Multiple sequence alignment - TraesCS5D01G003600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G003600 chr5D 100.000 3359 0 0 1 3359 3550199 3546841 0.000000e+00 6204.0
1 TraesCS5D01G003600 chr5D 85.714 231 15 7 3141 3359 545721923 545722147 9.380000e-56 228.0
2 TraesCS5D01G003600 chr5D 88.268 179 15 5 2730 2905 3568269 3568094 3.400000e-50 209.0
3 TraesCS5D01G003600 chr5D 80.583 206 25 6 3141 3334 484704032 484703830 9.710000e-31 145.0
4 TraesCS5D01G003600 chr5B 92.695 1848 90 26 693 2509 4830834 4832667 0.000000e+00 2623.0
5 TraesCS5D01G003600 chr5B 87.027 185 16 6 2730 2908 5055111 5054929 5.680000e-48 202.0
6 TraesCS5D01G003600 chr5B 87.342 158 9 7 2996 3144 4832746 4832901 1.600000e-38 171.0
7 TraesCS5D01G003600 chr5B 80.543 221 24 8 3152 3358 596516213 596516428 5.800000e-33 152.0
8 TraesCS5D01G003600 chr5A 91.230 1927 82 44 605 2505 2399494 2397629 0.000000e+00 2542.0
9 TraesCS5D01G003600 chr5A 87.745 408 30 9 1 408 2399911 2399524 3.050000e-125 459.0
10 TraesCS5D01G003600 chr5A 91.321 265 19 1 2673 2933 2389689 2389425 3.190000e-95 359.0
11 TraesCS5D01G003600 chr5A 92.481 133 7 2 2502 2634 2389816 2389687 1.590000e-43 187.0
12 TraesCS5D01G003600 chr5A 88.961 154 12 3 2730 2883 2411673 2411525 5.720000e-43 185.0
13 TraesCS5D01G003600 chr5A 92.248 129 6 4 3139 3265 608258730 608258604 2.660000e-41 180.0
14 TraesCS5D01G003600 chr5A 87.662 154 8 6 2995 3139 2389328 2389177 5.760000e-38 169.0
15 TraesCS5D01G003600 chr5A 93.182 88 2 2 2412 2499 2389946 2389863 3.520000e-25 126.0
16 TraesCS5D01G003600 chr5A 100.000 36 0 0 2524 2559 2397633 2397598 2.160000e-07 67.6
17 TraesCS5D01G003600 chr1A 84.000 325 31 15 99 413 566002852 566002539 3.280000e-75 292.0
18 TraesCS5D01G003600 chr1A 95.745 47 1 1 2628 2674 54602439 54602394 1.290000e-09 75.0
19 TraesCS5D01G003600 chr1B 85.375 253 24 9 170 413 655774310 655774062 2.000000e-62 250.0
20 TraesCS5D01G003600 chr1B 88.325 197 10 4 3145 3329 525798241 525798046 1.210000e-54 224.0
21 TraesCS5D01G003600 chr1B 92.593 54 2 2 2628 2679 421421370 421421317 3.590000e-10 76.8
22 TraesCS5D01G003600 chr1B 93.750 48 1 2 2628 2674 26636595 26636641 1.670000e-08 71.3
23 TraesCS5D01G003600 chr6B 90.104 192 5 5 3145 3323 664584441 664584631 1.560000e-58 237.0
24 TraesCS5D01G003600 chr2A 89.175 194 8 4 3142 3323 4357299 4357491 2.610000e-56 230.0
25 TraesCS5D01G003600 chr2A 97.778 45 0 1 2631 2674 16862859 16862903 3.590000e-10 76.8
26 TraesCS5D01G003600 chrUn 88.384 198 10 4 3144 3329 9716677 9716481 3.370000e-55 226.0
27 TraesCS5D01G003600 chrUn 87.437 199 11 5 3143 3329 101750566 101750370 2.030000e-52 217.0
28 TraesCS5D01G003600 chrUn 95.833 48 1 1 2629 2675 24886466 24886419 3.590000e-10 76.8
29 TraesCS5D01G003600 chr1D 85.778 225 19 9 198 413 471602264 471602044 3.370000e-55 226.0
30 TraesCS5D01G003600 chr1D 92.800 125 6 3 3143 3265 487261478 487261355 9.580000e-41 178.0
31 TraesCS5D01G003600 chr4B 86.957 207 13 7 3135 3329 37434896 37434692 1.570000e-53 220.0
32 TraesCS5D01G003600 chr7D 89.011 182 7 7 3145 3314 582031643 582031463 2.630000e-51 213.0
33 TraesCS5D01G003600 chr7D 84.058 207 13 12 3138 3329 121924270 121924069 7.400000e-42 182.0
34 TraesCS5D01G003600 chr7D 95.556 45 2 0 2633 2677 444375727 444375771 4.650000e-09 73.1
35 TraesCS5D01G003600 chr3D 87.113 194 10 6 3142 3323 520459007 520459197 4.390000e-49 206.0
36 TraesCS5D01G003600 chr3D 86.932 176 20 1 185 360 477910499 477910327 9.510000e-46 195.0
37 TraesCS5D01G003600 chr3D 95.652 46 1 1 2630 2674 391635552 391635507 4.650000e-09 73.1
38 TraesCS5D01G003600 chr3D 93.750 48 2 1 2629 2675 55092779 55092826 1.670000e-08 71.3
