078 63.158 0.00 0.00 45.76 2.92
126 127 1.537889 ATCGGAACCACCCCTGTGA 60.538 57.895 0.00 0.00 45.76 3.58
127 128 1.078426 GATCGGAACCACCCCTGTG 60.078 63.158 0.00 0.00 42.39 3.66
129 130 1.686325 ATCGATCGGAACCACCCCTG 61.686 60.000 16.41 0.00 34.64 4.45
131 132 0.107361 AAATCGATCGGAACCACCCC 60.107 55.000 16.41 0.00 34.64 4.95
133 134 2.081462 ACAAAATCGATCGGAACCACC 58.919 47.619 16.41 0.00 0.00 4.61
134 135 3.488489 CAACAAAATCGATCGGAACCAC 58.512 45.455 16.41 0.00 0.00 4.16
135 136 2.486203 CCAACAAAATCGATCGGAACCA 59.514 45.455 16.41 0.00 0.00 3.67
136 137 2.159435 CCCAACAAAATCGATCGGAACC 60.159 50.000 16.41 0.00 0.00 3.62
137 138 2.745281 TCCCAACAAAATCGATCGGAAC 59.255 45.455 16.41 0.00 0.00 3.62
140 141 2.095853 CAGTCCCAACAAAATCGATCGG 59.904 50.000 16.41 0.47 0.00 4.18
141 142 2.095853 CCAGTCCCAACAAAATCGATCG 59.904 50.000 9.36 9.36 0.00 3.69
142 143 3.343617 TCCAGTCCCAACAAAATCGATC 58.656 45.455 0.00 0.00 0.00 3.69
144 145 2.940994 TCCAGTCCCAACAAAATCGA 57.059 45.000 0.00 0.00 0.00 3.59
145 146 2.415893 GCATCCAGTCCCAACAAAATCG 60.416 50.000 0.00 0.00 0.00 3.34
146 147 2.827921 AGCATCCAGTCCCAACAAAATC 59.172 45.455 0.00 0.00 0.00 2.17
147 148 2.893424 AGCATCCAGTCCCAACAAAAT 58.107 42.857 0.00 0.00 0.00 1.82
148 149 2.380064 AGCATCCAGTCCCAACAAAA 57.620 45.000 0.00 0.00 0.00 2.44
150 151 2.308570 ACATAGCATCCAGTCCCAACAA 59.691 45.455 0.00 0.00 0.00 2.83
152 153 2.684881 CAACATAGCATCCAGTCCCAAC 59.315 50.000 0.00 0.00 0.00 3.77
153 154 2.945440 GCAACATAGCATCCAGTCCCAA 60.945 50.000 0.00 0.00 0.00 4.12
154 155 1.408683 GCAACATAGCATCCAGTCCCA 60.409 52.381 0.00 0.00 0.00 4.37
155 156 1.133976 AGCAACATAGCATCCAGTCCC 60.134 52.381 0.00 0.00 36.85 4.46
156 157 1.945394 CAGCAACATAGCATCCAGTCC 59.055 52.381 0.00 0.00 36.85 3.85
157 158 1.332997 GCAGCAACATAGCATCCAGTC 59.667 52.381 0.00 0.00 36.85 3.51
158 159 1.064906 AGCAGCAACATAGCATCCAGT 60.065 47.619 0.00 0.00 36.85 4.00
159 160 1.333931 CAGCAGCAACATAGCATCCAG 59.666 52.381 0.00 0.00 36.85 3.86
160 161 1.385528 CAGCAGCAACATAGCATCCA 58.614 50.000 0.00 0.00 36.85 3.41
161 162 0.030369 GCAGCAGCAACATAGCATCC 59.970 55.000 0.00 0.00 41.58 3.51
162 163 1.022735 AGCAGCAGCAACATAGCATC 58.977 50.000 3.17 0.00 45.49 3.91
163 164 0.738975 CAGCAGCAGCAACATAGCAT 59.261 50.000 3.17 0.00 45.49 3.79
164 165 1.929806 GCAGCAGCAGCAACATAGCA 61.930 55.000 4.63 0.00 45.49 3.49
165 166 1.226603 GCAGCAGCAGCAACATAGC 60.227 57.895 4.63 0.00 45.49 2.97
166 167 0.098905 CAGCAGCAGCAGCAACATAG 59.901 55.000 12.92 0.00 45.49 2.23
167 168 2.177044 CAGCAGCAGCAGCAACATA 58.823 52.632 12.92 0.00 45.49 2.29
168 169 2.962569 CAGCAGCAGCAGCAACAT 59.037 55.556 12.92 0.00 45.49 2.71
185 186 4.518211 ACTTGGAAGATTATATGCAGCTGC 59.482 41.667 31.89 31.89 42.50 5.25
186 187 5.996513 AGACTTGGAAGATTATATGCAGCTG 59.003 40.000 10.11 10.11 0.00 4.24
187 188 6.185114 AGACTTGGAAGATTATATGCAGCT 57.815 37.500 0.00 0.00 0.00 4.24
188 189 5.411053 GGAGACTTGGAAGATTATATGCAGC 59.589 44.000 0.00 0.00 0.00 5.25
189 190 6.528321 TGGAGACTTGGAAGATTATATGCAG 58.472 40.000 0.00 0.00 0.00 4.41
190 191 6.499106 TGGAGACTTGGAAGATTATATGCA 57.501 37.500 0.00 0.00 0.00 3.96
191 192 7.807977 TTTGGAGACTTGGAAGATTATATGC 57.192 36.000 0.00 0.00 0.00 3.14
192 193 9.347240 ACATTTGGAGACTTGGAAGATTATATG 57.653 33.333 0.00 0.00 0.00 1.78
193 194 9.347240 CACATTTGGAGACTTGGAAGATTATAT 57.653 33.333 0.00 0.00 0.00 0.86
194 195 8.328758 ACACATTTGGAGACTTGGAAGATTATA 58.671 33.333 0.00 0.00 0.00 0.98
195 196 7.177878 ACACATTTGGAGACTTGGAAGATTAT 58.822 34.615 0.00 0.00 0.00 1.28
196 197 6.542821 ACACATTTGGAGACTTGGAAGATTA 58.457 36.000 0.00 0.00 0.00 1.75
197 198 5.388654 ACACATTTGGAGACTTGGAAGATT 58.611 37.500 0.00 0.00 0.00 2.40
198 199 4.990526 ACACATTTGGAGACTTGGAAGAT 58.009 39.130 0.00 0.00 0.00 2.40
199 200 4.437682 ACACATTTGGAGACTTGGAAGA 57.562 40.909 0.00 0.00 0.00 2.87
