Multiple sequence alignment - TraesCS5D01G006100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G006100 chr5D 100.000 5447 0 0 1 5447 5223990 5218544 0.000000e+00 10059.0
1 TraesCS5D01G006100 chr5A 91.436 3001 166 36 739 3693 3518489 3521444 0.000000e+00 4034.0
2 TraesCS5D01G006100 chr5A 88.331 1534 93 31 3700 5193 3521376 3522863 0.000000e+00 1762.0
3 TraesCS5D01G006100 chr5A 94.097 288 16 1 5161 5447 3522891 3523178 2.330000e-118 436.0
4 TraesCS5D01G006100 chr5A 92.857 168 12 0 291 458 3517524 3517691 1.520000e-60 244.0
5 TraesCS5D01G006100 chr5A 95.000 40 0 2 1 39 3517488 3517526 1.640000e-05 62.1
6 TraesCS5D01G006100 chr5B 92.622 2426 135 21 1031 3423 6645259 6647673 0.000000e+00 3448.0
7 TraesCS5D01G006100 chr5B 88.100 1832 117 45 3405 5205 6647798 6649559 0.000000e+00 2082.0
8 TraesCS5D01G006100 chr5B 97.143 35 1 0 833 867 6640002 6640036 5.890000e-05 60.2
9 TraesCS5D01G006100 chr2B 89.354 263 17 9 35 289 101032553 101032812 2.450000e-83 320.0
10 TraesCS5D01G006100 chr2B 87.361 269 27 7 34 296 717484406 717484139 8.870000e-78 302.0
11 TraesCS5D01G006100 chr2B 87.547 265 25 8 33 292 225571636 225571375 3.190000e-77 300.0
12 TraesCS5D01G006100 chr3A 88.346 266 23 5 34 293 566874369 566874632 4.100000e-81 313.0
13 TraesCS5D01G006100 chr2D 90.496 242 13 8 36 270 293151988 293152226 1.470000e-80 311.0
14 TraesCS5D01G006100 chr2D 87.170 265 25 8 33 292 172409400 172409660 5.340000e-75 292.0
15 TraesCS5D01G006100 chr3D 87.970 266 24 5 34 293 422529059 422528796 1.910000e-79 307.0
16 TraesCS5D01G006100 chr3D 87.692 65 8 0 2962 3026 73443489 73443553 5.850000e-10 76.8
17 TraesCS5D01G006100 chr3B 87.970 266 22 7 34 293 550653106 550652845 6.850000e-79 305.0
18 TraesCS5D01G006100 chr1A 87.500 264 26 6 39 297 532744665 532744926 1.150000e-76 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G006100 chr5D 5218544 5223990 5446 True 10059.00 10059 100.0000 1 5447 1 chr5D.!!$R1 5446
1 TraesCS5D01G006100 chr5A 3517488 3523178 5690 False 1307.62 4034 92.3442 1 5447 5 chr5A.!!$F1 5446
2 TraesCS5D01G006100 chr5B 6645259 6649559 4300 False 2765.00 3448 90.3610 1031 5205 2 chr5B.!!$F2 4174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 1485 0.114168 TGCAATGTAGGGGCCAAGTT 59.886 50.000 4.39 0.0 0.0 2.66 F
890 1493 0.704076 AGGGGCCAAGTTGCAATCTA 59.296 50.000 4.39 0.0 0.0 1.98 F
1596 2229 0.856982 GAGGATGAGGAGGAGGAGGA 59.143 60.000 0.00 0.0 0.0 3.71 F
1676 2309 1.075896 GACGGGATGGAGGAGGACT 60.076 63.158 0.00 0.0 0.0 3.85 F
2002 2635 1.134401 GTCATCGTCATGGTGGTGGAT 60.134 52.381 0.00 0.0 0.0 3.41 F
3291 3929 1.196808 GAAAATGCCGAAGAACTGCGA 59.803 47.619 3.56 0.0 0.0 5.10 F
3917 4705 1.175983 GGACAGAGAGGCGGATCGAT 61.176 60.000 0.00 0.0 0.0 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 3100 0.107508 GATGCAGCAAGCCAGGAGTA 60.108 55.000 0.00 0.0 44.83 2.59 R
2847 3480 3.006110 ACCGAAGTCCATTTCAACTACGA 59.994 43.478 0.00 0.0 0.00 3.43 R
3183 3821 1.336424 GCTTCTAGTAGATCCAGGCGC 60.336 57.143 0.00 0.0 0.00 6.53 R
3291 3929 1.816835 CTGATGCCAACATGCTTGTCT 59.183 47.619 5.61 0.0 36.35 3.41 R
3512 4295 2.095059 CACCTGAACAAACCTATGCTGC 60.095 50.000 0.00 0.0 0.00 5.25 R
4184 4972 0.109412 AAAGGTCGTCGTCATCGTCC 60.109 55.000 0.00 0.0 38.33 4.79 R
5043 5885 0.460635 ATAAACATACGCGCCGTGGT 60.461 50.000 5.73 0.0 41.39 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 8.344939 ACCTAGTTAAATATCCCTCCATTTCA 57.655 34.615 0.00 0.00 0.00 2.69
51 53 8.440771 ACCTAGTTAAATATCCCTCCATTTCAG 58.559 37.037 0.00 0.00 0.00 3.02
52 54 8.660435 CCTAGTTAAATATCCCTCCATTTCAGA 58.340 37.037 0.00 0.00 0.00 3.27
61 63 7.654287 ATCCCTCCATTTCAGAATATAAGGT 57.346 36.000 0.00 0.00 0.00 3.50
62 64 6.841601 TCCCTCCATTTCAGAATATAAGGTG 58.158 40.000 0.00 0.00 0.00 4.00
63 65 6.389869 TCCCTCCATTTCAGAATATAAGGTGT 59.610 38.462 0.00 0.00 0.00 4.16
64 66 7.570982 TCCCTCCATTTCAGAATATAAGGTGTA 59.429 37.037 0.00 0.00 0.00 2.90
65 67 8.386264 CCCTCCATTTCAGAATATAAGGTGTAT 58.614 37.037 0.00 0.00 0.00 2.29
66 68 9.799106 CCTCCATTTCAGAATATAAGGTGTATT 57.201 33.333 0.00 0.00 0.00 1.89
68 70 9.573166 TCCATTTCAGAATATAAGGTGTATTGG 57.427 33.333 0.00 0.00 0.00 3.16
69 71 9.354673 CCATTTCAGAATATAAGGTGTATTGGT 57.645 33.333 0.00 0.00 0.00 3.67
73 75 8.974060 TCAGAATATAAGGTGTATTGGTTTCC 57.026 34.615 0.00 0.00 0.00 3.13
74 76 8.553153 TCAGAATATAAGGTGTATTGGTTTCCA 58.447 33.333 0.00 0.00 0.00 3.53
75 77 9.354673 CAGAATATAAGGTGTATTGGTTTCCAT 57.645 33.333 0.00 0.00 31.53 3.41
76 78 9.354673 AGAATATAAGGTGTATTGGTTTCCATG 57.645 33.333 0.00 0.00 31.53 3.66
77 79 9.349713 GAATATAAGGTGTATTGGTTTCCATGA 57.650 33.333 0.00 0.00 31.53 3.07
78 80 9.707957 AATATAAGGTGTATTGGTTTCCATGAA 57.292 29.630 0.00 0.00 31.53 2.57
79 81 9.707957 ATATAAGGTGTATTGGTTTCCATGAAA 57.292 29.630 0.00 0.00 31.53 2.69
80 82 5.982890 AGGTGTATTGGTTTCCATGAAAG 57.017 39.130 0.00 0.00 31.87 2.62
81 83 5.393866 AGGTGTATTGGTTTCCATGAAAGT 58.606 37.500 0.00 0.00 31.87 2.66
82 84 5.476945 AGGTGTATTGGTTTCCATGAAAGTC 59.523 40.000 0.00 0.00 31.87 3.01
83 85 5.242838 GGTGTATTGGTTTCCATGAAAGTCA 59.757 40.000 0.00 0.00 31.87 3.41
84 86 6.239176 GGTGTATTGGTTTCCATGAAAGTCAA 60.239 38.462 0.00 2.40 33.73 3.18
85 87 7.206687 GTGTATTGGTTTCCATGAAAGTCAAA 58.793 34.615 0.00 0.00 33.31 2.69
86 88 7.169140 GTGTATTGGTTTCCATGAAAGTCAAAC 59.831 37.037 0.00 0.00 33.31 2.93
87 89 5.930837 TTGGTTTCCATGAAAGTCAAACT 57.069 34.783 0.00 0.00 31.87 2.66
88 90 5.930837 TGGTTTCCATGAAAGTCAAACTT 57.069 34.783 0.00 0.00 40.80 2.66
89 91 7.411486 TTGGTTTCCATGAAAGTCAAACTTA 57.589 32.000 0.00 0.00 32.97 2.24
90 92 7.595819 TGGTTTCCATGAAAGTCAAACTTAT 57.404 32.000 0.00 0.00 37.47 1.73
91 93 7.432869 TGGTTTCCATGAAAGTCAAACTTATG 58.567 34.615 0.00 0.00 37.47 1.90
92 94 7.069331 TGGTTTCCATGAAAGTCAAACTTATGT 59.931 33.333 0.00 0.00 37.47 2.29
93 95 8.573035 GGTTTCCATGAAAGTCAAACTTATGTA 58.427 33.333 0.00 0.00 37.47 2.29
96 98 8.862325 TCCATGAAAGTCAAACTTATGTATGT 57.138 30.769 0.00 0.00 37.47 2.29
97 99 9.295825 TCCATGAAAGTCAAACTTATGTATGTT 57.704 29.630 0.00 0.00 37.47 2.71
98 100 9.912634 CCATGAAAGTCAAACTTATGTATGTTT 57.087 29.630 0.00 0.00 37.47 2.83
195 197 9.645128 TGATGGATCTAATGATACAAATTTGGT 57.355 29.630 21.74 10.27 45.72 3.67
206 208 9.905713 ATGATACAAATTTGGTACTGTAGATGT 57.094 29.630 21.74 0.00 0.00 3.06
207 209 9.733556 TGATACAAATTTGGTACTGTAGATGTT 57.266 29.630 21.74 0.00 0.00 2.71
208 210 9.988350 GATACAAATTTGGTACTGTAGATGTTG 57.012 33.333 21.74 0.00 0.00 3.33
209 211 9.733556 ATACAAATTTGGTACTGTAGATGTTGA 57.266 29.630 21.74 0.00 0.00 3.18