39 TraesCS5D01G003600 chr3B 82.353 238 29 5 185 413 637092837 637092604 9.510000e-46 195.0
40 TraesCS5D01G003600 chr3A 82.353 238 29 5 185 413 621328090 621327857 9.510000e-46 195.0
41 TraesCS5D01G003600 chr3A 79.310 203 28 8 515 717 621327072 621326884 2.720000e-26 130.0
42 TraesCS5D01G003600 chr6D 82.791 215 21 7 3115 3314 55766108 55766321 9.580000e-41 178.0
43 TraesCS5D01G003600 chr7B 87.500 64 3 5 2628 2688 684939915 684939976 6.010000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G003600 chr5D 3546841 3550199 3358 True 6204.000000 6204 100.000000 1 3359 1 chr5D.!!$R1 3358
1 TraesCS5D01G003600 chr5B 4830834 4832901 2067 False 1397.000000 2623 90.018500 693 3144 2 chr5B.!!$F2 2451
2 TraesCS5D01G003600 chr5A 2397598 2399911 2313 True 1022.866667 2542 92.991667 1 2559 3 chr5A.!!$R4 2558
3 TraesCS5D01G003600 chr5A 2389177 2389946 769 True 210.250000 359 91.161500 2412 3139 4 chr5A.!!$R3 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 509 0.03563 GATCAGTGGCAGGTGAGCTT 60.036 55.0 7.59 0.0 34.17 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2407 2469 0.598065 CGCCCCAGAAACCAAAGAAG 59.402 55.0 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.984190 ATGTGCAATGTATATAATTTCATGCAA 57.016 25.926 0.00 0.00 31.80 4.08
53 54 9.813446 TGTGCAATGTATATAATTTCATGCAAA 57.187 25.926 0.00 0.00 31.80 3.68
124 125 8.947304 ATGTTTTGTTTTGTTTTTAACTGCAG 57.053 26.923 13.48 13.48 0.00 4.41
129 130 7.913674 TGTTTTGTTTTTAACTGCAGGAATT 57.086 28.000 19.93 5.95 0.00 2.17
197 198 4.040217 GGTACTTGGAGCTGATCATGATCT 59.960 45.833 30.65 15.20 38.60 2.75
219 220 3.987547 TCTATCTGCTGCAGTATCTTGC 58.012 45.455 27.24 0.00 44.33 4.01
220 221 3.640498 TCTATCTGCTGCAGTATCTTGCT 59.360 43.478 27.24 7.51 44.38 3.91
239 240 0.035725 TGTTGCTGCTCATCCTCCTG 60.036 55.000 0.00 0.00 0.00 3.86
240 241 1.077930 TTGCTGCTCATCCTCCTGC 60.078 57.895 0.00 0.00 0.00 4.85
241 242 1.844544 TTGCTGCTCATCCTCCTGCA 61.845 55.000 0.00 0.00 0.00 4.41
247 248 0.617413 CTCATCCTCCTGCAGGTTGT 59.383 55.000 31.58 13.94 43.95 3.32
297 298 3.920231 TGGCAGAGCTATCATTCAAGT 57.080 42.857 0.00 0.00 0.00 3.16
298 299 3.538591 TGGCAGAGCTATCATTCAAGTG 58.461 45.455 0.00 0.00 0.00 3.16
355 356 2.613595 TCATCAGCCAATGATTGCGTAC 59.386 45.455 0.00 0.00 46.97 3.67
356 357 1.006086 TCAGCCAATGATTGCGTACG 58.994 50.000 11.84 11.84 31.12 3.67
414 415 5.814783 GGAATGATTCCGTTGAGAATTCTG 58.185 41.667 14.00 0.00 40.59 3.02
415 416 5.220931 GGAATGATTCCGTTGAGAATTCTGG 60.221 44.000 14.00 7.98 40.59 3.86
416 417 4.286297 TGATTCCGTTGAGAATTCTGGT 57.714 40.909 14.00 0.00 36.60 4.00
418 419 1.808411 TCCGTTGAGAATTCTGGTGC 58.192 50.000 14.00 0.00 0.00 5.01
420 421 1.466167 CCGTTGAGAATTCTGGTGCAG 59.534 52.381 14.00 0.00 0.00 4.41
421 422 1.466167 CGTTGAGAATTCTGGTGCAGG 59.534 52.381 14.00 0.00 31.51 4.85
423 424 2.479566 TGAGAATTCTGGTGCAGGTC 57.520 50.000 14.00 0.00 31.51 3.85
424 425 1.338105 TGAGAATTCTGGTGCAGGTCG 60.338 52.381 14.00 0.00 31.51 4.79
425 426 0.976641 AGAATTCTGGTGCAGGTCGA 59.023 50.000 7.30 0.00 31.51 4.20
426 427 1.556911 AGAATTCTGGTGCAGGTCGAT 59.443 47.619 7.30 0.00 31.51 3.59
427 428 2.026822 AGAATTCTGGTGCAGGTCGATT 60.027 45.455 7.30 0.00 31.51 3.34
428 429 2.029838 ATTCTGGTGCAGGTCGATTC 57.970 50.000 0.00 0.00 31.51 2.52
429 430 0.684535 TTCTGGTGCAGGTCGATTCA 59.315 50.000 0.00 0.00 31.51 2.57
430 431 0.037326 TCTGGTGCAGGTCGATTCAC 60.037 55.000 0.00 0.00 31.51 3.18
431 432 0.320683 CTGGTGCAGGTCGATTCACA 60.321 55.000 0.00 0.00 0.00 3.58
432 433 0.320683 TGGTGCAGGTCGATTCACAG 60.321 55.000 0.00 0.00 0.00 3.66
433 434 0.037326 GGTGCAGGTCGATTCACAGA 60.037 55.000 0.00 0.00 0.00 3.41