200 201 5.551233 TCTACACATTTGGAGACTTGGAAG 58.449 41.667 0.00 0.00 37.84 3.46
201 202 5.560722 TCTACACATTTGGAGACTTGGAA 57.439 39.130 0.00 0.00 37.84 3.53
202 203 5.762179 ATCTACACATTTGGAGACTTGGA 57.238 39.130 0.00 0.00 46.13 3.53
203 204 8.204160 TGTATATCTACACATTTGGAGACTTGG 58.796 37.037 0.00 0.00 46.13 3.61
204 205 9.770097 ATGTATATCTACACATTTGGAGACTTG 57.230 33.333 0.00 0.00 46.13 3.16
209 210 9.129209 CGTGTATGTATATCTACACATTTGGAG 57.871 37.037 19.51 0.00 45.09 3.86
210 211 7.597369 GCGTGTATGTATATCTACACATTTGGA 59.403 37.037 19.51 0.00 45.09 3.53
211 212 7.383843 TGCGTGTATGTATATCTACACATTTGG 59.616 37.037 19.51 9.76 45.09 3.28
212 213 8.293114 TGCGTGTATGTATATCTACACATTTG 57.707 34.615 19.51 9.99 45.09 2.32
213 214 8.141909 ACTGCGTGTATGTATATCTACACATTT 58.858 33.333 19.51 5.94 45.09 2.32
214 215 7.658261 ACTGCGTGTATGTATATCTACACATT 58.342 34.615 19.51 5.71 45.09 2.71
215 216 7.215719 ACTGCGTGTATGTATATCTACACAT 57.784 36.000 19.51 8.33 45.09 3.21
216 217 6.628919 ACTGCGTGTATGTATATCTACACA 57.371 37.500 19.51 2.34 45.09 3.72
217 218 7.804712 ACTACTGCGTGTATGTATATCTACAC 58.195 38.462 13.71 13.71 40.57 2.90
218 219 7.974482 ACTACTGCGTGTATGTATATCTACA 57.026 36.000 0.00 0.00 41.92 2.74
219 220 7.961827 GGAACTACTGCGTGTATGTATATCTAC 59.038 40.741 0.00 0.00 0.00 2.59
220 221 7.662669 TGGAACTACTGCGTGTATGTATATCTA 59.337 37.037 0.00 0.00 0.00 1.98
221 222 6.489022 TGGAACTACTGCGTGTATGTATATCT 59.511 38.462 0.00 0.00 0.00 1.98
222 223 6.675026 TGGAACTACTGCGTGTATGTATATC 58.325 40.000 0.00 0.00 0.00 1.63
223 224 6.644248 TGGAACTACTGCGTGTATGTATAT 57.356 37.500 0.00 0.00 0.00 0.86
224 225 6.644248 ATGGAACTACTGCGTGTATGTATA 57.356 37.500 0.00 0.00 0.00 1.47
225 226 4.994907 TGGAACTACTGCGTGTATGTAT 57.005 40.909 0.00 0.00 0.00 2.29
226 227 4.994907 ATGGAACTACTGCGTGTATGTA 57.005 40.909 0.00 0.00 0.00 2.29
227 228 3.887621 ATGGAACTACTGCGTGTATGT 57.112 42.857 0.00 0.00 0.00 2.29
228 229 5.183014 TCTATGGAACTACTGCGTGTATG 57.817 43.478 0.00 0.00 0.00 2.39
229 230 7.704578 ATATCTATGGAACTACTGCGTGTAT 57.295 36.000 0.00 0.00 0.00 2.29
230 231 8.803397 ATATATCTATGGAACTACTGCGTGTA 57.197 34.615 0.00 0.00 0.00 2.90
231 232 7.704578 ATATATCTATGGAACTACTGCGTGT 57.295 36.000 0.00 0.00 0.00 4.49
232 233 7.489435 CCAATATATCTATGGAACTACTGCGTG 59.511 40.741 0.00 0.00 0.00 5.34
233 234 7.548097 CCAATATATCTATGGAACTACTGCGT 58.452 38.462 0.00 0.00 0.00 5.24
234 235 6.477033 GCCAATATATCTATGGAACTACTGCG 59.523 42.308 6.17 0.00 0.00 5.18
235 236 6.763610 GGCCAATATATCTATGGAACTACTGC 59.236 42.308 0.00 0.00 0.00 4.40
236 237 7.984050 CAGGCCAATATATCTATGGAACTACTG 59.016 40.741 5.01 2.91 0.00 2.74
237 238 7.126421 CCAGGCCAATATATCTATGGAACTACT 59.874 40.741 5.01 0.00 0.00 2.57
238 239 7.275920 CCAGGCCAATATATCTATGGAACTAC 58.724 42.308 5.01 0.00 0.00 2.73
239 240 6.386927 CCCAGGCCAATATATCTATGGAACTA 59.613 42.308 5.01 0.00 0.00 2.24
240 241 5.192522 CCCAGGCCAATATATCTATGGAACT 59.807 44.000 5.01 1.31 0.00 3.01
241 242 5.044846 ACCCAGGCCAATATATCTATGGAAC 60.045 44.000 5.01 0.00 0.00 3.62
242 243 5.108026 ACCCAGGCCAATATATCTATGGAA 58.892 41.667 5.01 0.00 0.00 3.53
243 244 4.709944 ACCCAGGCCAATATATCTATGGA 58.290 43.478 5.01 0.00 0.00 3.41
244 245 4.723789 AGACCCAGGCCAATATATCTATGG 59.276 45.833 5.01 0.00 0.00 2.74
245 246 5.965033 AGACCCAGGCCAATATATCTATG 57.035 43.478 5.01 0.00 0.00 2.23
246 247 6.613271 CAGTAGACCCAGGCCAATATATCTAT 59.387 42.308 5.01 0.00 0.00 1.98
247 248 5.958380 CAGTAGACCCAGGCCAATATATCTA 59.042 44.000 5.01 1.24 0.00 1.98
248 249 4.780021 CAGTAGACCCAGGCCAATATATCT 59.220 45.833 5.01 2.31 0.00 1.98
249 250 4.624125 GCAGTAGACCCAGGCCAATATATC 60.624 50.000 5.01 0.00 0.00 1.63
250 251 3.264450 GCAGTAGACCCAGGCCAATATAT 59.736 47.826 5.01 0.00 0.00 0.86
251 252 2.637872 GCAGTAGACCCAGGCCAATATA 59.362 50.000 5.01 0.00 0.00 0.86