210 212 8.635765 ACAAATTTGGTACTGTAGATGTTGAT 57.364 30.769 21.74 0.00 0.00 2.57
211 213 9.733556 ACAAATTTGGTACTGTAGATGTTGATA 57.266 29.630 21.74 0.00 0.00 2.15
230 232 9.679661 TGTTGATATATTCTTAAAGCTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
243 245 3.896648 CTTGGTCAAACAAGCACGTAT 57.103 42.857 0.00 0.00 41.09 3.06
244 246 4.223320 CTTGGTCAAACAAGCACGTATT 57.777 40.909 0.00 0.00 41.09 1.89
245 247 4.606961 CTTGGTCAAACAAGCACGTATTT 58.393 39.130 0.00 0.00 41.09 1.40
246 248 3.958704 TGGTCAAACAAGCACGTATTTG 58.041 40.909 9.04 9.04 34.11 2.32
247 249 3.628032 TGGTCAAACAAGCACGTATTTGA 59.372 39.130 15.62 10.99 38.42 2.69
250 252 5.493133 TCAAACAAGCACGTATTTGACTT 57.507 34.783 15.62 7.47 36.42 3.01
251 253 5.885881 TCAAACAAGCACGTATTTGACTTT 58.114 33.333 15.62 6.23 36.42 2.66
252 254 7.017498 TCAAACAAGCACGTATTTGACTTTA 57.983 32.000 15.62 1.55 36.42 1.85
253 255 7.473366 TCAAACAAGCACGTATTTGACTTTAA 58.527 30.769 15.62 0.00 36.42 1.52
254 256 7.968956 TCAAACAAGCACGTATTTGACTTTAAA 59.031 29.630 15.62 0.00 36.42 1.52
255 257 8.587950 CAAACAAGCACGTATTTGACTTTAAAA 58.412 29.630 15.62 0.00 34.62 1.52
256 258 8.690680 AACAAGCACGTATTTGACTTTAAAAA 57.309 26.923 15.62 0.00 0.00 1.94
286 288 8.940397 ATACACCTTATATTTTGGAATGGAGG 57.060 34.615 0.00 0.00 0.00 4.30
287 289 6.136155 ACACCTTATATTTTGGAATGGAGGG 58.864 40.000 0.00 0.00 30.50 4.30
288 290 6.068498 ACACCTTATATTTTGGAATGGAGGGA 60.068 38.462 0.00 0.00 30.50 4.20
289 291 6.491403 CACCTTATATTTTGGAATGGAGGGAG 59.509 42.308 0.00 0.00 30.50 4.30
318 320 9.689501 TTAGTTTAGGGTAAGAATTTGGGTATG 57.310 33.333 0.00 0.00 0.00 2.39
319 321 7.935405 AGTTTAGGGTAAGAATTTGGGTATGA 58.065 34.615 0.00 0.00 0.00 2.15
345 347 4.152647 GGTTCATCCCAAAGAAGGTTTCT 58.847 43.478 0.00 0.00 43.15 2.52
421 423 4.308265 GCCTTATAAGCCCTTCTTAGTCG 58.692 47.826 6.99 0.00 40.34 4.18
423 425 5.530712 CCTTATAAGCCCTTCTTAGTCGAC 58.469 45.833 7.70 7.70 40.34 4.20
431 433 4.430908 CCCTTCTTAGTCGACCAATACAC 58.569 47.826 13.01 0.00 0.00 2.90
443 445 2.034053 ACCAATACACGCAACCAAGTTG 59.966 45.455 3.09 3.09 45.24 3.16
452 454 2.576615 GCAACCAAGTTGAGTCTTCCT 58.423 47.619 11.50 0.00 45.28 3.36
453 455 2.550180 GCAACCAAGTTGAGTCTTCCTC 59.450 50.000 11.50 0.00 45.28 3.71
454 456 3.142174 CAACCAAGTTGAGTCTTCCTCC 58.858 50.000 3.87 0.00 45.28 4.30
455 457 2.695585 ACCAAGTTGAGTCTTCCTCCT 58.304 47.619 3.87 0.00 39.65 3.69
456 458 2.635427 ACCAAGTTGAGTCTTCCTCCTC 59.365 50.000 3.87 0.00 39.65 3.71
457 459 2.027653 CCAAGTTGAGTCTTCCTCCTCC 60.028 54.545 3.87 0.00 39.65 4.30
458 460 2.634940 CAAGTTGAGTCTTCCTCCTCCA 59.365 50.000 0.00 0.00 39.65 3.86
459 461 2.252714 AGTTGAGTCTTCCTCCTCCAC 58.747 52.381 0.00 0.00 39.65 4.02
460 462 2.158234 AGTTGAGTCTTCCTCCTCCACT 60.158 50.000 0.00 0.00 39.65 4.00
461 463 3.076182 AGTTGAGTCTTCCTCCTCCACTA 59.924 47.826 0.00 0.00 39.65 2.74
462 464 3.374042 TGAGTCTTCCTCCTCCACTAG 57.626 52.381 0.00 0.00 39.65 2.57
463 465 2.920271 TGAGTCTTCCTCCTCCACTAGA 59.080 50.000 0.00 0.00 39.65 2.43
464 466 3.333980 TGAGTCTTCCTCCTCCACTAGAA 59.666 47.826 0.00 0.00 39.65 2.10
465 467 4.202684 TGAGTCTTCCTCCTCCACTAGAAA 60.203 45.833 0.00 0.00 39.65 2.52
466 468 4.753186 AGTCTTCCTCCTCCACTAGAAAA 58.247 43.478 0.00 0.00 0.00 2.29
467 469 4.775253 AGTCTTCCTCCTCCACTAGAAAAG 59.225 45.833 0.00 0.00 0.00 2.27
468 470 4.773149 GTCTTCCTCCTCCACTAGAAAAGA 59.227 45.833 0.00 0.00 0.00 2.52
469 471 5.020132 TCTTCCTCCTCCACTAGAAAAGAG 58.980 45.833 0.00 0.00 0.00 2.85
470 472 3.100671 TCCTCCTCCACTAGAAAAGAGC 58.899 50.000 0.00 0.00 0.00 4.09
471 473 3.103742 CCTCCTCCACTAGAAAAGAGCT 58.896 50.000 0.00 0.00 0.00 4.09
472 474 3.517500 CCTCCTCCACTAGAAAAGAGCTT 59.482 47.826 0.00 0.00 0.00 3.74
473 475 4.712337 CCTCCTCCACTAGAAAAGAGCTTA 59.288 45.833 0.00 0.00 0.00 3.09
474 476 5.365314 CCTCCTCCACTAGAAAAGAGCTTAT 59.635 44.000 0.00 0.00 0.00 1.73
475 477 6.227298 TCCTCCACTAGAAAAGAGCTTATG 57.773 41.667 0.00 0.00 0.00 1.90
476 478 5.721960 TCCTCCACTAGAAAAGAGCTTATGT 59.278 40.000 0.00 0.00 0.00 2.29
477 479 6.045955 CCTCCACTAGAAAAGAGCTTATGTC 58.954 44.000 0.00 0.00 0.00 3.06
478 480 6.127196 CCTCCACTAGAAAAGAGCTTATGTCT 60.127 42.308 0.00 0.00 0.00 3.41
479 481 7.246171 TCCACTAGAAAAGAGCTTATGTCTT 57.754 36.000 0.00 0.00 35.71 3.01
480 482 7.324178 TCCACTAGAAAAGAGCTTATGTCTTC 58.676 38.462 0.00 0.00 32.93 2.87
481 483 7.039011 TCCACTAGAAAAGAGCTTATGTCTTCA 60.039 37.037 0.00 0.00 32.93 3.02
490 492 4.555689 AGCTTATGTCTTCATCCTCCTCT 58.444 43.478 0.00 0.00 35.70 3.69
491 493 4.588528 AGCTTATGTCTTCATCCTCCTCTC 59.411 45.833 0.00 0.00 35.70 3.20
519 521 3.043999 GCTGCCGGTCCACCCTATT 62.044 63.158 1.90 0.00 0.00 1.73
522 524 1.202099 TGCCGGTCCACCCTATTTCA 61.202 55.000 1.90 0.00 0.00 2.69
525 527 2.797786 CCGGTCCACCCTATTTCAAAA 58.202 47.619 0.00 0.00 0.00 2.44
526 528 2.490509 CCGGTCCACCCTATTTCAAAAC 59.509 50.000 0.00 0.00 0.00 2.43
527 529 3.150767 CGGTCCACCCTATTTCAAAACA 58.849 45.455 0.00 0.00 0.00 2.83
561 1144 7.549615 TGAAGAGATGCATGAAGACTTATTG 57.450 36.000 2.46 0.00 0.00 1.90
573 1156 9.132521 CATGAAGACTTATTGGACATTTCAAAC 57.867 33.333 0.00 0.00 0.00 2.93
574 1157 7.657336 TGAAGACTTATTGGACATTTCAAACC 58.343 34.615 0.00 0.00 0.00 3.27
602 1185 7.886629 AATTGTCAATAGATGTATGCAAGGT 57.113 32.000 0.00 0.00 0.00 3.50
621 1204 6.347725 GCAAGGTAGACTTCAACATGTTACAG 60.348 42.308 11.53 12.17 37.29 2.74
630 1213 2.552315 CAACATGTTACAGGTCCACCAC 59.448 50.000 11.53 0.00 38.89 4.16
635 1218 2.104111 TGTTACAGGTCCACCACAAGAG 59.896 50.000 0.00 0.00 38.89 2.85
651 1234 6.136071 CCACAAGAGAAGAACACATAAAACG 58.864 40.000 0.00 0.00 0.00 3.60
658 1241 6.899114 AGAAGAACACATAAAACGATGGTTC 58.101 36.000 0.00 0.00 37.32 3.62
667 1250 7.758076 CACATAAAACGATGGTTCTAGTCTACA 59.242 37.037 0.00 0.00 34.62 2.74
670 1253 5.916661 AACGATGGTTCTAGTCTACACAT 57.083 39.130 0.00 0.00 0.00 3.21
671 1254 5.502153 ACGATGGTTCTAGTCTACACATC 57.498 43.478 0.00 0.00 0.00 3.06
672 1255 4.338682 ACGATGGTTCTAGTCTACACATCC 59.661 45.833 0.00 0.00 31.94 3.51
673 1256 4.338400 CGATGGTTCTAGTCTACACATCCA 59.662 45.833 0.00 0.00 31.94 3.41
676 1259 6.620877 TGGTTCTAGTCTACACATCCAAAT 57.379 37.500 0.00 0.00 0.00 2.32
686 1269 6.801862 GTCTACACATCCAAATTTACTGCAAC 59.198 38.462 0.00 0.00 0.00 4.17
704 1287 7.644490 ACTGCAACGAACAAATATTTGAGTTA 58.356 30.769 30.18 17.33 40.55 2.24
705 1288 8.132362 ACTGCAACGAACAAATATTTGAGTTAA 58.868 29.630 30.18 20.21 40.55 2.01
706 1289 8.500837 TGCAACGAACAAATATTTGAGTTAAG 57.499 30.769 30.18 20.23 40.55 1.85
707 1290 8.346300 TGCAACGAACAAATATTTGAGTTAAGA 58.654 29.630 30.18 16.44 40.55 2.10