434 435 1.406069 GGTGCAGGTCGATTCACAGAT 60.406 52.381 0.00 0.00 0.00 2.90
437 438 3.553511 GTGCAGGTCGATTCACAGATTAG 59.446 47.826 0.00 0.00 0.00 1.73
438 439 3.126831 GCAGGTCGATTCACAGATTAGG 58.873 50.000 0.00 0.00 0.00 2.69
439 440 3.722147 CAGGTCGATTCACAGATTAGGG 58.278 50.000 0.00 0.00 0.00 3.53
440 441 3.384789 CAGGTCGATTCACAGATTAGGGA 59.615 47.826 0.00 0.00 0.00 4.20
441 442 4.030913 AGGTCGATTCACAGATTAGGGAA 58.969 43.478 0.00 0.00 0.00 3.97
442 443 4.469945 AGGTCGATTCACAGATTAGGGAAA 59.530 41.667 0.00 0.00 0.00 3.13
443 444 4.571176 GGTCGATTCACAGATTAGGGAAAC 59.429 45.833 0.00 0.00 0.00 2.78
458 459 2.876581 GGAAACCATTTCACCCTCTGT 58.123 47.619 3.87 0.00 41.43 3.41
459 460 3.230976 GGAAACCATTTCACCCTCTGTT 58.769 45.455 3.87 0.00 41.43 3.16
460 461 3.005791 GGAAACCATTTCACCCTCTGTTG 59.994 47.826 3.87 0.00 41.43 3.33
461 462 3.593442 AACCATTTCACCCTCTGTTGA 57.407 42.857 0.00 0.00 0.00 3.18
462 463 3.146104 ACCATTTCACCCTCTGTTGAG 57.854 47.619 0.00 0.00 39.92 3.02
463 464 2.711009 ACCATTTCACCCTCTGTTGAGA 59.289 45.455 0.00 0.00 42.73 3.27
464 465 3.138283 ACCATTTCACCCTCTGTTGAGAA 59.862 43.478 0.00 0.00 42.73 2.87
465 466 4.144297 CCATTTCACCCTCTGTTGAGAAA 58.856 43.478 0.00 0.00 42.73 2.52
466 467 4.217118 CCATTTCACCCTCTGTTGAGAAAG 59.783 45.833 0.00 0.00 42.73 2.62
467 468 4.771114 TTTCACCCTCTGTTGAGAAAGA 57.229 40.909 0.00 0.00 42.73 2.52
468 469 4.771114 TTCACCCTCTGTTGAGAAAGAA 57.229 40.909 0.00 0.00 42.73 2.52
469 470 4.073293 TCACCCTCTGTTGAGAAAGAAC 57.927 45.455 0.00 0.00 42.73 3.01
470 471 3.711704 TCACCCTCTGTTGAGAAAGAACT 59.288 43.478 0.00 0.00 42.73 3.01
471 472 3.812053 CACCCTCTGTTGAGAAAGAACTG 59.188 47.826 0.00 0.00 42.73 3.16
472 473 3.456277 ACCCTCTGTTGAGAAAGAACTGT 59.544 43.478 0.00 0.00 42.73 3.55
473 474 4.080299 ACCCTCTGTTGAGAAAGAACTGTT 60.080 41.667 0.00 0.00 42.73 3.16
474 475 4.884164 CCCTCTGTTGAGAAAGAACTGTTT 59.116 41.667 0.00 0.00 42.73 2.83
475 476 5.220931 CCCTCTGTTGAGAAAGAACTGTTTG 60.221 44.000 0.00 0.00 42.73 2.93
476 477 5.235305 TCTGTTGAGAAAGAACTGTTTGC 57.765 39.130 0.00 0.00 0.00 3.68
477 478 4.096382 TCTGTTGAGAAAGAACTGTTTGCC 59.904 41.667 0.00 0.00 0.00 4.52
478 479 3.130340 TGTTGAGAAAGAACTGTTTGCCC 59.870 43.478 0.00 0.00 0.00 5.36
479 480 3.297134 TGAGAAAGAACTGTTTGCCCT 57.703 42.857 0.00 0.00 0.00 5.19
480 481 4.431416 TGAGAAAGAACTGTTTGCCCTA 57.569 40.909 0.00 0.00 0.00 3.53
481 482 4.985538 TGAGAAAGAACTGTTTGCCCTAT 58.014 39.130 0.00 0.00 0.00 2.57
482 483 6.121776 TGAGAAAGAACTGTTTGCCCTATA 57.878 37.500 0.00 0.00 0.00 1.31
483 484 6.539173 TGAGAAAGAACTGTTTGCCCTATAA 58.461 36.000 0.00 0.00 0.00 0.98
484 485 6.430000 TGAGAAAGAACTGTTTGCCCTATAAC 59.570 38.462 0.00 0.00 0.00 1.89
485 486 6.543735 AGAAAGAACTGTTTGCCCTATAACT 58.456 36.000 0.00 0.00 0.00 2.24
486 487 7.004691 AGAAAGAACTGTTTGCCCTATAACTT 58.995 34.615 0.00 0.00 0.00 2.66
487 488 6.575162 AAGAACTGTTTGCCCTATAACTTG 57.425 37.500 0.00 0.00 0.00 3.16
488 489 5.010282 AGAACTGTTTGCCCTATAACTTGG 58.990 41.667 0.00 0.00 0.00 3.61
489 490 3.697166 ACTGTTTGCCCTATAACTTGGG 58.303 45.455 0.00 0.00 46.00 4.12
490 491 3.332485 ACTGTTTGCCCTATAACTTGGGA 59.668 43.478 1.75 0.00 46.15 4.37
491 492 4.017499 ACTGTTTGCCCTATAACTTGGGAT 60.017 41.667 1.75 0.00 46.15 3.85
492 493 4.532834 TGTTTGCCCTATAACTTGGGATC 58.467 43.478 1.75 0.00 46.15 3.36
493 494 4.017958 TGTTTGCCCTATAACTTGGGATCA 60.018 41.667 1.75 0.00 46.15 2.92
494 495 4.437682 TTGCCCTATAACTTGGGATCAG 57.562 45.455 1.75 0.00 46.15 2.90
495 496 3.393687 TGCCCTATAACTTGGGATCAGT 58.606 45.455 1.75 0.00 46.15 3.41
496 497 3.136443 TGCCCTATAACTTGGGATCAGTG 59.864 47.826 1.75 0.00 46.15 3.66