252 253 1.421646 GCAGTAGACCCAGGCCAATAT 59.578 52.381 5.01 0.00 0.00 1.28
253 254 0.837272 GCAGTAGACCCAGGCCAATA 59.163 55.000 5.01 0.00 0.00 1.90
254 255 0.916358 AGCAGTAGACCCAGGCCAAT 60.916 55.000 5.01 0.00 0.00 3.16
255 256 1.133809 AAGCAGTAGACCCAGGCCAA 61.134 55.000 5.01 0.00 0.00 4.52
256 257 1.538876 AAGCAGTAGACCCAGGCCA 60.539 57.895 5.01 0.00 0.00 5.36
257 258 1.078143 CAAGCAGTAGACCCAGGCC 60.078 63.158 0.00 0.00 0.00 5.19
258 259 0.391793 GACAAGCAGTAGACCCAGGC 60.392 60.000 0.00 0.00 0.00 4.85
259 260 1.270907 AGACAAGCAGTAGACCCAGG 58.729 55.000 0.00 0.00 0.00 4.45
260 261 3.701542 TCATAGACAAGCAGTAGACCCAG 59.298 47.826 0.00 0.00 0.00 4.45
261 262 3.708451 TCATAGACAAGCAGTAGACCCA 58.292 45.455 0.00 0.00 0.00 4.51
262 263 4.434520 GTTCATAGACAAGCAGTAGACCC 58.565 47.826 0.00 0.00 0.00 4.46
263 264 4.106197 CGTTCATAGACAAGCAGTAGACC 58.894 47.826 0.00 0.00 0.00 3.85
264 265 4.982999 TCGTTCATAGACAAGCAGTAGAC 58.017 43.478 0.00 0.00 0.00 2.59
265 266 5.638596 TTCGTTCATAGACAAGCAGTAGA 57.361 39.130 0.00 0.00 0.00 2.59
266 267 6.019479 GGAATTCGTTCATAGACAAGCAGTAG 60.019 42.308 0.00 0.00 0.00 2.57
267 268 5.810587 GGAATTCGTTCATAGACAAGCAGTA 59.189 40.000 0.00 0.00 0.00 2.74
268 269 4.631813 GGAATTCGTTCATAGACAAGCAGT 59.368 41.667 0.00 0.00 0.00 4.40
269 270 4.631377 TGGAATTCGTTCATAGACAAGCAG 59.369 41.667 0.00 0.00 0.00 4.24
270 271 4.574892 TGGAATTCGTTCATAGACAAGCA 58.425 39.130 0.00 0.00 0.00 3.91
271 272 5.741388 ATGGAATTCGTTCATAGACAAGC 57.259 39.130 0.00 0.00 0.00 4.01
272 273 6.986817 ACCTATGGAATTCGTTCATAGACAAG 59.013 38.462 22.05 12.92 41.49 3.16
273 274 6.884832 ACCTATGGAATTCGTTCATAGACAA 58.115 36.000 22.05 0.00 41.49 3.18
274 275 6.479972 ACCTATGGAATTCGTTCATAGACA 57.520 37.500 22.05 5.18 41.49 3.41
275 276 7.178712 CAACCTATGGAATTCGTTCATAGAC 57.821 40.000 22.05 0.33 41.49 2.59
302 303 0.029834 CAAAGGATGCCTGCGTATGC 59.970 55.000 0.00 0.00 43.20 3.14
303 304 1.064505 CACAAAGGATGCCTGCGTATG 59.935 52.381 0.00 0.00 32.13 2.39
304 305 1.340017 ACACAAAGGATGCCTGCGTAT 60.340 47.619 0.00 0.00 32.13 3.06
305 306 0.036164 ACACAAAGGATGCCTGCGTA 59.964 50.000 0.00 0.00 32.13 4.42
306 307 0.823356 AACACAAAGGATGCCTGCGT 60.823 50.000 0.00 0.00 32.13 5.24
307 308 0.387622 CAACACAAAGGATGCCTGCG 60.388 55.000 0.00 0.00 32.13 5.18
308 309 0.037975 CCAACACAAAGGATGCCTGC 60.038 55.000 0.00 0.00 32.13 4.85
309 310 0.604578 CCCAACACAAAGGATGCCTG 59.395 55.000 0.00 0.00 32.13 4.85
310 311 0.542702 CCCCAACACAAAGGATGCCT 60.543 55.000 0.00 0.00 33.87 4.75
311 312 0.541764 TCCCCAACACAAAGGATGCC 60.542 55.000 0.00 0.00 0.00 4.40
312 313 1.478105 GATCCCCAACACAAAGGATGC 59.522 52.381 0.00 0.00 39.24 3.91
313 314 2.806434 TGATCCCCAACACAAAGGATG 58.194 47.619 0.00 0.00 39.24 3.51
314 315 3.541242 TTGATCCCCAACACAAAGGAT 57.459 42.857 0.00 0.00 41.86 3.24
335 336 9.979270 CTCAGCTATCAGTAAAAACAATAGTTG 57.021 33.333 0.00 0.00 38.17 3.16
336 337 9.944376 TCTCAGCTATCAGTAAAAACAATAGTT 57.056 29.630 0.00 0.00 40.40 2.24
337 338 9.944376 TTCTCAGCTATCAGTAAAAACAATAGT 57.056 29.630 0.00 0.00 0.00 2.12
341 342 9.950680 CTTTTTCTCAGCTATCAGTAAAAACAA 57.049 29.630 0.00 0.00 0.00 2.83
342 343 9.337396 TCTTTTTCTCAGCTATCAGTAAAAACA 57.663 29.630 0.00 0.00 0.00 2.83
343 344 9.818796 CTCTTTTTCTCAGCTATCAGTAAAAAC 57.181 33.333 0.00 0.00 0.00 2.43
344 345 8.507249 GCTCTTTTTCTCAGCTATCAGTAAAAA 58.493 33.333 0.00 0.00 0.00 1.94
345 346 7.880195 AGCTCTTTTTCTCAGCTATCAGTAAAA 59.120 33.333 0.00 0.00 41.84 1.52
346 347 7.390027 AGCTCTTTTTCTCAGCTATCAGTAAA 58.610 34.615 0.00 0.00 41.84 2.01
347 348 6.940739 AGCTCTTTTTCTCAGCTATCAGTAA 58.059 36.000 0.00 0.00 41.84 2.24
348 349 6.153510 TGAGCTCTTTTTCTCAGCTATCAGTA 59.846 38.462 16.19 0.00 43.72 2.74
349 350 5.046735 TGAGCTCTTTTTCTCAGCTATCAGT 60.047 40.000 16.19 0.00 43.72 3.41
350 351 5.417811 TGAGCTCTTTTTCTCAGCTATCAG 58.582 41.667 16.19 0.00 43.72 2.90