708 1291 9.176181 GCAACGAACAAATATTTGAGTTAAGAA 57.824 29.630 30.18 0.00 40.55 2.52
721 1304 6.897259 TGAGTTAAGAATATAACACCACGC 57.103 37.500 0.00 0.00 38.07 5.34
722 1305 5.813672 TGAGTTAAGAATATAACACCACGCC 59.186 40.000 0.00 0.00 38.07 5.68
723 1306 5.736813 AGTTAAGAATATAACACCACGCCA 58.263 37.500 0.00 0.00 38.07 5.69
724 1307 6.174760 AGTTAAGAATATAACACCACGCCAA 58.825 36.000 0.00 0.00 38.07 4.52
725 1308 6.826741 AGTTAAGAATATAACACCACGCCAAT 59.173 34.615 0.00 0.00 38.07 3.16
726 1309 5.499139 AAGAATATAACACCACGCCAATG 57.501 39.130 0.00 0.00 0.00 2.82
727 1310 4.776349 AGAATATAACACCACGCCAATGA 58.224 39.130 0.00 0.00 0.00 2.57
728 1311 5.376625 AGAATATAACACCACGCCAATGAT 58.623 37.500 0.00 0.00 0.00 2.45
729 1312 6.530120 AGAATATAACACCACGCCAATGATA 58.470 36.000 0.00 0.00 0.00 2.15
730 1313 7.168219 AGAATATAACACCACGCCAATGATAT 58.832 34.615 0.00 0.00 0.00 1.63
731 1314 8.318412 AGAATATAACACCACGCCAATGATATA 58.682 33.333 0.00 0.00 0.00 0.86
732 1315 9.109393 GAATATAACACCACGCCAATGATATAT 57.891 33.333 0.00 0.00 30.10 0.86
734 1317 9.764363 ATATAACACCACGCCAATGATATATAG 57.236 33.333 0.00 0.00 28.24 1.31
735 1318 4.832248 ACACCACGCCAATGATATATAGG 58.168 43.478 0.00 0.00 0.00 2.57
736 1319 4.530553 ACACCACGCCAATGATATATAGGA 59.469 41.667 0.00 0.00 0.00 2.94
737 1320 4.870426 CACCACGCCAATGATATATAGGAC 59.130 45.833 0.00 0.00 0.00 3.85
769 1352 7.079475 TGTTAGTAAGAAAAATTACAAGGCGC 58.921 34.615 0.00 0.00 37.98 6.53
790 1374 0.384669 ATACGTGCCTCTCGCTAACC 59.615 55.000 0.00 0.00 38.78 2.85
808 1411 1.278637 CTCGTGCGTGTTTTGGTCC 59.721 57.895 0.00 0.00 0.00 4.46
811 1414 2.902846 TGCGTGTTTTGGTCCCGG 60.903 61.111 0.00 0.00 0.00 5.73
829 1432 3.736100 TGTTTGCATGAGCGCCGG 61.736 61.111 2.29 0.00 46.23 6.13
869 1472 5.763204 AGGGTCCTATACGTAAAATGCAATG 59.237 40.000 0.00 0.00 0.00 2.82
880 1483 1.488390 AATGCAATGTAGGGGCCAAG 58.512 50.000 4.39 0.00 0.00 3.61
882 1485 0.114168 TGCAATGTAGGGGCCAAGTT 59.886 50.000 4.39 0.00 0.00 2.66
890 1493 0.704076 AGGGGCCAAGTTGCAATCTA 59.296 50.000 4.39 0.00 0.00 1.98
895 1498 2.289002 GGCCAAGTTGCAATCTAGATCG 59.711 50.000 5.51 0.00 0.00 3.69
902 1505 5.477510 AGTTGCAATCTAGATCGATGATCC 58.522 41.667 0.54 0.00 39.66 3.36
908 1511 3.691575 TCTAGATCGATGATCCAGGGTC 58.308 50.000 0.54 0.00 39.66 4.46
914 1517 4.609866 TCGATGATCCAGGGTCCTATAT 57.390 45.455 0.00 0.00 0.00 0.86
940 1543 8.107095 TGTAAAATGCAGGGACTAGTTTCTTAT 58.893 33.333 0.00 0.00 36.02 1.73
941 1544 7.396540 AAAATGCAGGGACTAGTTTCTTATG 57.603 36.000 0.00 0.00 36.02 1.90
943 1546 5.755409 TGCAGGGACTAGTTTCTTATGAA 57.245 39.130 0.00 0.00 36.02 2.57
951 1554 7.708752 GGGACTAGTTTCTTATGAATCTCTGTG 59.291 40.741 0.00 0.54 34.92 3.66
952 1555 8.254508 GGACTAGTTTCTTATGAATCTCTGTGT 58.745 37.037 0.00 2.88 34.92 3.72
960 1563 7.909267 TCTTATGAATCTCTGTGTAAAATGCG 58.091 34.615 0.00 0.00 0.00 4.73
961 1564 7.763985 TCTTATGAATCTCTGTGTAAAATGCGA 59.236 33.333 0.00 0.00 0.00 5.10
964 1567 7.841915 TGAATCTCTGTGTAAAATGCGATTA 57.158 32.000 0.00 0.00 0.00 1.75
965 1568 8.262715 TGAATCTCTGTGTAAAATGCGATTAA 57.737 30.769 0.00 0.00 0.00 1.40
967 1570 9.162793 GAATCTCTGTGTAAAATGCGATTAATG 57.837 33.333 0.00 0.00 0.00 1.90
968 1571 7.609760 TCTCTGTGTAAAATGCGATTAATGT 57.390 32.000 0.00 0.00 0.00 2.71
969 1572 8.039603 TCTCTGTGTAAAATGCGATTAATGTT 57.960 30.769 0.00 0.00 0.00 2.71
970 1573 8.511321 TCTCTGTGTAAAATGCGATTAATGTTT 58.489 29.630 0.00 0.00 0.00 2.83
971 1574 9.767684 CTCTGTGTAAAATGCGATTAATGTTTA 57.232 29.630 0.00 0.00 0.00 2.01
996 1599 4.790937 TGCCATTATCCAATGCAGTCTTA 58.209 39.130 0.00 0.00 40.28 2.10
1168 1777 2.669569 CACACAACCCCGCCTCTG 60.670 66.667 0.00 0.00 0.00 3.35
1199 1808 2.683933 GCGTCCCCTCCTTCCTCA 60.684 66.667 0.00 0.00 0.00 3.86
1201 1810 2.359967 CGTCCCCTCCTTCCTCACC 61.360 68.421 0.00 0.00 0.00 4.02
1206 1815 1.229658 CCTCCTTCCTCACCCCACT 60.230 63.158 0.00 0.00 0.00 4.00
1240 1849 4.840005 CTTTCCTCGCCCCTCCGC 62.840 72.222 0.00 0.00 0.00 5.54
1271 1880 2.185867 CCGTATCCACCACCACCG 59.814 66.667 0.00 0.00 0.00 4.94
1570 2203 1.130938 GAGTCCCTCGAAGAAGACGAC 59.869 57.143 0.00 0.00 42.54 4.34
1594 2227 2.597455 GAAGAGGATGAGGAGGAGGAG 58.403 57.143 0.00 0.00 0.00 3.69
1595 2228 0.859760 AGAGGATGAGGAGGAGGAGG 59.140 60.000 0.00 0.00 0.00 4.30
1596 2229 0.856982 GAGGATGAGGAGGAGGAGGA 59.143 60.000 0.00 0.00 0.00 3.71
1676 2309 1.075896 GACGGGATGGAGGAGGACT 60.076 63.158 0.00 0.00 0.00 3.85
1677 2310 1.075896 ACGGGATGGAGGAGGACTC 60.076 63.158 0.00 0.00 45.84 3.36
2002 2635 1.134401 GTCATCGTCATGGTGGTGGAT 60.134 52.381 0.00 0.00 0.00 3.41
2116 2749 3.563512 AGGCTTGTCCTTGTCGGT 58.436 55.556 0.00 0.00 44.75 4.69
2129 2762 1.354101 TGTCGGTACCAAGGTGGATT 58.646 50.000 13.54 0.00 40.96 3.01
2254 2887 2.549992 CCACAAGGATTTGTCGGTGAGA 60.550 50.000 0.00 0.00 45.53 3.27
2281 2914 6.908870 TTGATCTCATACGTCAAGGATTTG 57.091 37.500 0.00 0.00 35.57 2.32
2284 2917 3.055458 TCTCATACGTCAAGGATTTGGCA 60.055 43.478 0.00 0.00 38.86 4.92
2323 2956 2.740714 GGTGATCGGTGCGCAGAAC 61.741 63.158 12.22 4.97 0.00 3.01
2437 3070 3.721575 TGGGCATATTAAGGATGACAGGT 59.278 43.478 7.98 0.00 33.62 4.00
2467 3100 5.068636 CCTGCAAAGGCTAAGATGTATGAT 58.931 41.667 0.00 0.00 41.91 2.45
2488 3121 2.361992 CCTGGCTTGCTGCATCCA 60.362 61.111 18.84 18.84 45.15 3.41
2645 3278 1.398390 GAGTGGCTGACCTTTATTGCG 59.602 52.381 0.00 0.00 36.63 4.85
2649 3282 1.617740 GCTGACCTTTATTGCGTTGC 58.382 50.000 0.00 0.00 0.00 4.17
2654 3287 3.815962 TGACCTTTATTGCGTTGCAGTAA 59.184 39.130 3.06 3.06 40.61 2.24
2715 3348 7.454225 ACTAGAAATGGCTACTTTCTTCAGTT 58.546 34.615 12.95 0.00 41.78 3.16
2750 3383 9.944663 TGTCAACATTCTAGTTGTGTTTTAATC 57.055 29.630 6.70 0.95 46.78 1.75
2793 3426 9.386010 AGATACGTGGTCAAGATCTATAGATAC 57.614 37.037 15.31 9.63 34.37 2.24
2794 3427 9.386010 GATACGTGGTCAAGATCTATAGATACT 57.614 37.037 15.31 11.09 34.37 2.12
2795 3428 7.441890 ACGTGGTCAAGATCTATAGATACTG 57.558 40.000 15.31 14.40 34.37 2.74
2796 3429 6.431543 ACGTGGTCAAGATCTATAGATACTGG 59.568 42.308 15.31 11.43 34.37 4.00
2797 3430 6.655425 CGTGGTCAAGATCTATAGATACTGGA 59.345 42.308 15.31 13.26 34.37 3.86
2798 3431 7.361371 CGTGGTCAAGATCTATAGATACTGGAC 60.361 44.444 24.43 24.43 34.94 4.02
2844 3477 6.365247 TGACGATGCTAAAAGTCTAACACTTC 59.635 38.462 0.00 0.00 45.32 3.01
2845 3478 6.220930 ACGATGCTAAAAGTCTAACACTTCA 58.779 36.000 0.00 0.00 45.32 3.02
2847 3480 7.387948 ACGATGCTAAAAGTCTAACACTTCATT 59.612 33.333 0.00 0.00 45.32 2.57
2848 3481 7.900352 CGATGCTAAAAGTCTAACACTTCATTC 59.100 37.037 0.00 0.00 45.32 2.67
2849 3482 7.117241 TGCTAAAAGTCTAACACTTCATTCG 57.883 36.000 0.00 0.00 45.32 3.34