497 498 3.496870 GCCCTATAACTTGGGATCAGTGG 60.497 52.174 1.75 0.00 46.15 4.00
498 499 3.496870 CCCTATAACTTGGGATCAGTGGC 60.497 52.174 0.00 0.00 46.15 5.01
499 500 3.136443 CCTATAACTTGGGATCAGTGGCA 59.864 47.826 0.00 0.00 0.00 4.92
500 501 2.787473 TAACTTGGGATCAGTGGCAG 57.213 50.000 0.00 0.00 0.00 4.85
501 502 0.038744 AACTTGGGATCAGTGGCAGG 59.961 55.000 0.00 0.00 0.00 4.85
502 503 1.136329 ACTTGGGATCAGTGGCAGGT 61.136 55.000 0.00 0.00 0.00 4.00
503 504 0.679002 CTTGGGATCAGTGGCAGGTG 60.679 60.000 0.00 0.00 0.00 4.00
504 505 1.133181 TTGGGATCAGTGGCAGGTGA 61.133 55.000 2.15 2.15 0.00 4.02
505 506 1.222936 GGGATCAGTGGCAGGTGAG 59.777 63.158 5.76 0.00 0.00 3.51
506 507 1.451028 GGATCAGTGGCAGGTGAGC 60.451 63.158 6.51 6.51 0.00 4.26
507 508 1.601171 GATCAGTGGCAGGTGAGCT 59.399 57.895 7.59 0.00 34.17 4.09
508 509 0.035630 GATCAGTGGCAGGTGAGCTT 60.036 55.000 7.59 0.00 34.17 3.74
509 510 0.035630 ATCAGTGGCAGGTGAGCTTC 60.036 55.000 5.76 0.00 34.17 3.86
510 511 2.031516 CAGTGGCAGGTGAGCTTCG 61.032 63.158 0.00 0.00 34.17 3.79
511 512 2.210013 AGTGGCAGGTGAGCTTCGA 61.210 57.895 0.00 0.00 34.17 3.71
512 513 1.078848 GTGGCAGGTGAGCTTCGAT 60.079 57.895 0.00 0.00 34.17 3.59
513 514 1.086634 GTGGCAGGTGAGCTTCGATC 61.087 60.000 0.00 0.00 34.17 3.69
514 515 1.219124 GGCAGGTGAGCTTCGATCA 59.781 57.895 0.00 0.00 34.17 2.92
515 516 0.809241 GGCAGGTGAGCTTCGATCAG 60.809 60.000 0.00 0.00 34.17 2.90
516 517 0.174389 GCAGGTGAGCTTCGATCAGA 59.826 55.000 0.00 0.00 0.00 3.27
517 518 1.202510 GCAGGTGAGCTTCGATCAGAT 60.203 52.381 0.00 0.00 0.00 2.90
518 519 2.471818 CAGGTGAGCTTCGATCAGATG 58.528 52.381 0.00 0.00 0.00 2.90
519 520 2.106566 AGGTGAGCTTCGATCAGATGT 58.893 47.619 0.00 0.00 0.00 3.06
520 521 2.159128 AGGTGAGCTTCGATCAGATGTG 60.159 50.000 0.00 0.00 0.00 3.21
521 522 2.159184 GGTGAGCTTCGATCAGATGTGA 60.159 50.000 0.00 0.00 37.02 3.58
522 523 3.492309 GGTGAGCTTCGATCAGATGTGAT 60.492 47.826 4.78 4.78 46.75 3.06
523 524 3.490155 GTGAGCTTCGATCAGATGTGATG 59.510 47.826 10.56 3.30 43.92 3.07
524 525 3.058450 GAGCTTCGATCAGATGTGATGG 58.942 50.000 10.56 9.34 43.92 3.51
525 526 1.530293 GCTTCGATCAGATGTGATGGC 59.470 52.381 10.56 5.65 43.92 4.40
526 527 2.830104 CTTCGATCAGATGTGATGGCA 58.170 47.619 10.56 0.00 43.92 4.92
527 528 2.985957 TCGATCAGATGTGATGGCAA 57.014 45.000 10.56 0.00 43.92 4.52
528 529 3.480505 TCGATCAGATGTGATGGCAAT 57.519 42.857 10.56 0.00 43.92 3.56
529 530 3.135994 TCGATCAGATGTGATGGCAATG 58.864 45.455 10.56 0.00 43.92 2.82
530 531 2.876550 CGATCAGATGTGATGGCAATGT 59.123 45.455 10.56 0.00 43.92 2.71
531 532 3.303791 CGATCAGATGTGATGGCAATGTG 60.304 47.826 10.56 0.00 43.92 3.21
532 533 1.746787 TCAGATGTGATGGCAATGTGC 59.253 47.619 0.00 0.00 44.08 4.57
533 534 4.189452 ATCAGATGTGATGGCAATGTGCA 61.189 43.478 4.23 0.00 42.19 4.57
534 535 6.229214 ATCAGATGTGATGGCAATGTGCAC 62.229 45.833 10.75 10.75 42.19 4.57
538 539 5.711877 ATGTGATGGCAATGTGCACACAC 62.712 47.826 24.37 22.39 46.50 3.82
550 551 4.996434 ACACACGCCCAGCTGCTC 62.996 66.667 8.66 0.30 0.00 4.26
551 552 4.694233 CACACGCCCAGCTGCTCT 62.694 66.667 8.66 0.00 0.00 4.09
552 553 2.997315 ACACGCCCAGCTGCTCTA 60.997 61.111 8.66 0.00 0.00 2.43
553 554 2.202851 CACGCCCAGCTGCTCTAG 60.203 66.667 8.66 0.00 0.00 2.43
554 555 2.363018 ACGCCCAGCTGCTCTAGA 60.363 61.111 8.66 0.00 0.00 2.43
555 556 2.416678 CGCCCAGCTGCTCTAGAG 59.583 66.667 15.85 15.85 0.00 2.43
556 557 2.820973 GCCCAGCTGCTCTAGAGG 59.179 66.667 21.23 6.76 0.00 3.69
557 558 1.760086 GCCCAGCTGCTCTAGAGGA 60.760 63.158 21.23 17.63 0.00 3.71
558 559 1.120795 GCCCAGCTGCTCTAGAGGAT 61.121 60.000 21.23 1.44 0.00 3.24
559 560 1.422531 CCCAGCTGCTCTAGAGGATT 58.577 55.000 21.23 7.19 0.00 3.01