351 352 5.411831 TGAGCTCTTTTTCTCAGCTATCA 57.588 39.130 16.19 0.00 43.72 2.15
352 353 6.923928 AATGAGCTCTTTTTCTCAGCTATC 57.076 37.500 16.19 0.00 43.72 2.08
353 354 6.095160 CCAAATGAGCTCTTTTTCTCAGCTAT 59.905 38.462 21.43 0.00 43.72 2.97
354 355 5.413833 CCAAATGAGCTCTTTTTCTCAGCTA 59.586 40.000 21.43 0.00 43.72 3.32
355 356 4.217983 CCAAATGAGCTCTTTTTCTCAGCT 59.782 41.667 21.43 0.00 46.42 4.24
356 357 4.483311 CCAAATGAGCTCTTTTTCTCAGC 58.517 43.478 21.43 0.00 41.95 4.26
357 358 4.082354 CCCCAAATGAGCTCTTTTTCTCAG 60.082 45.833 21.43 11.89 41.95 3.35
358 359 3.828451 CCCCAAATGAGCTCTTTTTCTCA 59.172 43.478 21.43 0.00 42.72 3.27
359 360 4.082125 TCCCCAAATGAGCTCTTTTTCTC 58.918 43.478 21.43 0.00 0.00 2.87
360 361 4.118168 TCCCCAAATGAGCTCTTTTTCT 57.882 40.909 21.43 2.50 0.00 2.52
361 362 4.463891 TGATCCCCAAATGAGCTCTTTTTC 59.536 41.667 21.43 16.75 0.00 2.29
362 363 4.221482 GTGATCCCCAAATGAGCTCTTTTT 59.779 41.667 21.43 14.95 0.00 1.94
363 364 3.766051 GTGATCCCCAAATGAGCTCTTTT 59.234 43.478 19.02 19.02 0.00 2.27
364 365 3.359950 GTGATCCCCAAATGAGCTCTTT 58.640 45.455 16.19 12.35 0.00 2.52
365 366 2.681976 CGTGATCCCCAAATGAGCTCTT 60.682 50.000 16.19 5.66 0.00 2.85
366 367 1.134280 CGTGATCCCCAAATGAGCTCT 60.134 52.381 16.19 0.00 0.00 4.09
367 368 1.134401 TCGTGATCCCCAAATGAGCTC 60.134 52.381 6.82 6.82 0.00 4.09
368 369 0.911769 TCGTGATCCCCAAATGAGCT 59.088 50.000 0.00 0.00 0.00 4.09
369 370 1.750193 TTCGTGATCCCCAAATGAGC 58.250 50.000 0.00 0.00 0.00 4.26
370 371 3.316308 GGAATTCGTGATCCCCAAATGAG 59.684 47.826 0.00 0.00 0.00 2.90
371 372 3.287222 GGAATTCGTGATCCCCAAATGA 58.713 45.455 0.00 0.00 0.00 2.57
372 373 3.715628 GGAATTCGTGATCCCCAAATG 57.284 47.619 0.00 0.00 0.00 2.32
379 380 2.169769 TGGTACAGGGAATTCGTGATCC 59.830 50.000 12.16 12.49 35.42 3.36
380 381 3.536956 TGGTACAGGGAATTCGTGATC 57.463 47.619 12.16 0.00 35.42 2.92
395 396 3.335579 GGTCCACTTCACTGAATGGTAC 58.664 50.000 14.73 12.31 33.67 3.34
396 397 2.028476 CGGTCCACTTCACTGAATGGTA 60.028 50.000 14.73 5.19 33.67 3.25
397 398 1.270839 CGGTCCACTTCACTGAATGGT 60.271 52.381 14.73 0.82 33.67 3.55
398 399 1.270839 ACGGTCCACTTCACTGAATGG 60.271 52.381 11.30 11.30 0.00 3.16
399 400 2.169832 ACGGTCCACTTCACTGAATG 57.830 50.000 0.00 0.00 0.00 2.67
400 401 2.897969 AGTACGGTCCACTTCACTGAAT 59.102 45.455 0.00 0.00 0.00 2.57
401 402 2.295349 GAGTACGGTCCACTTCACTGAA 59.705 50.000 0.00 0.00 0.00 3.02
402 403 1.884579 GAGTACGGTCCACTTCACTGA 59.115 52.381 0.00 0.00 0.00 3.41
403 404 1.887198 AGAGTACGGTCCACTTCACTG 59.113 52.381 0.00 0.00 0.00 3.66
404 405 2.289592 AGAGTACGGTCCACTTCACT 57.710 50.000 0.00 0.00 0.00 3.41
405 406 3.382048 AAAGAGTACGGTCCACTTCAC 57.618 47.619 0.00 0.00 0.00 3.18
406 407 3.640029 AGAAAAGAGTACGGTCCACTTCA 59.360 43.478 0.00 0.00 0.00 3.02
407 408 4.236147 GAGAAAAGAGTACGGTCCACTTC 58.764 47.826 0.00 0.00 0.00 3.01
408 409 3.640029 TGAGAAAAGAGTACGGTCCACTT 59.360 43.478 0.00 0.00 0.00 3.16
409 410 3.228453 TGAGAAAAGAGTACGGTCCACT 58.772 45.455 0.00 0.00 0.00 4.00
410 411 3.255149 TCTGAGAAAAGAGTACGGTCCAC 59.745 47.826 0.00 0.00 0.00 4.02
411 412 3.493334 TCTGAGAAAAGAGTACGGTCCA 58.507 45.455 0.00 0.00 0.00 4.02
412 413 4.099380 CTCTGAGAAAAGAGTACGGTCC 57.901 50.000 0.00 0.00 39.14 4.46
424 425 9.155975 GCATAAGATTCTAACAACTCTGAGAAA 57.844 33.333 12.44 0.00 32.00 2.52
425 426 8.535335 AGCATAAGATTCTAACAACTCTGAGAA 58.465 33.333 12.44 0.00 32.73 2.87
426 427 8.072321 AGCATAAGATTCTAACAACTCTGAGA 57.928 34.615 12.44 0.00 0.00 3.27
427 428 8.602328 CAAGCATAAGATTCTAACAACTCTGAG 58.398 37.037 2.45 2.45 0.00 3.35
428 429 7.550551 CCAAGCATAAGATTCTAACAACTCTGA 59.449 37.037 0.00 0.00 0.00 3.27
429 430 7.335422 ACCAAGCATAAGATTCTAACAACTCTG 59.665 37.037 0.00 0.00 0.00 3.35
430 431 7.398024 ACCAAGCATAAGATTCTAACAACTCT 58.602 34.615 0.00 0.00 0.00 3.24