2850 3483 6.704493 TGCTAAAAGTCTAACACTTCATTCGT 59.296 34.615 0.00 0.00 45.32 3.85
2950 3587 4.463891 AGCACTTGGATGATTTTAACCAGG 59.536 41.667 0.00 0.00 35.97 4.45
2996 3633 8.833231 TGACTTTACTCTTGAAAGACCTTATG 57.167 34.615 2.31 0.00 37.35 1.90
3013 3650 4.943705 CCTTATGCACTGAATACACTTGGT 59.056 41.667 0.00 0.00 0.00 3.67
3033 3670 6.139679 TGGTCAACTCTAATCCCTTGAAAT 57.860 37.500 0.00 0.00 0.00 2.17
3183 3821 2.483014 TCCACATTGGAGGGTTAACG 57.517 50.000 0.00 0.00 42.67 3.18
3193 3831 2.178235 GGGTTAACGCGCCTGGATC 61.178 63.158 5.73 0.00 0.00 3.36
3210 3848 5.009610 CCTGGATCTACTAGAAGCTTCAGTC 59.990 48.000 27.57 14.96 0.00 3.51
3213 3851 5.009610 GGATCTACTAGAAGCTTCAGTCCAG 59.990 48.000 27.57 20.05 0.00 3.86
3291 3929 1.196808 GAAAATGCCGAAGAACTGCGA 59.803 47.619 3.56 0.00 0.00 5.10
3354 3993 2.375174 TCCAACCTGGTTATGTTGCTCT 59.625 45.455 12.53 0.00 40.34 4.09
3367 4006 9.294030 GGTTATGTTGCTCTTGAGAATAAATTG 57.706 33.333 1.30 0.00 0.00 2.32
3431 4213 5.253330 TGGAAGTAAGGTTGCTTTATGGAG 58.747 41.667 0.00 0.00 33.17 3.86
3499 4282 5.018695 ACTTTGTTCGTCTGCTTTAATCG 57.981 39.130 0.00 0.00 0.00 3.34
3510 4293 3.609853 TGCTTTAATCGAAGGACTGCAT 58.390 40.909 0.00 0.00 0.00 3.96
3511 4294 4.765273 TGCTTTAATCGAAGGACTGCATA 58.235 39.130 0.00 0.00 0.00 3.14
3512 4295 4.811024 TGCTTTAATCGAAGGACTGCATAG 59.189 41.667 0.00 0.00 0.00 2.23
3513 4296 4.319118 GCTTTAATCGAAGGACTGCATAGC 60.319 45.833 0.00 0.00 0.00 2.97
3514 4297 2.988010 AATCGAAGGACTGCATAGCA 57.012 45.000 0.00 0.00 36.92 3.49
3753 4537 1.195448 CTGCTTTTACTGTCCAGTGCG 59.805 52.381 10.15 0.00 42.52 5.34
3782 4566 7.879677 TGTAGCTGGAGTTTATCATCCATAATG 59.120 37.037 0.00 0.00 44.45 1.90
3917 4705 1.175983 GGACAGAGAGGCGGATCGAT 61.176 60.000 0.00 0.00 0.00 3.59
3949 4737 4.701663 CTGGGACGTGAACAGCAT 57.298 55.556 0.00 0.00 0.00 3.79
4070 4858 2.029666 GCGATGATCCTCCACCGG 59.970 66.667 0.00 0.00 0.00 5.28
4140 4928 3.917760 CCATCGGCGAGGAGACCC 61.918 72.222 24.40 0.00 0.00 4.46
4151 4939 2.112190 GAGGAGACCCGGAAGAAGAAT 58.888 52.381 0.73 0.00 37.58 2.40
4184 4972 2.091112 CCAACAGCAGAGCGACGAG 61.091 63.158 0.00 0.00 0.00 4.18
4251 5049 5.432645 TGTGAGGTGACAATAGTGAAAACA 58.567 37.500 0.00 0.00 0.00 2.83
4270 5068 9.337396 TGAAAACATTGTATGAGAACTGTTAGT 57.663 29.630 0.00 0.00 0.00 2.24
4328 5126 2.755929 GAGCAGTACTCCGGCAAAG 58.244 57.895 0.00 0.00 39.75 2.77
4330 5128 1.192146 AGCAGTACTCCGGCAAAGGA 61.192 55.000 0.00 0.00 38.80 3.36
4336 5134 1.568504 ACTCCGGCAAAGGACTCATA 58.431 50.000 0.00 0.00 36.14 2.15
4414 5225 4.712476 CCACTGATAATTGAGAGGAAGGG 58.288 47.826 0.00 0.00 0.00 3.95
4447 5258 1.851304 CCCCCTTGCACACAATACAT 58.149 50.000 0.00 0.00 34.61 2.29
4448 5259 3.011566 CCCCCTTGCACACAATACATA 57.988 47.619 0.00 0.00 34.61 2.29
4449 5260 2.687935 CCCCCTTGCACACAATACATAC 59.312 50.000 0.00 0.00 34.61 2.39
4450 5261 3.351740 CCCCTTGCACACAATACATACA 58.648 45.455 0.00 0.00 34.61 2.29
4494 5307 1.202604 TCTTGTTCCCTGACGTTGACC 60.203 52.381 0.00 0.00 0.00 4.02
4510 5326 2.061790 GACCCCATGGCCTCATCCTC 62.062 65.000 6.09 0.00 33.59 3.71
4511 5327 2.838467 CCCCATGGCCTCATCCTCC 61.838 68.421 6.09 0.00 0.00 4.30
4512 5328 1.773391 CCCATGGCCTCATCCTCCT 60.773 63.158 6.09 0.00 0.00 3.69
4513 5329 1.358830 CCCATGGCCTCATCCTCCTT 61.359 60.000 6.09 0.00 0.00 3.36
4514 5330 0.554792 CCATGGCCTCATCCTCCTTT 59.445 55.000 3.32 0.00 0.00 3.11
4515 5331 1.063417 CCATGGCCTCATCCTCCTTTT 60.063 52.381 3.32 0.00 0.00 2.27
4516 5332 2.175499 CCATGGCCTCATCCTCCTTTTA 59.825 50.000 3.32 0.00 0.00 1.52
4517 5333 3.181425 CCATGGCCTCATCCTCCTTTTAT 60.181 47.826 3.32 0.00 0.00 1.40
4518 5334 4.477249 CATGGCCTCATCCTCCTTTTATT 58.523 43.478 3.32 0.00 0.00 1.40
4519 5335 4.170468 TGGCCTCATCCTCCTTTTATTC 57.830 45.455 3.32 0.00 0.00 1.75
4520 5336 3.142174 GGCCTCATCCTCCTTTTATTCG 58.858 50.000 0.00 0.00 0.00 3.34
4521 5337 3.142174 GCCTCATCCTCCTTTTATTCGG 58.858 50.000 0.00 0.00 0.00 4.30
4522 5338 3.181454 GCCTCATCCTCCTTTTATTCGGA 60.181 47.826 0.00 0.00 0.00 4.55
4523 5339 4.381411 CCTCATCCTCCTTTTATTCGGAC 58.619 47.826 0.00 0.00 0.00 4.79
4524 5340 4.141711 CCTCATCCTCCTTTTATTCGGACA 60.142 45.833 0.00 0.00 0.00 4.02
4525 5341 4.766375 TCATCCTCCTTTTATTCGGACAC 58.234 43.478 0.00 0.00 0.00 3.67
4526 5342 4.224147 TCATCCTCCTTTTATTCGGACACA 59.776 41.667 0.00 0.00 0.00 3.72
4527 5343 4.837093 TCCTCCTTTTATTCGGACACAT 57.163 40.909 0.00 0.00 0.00 3.21
4528 5344 4.513442 TCCTCCTTTTATTCGGACACATG 58.487 43.478 0.00 0.00 0.00 3.21
4529 5345 4.224147 TCCTCCTTTTATTCGGACACATGA 59.776 41.667 0.00 0.00 0.00 3.07
4530 5346 4.332819 CCTCCTTTTATTCGGACACATGAC 59.667 45.833 0.00 0.00 0.00 3.06
4531 5347 4.900684 TCCTTTTATTCGGACACATGACA 58.099 39.130 0.00 0.00 0.00 3.58
4532 5348 4.935205 TCCTTTTATTCGGACACATGACAG 59.065 41.667 0.00 0.00 0.00 3.51
4556 5372 4.829064 TGTGCCAACAGTATTTTCAGTC 57.171 40.909 0.00 0.00 0.00 3.51
4560 5376 4.072131 GCCAACAGTATTTTCAGTCAGGA 58.928 43.478 0.00 0.00 0.00 3.86
4561 5377 4.154918 GCCAACAGTATTTTCAGTCAGGAG 59.845 45.833 0.00 0.00 0.00 3.69
4562 5378 5.308825 CCAACAGTATTTTCAGTCAGGAGT 58.691 41.667 0.00 0.00 0.00 3.85
4563 5379 5.409826 CCAACAGTATTTTCAGTCAGGAGTC 59.590 44.000 0.00 0.00 0.00 3.36
4564 5380 5.808366 ACAGTATTTTCAGTCAGGAGTCA 57.192 39.130 0.00 0.00 0.00 3.41
4565 5381 5.788450 ACAGTATTTTCAGTCAGGAGTCAG 58.212 41.667 0.00 0.00 0.00 3.51
4566 5382 5.540337 ACAGTATTTTCAGTCAGGAGTCAGA 59.460 40.000 0.00 0.00 0.00 3.27
4567 5383 6.042093 ACAGTATTTTCAGTCAGGAGTCAGAA 59.958 38.462 0.00 0.00 0.00 3.02
4568 5384 6.589523 CAGTATTTTCAGTCAGGAGTCAGAAG 59.410 42.308 0.00 0.00 0.00 2.85
4569 5385 3.393089 TTTCAGTCAGGAGTCAGAAGC 57.607 47.619 0.00 0.00 0.00 3.86
4747 5575 1.906574 CCTCCTGGGTTTACTAGTGCA 59.093 52.381 5.39 0.00 0.00 4.57
4963 5796 2.636647 CAAAGGTTTGTTGGGGCAAT 57.363 45.000 0.00 0.00 33.59 3.56
4967 5800 0.034756 GGTTTGTTGGGGCAATGGAC 59.965 55.000 0.00 0.00 0.00 4.02
4968 5801 0.755686 GTTTGTTGGGGCAATGGACA 59.244 50.000 0.00 0.00 0.00 4.02
4972 5805 1.905843 TTGGGGCAATGGACAACGG 60.906 57.895 0.00 0.00 0.00 4.44
5059 5901 3.115892 CACCACGGCGCGTATGTT 61.116 61.111 6.90 0.00 38.32 2.71
5075 5917 4.145243 CGTATGTTTATCGCGATGTAACGT 59.855 41.667 31.05 30.17 35.59 3.99
5174 6017 7.598493 GCCACATAAGATATCTCTCTCACTTTC 59.402 40.741 5.51 0.00 0.00 2.62
5228 6131 2.906354 AGCGCCTACCTTCAAAGTATG 58.094 47.619 2.29 0.00 0.00 2.39
5236 6139 2.041216 ACCTTCAAAGTATGACCCCCAC 59.959 50.000 0.00 0.00 37.92 4.61
5438 6342 2.898472 ATAGCCGCCCTTGTCCTCCT 62.898 60.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 9.356649 ACCTTATATTCTGAAATGGAGGGATAT 57.643 33.333 13.92 1.03 30.17 1.63