560 561 1.344114 CCCAGCTGCTCTAGAGGATTC 59.656 57.143 21.23 12.69 0.00 2.52
561 562 2.318908 CCAGCTGCTCTAGAGGATTCT 58.681 52.381 21.23 14.60 37.46 2.40
562 563 2.699846 CCAGCTGCTCTAGAGGATTCTT 59.300 50.000 21.23 1.96 34.79 2.52
563 564 3.134442 CCAGCTGCTCTAGAGGATTCTTT 59.866 47.826 21.23 0.26 34.79 2.52
564 565 4.121317 CAGCTGCTCTAGAGGATTCTTTG 58.879 47.826 21.23 6.72 34.79 2.77
565 566 2.871633 GCTGCTCTAGAGGATTCTTTGC 59.128 50.000 21.23 12.78 34.79 3.68
566 567 3.432046 GCTGCTCTAGAGGATTCTTTGCT 60.432 47.826 21.23 0.00 34.79 3.91
567 568 4.121317 CTGCTCTAGAGGATTCTTTGCTG 58.879 47.826 21.23 4.81 34.79 4.41
568 569 2.871633 GCTCTAGAGGATTCTTTGCTGC 59.128 50.000 21.23 0.00 34.79 5.25
569 570 3.681034 GCTCTAGAGGATTCTTTGCTGCA 60.681 47.826 21.23 0.00 34.79 4.41
570 571 3.866651 TCTAGAGGATTCTTTGCTGCAC 58.133 45.455 0.00 0.00 34.79 4.57
571 572 1.446907 AGAGGATTCTTTGCTGCACG 58.553 50.000 0.00 0.00 0.00 5.34
572 573 0.179179 GAGGATTCTTTGCTGCACGC 60.179 55.000 0.00 1.70 39.77 5.34
573 574 5.735981 TAGAGGATTCTTTGCTGCACGCA 62.736 47.826 0.00 6.72 39.88 5.24
581 582 4.471726 GCTGCACGCAGGCACATC 62.472 66.667 20.00 0.00 43.77 3.06
582 583 3.051479 CTGCACGCAGGCACATCA 61.051 61.111 11.29 0.00 39.25 3.07
583 584 3.318539 CTGCACGCAGGCACATCAC 62.319 63.158 11.29 0.00 39.25 3.06
584 585 3.356267 GCACGCAGGCACATCACA 61.356 61.111 0.00 0.00 0.00 3.58
585 586 2.557805 CACGCAGGCACATCACAC 59.442 61.111 0.00 0.00 0.00 3.82
586 587 2.669569 ACGCAGGCACATCACACC 60.670 61.111 0.00 0.00 0.00 4.16
587 588 2.359107 CGCAGGCACATCACACCT 60.359 61.111 0.00 0.00 0.00 4.00
588 589 1.079197 CGCAGGCACATCACACCTA 60.079 57.895 0.00 0.00 30.84 3.08
589 590 0.673333 CGCAGGCACATCACACCTAA 60.673 55.000 0.00 0.00 30.84 2.69
590 591 1.533625 GCAGGCACATCACACCTAAA 58.466 50.000 0.00 0.00 30.84 1.85
591 592 2.094675 GCAGGCACATCACACCTAAAT 58.905 47.619 0.00 0.00 30.84 1.40
592 593 2.098117 GCAGGCACATCACACCTAAATC 59.902 50.000 0.00 0.00 30.84 2.17
593 594 3.346315 CAGGCACATCACACCTAAATCA 58.654 45.455 0.00 0.00 30.84 2.57
594 595 3.758023 CAGGCACATCACACCTAAATCAA 59.242 43.478 0.00 0.00 30.84 2.57
595 596 4.218200 CAGGCACATCACACCTAAATCAAA 59.782 41.667 0.00 0.00 30.84 2.69
596 597 5.018809 AGGCACATCACACCTAAATCAAAT 58.981 37.500 0.00 0.00 29.98 2.32
597 598 5.104374 GGCACATCACACCTAAATCAAATG 58.896 41.667 0.00 0.00 0.00 2.32
598 599 5.104374 GCACATCACACCTAAATCAAATGG 58.896 41.667 0.00 0.00 0.00 3.16
599 600 5.104374 CACATCACACCTAAATCAAATGGC 58.896 41.667 0.00 0.00 0.00 4.40
600 601 4.142403 ACATCACACCTAAATCAAATGGCG 60.142 41.667 0.00 0.00 0.00 5.69
601 602 3.680490 TCACACCTAAATCAAATGGCGA 58.320 40.909 0.00 0.00 0.00 5.54
602 603 3.689161 TCACACCTAAATCAAATGGCGAG 59.311 43.478 0.00 0.00 0.00 5.03
603 604 3.016736 ACACCTAAATCAAATGGCGAGG 58.983 45.455 0.00 0.00 0.00 4.63
610 611 4.644103 AATCAAATGGCGAGGAATCAAG 57.356 40.909 0.00 0.00 0.00 3.02
620 621 3.063997 GCGAGGAATCAAGTGGTGTTATG 59.936 47.826 0.00 0.00 0.00 1.90
621 622 3.623060 CGAGGAATCAAGTGGTGTTATGG 59.377 47.826 0.00 0.00 0.00 2.74
625 626 2.465860 TCAAGTGGTGTTATGGGACG 57.534 50.000 0.00 0.00 0.00 4.79
631 632 1.520787 GTGTTATGGGACGAGGGCG 60.521 63.158 0.00 0.00 44.79 6.13
632 633 2.108362 GTTATGGGACGAGGGCGG 59.892 66.667 0.00 0.00 43.17 6.13
651 652 1.135960 GCAGGCCTAGAAGGAAGGAT 58.864 55.000 3.98 0.00 37.67 3.24
659 660 4.323868 GCCTAGAAGGAAGGATGACACTTT 60.324 45.833 0.00 0.00 37.67 2.66
691 692 3.988819 TGGTTGTTTATTTGCTTCTGGC 58.011 40.909 0.00 0.00 42.22 4.85
706 707 1.829849 TCTGGCACTGAGATCCTCAAG 59.170 52.381 0.00 0.00 40.18 3.02
718 719 0.041833 TCCTCAAGGGCAGCTACTCT 59.958 55.000 0.00 0.00 35.41 3.24