431 432 7.617041 ACCAAGCATAAGATTCTAACAACTC 57.383 36.000 0.00 0.00 0.00 3.01
432 433 7.575720 GCAACCAAGCATAAGATTCTAACAACT 60.576 37.037 0.00 0.00 0.00 3.16
433 434 6.528072 GCAACCAAGCATAAGATTCTAACAAC 59.472 38.462 0.00 0.00 0.00 3.32
434 435 6.208402 TGCAACCAAGCATAAGATTCTAACAA 59.792 34.615 0.00 0.00 40.11 2.83
435 436 5.709631 TGCAACCAAGCATAAGATTCTAACA 59.290 36.000 0.00 0.00 40.11 2.41
436 437 6.194796 TGCAACCAAGCATAAGATTCTAAC 57.805 37.500 0.00 0.00 40.11 2.34
437 438 6.832520 TTGCAACCAAGCATAAGATTCTAA 57.167 33.333 0.00 0.00 45.19 2.10
438 439 6.434028 AGTTTGCAACCAAGCATAAGATTCTA 59.566 34.615 0.00 0.00 45.19 2.10
439 440 5.244626 AGTTTGCAACCAAGCATAAGATTCT 59.755 36.000 0.00 0.00 45.19 2.40
440 441 5.473039 AGTTTGCAACCAAGCATAAGATTC 58.527 37.500 0.00 0.00 45.19 2.52
441 442 5.473066 AGTTTGCAACCAAGCATAAGATT 57.527 34.783 0.00 0.00 45.19 2.40
442 443 6.780457 ATAGTTTGCAACCAAGCATAAGAT 57.220 33.333 0.00 0.00 45.19 2.40
443 444 7.695480 TTATAGTTTGCAACCAAGCATAAGA 57.305 32.000 0.00 0.00 45.19 2.10
444 445 8.931385 AATTATAGTTTGCAACCAAGCATAAG 57.069 30.769 0.00 0.00 45.19 1.73
445 446 9.796120 GTAATTATAGTTTGCAACCAAGCATAA 57.204 29.630 0.00 0.00 45.19 1.90
446 447 8.410141 GGTAATTATAGTTTGCAACCAAGCATA 58.590 33.333 0.00 0.00 45.19 3.14
447 448 7.093552 TGGTAATTATAGTTTGCAACCAAGCAT 60.094 33.333 0.00 0.00 45.19 3.79
448 449 6.209589 TGGTAATTATAGTTTGCAACCAAGCA 59.790 34.615 0.00 0.00 43.99 3.91
449 450 6.626302 TGGTAATTATAGTTTGCAACCAAGC 58.374 36.000 0.00 0.00 33.03 4.01
450 451 7.222611 GCATGGTAATTATAGTTTGCAACCAAG 59.777 37.037 0.00 0.00 39.08 3.61
451 452 7.038659 GCATGGTAATTATAGTTTGCAACCAA 58.961 34.615 0.00 0.00 39.08 3.67
452 453 6.379703 AGCATGGTAATTATAGTTTGCAACCA 59.620 34.615 0.00 0.00 39.87 3.67
453 454 6.805713 AGCATGGTAATTATAGTTTGCAACC 58.194 36.000 0.00 0.00 0.00 3.77
454 455 8.594687 CAAAGCATGGTAATTATAGTTTGCAAC 58.405 33.333 0.00 0.00 0.00 4.17
455 456 8.310382 ACAAAGCATGGTAATTATAGTTTGCAA 58.690 29.630 0.00 0.00 0.00 4.08
456 457 7.758980 CACAAAGCATGGTAATTATAGTTTGCA 59.241 33.333 0.00 0.00 0.00 4.08
457 458 7.759433 ACACAAAGCATGGTAATTATAGTTTGC 59.241 33.333 0.00 0.00 0.00 3.68
458 459 9.075519 CACACAAAGCATGGTAATTATAGTTTG 57.924 33.333 0.00 0.00 0.00 2.93
459 460 8.802267 ACACACAAAGCATGGTAATTATAGTTT 58.198 29.630 0.00 0.00 0.00 2.66
460 461 8.348285 ACACACAAAGCATGGTAATTATAGTT 57.652 30.769 0.00 0.00 0.00 2.24
461 462 7.938140 ACACACAAAGCATGGTAATTATAGT 57.062 32.000 0.00 0.00 0.00 2.12
462 463 9.325198 TCTACACACAAAGCATGGTAATTATAG 57.675 33.333 0.00 0.00 0.00 1.31
463 464 9.325198 CTCTACACACAAAGCATGGTAATTATA 57.675 33.333 0.00 0.00 0.00 0.98
464 465 7.201732 GCTCTACACACAAAGCATGGTAATTAT 60.202 37.037 0.00 0.00 34.86 1.28
465 466 6.093495 GCTCTACACACAAAGCATGGTAATTA 59.907 38.462 0.00 0.00 34.86 1.40
466 467 5.106157 GCTCTACACACAAAGCATGGTAATT 60.106 40.000 0.00 0.00 34.86 1.40
467 468 4.396166 GCTCTACACACAAAGCATGGTAAT 59.604 41.667 0.00 0.00 34.86 1.89
468 469 3.751175 GCTCTACACACAAAGCATGGTAA 59.249 43.478 0.00 0.00 34.86 2.85
469 470 3.244387 TGCTCTACACACAAAGCATGGTA 60.244 43.478 0.00 0.00 39.69 3.25
470 471 2.154462 GCTCTACACACAAAGCATGGT 58.846 47.619 0.00 0.00 34.86 3.55
471 472 2.153645 TGCTCTACACACAAAGCATGG 58.846 47.619 0.00 0.00 39.69 3.66
502 503 1.134159 GTTGATGAGCAGCAGGAGGAT 60.134 52.381 0.00 0.00 0.00 3.24
503 504 0.251354 GTTGATGAGCAGCAGGAGGA 59.749 55.000 0.00 0.00 0.00 3.71
508 509 2.097629 CCTTGATGTTGATGAGCAGCAG 59.902 50.000 0.00 0.00 41.17 4.24
529 530 6.892310 ATACGGTGGTTAGAAAACGTTATC 57.108 37.500 0.00 0.00 36.39 1.75
531 532 7.319646 ACATATACGGTGGTTAGAAAACGTTA 58.680 34.615 0.00 0.00 36.39 3.18
533 534 5.723295 ACATATACGGTGGTTAGAAAACGT 58.277 37.500 0.00 0.00 36.39 3.99
539 540 7.147312 CGGAAAATACATATACGGTGGTTAGA 58.853 38.462 0.00 0.00 0.00 2.10