36 38 8.605947 CACCTTATATTCTGAAATGGAGGGATA 58.394 37.037 13.92 0.00 30.17 2.59
37 39 7.074237 ACACCTTATATTCTGAAATGGAGGGAT 59.926 37.037 13.92 3.60 30.17 3.85
38 40 6.389869 ACACCTTATATTCTGAAATGGAGGGA 59.610 38.462 13.92 0.00 30.17 4.20
39 41 6.605119 ACACCTTATATTCTGAAATGGAGGG 58.395 40.000 13.92 7.31 30.17 4.30
40 42 9.799106 AATACACCTTATATTCTGAAATGGAGG 57.201 33.333 0.00 3.29 0.00 4.30
42 44 9.573166 CCAATACACCTTATATTCTGAAATGGA 57.427 33.333 0.00 0.00 0.00 3.41
43 45 9.354673 ACCAATACACCTTATATTCTGAAATGG 57.645 33.333 0.00 0.00 0.00 3.16
47 49 9.403583 GGAAACCAATACACCTTATATTCTGAA 57.596 33.333 0.00 0.00 0.00 3.02
48 50 8.553153 TGGAAACCAATACACCTTATATTCTGA 58.447 33.333 0.00 0.00 0.00 3.27
49 51 8.746052 TGGAAACCAATACACCTTATATTCTG 57.254 34.615 0.00 0.00 0.00 3.02
50 52 9.354673 CATGGAAACCAATACACCTTATATTCT 57.645 33.333 0.00 0.00 36.95 2.40
51 53 9.349713 TCATGGAAACCAATACACCTTATATTC 57.650 33.333 0.00 0.00 36.95 1.75
52 54 9.707957 TTCATGGAAACCAATACACCTTATATT 57.292 29.630 0.00 0.00 36.95 1.28
53 55 9.707957 TTTCATGGAAACCAATACACCTTATAT 57.292 29.630 0.00 0.00 36.95 0.86
54 56 9.184523 CTTTCATGGAAACCAATACACCTTATA 57.815 33.333 0.00 0.00 36.95 0.98
55 57 7.673926 ACTTTCATGGAAACCAATACACCTTAT 59.326 33.333 0.00 0.00 36.95 1.73
56 58 7.007723 ACTTTCATGGAAACCAATACACCTTA 58.992 34.615 0.00 0.00 36.95 2.69
57 59 5.838521 ACTTTCATGGAAACCAATACACCTT 59.161 36.000 0.00 0.00 36.95 3.50
58 60 5.393866 ACTTTCATGGAAACCAATACACCT 58.606 37.500 0.00 0.00 36.95 4.00
59 61 5.242838 TGACTTTCATGGAAACCAATACACC 59.757 40.000 0.00 0.00 36.95 4.16
60 62 6.325919 TGACTTTCATGGAAACCAATACAC 57.674 37.500 0.00 0.00 36.95 2.90
61 63 6.968263 TTGACTTTCATGGAAACCAATACA 57.032 33.333 0.00 0.00 36.95 2.29
62 64 7.433680 AGTTTGACTTTCATGGAAACCAATAC 58.566 34.615 0.00 0.46 36.95 1.89
63 65 7.595819 AGTTTGACTTTCATGGAAACCAATA 57.404 32.000 0.00 0.00 36.95 1.90
64 66 6.484364 AGTTTGACTTTCATGGAAACCAAT 57.516 33.333 0.00 0.00 36.95 3.16
65 67 5.930837 AGTTTGACTTTCATGGAAACCAA 57.069 34.783 0.00 0.00 36.95 3.67
66 68 5.930837 AAGTTTGACTTTCATGGAAACCA 57.069 34.783 0.00 0.00 34.11 3.67
67 69 7.433680 ACATAAGTTTGACTTTCATGGAAACC 58.566 34.615 0.00 0.00 39.51 3.27
70 72 9.295825 ACATACATAAGTTTGACTTTCATGGAA 57.704 29.630 0.00 0.00 39.51 3.53
71 73 8.862325 ACATACATAAGTTTGACTTTCATGGA 57.138 30.769 0.00 0.00 39.51 3.41
72 74 9.912634 AAACATACATAAGTTTGACTTTCATGG 57.087 29.630 0.00 0.00 39.51 3.66
169 171 9.645128 ACCAAATTTGTATCATTAGATCCATCA 57.355 29.630 16.73 0.00 35.67 3.07
180 182 9.905713 ACATCTACAGTACCAAATTTGTATCAT 57.094 29.630 16.73 1.15 0.00 2.45
181 183 9.733556 AACATCTACAGTACCAAATTTGTATCA 57.266 29.630 16.73 0.00 0.00 2.15
182 184 9.988350 CAACATCTACAGTACCAAATTTGTATC 57.012 33.333 16.73 6.54 0.00 2.24
183 185 9.733556 TCAACATCTACAGTACCAAATTTGTAT 57.266 29.630 16.73 7.34 0.00 2.29
184 186 9.733556 ATCAACATCTACAGTACCAAATTTGTA 57.266 29.630 16.73 6.86 0.00 2.41
185 187 8.635765 ATCAACATCTACAGTACCAAATTTGT 57.364 30.769 16.73 7.77 0.00 2.83
204 206 9.679661 TGACCAAGCTTTAAGAATATATCAACA 57.320 29.630 0.00 0.00 0.00 3.33
223 225 3.896648 ATACGTGCTTGTTTGACCAAG 57.103 42.857 0.00 0.00 43.76 3.61
224 226 4.096532 TCAAATACGTGCTTGTTTGACCAA 59.903 37.500 0.00 0.00 36.11 3.67
225 227 3.628032 TCAAATACGTGCTTGTTTGACCA 59.372 39.130 0.00 0.00 36.11 4.02
226 228 4.217754 TCAAATACGTGCTTGTTTGACC 57.782 40.909 0.00 0.00 36.11 4.02
228 230 5.493133 AAGTCAAATACGTGCTTGTTTGA 57.507 34.783 0.00 4.72 38.01 2.69
229 231 7.672351 TTAAAGTCAAATACGTGCTTGTTTG 57.328 32.000 0.00 2.36 33.91 2.93
230 232 8.690680 TTTTAAAGTCAAATACGTGCTTGTTT 57.309 26.923 0.00 2.36 0.00 2.83
231 233 8.690680 TTTTTAAAGTCAAATACGTGCTTGTT 57.309 26.923 0.00 0.00 0.00 2.83
260 262 9.367160 CCTCCATTCCAAAATATAAGGTGTATT 57.633 33.333 0.00 0.00 0.00 1.89
261 263 7.950124 CCCTCCATTCCAAAATATAAGGTGTAT 59.050 37.037 0.00 0.00 0.00 2.29
262 264 7.129660 TCCCTCCATTCCAAAATATAAGGTGTA 59.870 37.037 0.00 0.00 0.00 2.90
263 265 6.068498 TCCCTCCATTCCAAAATATAAGGTGT 60.068 38.462 0.00 0.00 0.00 4.16
264 266 6.372931 TCCCTCCATTCCAAAATATAAGGTG 58.627 40.000 0.00 0.00 0.00 4.00
265 267 6.162241 ACTCCCTCCATTCCAAAATATAAGGT 59.838 38.462 0.00 0.00 0.00 3.50
266 268 6.614657 ACTCCCTCCATTCCAAAATATAAGG 58.385 40.000 0.00 0.00 0.00 2.69
267 269 9.813826 AATACTCCCTCCATTCCAAAATATAAG 57.186 33.333 0.00 0.00 0.00 1.73
270 272 8.960064 ACTAATACTCCCTCCATTCCAAAATAT 58.040 33.333 0.00 0.00 0.00 1.28
271 273 8.344939 ACTAATACTCCCTCCATTCCAAAATA 57.655 34.615 0.00 0.00 0.00 1.40
272 274 7.226059 ACTAATACTCCCTCCATTCCAAAAT 57.774 36.000 0.00 0.00 0.00 1.82
273 275 6.652205 ACTAATACTCCCTCCATTCCAAAA 57.348 37.500 0.00 0.00 0.00 2.44
274 276 6.652205 AACTAATACTCCCTCCATTCCAAA 57.348 37.500 0.00 0.00 0.00 3.28
275 277 6.652205 AAACTAATACTCCCTCCATTCCAA 57.348 37.500 0.00 0.00 0.00 3.53
276 278 6.329197 CCTAAACTAATACTCCCTCCATTCCA 59.671 42.308 0.00 0.00 0.00 3.53
277 279 6.239915 CCCTAAACTAATACTCCCTCCATTCC 60.240 46.154 0.00 0.00 0.00 3.01
278 280 6.329460 ACCCTAAACTAATACTCCCTCCATTC 59.671 42.308 0.00 0.00 0.00 2.67
279 281 6.218053 ACCCTAAACTAATACTCCCTCCATT 58.782 40.000 0.00 0.00 0.00 3.16
280 282 5.800653 ACCCTAAACTAATACTCCCTCCAT 58.199 41.667 0.00 0.00 0.00 3.41
281 283 5.230746 ACCCTAAACTAATACTCCCTCCA 57.769 43.478 0.00 0.00 0.00 3.86
282 284 7.071917 TCTTACCCTAAACTAATACTCCCTCC 58.928 42.308 0.00 0.00 0.00 4.30
283 285 8.544687 TTCTTACCCTAAACTAATACTCCCTC 57.455 38.462 0.00 0.00 0.00 4.30
284 286 9.516788 AATTCTTACCCTAAACTAATACTCCCT 57.483 33.333 0.00 0.00 0.00 4.20
288 290 9.916360 CCCAAATTCTTACCCTAAACTAATACT 57.084 33.333 0.00 0.00 0.00 2.12
289 291 9.690913 ACCCAAATTCTTACCCTAAACTAATAC 57.309 33.333 0.00 0.00 0.00 1.89
317 319 3.216187 TCTTTGGGATGAACCGTTTCA 57.784 42.857 0.00 0.00 45.93 2.69
318 320 3.057526 CCTTCTTTGGGATGAACCGTTTC 60.058 47.826 0.00 0.00 40.11 2.78
319 321 2.890945 CCTTCTTTGGGATGAACCGTTT 59.109 45.455 0.00 0.00 40.11 3.60
377 379 4.389687 GCCAATTGCAACTTGGAATAACAG 59.610 41.667 29.35 11.96 44.95 3.16
411 413 3.546670 GCGTGTATTGGTCGACTAAGAAG 59.453 47.826 19.43 10.88 0.00 2.85
421 423 1.877443 ACTTGGTTGCGTGTATTGGTC 59.123 47.619 0.00 0.00 0.00 4.02
423 425 2.292016 TCAACTTGGTTGCGTGTATTGG 59.708 45.455 5.63 0.00 42.55 3.16
431 433 1.264288 GGAAGACTCAACTTGGTTGCG 59.736 52.381 5.63 2.67 42.55 4.85
443 445 3.655615 TCTAGTGGAGGAGGAAGACTC 57.344 52.381 0.00 0.00 45.84 3.36
452 454 5.721960 ACATAAGCTCTTTTCTAGTGGAGGA 59.278 40.000 0.00 0.00 0.00 3.71
453 455 5.983540 ACATAAGCTCTTTTCTAGTGGAGG 58.016 41.667 0.00 0.00 0.00 4.30