779 780 1.685355 GGCCACCAACCTTGCTTGTT 61.685 55.000 0.00 0.00 0.00 2.83
780 781 0.530431 GCCACCAACCTTGCTTGTTG 60.530 55.000 6.60 6.60 42.11 3.33
781 782 0.530431 CCACCAACCTTGCTTGTTGC 60.530 55.000 7.71 0.00 41.33 4.17
792 794 0.742990 GCTTGTTGCCATGCATGCAT 60.743 50.000 27.46 27.46 40.48 3.96
824 826 3.258622 GCCTCTCAACTAACTACACAGGT 59.741 47.826 0.00 0.00 0.00 4.00
843 853 8.428852 ACACAGGTTGCATGATACATATAAGTA 58.571 33.333 0.00 0.00 0.00 2.24
979 995 1.878088 CCATCCTCTTGCATCAATCCG 59.122 52.381 0.00 0.00 0.00 4.18
991 1007 2.159179 TCAATCCGATCCTCCTCACA 57.841 50.000 0.00 0.00 0.00 3.58
992 1008 1.757118 TCAATCCGATCCTCCTCACAC 59.243 52.381 0.00 0.00 0.00 3.82
993 1009 0.747255 AATCCGATCCTCCTCACACG 59.253 55.000 0.00 0.00 0.00 4.49
1016 1032 2.109799 CATGGTGAGCGCTAGGGG 59.890 66.667 11.50 0.00 0.00 4.79
1152 1168 0.321122 AAGACTACGTCGTCGAGGGT 60.321 55.000 18.29 11.25 38.90 4.34
1214 1230 0.105039 AAGCTCGCCAGGCTATGTAC 59.895 55.000 10.54 0.00 39.30 2.90
1221 1237 2.030185 CGCCAGGCTATGTACGTAAGAT 60.030 50.000 10.54 0.00 43.62 2.40
1223 1239 3.614390 GCCAGGCTATGTACGTAAGATCC 60.614 52.174 3.29 0.00 43.62 3.36
1225 1241 4.220821 CCAGGCTATGTACGTAAGATCCAT 59.779 45.833 0.00 0.00 43.62 3.41
1231 1247 9.216117 GGCTATGTACGTAAGATCCATTAATTT 57.784 33.333 0.00 0.00 43.62 1.82
1236 1252 9.104965 TGTACGTAAGATCCATTAATTTTCAGG 57.895 33.333 0.00 0.00 43.62 3.86
1237 1253 9.321562 GTACGTAAGATCCATTAATTTTCAGGA 57.678 33.333 0.00 0.00 43.62 3.86
1238 1254 8.801882 ACGTAAGATCCATTAATTTTCAGGAA 57.198 30.769 0.00 0.00 43.62 3.36
1240 1256 9.109393 CGTAAGATCCATTAATTTTCAGGAAGA 57.891 33.333 0.00 0.00 43.02 2.87
1253 1293 7.523293 TTTTCAGGAAGAAAGTTCATGCATA 57.477 32.000 0.00 0.00 46.24 3.14
1259 1299 6.888632 AGGAAGAAAGTTCATGCATAATGAGT 59.111 34.615 0.00 0.00 46.01 3.41
1260 1300 8.049117 AGGAAGAAAGTTCATGCATAATGAGTA 58.951 33.333 0.00 0.00 46.01 2.59
1261 1301 8.844244 GGAAGAAAGTTCATGCATAATGAGTAT 58.156 33.333 0.00 0.00 46.01 2.12
1926 1966 1.318158 GCATCAAGTTCCAGCTGGGG 61.318 60.000 32.23 16.31 37.22 4.96
2218 2264 2.365370 AGGAGAGCAGGCAGAGGG 60.365 66.667 0.00 0.00 0.00 4.30
2277 2323 4.087892 CAGGAGTGCGAGTGGGGG 62.088 72.222 0.00 0.00 0.00 5.40
2361 2407 1.521681 CCTAGGCGCCAACTAGCAC 60.522 63.158 31.54 0.00 37.25 4.40
2397 2459 2.450365 TGCGCGCACATTATAAGTTG 57.550 45.000 33.09 0.00 0.00 3.16
2407 2469 5.092781 CACATTATAAGTTGGTTTCGTGCC 58.907 41.667 0.00 0.00 0.00 5.01
2468 2530 9.331282 CTACCAGGAAGAAAGGTAATCAAATAG 57.669 37.037 0.00 0.00 37.44 1.73
2521 2625 9.282569 AGCAATGAAATATCTCTATTGTTCCTC 57.717 33.333 0.00 0.00 32.75 3.71
2565 2669 4.650734 TGATGGAGTTGACTACAATGCAA 58.349 39.130 0.00 0.00 40.79 4.08
2584 2688 8.845227 CAATGCAATGTAGTGGTACCATAAATA 58.155 33.333 19.72 6.44 0.00 1.40
2615 2719 4.165180 TGTGCCAGTGCCTCCTTTTATATA 59.835 41.667 0.00 0.00 36.33 0.86
2616 2720 5.163099 TGTGCCAGTGCCTCCTTTTATATAT 60.163 40.000 0.00 0.00 36.33 0.86
2638 2742 8.954834 ATATCTCTCTGATGAAATGTACTCCT 57.045 34.615 0.00 0.00 36.65 3.69
2639 2743 6.707440 TCTCTCTGATGAAATGTACTCCTC 57.293 41.667 0.00 0.00 0.00 3.71
2640 2744 5.596361 TCTCTCTGATGAAATGTACTCCTCC 59.404 44.000 0.00 0.00 0.00 4.30
2641 2745 4.339530 TCTCTGATGAAATGTACTCCTCCG 59.660 45.833 0.00 0.00 0.00 4.63
2642 2746 4.023980 TCTGATGAAATGTACTCCTCCGT 58.976 43.478 0.00 0.00 0.00 4.69
2643 2747 4.098044 TCTGATGAAATGTACTCCTCCGTC 59.902 45.833 0.00 0.00 0.00 4.79
2644 2748 3.132289 TGATGAAATGTACTCCTCCGTCC 59.868 47.826 0.00 0.00 0.00 4.79
2645 2749 1.829222 TGAAATGTACTCCTCCGTCCC 59.171 52.381 0.00 0.00 0.00 4.46
2646 2750 0.822164 AAATGTACTCCTCCGTCCCG 59.178 55.000 0.00 0.00 0.00 5.14