540 541 6.925165 ACGGAAAATACATATACGGTGGTTAG 59.075 38.462 0.00 0.00 0.00 2.34
542 543 5.673514 ACGGAAAATACATATACGGTGGTT 58.326 37.500 0.00 0.00 0.00 3.67
567 568 5.471797 GGGAAGACAAAAGGAGAGAAAGAAG 59.528 44.000 0.00 0.00 0.00 2.85
611 612 5.995897 ACTCAGTTTGGTTACACTTACATCC 59.004 40.000 0.00 0.00 0.00 3.51
659 1163 4.657075 ACAAAATTAACCTCGTACAGCG 57.343 40.909 0.00 0.00 43.01 5.18
660 1164 7.019418 CCTTAACAAAATTAACCTCGTACAGC 58.981 38.462 0.00 0.00 0.00 4.40
679 1183 8.561738 TCCAGAAATAAGATGACAACCTTAAC 57.438 34.615 5.22 2.29 0.00 2.01
687 1191 7.836685 AGAGTAGACTCCAGAAATAAGATGACA 59.163 37.037 6.05 0.00 43.88 3.58
714 1218 0.179018 ACAGACTTGCCCACCAGTTC 60.179 55.000 0.00 0.00 0.00 3.01
722 1226 7.655732 ACACAAATTATTAAAACAGACTTGCCC 59.344 33.333 0.00 0.00 0.00 5.36
755 1375 9.965902 AAACAGTACAAGGAATTCTATGAATCT 57.034 29.630 15.01 8.62 0.00 2.40
809 1429 4.219033 CAAGGTCGTCACATTTAGTTTGC 58.781 43.478 0.00 0.00 0.00 3.68
814 1434 6.020916 CGTATGTACAAGGTCGTCACATTTAG 60.021 42.308 0.00 0.00 32.39 1.85
819 1439 2.553602 ACGTATGTACAAGGTCGTCACA 59.446 45.455 0.00 0.00 0.00 3.58
827 1447 8.085909 TGATATGAATACCACGTATGTACAAGG 58.914 37.037 0.00 0.00 0.00 3.61
828 1448 9.639601 ATGATATGAATACCACGTATGTACAAG 57.360 33.333 0.00 0.00 0.00 3.16
857 1477 6.441274 CATTCATGGGACGATTTATCCAAAG 58.559 40.000 0.00 0.00 38.06 2.77
885 1505 4.366267 ACAAATACAGAGAGATGACCCCT 58.634 43.478 0.00 0.00 0.00 4.79
886 1506 4.762289 ACAAATACAGAGAGATGACCCC 57.238 45.455 0.00 0.00 0.00 4.95
902 1524 7.276658 CGCAGAGACATCTTAGAAGTTACAAAT 59.723 37.037 0.00 0.00 31.64 2.32
1050 1679 0.530744 GCCTGTCGACACCATCACTA 59.469 55.000 15.76 0.00 0.00 2.74
1163 1796 1.687123 GCGTAGAGGCCCAGAGATTAA 59.313 52.381 0.00 0.00 0.00 1.40
1269 1905 5.501156 CAGGCTTTATCCAAGGAAGTAGTT 58.499 41.667 0.00 0.00 32.37 2.24
1331 1967 1.210234 TGGCATGACGAATCCACTCAT 59.790 47.619 0.00 0.00 0.00 2.90
1362 1998 4.058124 CAGAAACATGAAGGAGACGAACA 58.942 43.478 0.00 0.00 0.00 3.18
1405 2062 2.223665 GCTATGAAGGAAACATGGCTGC 60.224 50.000 0.00 0.00 44.64 5.25
1423 2080 1.895798 CCTGACTGTTCTGAGGTGCTA 59.104 52.381 0.00 0.00 0.00 3.49
1594 2251 7.225538 ACAAATCACGAGACCATCAAAGATATC 59.774 37.037 0.00 0.00 0.00 1.63
1647 2304 2.371841 AGTATCACAGCTTGGGTCAACA 59.628 45.455 0.00 0.00 0.00 3.33
1848 2631 5.982356 TCTAGGCTTGTATGGATATGATGC 58.018 41.667 0.00 0.00 0.00 3.91
1861 2767 8.930846 AAGCAAATATATTCATCTAGGCTTGT 57.069 30.769 0.00 0.00 36.60 3.16
1862 2768 8.457261 GGAAGCAAATATATTCATCTAGGCTTG 58.543 37.037 0.00 0.00 37.92 4.01
1863 2769 7.613411 GGGAAGCAAATATATTCATCTAGGCTT 59.387 37.037 0.00 0.00 40.21 4.35
1864 2770 7.037008 AGGGAAGCAAATATATTCATCTAGGCT 60.037 37.037 0.00 0.00 0.00 4.58
1865 2771 7.115414 AGGGAAGCAAATATATTCATCTAGGC 58.885 38.462 0.00 0.00 0.00 3.93
1866 2772 9.829507 CTAGGGAAGCAAATATATTCATCTAGG 57.170 37.037 0.00 0.00 31.73 3.02
1877 2783 9.700831 ACAAAATCTAACTAGGGAAGCAAATAT 57.299 29.630 0.00 0.00 0.00 1.28
1878 2784 9.528489 AACAAAATCTAACTAGGGAAGCAAATA 57.472 29.630 0.00 0.00 0.00 1.40
1879 2785 8.422577 AACAAAATCTAACTAGGGAAGCAAAT 57.577 30.769 0.00 0.00 0.00 2.32
1880 2786 7.833285 AACAAAATCTAACTAGGGAAGCAAA 57.167 32.000 0.00 0.00 0.00 3.68
1980 2891 8.574251 TCCATGCTAGCTTGTTAAAATAAGAA 57.426 30.769 24.31 0.00 29.67 2.52
2009 2927 7.900352 GTGAGTTGAATAGTTTGATCATTCGAC 59.100 37.037 14.62 14.62 40.85 4.20
2257 3177 6.127563 CCTTACCGCCTTAAAAACAATGGTAT 60.128 38.462 0.00 0.00 31.36 2.73
2258 3178 5.183522 CCTTACCGCCTTAAAAACAATGGTA 59.816 40.000 0.00 0.00 0.00 3.25
2259 3179 4.021807 CCTTACCGCCTTAAAAACAATGGT 60.022 41.667 0.00 0.00 0.00 3.55
2260 3180 4.490743 CCTTACCGCCTTAAAAACAATGG 58.509 43.478 0.00 0.00 0.00 3.16
2261 3181 3.924073 GCCTTACCGCCTTAAAAACAATG 59.076 43.478 0.00 0.00 0.00 2.82
2262 3182 3.366577 CGCCTTACCGCCTTAAAAACAAT 60.367 43.478 0.00 0.00 0.00 2.71