454 456 6.872920 AGACATAAGCTCTTTTCTAGTGGAG 58.127 40.000 0.00 0.00 0.00 3.86
455 457 6.859112 AGACATAAGCTCTTTTCTAGTGGA 57.141 37.500 0.00 0.00 0.00 4.02
456 458 7.099764 TGAAGACATAAGCTCTTTTCTAGTGG 58.900 38.462 0.00 0.00 0.00 4.00
457 459 8.715191 ATGAAGACATAAGCTCTTTTCTAGTG 57.285 34.615 0.00 0.00 34.71 2.74
458 460 7.984617 GGATGAAGACATAAGCTCTTTTCTAGT 59.015 37.037 0.00 0.00 36.82 2.57
459 461 8.203485 AGGATGAAGACATAAGCTCTTTTCTAG 58.797 37.037 0.00 0.00 36.82 2.43
460 462 8.083828 AGGATGAAGACATAAGCTCTTTTCTA 57.916 34.615 0.00 0.00 36.82 2.10
461 463 6.956497 AGGATGAAGACATAAGCTCTTTTCT 58.044 36.000 0.00 0.00 36.82 2.52
462 464 6.259829 GGAGGATGAAGACATAAGCTCTTTTC 59.740 42.308 0.00 0.00 36.82 2.29
463 465 6.069731 AGGAGGATGAAGACATAAGCTCTTTT 60.070 38.462 0.00 0.00 36.82 2.27
464 466 5.428131 AGGAGGATGAAGACATAAGCTCTTT 59.572 40.000 0.00 0.00 36.82 2.52
465 467 4.968080 AGGAGGATGAAGACATAAGCTCTT 59.032 41.667 0.00 0.00 36.82 2.85
466 468 4.555689 AGGAGGATGAAGACATAAGCTCT 58.444 43.478 0.00 0.00 36.82 4.09
467 469 4.588528 AGAGGAGGATGAAGACATAAGCTC 59.411 45.833 0.00 0.00 36.82 4.09
468 470 4.555689 AGAGGAGGATGAAGACATAAGCT 58.444 43.478 0.00 0.00 36.82 3.74
469 471 4.558496 CGAGAGGAGGATGAAGACATAAGC 60.558 50.000 0.00 0.00 36.82 3.09
470 472 4.582656 ACGAGAGGAGGATGAAGACATAAG 59.417 45.833 0.00 0.00 36.82 1.73
471 473 4.537751 ACGAGAGGAGGATGAAGACATAA 58.462 43.478 0.00 0.00 36.82 1.90
472 474 4.138290 GACGAGAGGAGGATGAAGACATA 58.862 47.826 0.00 0.00 36.82 2.29
473 475 2.955660 GACGAGAGGAGGATGAAGACAT 59.044 50.000 0.00 0.00 39.67 3.06
474 476 2.370349 GACGAGAGGAGGATGAAGACA 58.630 52.381 0.00 0.00 0.00 3.41
475 477 1.332375 CGACGAGAGGAGGATGAAGAC 59.668 57.143 0.00 0.00 0.00 3.01
476 478 1.669604 CGACGAGAGGAGGATGAAGA 58.330 55.000 0.00 0.00 0.00 2.87
477 479 0.665835 CCGACGAGAGGAGGATGAAG 59.334 60.000 0.00 0.00 34.33 3.02
478 480 1.384989 GCCGACGAGAGGAGGATGAA 61.385 60.000 0.00 0.00 34.33 2.57
479 481 1.824329 GCCGACGAGAGGAGGATGA 60.824 63.158 0.00 0.00 34.33 2.92
480 482 2.725008 GCCGACGAGAGGAGGATG 59.275 66.667 0.00 0.00 34.33 3.51
481 483 2.902846 CGCCGACGAGAGGAGGAT 60.903 66.667 0.00 0.00 43.93 3.24
506 508 3.150767 TGTTTTGAAATAGGGTGGACCG 58.849 45.455 0.00 0.00 46.96 4.79
544 1127 7.123098 TGAAATGTCCAATAAGTCTTCATGCAT 59.877 33.333 0.00 0.00 0.00 3.96
551 1134 6.264518 ACGGTTTGAAATGTCCAATAAGTCTT 59.735 34.615 0.00 0.00 0.00 3.01
561 1144 6.210078 TGACAATTTACGGTTTGAAATGTCC 58.790 36.000 12.83 0.00 30.48 4.02
573 1156 7.860613 TGCATACATCTATTGACAATTTACGG 58.139 34.615 5.89 0.00 0.00 4.02
574 1157 9.373750 CTTGCATACATCTATTGACAATTTACG 57.626 33.333 5.89 0.00 0.00 3.18
602 1185 5.305902 TGGACCTGTAACATGTTGAAGTCTA 59.694 40.000 21.42 15.62 0.00 2.59
621 1204 2.158813 TGTTCTTCTCTTGTGGTGGACC 60.159 50.000 0.00 0.00 0.00 4.46
630 1213 7.017645 CCATCGTTTTATGTGTTCTTCTCTTG 58.982 38.462 0.00 0.00 0.00 3.02
635 1218 6.899114 AGAACCATCGTTTTATGTGTTCTTC 58.101 36.000 11.56 0.00 40.53 2.87
651 1234 5.854010 TGGATGTGTAGACTAGAACCATC 57.146 43.478 0.00 7.03 0.00 3.51
658 1241 7.549134 TGCAGTAAATTTGGATGTGTAGACTAG 59.451 37.037 0.00 0.00 0.00 2.57
667 1250 5.219633 GTTCGTTGCAGTAAATTTGGATGT 58.780 37.500 0.00 0.00 0.00 3.06
670 1253 4.902443 TGTTCGTTGCAGTAAATTTGGA 57.098 36.364 0.00 0.00 0.00 3.53
671 1254 5.957910 TTTGTTCGTTGCAGTAAATTTGG 57.042 34.783 0.00 0.00 0.00 3.28
676 1259 8.132362 ACTCAAATATTTGTTCGTTGCAGTAAA 58.868 29.630 23.95 2.91 39.18 2.01
704 1287 5.189928 TCATTGGCGTGGTGTTATATTCTT 58.810 37.500 0.00 0.00 0.00 2.52
705 1288 4.776349 TCATTGGCGTGGTGTTATATTCT 58.224 39.130 0.00 0.00 0.00 2.40
706 1289 5.689383 ATCATTGGCGTGGTGTTATATTC 57.311 39.130 0.00 0.00 0.00 1.75
708 1291 9.764363 CTATATATCATTGGCGTGGTGTTATAT 57.236 33.333 0.00 0.00 31.15 0.86
709 1292 8.201464 CCTATATATCATTGGCGTGGTGTTATA 58.799 37.037 0.00 0.00 0.00 0.98
710 1293 7.047891 CCTATATATCATTGGCGTGGTGTTAT 58.952 38.462 0.00 0.00 0.00 1.89
711 1294 6.211785 TCCTATATATCATTGGCGTGGTGTTA 59.788 38.462 0.00 0.00 0.00 2.41
712 1295 5.012664 TCCTATATATCATTGGCGTGGTGTT 59.987 40.000 0.00 0.00 0.00 3.32
713 1296 4.530553 TCCTATATATCATTGGCGTGGTGT 59.469 41.667 0.00 0.00 0.00 4.16
714 1297 4.870426 GTCCTATATATCATTGGCGTGGTG 59.130 45.833 0.00 0.00 0.00 4.17
715 1298 4.081087 GGTCCTATATATCATTGGCGTGGT 60.081 45.833 0.00 0.00 0.00 4.16
716 1299 4.162320 AGGTCCTATATATCATTGGCGTGG 59.838 45.833 0.00 0.00 0.00 4.94
717 1300 5.344743 AGGTCCTATATATCATTGGCGTG 57.655 43.478 0.00 0.00 0.00 5.34
718 1301 5.363005 GGTAGGTCCTATATATCATTGGCGT 59.637 44.000 0.82 0.00 0.00 5.68
719 1302 5.221461 GGGTAGGTCCTATATATCATTGGCG 60.221 48.000 0.82 0.00 36.25 5.69
720 1303 5.905913 AGGGTAGGTCCTATATATCATTGGC 59.094 44.000 0.82 0.00 34.92 4.52
721 1304 6.903534 ACAGGGTAGGTCCTATATATCATTGG 59.096 42.308 0.82 0.00 34.92 3.16
722 1305 7.979786 ACAGGGTAGGTCCTATATATCATTG 57.020 40.000 0.82 0.00 34.92 2.82
723 1306 9.716556 CTAACAGGGTAGGTCCTATATATCATT 57.283 37.037 0.82 0.00 34.92 2.57
724 1307 8.857997 ACTAACAGGGTAGGTCCTATATATCAT 58.142 37.037 0.82 0.00 34.92 2.45
725 1308 8.240881 ACTAACAGGGTAGGTCCTATATATCA 57.759 38.462 0.82 0.00 34.92 2.15
728 1311 9.410550 TCTTACTAACAGGGTAGGTCCTATATA 57.589 37.037 0.82 0.00 34.92 0.86
729 1312 8.298172 TCTTACTAACAGGGTAGGTCCTATAT 57.702 38.462 0.82 0.00 34.92 0.86
730 1313 7.712142 TCTTACTAACAGGGTAGGTCCTATA 57.288 40.000 0.82 0.00 34.92 1.31
731 1314 6.603110 TCTTACTAACAGGGTAGGTCCTAT 57.397 41.667 0.82 0.00 34.92 2.57
732 1315 6.407320 TTCTTACTAACAGGGTAGGTCCTA 57.593 41.667 0.00 0.00 34.92 2.94
733 1316 4.961440 TCTTACTAACAGGGTAGGTCCT 57.039 45.455 0.00 0.00 37.71 3.85
734 1317 6.364568 TTTTCTTACTAACAGGGTAGGTCC 57.635 41.667 0.00 0.00 0.00 4.46
735 1318 8.859236 AATTTTTCTTACTAACAGGGTAGGTC 57.141 34.615 0.00 0.00 0.00 3.85
736 1319 9.730705 GTAATTTTTCTTACTAACAGGGTAGGT 57.269 33.333 0.00 0.00 0.00 3.08
737 1320 9.729281 TGTAATTTTTCTTACTAACAGGGTAGG 57.271 33.333 0.00 0.00 33.62 3.18
790 1374 1.278637 GGACCAAAACACGCACGAG 59.721 57.895 0.00 0.00 0.00 4.18
797 1381 0.818938 AAACACCGGGACCAAAACAC 59.181 50.000 6.32 0.00 0.00 3.32
798 1382 0.818296 CAAACACCGGGACCAAAACA 59.182 50.000 6.32 0.00 0.00 2.83
799 1383 0.528901 GCAAACACCGGGACCAAAAC 60.529 55.000 6.32 0.00 0.00 2.43
808 1411 2.176546 CGCTCATGCAAACACCGG 59.823 61.111 0.00 0.00 39.64 5.28
811 1414 2.502510 CGGCGCTCATGCAAACAC 60.503 61.111 7.64 0.00 39.64 3.32
855 1458 2.425668 GCCCCTACATTGCATTTTACGT 59.574 45.455 0.00 0.00 0.00 3.57
869 1472 0.817654 GATTGCAACTTGGCCCCTAC 59.182 55.000 0.00 0.00 0.00 3.18