2647 2751 0.324091 AATGTACTCCTCCGTCCCGT 60.324 55.000 0.00 0.00 0.00 5.28
2648 2752 0.548031 ATGTACTCCTCCGTCCCGTA 59.452 55.000 0.00 0.00 0.00 4.02
2649 2753 0.327924 TGTACTCCTCCGTCCCGTAA 59.672 55.000 0.00 0.00 0.00 3.18
2650 2754 1.064463 TGTACTCCTCCGTCCCGTAAT 60.064 52.381 0.00 0.00 0.00 1.89
2651 2755 2.172505 TGTACTCCTCCGTCCCGTAATA 59.827 50.000 0.00 0.00 0.00 0.98
2652 2756 2.671896 ACTCCTCCGTCCCGTAATAT 57.328 50.000 0.00 0.00 0.00 1.28
2653 2757 3.795688 ACTCCTCCGTCCCGTAATATA 57.204 47.619 0.00 0.00 0.00 0.86
2654 2758 4.104383 ACTCCTCCGTCCCGTAATATAA 57.896 45.455 0.00 0.00 0.00 0.98
2655 2759 4.077822 ACTCCTCCGTCCCGTAATATAAG 58.922 47.826 0.00 0.00 0.00 1.73
2656 2760 4.202503 ACTCCTCCGTCCCGTAATATAAGA 60.203 45.833 0.00 0.00 0.00 2.10
2657 2761 4.330250 TCCTCCGTCCCGTAATATAAGAG 58.670 47.826 0.00 0.00 0.00 2.85
2658 2762 3.119566 CCTCCGTCCCGTAATATAAGAGC 60.120 52.174 0.00 0.00 0.00 4.09
2659 2763 2.485426 TCCGTCCCGTAATATAAGAGCG 59.515 50.000 0.00 0.00 0.00 5.03
2660 2764 2.227388 CCGTCCCGTAATATAAGAGCGT 59.773 50.000 0.00 0.00 0.00 5.07
2661 2765 3.304928 CCGTCCCGTAATATAAGAGCGTT 60.305 47.826 0.00 0.00 0.00 4.84
2662 2766 4.293415 CGTCCCGTAATATAAGAGCGTTT 58.707 43.478 0.00 0.00 0.00 3.60
2663 2767 4.741676 CGTCCCGTAATATAAGAGCGTTTT 59.258 41.667 0.00 0.00 0.00 2.43
2664 2768 5.232838 CGTCCCGTAATATAAGAGCGTTTTT 59.767 40.000 0.00 0.00 0.00 1.94
2693 2797 5.904362 AGTAGATCATTGAAAAAGGGCAC 57.096 39.130 0.00 0.00 0.00 5.01
2702 2806 5.452078 TTGAAAAAGGGCACTGAACTATG 57.548 39.130 0.00 0.00 0.00 2.23
2709 2813 2.609459 GGGCACTGAACTATGATGAACG 59.391 50.000 0.00 0.00 0.00 3.95
2717 2821 9.034544 CACTGAACTATGATGAACGAAATGATA 57.965 33.333 0.00 0.00 0.00 2.15
2718 2822 9.770097 ACTGAACTATGATGAACGAAATGATAT 57.230 29.630 0.00 0.00 0.00 1.63
2752 2856 3.025322 TGTTGGTTTGTGAATCTGGGT 57.975 42.857 0.00 0.00 0.00 4.51
2774 2878 1.695242 TGTAGGTTTCAGAGGGCGAAA 59.305 47.619 0.00 0.00 0.00 3.46
2801 2905 0.256752 TCATCGACCCGGGACTCTAA 59.743 55.000 32.02 6.50 0.00 2.10
2871 2979 1.801178 CCGACAGCCTTCAAACTCTTC 59.199 52.381 0.00 0.00 0.00 2.87
2884 2992 7.361286 CCTTCAAACTCTTCACTGGTAATAAGC 60.361 40.741 0.00 0.00 0.00 3.09
2900 3008 6.967199 GGTAATAAGCGCATTATATTGCTTCC 59.033 38.462 11.47 7.29 43.77 3.46
2901 3009 3.542712 AAGCGCATTATATTGCTTCCG 57.457 42.857 11.47 3.73 43.77 4.30
2912 3020 1.021202 TTGCTTCCGAGTGTTTGGTG 58.979 50.000 0.00 0.00 0.00 4.17
2933 3041 5.307196 GGTGACCCAGTTATCCACATATACT 59.693 44.000 0.00 0.00 0.00 2.12
2934 3042 6.495872 GGTGACCCAGTTATCCACATATACTA 59.504 42.308 0.00 0.00 0.00 1.82
2935 3043 7.309867 GGTGACCCAGTTATCCACATATACTAG 60.310 44.444 0.00 0.00 0.00 2.57
2936 3044 6.724441 TGACCCAGTTATCCACATATACTAGG 59.276 42.308 0.00 0.00 0.00 3.02
2937 3045 6.023603 ACCCAGTTATCCACATATACTAGGG 58.976 44.000 0.00 0.00 36.17 3.53
2938 3046 5.104900 CCCAGTTATCCACATATACTAGGGC 60.105 48.000 0.00 0.00 0.00 5.19
2939 3047 5.721960 CCAGTTATCCACATATACTAGGGCT 59.278 44.000 0.00 0.00 0.00 5.19
2940 3048 6.895756 CCAGTTATCCACATATACTAGGGCTA 59.104 42.308 0.00 0.00 0.00 3.93
2941 3049 7.068839 CCAGTTATCCACATATACTAGGGCTAG 59.931 44.444 0.00 0.00 39.04 3.42
2942 3050 6.608002 AGTTATCCACATATACTAGGGCTAGC 59.392 42.308 6.04 6.04 36.66 3.42
2943 3051 4.397919 TCCACATATACTAGGGCTAGCA 57.602 45.455 18.24 0.00 36.66 3.49
2944 3052 4.947883 TCCACATATACTAGGGCTAGCAT 58.052 43.478 18.24 7.00 36.66 3.79
2945 3053 4.711846 TCCACATATACTAGGGCTAGCATG 59.288 45.833 18.24 11.14 36.66 4.06
2946 3054 4.141846 CCACATATACTAGGGCTAGCATGG 60.142 50.000 18.24 8.99 36.66 3.66
2947 3055 4.711846 CACATATACTAGGGCTAGCATGGA 59.288 45.833 18.24 0.00 36.66 3.41