2263 3183 2.030981 CGCCTTACCGCCTTAAAAACAA 60.031 45.455 0.00 0.00 0.00 2.83
2264 3184 1.536331 CGCCTTACCGCCTTAAAAACA 59.464 47.619 0.00 0.00 0.00 2.83
2265 3185 1.805943 TCGCCTTACCGCCTTAAAAAC 59.194 47.619 0.00 0.00 0.00 2.43
2266 3186 1.805943 GTCGCCTTACCGCCTTAAAAA 59.194 47.619 0.00 0.00 0.00 1.94
2267 3187 1.441738 GTCGCCTTACCGCCTTAAAA 58.558 50.000 0.00 0.00 0.00 1.52
2268 3188 0.391528 GGTCGCCTTACCGCCTTAAA 60.392 55.000 0.00 0.00 0.00 1.52
2269 3189 1.218854 GGTCGCCTTACCGCCTTAA 59.781 57.895 0.00 0.00 0.00 1.85
2270 3190 0.395586 TAGGTCGCCTTACCGCCTTA 60.396 55.000 3.71 0.00 44.77 2.69
2271 3191 1.259840 TTAGGTCGCCTTACCGCCTT 61.260 55.000 3.71 0.00 44.77 4.35
2272 3192 1.673808 CTTAGGTCGCCTTACCGCCT 61.674 60.000 3.71 0.00 44.77 5.52
2273 3193 1.227176 CTTAGGTCGCCTTACCGCC 60.227 63.158 3.71 0.00 44.77 6.13
2274 3194 1.227176 CCTTAGGTCGCCTTACCGC 60.227 63.158 3.71 0.00 44.77 5.68
2275 3195 1.227176 GCCTTAGGTCGCCTTACCG 60.227 63.158 0.00 0.00 44.77 4.02
2276 3196 1.227176 CGCCTTAGGTCGCCTTACC 60.227 63.158 0.00 0.00 40.06 2.85
2277 3197 0.248949 CTCGCCTTAGGTCGCCTTAC 60.249 60.000 9.56 0.00 34.61 2.34
2278 3198 2.012902 GCTCGCCTTAGGTCGCCTTA 62.013 60.000 9.56 0.00 34.61 2.69
2279 3199 2.893398 CTCGCCTTAGGTCGCCTT 59.107 61.111 9.56 0.00 34.61 4.35
2280 3200 3.839432 GCTCGCCTTAGGTCGCCT 61.839 66.667 9.56 3.87 37.71 5.52
2281 3201 4.143333 TGCTCGCCTTAGGTCGCC 62.143 66.667 9.56 5.02 0.00 5.54
2282 3202 2.886124 GTGCTCGCCTTAGGTCGC 60.886 66.667 9.56 6.05 0.00 5.19
2283 3203 2.202756 GGTGCTCGCCTTAGGTCG 60.203 66.667 0.00 4.42 0.00 4.79
2284 3204 1.448013 GTGGTGCTCGCCTTAGGTC 60.448 63.158 0.00 0.00 0.00 3.85
2285 3205 2.663196 GTGGTGCTCGCCTTAGGT 59.337 61.111 0.00 0.00 0.00 3.08
2286 3206 2.125106 GGTGGTGCTCGCCTTAGG 60.125 66.667 0.00 0.00 42.62 2.69
2287 3207 2.125106 GGGTGGTGCTCGCCTTAG 60.125 66.667 9.43 0.00 45.18 2.18
2288 3208 4.077184 CGGGTGGTGCTCGCCTTA 62.077 66.667 9.43 0.00 45.18 2.69
2314 3234 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
2315 3235 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
2316 3236 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
2317 3237 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
2318 3238 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
2319 3239 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
2320 3240 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
2321 3241 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
2322 3242 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
2323 3243 1.600413 GCAGCGCCTTACAAATATGCC 60.600 52.381 2.29 0.00 0.00 4.40
2324 3244 1.600413 GGCAGCGCCTTACAAATATGC 60.600 52.381 2.29 2.54 46.69 3.14
2325 3245 2.405892 GGCAGCGCCTTACAAATATG 57.594 50.000 2.29 0.00 46.69 1.78
2359 3279 1.450312 CCTGCCTTGGACGCTTAGG 60.450 63.158 0.00 0.00 0.00 2.69
2360 3280 0.741221 GTCCTGCCTTGGACGCTTAG 60.741 60.000 5.14 0.00 45.69 2.18
2361 3281 1.295423 GTCCTGCCTTGGACGCTTA 59.705 57.895 5.14 0.00 45.69 3.09
2362 3282 2.032681 GTCCTGCCTTGGACGCTT 59.967 61.111 5.14 0.00 45.69 4.68
2373 3293 2.785713 TTGTTTTTAAGGCGTCCTGC 57.214 45.000 0.00 0.00 45.38 4.85
2374 3294 3.005367 ACCATTGTTTTTAAGGCGTCCTG 59.995 43.478 0.00 0.00 32.13 3.86
2375 3295 3.227614 ACCATTGTTTTTAAGGCGTCCT 58.772 40.909 0.00 0.00 33.87 3.85
2376 3296 3.653539 ACCATTGTTTTTAAGGCGTCC 57.346 42.857 0.00 0.00 0.00 4.79
2377 3297 8.614346 TGTATATACCATTGTTTTTAAGGCGTC 58.386 33.333 10.38 0.00 0.00 5.19
2378 3298 8.508883 TGTATATACCATTGTTTTTAAGGCGT 57.491 30.769 10.38 0.00 0.00 5.68
2379 3299 8.617809 ACTGTATATACCATTGTTTTTAAGGCG 58.382 33.333 10.38 0.00 0.00 5.52
2483 3426 1.200948 GCAGGTTCAGAATCCTTGCAC 59.799 52.381 3.32 0.00 32.43 4.57
2575 3523 1.395635 TGGATCATGTTCATGGCAGC 58.604 50.000 12.02 0.00 0.00 5.25