880 1483 5.233225 TGGATCATCGATCTAGATTGCAAC 58.767 41.667 14.39 0.00 38.91 4.17
882 1485 4.081807 CCTGGATCATCGATCTAGATTGCA 60.082 45.833 16.32 4.73 46.13 4.08
890 1493 1.148867 AGGACCCTGGATCATCGATCT 59.851 52.381 0.00 0.00 38.91 2.75
895 1498 7.496346 TTTACATATAGGACCCTGGATCATC 57.504 40.000 0.00 0.00 0.00 2.92
902 1505 5.707298 CCTGCATTTTACATATAGGACCCTG 59.293 44.000 0.00 0.00 0.00 4.45
908 1511 7.680730 ACTAGTCCCTGCATTTTACATATAGG 58.319 38.462 0.00 0.00 0.00 2.57
914 1517 5.876357 AGAAACTAGTCCCTGCATTTTACA 58.124 37.500 0.00 0.00 0.00 2.41
940 1543 6.741992 AATCGCATTTTACACAGAGATTCA 57.258 33.333 0.00 0.00 0.00 2.57
941 1544 9.162793 CATTAATCGCATTTTACACAGAGATTC 57.837 33.333 0.00 0.00 33.60 2.52
943 1546 8.213518 ACATTAATCGCATTTTACACAGAGAT 57.786 30.769 0.00 0.00 0.00 2.75
958 1561 9.450807 GGATAATGGCATATAAACATTAATCGC 57.549 33.333 0.00 0.00 39.61 4.58
964 1567 8.595421 TGCATTGGATAATGGCATATAAACATT 58.405 29.630 0.00 0.00 43.12 2.71
965 1568 8.136563 TGCATTGGATAATGGCATATAAACAT 57.863 30.769 0.00 0.00 43.12 2.71
967 1570 7.605449 ACTGCATTGGATAATGGCATATAAAC 58.395 34.615 0.00 0.00 43.12 2.01
968 1571 7.670979 AGACTGCATTGGATAATGGCATATAAA 59.329 33.333 0.00 0.00 43.12 1.40
969 1572 7.177184 AGACTGCATTGGATAATGGCATATAA 58.823 34.615 0.00 0.00 43.12 0.98
970 1573 6.724351 AGACTGCATTGGATAATGGCATATA 58.276 36.000 0.00 0.00 43.12 0.86
971 1574 5.577100 AGACTGCATTGGATAATGGCATAT 58.423 37.500 0.00 0.00 43.12 1.78
972 1575 4.989277 AGACTGCATTGGATAATGGCATA 58.011 39.130 0.00 0.00 43.12 3.14
973 1576 3.840991 AGACTGCATTGGATAATGGCAT 58.159 40.909 0.00 0.00 43.12 4.40
974 1577 3.301794 AGACTGCATTGGATAATGGCA 57.698 42.857 0.00 0.00 43.12 4.92
975 1578 4.823989 AGTAAGACTGCATTGGATAATGGC 59.176 41.667 0.00 0.00 43.12 4.40
976 1579 6.057533 TGAGTAAGACTGCATTGGATAATGG 58.942 40.000 0.00 0.00 43.12 3.16
977 1580 6.988580 TCTGAGTAAGACTGCATTGGATAATG 59.011 38.462 0.00 0.00 45.17 1.90
1021 1624 7.118971 TGTTGCTTCTGTTTGTTTGCTTTATTT 59.881 29.630 0.00 0.00 0.00 1.40
1022 1625 6.593382 TGTTGCTTCTGTTTGTTTGCTTTATT 59.407 30.769 0.00 0.00 0.00 1.40
1023 1626 6.035975 GTGTTGCTTCTGTTTGTTTGCTTTAT 59.964 34.615 0.00 0.00 0.00 1.40
1024 1627 5.347364 GTGTTGCTTCTGTTTGTTTGCTTTA 59.653 36.000 0.00 0.00 0.00 1.85
1025 1628 4.152223 GTGTTGCTTCTGTTTGTTTGCTTT 59.848 37.500 0.00 0.00 0.00 3.51
1026 1629 3.679502 GTGTTGCTTCTGTTTGTTTGCTT 59.320 39.130 0.00 0.00 0.00 3.91
1027 1630 3.253230 GTGTTGCTTCTGTTTGTTTGCT 58.747 40.909 0.00 0.00 0.00 3.91
1028 1631 2.992543 TGTGTTGCTTCTGTTTGTTTGC 59.007 40.909 0.00 0.00 0.00 3.68
1029 1632 4.090354 CACTGTGTTGCTTCTGTTTGTTTG 59.910 41.667 0.00 0.00 0.00 2.93
1030 1633 4.236935 CACTGTGTTGCTTCTGTTTGTTT 58.763 39.130 0.00 0.00 0.00 2.83
1031 1634 3.367292 CCACTGTGTTGCTTCTGTTTGTT 60.367 43.478 7.08 0.00 0.00 2.83
1032 1635 2.164219 CCACTGTGTTGCTTCTGTTTGT 59.836 45.455 7.08 0.00 0.00 2.83
1033 1636 2.801063 CCACTGTGTTGCTTCTGTTTG 58.199 47.619 7.08 0.00 0.00 2.93
1034 1637 1.134946 GCCACTGTGTTGCTTCTGTTT 59.865 47.619 7.08 0.00 0.00 2.83
1035 1638 0.740737 GCCACTGTGTTGCTTCTGTT 59.259 50.000 7.08 0.00 0.00 3.16
1036 1639 1.439353 CGCCACTGTGTTGCTTCTGT 61.439 55.000 7.08 0.00 0.00 3.41
1037 1640 1.280746 CGCCACTGTGTTGCTTCTG 59.719 57.895 7.08 0.00 0.00 3.02
1038 1641 0.748005 AACGCCACTGTGTTGCTTCT 60.748 50.000 7.08 0.00 43.33 2.85
1039 1642 0.941542 TAACGCCACTGTGTTGCTTC 59.058 50.000 7.08 0.00 44.58 3.86
1199 1808 2.544745 GGCTTTGGGGTAGTGGGGT 61.545 63.158 0.00 0.00 0.00 4.95
1201 1810 2.045340 CGGCTTTGGGGTAGTGGG 60.045 66.667 0.00 0.00 0.00 4.61
1441 2050 1.280998 TCGGATTCTTCTTCCCCCAAC 59.719 52.381 0.00 0.00 0.00 3.77
1570 2203 0.665835 CCTCCTCATCCTCTTCGTCG 59.334 60.000 0.00 0.00 0.00 5.12
1594 2227 4.131088 GTCTCTCCGCCACCGTCC 62.131 72.222 0.00 0.00 0.00 4.79
1595 2228 4.477975 CGTCTCTCCGCCACCGTC 62.478 72.222 0.00 0.00 0.00 4.79
1676 2309 1.275666 TTGCTCCATTTCTCCTCCGA 58.724 50.000 0.00 0.00 0.00 4.55
1677 2310 2.012673 CTTTGCTCCATTTCTCCTCCG 58.987 52.381 0.00 0.00 0.00 4.63
2116 2749 1.544724 GCAGCAAATCCACCTTGGTA 58.455 50.000 0.00 0.00 39.03 3.25
2254 2887 6.037786 TCCTTGACGTATGAGATCAAGTTT 57.962 37.500 11.19 0.00 45.17 2.66
2323 2956 1.083806 TCAGCGTAGATTTGCCAGCG 61.084 55.000 0.00 0.00 0.00 5.18
2368 3001 6.525121 TCTGTCAGTCTTGTGATTTTAACG 57.475 37.500 0.00 0.00 0.00 3.18
2467 3100 0.107508 GATGCAGCAAGCCAGGAGTA 60.108 55.000 0.00 0.00 44.83 2.59
2533 3166 3.870299 GCCGAAGTTCCTTCCTGATTTCT 60.870 47.826 0.00 0.00 37.20 2.52
2645 3278 4.932268 TGTATTTAGCGGTTACTGCAAC 57.068 40.909 18.97 8.45 36.32 4.17
2649 3282 5.874831 TGCATTTGTATTTAGCGGTTACTG 58.125 37.500 0.00 0.00 0.00 2.74
2654 3287 6.693315 AGTTATGCATTTGTATTTAGCGGT 57.307 33.333 3.54 0.00 0.00 5.68
2750 3383 5.529430 ACGTATCTCTAGGTGAAGACTGATG 59.471 44.000 0.00 0.00 0.00 3.07
2752 3385 4.876679 CACGTATCTCTAGGTGAAGACTGA 59.123 45.833 0.00 0.00 43.30 3.41
2793 3426 5.957842 TTTTACAATGCTACCAAGTCCAG 57.042 39.130 0.00 0.00 0.00 3.86
2794 3427 7.120579 CAGTATTTTACAATGCTACCAAGTCCA 59.879 37.037 0.00 0.00 33.86 4.02
2795 3428 7.335924 TCAGTATTTTACAATGCTACCAAGTCC 59.664 37.037 0.00 0.00 33.86 3.85
2796 3429 8.175716 GTCAGTATTTTACAATGCTACCAAGTC 58.824 37.037 0.00 0.00 33.86 3.01
2797 3430 7.148474 CGTCAGTATTTTACAATGCTACCAAGT 60.148 37.037 0.00 0.00 33.86 3.16
2798 3431 7.064134 TCGTCAGTATTTTACAATGCTACCAAG 59.936 37.037 0.00 0.00 33.86 3.61
2843 3476 5.347635 CGAAGTCCATTTCAACTACGAATGA 59.652 40.000 0.00 0.00 33.67 2.57
2844 3477 5.445939 CCGAAGTCCATTTCAACTACGAATG 60.446 44.000 0.00 0.00 0.00 2.67
2845 3478 4.630069 CCGAAGTCCATTTCAACTACGAAT 59.370 41.667 0.00 0.00 0.00 3.34
2847 3480 3.006110 ACCGAAGTCCATTTCAACTACGA 59.994 43.478 0.00 0.00 0.00 3.43
2848 3481 3.323243 ACCGAAGTCCATTTCAACTACG 58.677 45.455 0.00 0.00 0.00 3.51
2849 3482 6.426025 AGTTTACCGAAGTCCATTTCAACTAC 59.574 38.462 0.00 0.00 0.00 2.73
2850 3483 6.527423 AGTTTACCGAAGTCCATTTCAACTA 58.473 36.000 0.00 0.00 0.00 2.24
2950 3587 2.808906 AACTAGGAATGCAGGGGTTC 57.191 50.000 0.00 0.00 0.00 3.62
2987 3624 5.683876 AGTGTATTCAGTGCATAAGGTCT 57.316 39.130 0.00 0.00 0.00 3.85
2996 3633 3.815401 AGTTGACCAAGTGTATTCAGTGC 59.185 43.478 0.00 0.00 0.00 4.40
3013 3650 9.231297 CTTAACATTTCAAGGGATTAGAGTTGA 57.769 33.333 0.00 0.00 0.00 3.18
3033 3670 4.396790 GGGGTGCGATTAAATCACTTAACA 59.603 41.667 0.00 0.00 32.26 2.41
3049 3686 1.899437 TAAGGAGCTTCAGGGGTGCG 61.899 60.000 0.00 0.00 0.00 5.34
3183 3821 1.336424 GCTTCTAGTAGATCCAGGCGC 60.336 57.143 0.00 0.00 0.00 6.53
3193 3831 4.947388 AGTCTGGACTGAAGCTTCTAGTAG 59.053 45.833 26.09 19.54 40.75 2.57
3210 3848 6.986817 CCCAAACAGTTACATAGATAGTCTGG 59.013 42.308 0.00 0.00 0.00 3.86
3213 3851 6.346096 TGCCCAAACAGTTACATAGATAGTC 58.654 40.000 0.00 0.00 0.00 2.59
3252 3890 7.655490 CATTTTCAGTCTTTCCAAGATGAAGT 58.345 34.615 9.38 4.16 40.18 3.01
3291 3929 1.816835 CTGATGCCAACATGCTTGTCT 59.183 47.619 5.61 0.00 36.35 3.41
3510 4293 3.009033 ACCTGAACAAACCTATGCTGCTA 59.991 43.478 0.00 0.00 0.00 3.49
3511 4294 2.224867 ACCTGAACAAACCTATGCTGCT 60.225 45.455 0.00 0.00 0.00 4.24
3512 4295 2.095059 CACCTGAACAAACCTATGCTGC 60.095 50.000 0.00 0.00 0.00 5.25
3513 4296 3.149196 ACACCTGAACAAACCTATGCTG 58.851 45.455 0.00 0.00 0.00 4.41
3514 4297 3.508845 ACACCTGAACAAACCTATGCT 57.491 42.857 0.00 0.00 0.00 3.79
3515 4298 4.298332 CAAACACCTGAACAAACCTATGC 58.702 43.478 0.00 0.00 0.00 3.14
3516 4299 4.298332 GCAAACACCTGAACAAACCTATG 58.702 43.478 0.00 0.00 0.00 2.23
3517 4300 3.320826 GGCAAACACCTGAACAAACCTAT 59.679 43.478 0.00 0.00 0.00 2.57
3590 4374 6.948886 TGTATAATAGGAGTTCAGCCTCTAGG 59.051 42.308 0.00 0.00 36.96 3.02
3753 4537 6.759272 TGGATGATAAACTCCAGCTACATAC 58.241 40.000 0.00 0.00 36.63 2.39
3917 4705 3.625897 CAGCTGACCCCGGACACA 61.626 66.667 8.42 0.00 0.00 3.72
3949 4737 3.822192 CGGAGACCGCGATGTCCA 61.822 66.667 18.09 0.00 41.17 4.02
4070 4858 4.921834 CTCTCGAGGAACTTGGCC 57.078 61.111 13.56 0.00 41.55 5.36
4140 4928 6.511444 GCATTCAATCTCTCATTCTTCTTCCG 60.511 42.308 0.00 0.00 0.00 4.30
4151 4939 3.349927 CTGTTGGGCATTCAATCTCTCA 58.650 45.455 0.00 0.00 0.00 3.27
4184 4972 0.109412 AAAGGTCGTCGTCATCGTCC 60.109 55.000 0.00 0.00 38.33 4.79
4263 5061 7.988599 ACTCACTCCTAGTGTATCTACTAACAG 59.011 40.741 6.93 0.00 46.03 3.16
4270 5068 5.666265 TCCTCACTCACTCCTAGTGTATCTA 59.334 44.000 6.93 0.00 46.03 1.98
4271 5069 4.475381 TCCTCACTCACTCCTAGTGTATCT 59.525 45.833 6.93 0.00 46.03 1.98
4272 5070 4.783055 TCCTCACTCACTCCTAGTGTATC 58.217 47.826 6.93 0.00 46.03 2.24
4273 5071 4.864483 TCCTCACTCACTCCTAGTGTAT 57.136 45.455 6.93 0.00 46.03 2.29
4274 5072 4.652679 TTCCTCACTCACTCCTAGTGTA 57.347 45.455 6.93 0.00 46.03 2.90
4275 5073 3.527507 TTCCTCACTCACTCCTAGTGT 57.472 47.619 6.93 0.00 46.03 3.55
4277 5075 4.079443 AGCTATTCCTCACTCACTCCTAGT 60.079 45.833 0.00 0.00 0.00 2.57
4278 5076 4.278170 CAGCTATTCCTCACTCACTCCTAG 59.722 50.000 0.00 0.00 0.00 3.02
4322 5120 4.646492 ACAATGGAATATGAGTCCTTTGCC 59.354 41.667 16.79 0.00 46.64 4.52
4328 5126 4.514441 CAGCTCACAATGGAATATGAGTCC 59.486 45.833 0.00 0.00 40.61 3.85
4330 5128 4.880120 CACAGCTCACAATGGAATATGAGT 59.120 41.667 0.00 0.00 40.61 3.41
4336 5134 3.959293 TCATCACAGCTCACAATGGAAT 58.041 40.909 0.00 0.00 0.00 3.01
4447 5258 3.493002 CCAACGACCCAACTGTACTTGTA 60.493 47.826 0.00 0.00 0.00 2.41
4448 5259 2.557317 CAACGACCCAACTGTACTTGT 58.443 47.619 0.00 0.00 0.00 3.16
4449 5260 1.871039 CCAACGACCCAACTGTACTTG 59.129 52.381 0.00 0.00 0.00 3.16
4450 5261 1.487558 ACCAACGACCCAACTGTACTT 59.512 47.619 0.00 0.00 0.00 2.24
4494 5307 1.358830 AAGGAGGATGAGGCCATGGG 61.359 60.000 15.13 0.00 32.09 4.00
4510 5326 4.094887 CCTGTCATGTGTCCGAATAAAAGG 59.905 45.833 0.00 0.00 0.00 3.11
4511 5327 4.935205 TCCTGTCATGTGTCCGAATAAAAG 59.065 41.667 0.00 0.00 0.00 2.27
4512 5328 4.900684 TCCTGTCATGTGTCCGAATAAAA 58.099 39.130 0.00 0.00 0.00 1.52
4513 5329 4.545208 TCCTGTCATGTGTCCGAATAAA 57.455 40.909 0.00 0.00 0.00 1.40
4514 5330 4.081142 ACATCCTGTCATGTGTCCGAATAA 60.081 41.667 0.00 0.00 35.57 1.40
4515 5331 3.450817 ACATCCTGTCATGTGTCCGAATA 59.549 43.478 0.00 0.00 35.57 1.75
4516 5332 2.237143 ACATCCTGTCATGTGTCCGAAT 59.763 45.455 0.00 0.00 35.57 3.34
4517 5333 1.623311 ACATCCTGTCATGTGTCCGAA 59.377 47.619 0.00 0.00 35.57 4.30
4518 5334 1.066929 CACATCCTGTCATGTGTCCGA 60.067 52.381 5.56 0.00 45.93 4.55
4519 5335 1.362768 CACATCCTGTCATGTGTCCG 58.637 55.000 5.56 0.00 45.93 4.79
4524 5340 1.202915 TGTTGGCACATCCTGTCATGT 60.203 47.619 0.00 0.00 39.30 3.21
4525 5341 1.471287 CTGTTGGCACATCCTGTCATG 59.529 52.381 0.00 0.00 39.30 3.07
4526 5342 1.074405 ACTGTTGGCACATCCTGTCAT 59.926 47.619 0.00 0.00 39.30 3.06
4527 5343 0.473755 ACTGTTGGCACATCCTGTCA 59.526 50.000 0.00 0.00 39.30 3.58
4528 5344 2.472695 TACTGTTGGCACATCCTGTC 57.527 50.000 0.00 0.00 39.30 3.51
4529 5345 3.439857 AATACTGTTGGCACATCCTGT 57.560 42.857 0.00 0.00 39.30 4.00
4530 5346 4.218200 TGAAAATACTGTTGGCACATCCTG 59.782 41.667 0.00 0.00 39.30 3.86
4531 5347 4.406456 TGAAAATACTGTTGGCACATCCT 58.594 39.130 0.00 0.00 39.30 3.24
4532 5348 4.218417 ACTGAAAATACTGTTGGCACATCC 59.782 41.667 0.00 0.00 39.30 3.51
4540 5356 5.991606 TGACTCCTGACTGAAAATACTGTTG 59.008 40.000 0.00 0.00 0.00 3.33
4548 5364 3.134623 TGCTTCTGACTCCTGACTGAAAA 59.865 43.478 0.00 0.00 0.00 2.29
4564 5380 5.008415 CAGTTGAAACAGAATCAGTGCTTCT 59.992 40.000 3.35 3.35 33.25 2.85
4565 5381 5.210715 CAGTTGAAACAGAATCAGTGCTTC 58.789 41.667 0.00 0.00 0.00 3.86
4566 5382 4.641989 ACAGTTGAAACAGAATCAGTGCTT 59.358 37.500 0.00 0.00 0.00 3.91
4567 5383 4.202441 ACAGTTGAAACAGAATCAGTGCT 58.798 39.130 0.00 0.00 0.00 4.40
4568 5384 4.558538 ACAGTTGAAACAGAATCAGTGC 57.441 40.909 0.00 0.00 0.00 4.40
4569 5385 4.736793 GCAACAGTTGAAACAGAATCAGTG 59.263 41.667 17.99 0.00 0.00 3.66
4747 5575 1.426215 TGGGCATCATATCCTGCATGT 59.574 47.619 8.00 0.00 40.18 3.21
4813 5641 3.003585 TGTGTTCACTGTGCTGCTTTATG 59.996 43.478 2.12 0.00 0.00 1.90
4887 5720 1.734163 ACGGGTTTTAGGATTGAGCG 58.266 50.000 0.00 0.00 0.00 5.03
4932 5765 4.464069 CAAACCTTTGTTTTCTGGTCCA 57.536 40.909 0.00 0.00 41.92 4.02
4945 5778 1.142667 CCATTGCCCCAACAAACCTTT 59.857 47.619 0.00 0.00 32.27 3.11
4955 5788 2.282816 CCGTTGTCCATTGCCCCA 60.283 61.111 0.00 0.00 0.00 4.96
4961 5794 1.002624 ATCACCGCCGTTGTCCATT 60.003 52.632 0.00 0.00 0.00 3.16
4963 5796 2.358125 CATCACCGCCGTTGTCCA 60.358 61.111 0.00 0.00 0.00 4.02
5043 5885 0.460635 ATAAACATACGCGCCGTGGT 60.461 50.000 5.73 0.00 41.39 4.16
5059 5901 1.597690 CCCGACGTTACATCGCGATAA 60.598 52.381 23.22 11.01 38.27 1.75
5174 6017 5.180271 AGGCAATATGGCAAATTTCACTTG 58.820 37.500 4.05 0.00 46.46 3.16
5183 6026 2.435069 CAATGGGAGGCAATATGGCAAA 59.565 45.455 4.05 0.00 46.46 3.68
5236 6139 1.076014 GTGTACTTTGGGGGTGGGG 59.924 63.158 0.00 0.00 0.00 4.96
5278 6182 9.726438 CTCTCTTTCTAAAGATCAAAACCCTAA 57.274 33.333 5.65 0.00 43.52 2.69
5282 6186 8.097662 TCCTCTCTCTTTCTAAAGATCAAAACC 58.902 37.037 5.65 0.00 43.52 3.27
5296 6200 7.412853 AAGTACCTACATTCCTCTCTCTTTC 57.587 40.000 0.00 0.00 0.00 2.62
5389 6293 0.637195 TTCCTTTGGGTTGGGTTGGA 59.363 50.000 0.00 0.00 0.00 3.53
5390 6294 1.501582 TTTCCTTTGGGTTGGGTTGG 58.498 50.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.