2586 3534 2.158900 ACGAGCTAACCCTTGGATCATG 60.159 50.000 0.00 0.00 0.00 3.07
2600 3548 2.047274 GCCTGCACCAACGAGCTA 60.047 61.111 0.00 0.00 0.00 3.32
2636 3584 3.064408 GCTCGATGCTGATTTTCACATCA 59.936 43.478 14.53 0.00 36.06 3.07
2677 3625 3.958147 CCCCAAACAAAACAAGGTCTAGT 59.042 43.478 0.00 0.00 0.00 2.57
2711 3660 3.190535 ACATTAATTCGGCACTGACCAAC 59.809 43.478 0.00 0.00 0.00 3.77
2723 3672 6.668541 ATCTTGTCTCCACACATTAATTCG 57.331 37.500 0.00 0.00 29.76 3.34
2726 3675 5.948162 AGCAATCTTGTCTCCACACATTAAT 59.052 36.000 0.00 0.00 29.76 1.40
2770 3720 2.811431 TCTAAAACATGCCCTTGTGTCG 59.189 45.455 0.00 0.00 0.00 4.35
2785 3735 4.522405 CACATCCACACCCATTGTCTAAAA 59.478 41.667 0.00 0.00 35.67 1.52
2803 3753 3.559238 AGCAAAATTCGACCACACATC 57.441 42.857 0.00 0.00 0.00 3.06
2851 3801 6.387041 AATCCATCATGCAAATGACACTAG 57.613 37.500 12.66 0.00 32.79 2.57
2910 3860 9.512435 CCATCATCTAAAACATGATTTCAGAAC 57.488 33.333 3.99 0.00 38.67 3.01
2911 3861 8.689061 CCCATCATCTAAAACATGATTTCAGAA 58.311 33.333 3.99 0.00 38.67 3.02
2912 3862 7.835682 ACCCATCATCTAAAACATGATTTCAGA 59.164 33.333 3.99 7.04 38.67 3.27
2913 3863 8.004087 ACCCATCATCTAAAACATGATTTCAG 57.996 34.615 3.99 2.29 38.67 3.02
2914 3864 7.959658 ACCCATCATCTAAAACATGATTTCA 57.040 32.000 3.99 0.00 38.67 2.69
2915 3865 9.903682 CATACCCATCATCTAAAACATGATTTC 57.096 33.333 3.99 0.00 38.67 2.17
2916 3866 9.645128 TCATACCCATCATCTAAAACATGATTT 57.355 29.630 0.00 2.25 38.67 2.17
2917 3867 9.818270 ATCATACCCATCATCTAAAACATGATT 57.182 29.630 0.00 0.00 38.67 2.57
2932 3882 5.695851 AGCGAAATTTGATCATACCCATC 57.304 39.130 0.00 0.00 0.00 3.51
2939 3889 6.263842 ACATGTGGATAGCGAAATTTGATCAT 59.736 34.615 0.00 0.00 0.00 2.45
2945 3903 5.589855 TCATCACATGTGGATAGCGAAATTT 59.410 36.000 25.16 0.00 0.00 1.82
2987 3945 5.880887 TGACACTCAACTAGTCTATGACGAT 59.119 40.000 0.00 0.00 35.76 3.73
2990 3948 7.815068 ACAAATGACACTCAACTAGTCTATGAC 59.185 37.037 0.00 0.00 35.76 3.06
2993 3951 7.039011 TCCACAAATGACACTCAACTAGTCTAT 60.039 37.037 0.00 0.00 35.76 1.98
3013 3971 7.920151 CACACAGTTTCTTAAATGATTCCACAA 59.080 33.333 0.00 0.00 33.72 3.33
3014 3972 7.068103 ACACACAGTTTCTTAAATGATTCCACA 59.932 33.333 0.00 0.00 33.72 4.17
3015 3973 7.425606 ACACACAGTTTCTTAAATGATTCCAC 58.574 34.615 0.00 0.00 33.72 4.02
3016 3974 7.581213 ACACACAGTTTCTTAAATGATTCCA 57.419 32.000 0.00 0.00 33.72 3.53
3017 3975 8.237267 CCTACACACAGTTTCTTAAATGATTCC 58.763 37.037 0.00 0.00 33.72 3.01
3054 4244 4.035091 TGAATGAAACAACGAGAACACAGG 59.965 41.667 0.00 0.00 0.00 4.00
3094 4318 6.739112 AGAAGAAAGTCATGTTAAAGTTGCC 58.261 36.000 0.00 0.00 0.00 4.52
3095 4319 7.915397 TGAAGAAGAAAGTCATGTTAAAGTTGC 59.085 33.333 0.00 0.00 0.00 4.17
3096 4320 9.787532 TTGAAGAAGAAAGTCATGTTAAAGTTG 57.212 29.630 0.00 0.00 0.00 3.16
3098 4322 9.788960 GTTTGAAGAAGAAAGTCATGTTAAAGT 57.211 29.630 0.00 0.00 0.00 2.66
3099 4323 9.237846 GGTTTGAAGAAGAAAGTCATGTTAAAG 57.762 33.333 0.00 0.00 0.00 1.85
3100 4324 8.194769 GGGTTTGAAGAAGAAAGTCATGTTAAA 58.805 33.333 0.00 0.00 0.00 1.52
3101 4325 7.201875 GGGGTTTGAAGAAGAAAGTCATGTTAA 60.202 37.037 0.00 0.00 0.00 2.01
3102 4326 6.264518 GGGGTTTGAAGAAGAAAGTCATGTTA 59.735 38.462 0.00 0.00 0.00 2.41
3112 4336 4.398319 CAGCTTAGGGGTTTGAAGAAGAA 58.602 43.478 0.00 0.00 0.00 2.52
3180 4410 4.942761 ACATTGTCAAAGGTCTTTGCAT 57.057 36.364 16.20 7.39 46.92 3.96
3248 4481 2.552743 GGACCCGAAAGAAAAGACAAGG 59.447 50.000 0.00 0.00 0.00 3.61
3268 4501 0.545071 AAAGAAAGGGGTGCATGGGG 60.545 55.000 0.00 0.00 0.00 4.96
3269 4502 1.002315 CAAAAGAAAGGGGTGCATGGG 59.998 52.381 0.00 0.00 0.00 4.00
3276 4509 5.454613 CCAATAAAGTGCAAAAGAAAGGGGT 60.455 40.000 0.00 0.00 0.00 4.95
3474 4805 3.074412 TGGCCGAACATTCTCTTCTTTC 58.926 45.455 0.00 0.00 0.00 2.62
3635 4980 3.737172 GCGGAAGTGGCGCACATT 61.737 61.111 10.83 0.00 36.74 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.