2948 3056 5.187772 CACATATACTAGGGCTAGCATGGAA 59.812 44.000 18.24 0.00 36.66 3.53
2949 3057 5.785423 ACATATACTAGGGCTAGCATGGAAA 59.215 40.000 18.24 0.00 36.66 3.13
2950 3058 6.445139 ACATATACTAGGGCTAGCATGGAAAT 59.555 38.462 18.24 5.62 36.66 2.17
2951 3059 3.498774 ACTAGGGCTAGCATGGAAATG 57.501 47.619 18.24 0.50 36.66 2.32
2952 3060 2.780010 ACTAGGGCTAGCATGGAAATGT 59.220 45.455 18.24 1.13 36.66 2.71
2953 3061 3.973973 ACTAGGGCTAGCATGGAAATGTA 59.026 43.478 18.24 0.00 36.66 2.29
2954 3062 4.599241 ACTAGGGCTAGCATGGAAATGTAT 59.401 41.667 18.24 0.00 36.66 2.29
2955 3063 4.026356 AGGGCTAGCATGGAAATGTATC 57.974 45.455 18.24 0.00 0.00 2.24
2956 3064 3.654806 AGGGCTAGCATGGAAATGTATCT 59.345 43.478 18.24 0.00 0.00 1.98
2957 3065 4.846367 AGGGCTAGCATGGAAATGTATCTA 59.154 41.667 18.24 0.00 0.00 1.98
3008 3176 1.065491 TCATGCTAGCGAATGTGGGTT 60.065 47.619 10.77 0.00 0.00 4.11
3011 3179 1.165270 GCTAGCGAATGTGGGTTTGT 58.835 50.000 0.00 0.00 0.00 2.83
3093 3270 2.504175 TCATACAAGTTCTAGGCCACCC 59.496 50.000 5.01 0.00 0.00 4.61
3105 3282 0.035820 GGCCACCCACTGAAATCGTA 60.036 55.000 0.00 0.00 0.00 3.43
3112 3289 2.632377 CCACTGAAATCGTATGTGCCT 58.368 47.619 0.00 0.00 0.00 4.75
3113 3290 3.431626 CCCACTGAAATCGTATGTGCCTA 60.432 47.826 0.00 0.00 0.00 3.93
3151 3328 5.717119 ATTGGTAAAACCTATGAGCTCCT 57.283 39.130 12.15 3.56 39.58 3.69
3152 3329 5.514500 TTGGTAAAACCTATGAGCTCCTT 57.486 39.130 12.15 0.92 39.58 3.36
3153 3330 5.514500 TGGTAAAACCTATGAGCTCCTTT 57.486 39.130 12.15 4.10 39.58 3.11
3154 3331 6.630203 TGGTAAAACCTATGAGCTCCTTTA 57.370 37.500 12.15 3.19 39.58 1.85
3155 3332 6.412214 TGGTAAAACCTATGAGCTCCTTTAC 58.588 40.000 12.15 13.50 39.58 2.01
3156 3333 5.522824 GGTAAAACCTATGAGCTCCTTTACG 59.477 44.000 12.15 0.00 34.73 3.18
3157 3334 3.821421 AACCTATGAGCTCCTTTACGG 57.179 47.619 12.15 5.71 0.00 4.02
3158 3335 2.748388 ACCTATGAGCTCCTTTACGGT 58.252 47.619 12.15 6.35 0.00 4.83
3159 3336 2.431057 ACCTATGAGCTCCTTTACGGTG 59.569 50.000 12.15 0.00 0.00 4.94
3160 3337 2.693591 CCTATGAGCTCCTTTACGGTGA 59.306 50.000 12.15 0.00 0.00 4.02
3161 3338 3.322254 CCTATGAGCTCCTTTACGGTGAT 59.678 47.826 12.15 0.00 0.00 3.06
3162 3339 3.914426 ATGAGCTCCTTTACGGTGATT 57.086 42.857 12.15 0.00 0.00 2.57
3163 3340 2.972625 TGAGCTCCTTTACGGTGATTG 58.027 47.619 12.15 0.00 0.00 2.67
3164 3341 2.280628 GAGCTCCTTTACGGTGATTGG 58.719 52.381 0.87 0.00 0.00 3.16
3165 3342 1.065418 AGCTCCTTTACGGTGATTGGG 60.065 52.381 0.00 0.00 0.00 4.12
3166 3343 2.017113 GCTCCTTTACGGTGATTGGGG 61.017 57.143 0.00 0.00 0.00 4.96
3167 3344 0.034863 TCCTTTACGGTGATTGGGGC 60.035 55.000 0.00 0.00 0.00 5.80
3168 3345 0.322997 CCTTTACGGTGATTGGGGCA 60.323 55.000 0.00 0.00 0.00 5.36
3169 3346 1.094785 CTTTACGGTGATTGGGGCAG 58.905 55.000 0.00 0.00 0.00 4.85
3170 3347 0.402504 TTTACGGTGATTGGGGCAGT 59.597 50.000 0.00 0.00 0.00 4.40
3171 3348 1.277579 TTACGGTGATTGGGGCAGTA 58.722 50.000 0.00 0.00 0.00 2.74
3172 3349 0.538118 TACGGTGATTGGGGCAGTAC 59.462 55.000 0.00 0.00 0.00 2.73
3173 3350 1.198759 ACGGTGATTGGGGCAGTACT 61.199 55.000 0.00 0.00 0.00 2.73
3174 3351 0.744414 CGGTGATTGGGGCAGTACTG 60.744 60.000 18.93 18.93 0.00 2.74
3175 3352 0.394352 GGTGATTGGGGCAGTACTGG 60.394 60.000 23.95 6.49 0.00 4.00
3176 3353 0.618458 GTGATTGGGGCAGTACTGGA 59.382 55.000 23.95 0.00 0.00 3.86
3177 3354 0.911769 TGATTGGGGCAGTACTGGAG 59.088 55.000 23.95 0.00 0.00 3.86
3178 3355 0.912486 GATTGGGGCAGTACTGGAGT 59.088 55.000 23.95 0.00 0.00 3.85
3179 3356 2.116238 GATTGGGGCAGTACTGGAGTA 58.884 52.381 23.95 0.00 0.00 2.59
3197 3374 2.614779 GTACTTTCGAGTACTTGCCCC 58.385 52.381 5.12 0.00 40.89 5.80
3198 3375 1.349067 ACTTTCGAGTACTTGCCCCT 58.651 50.000 5.12 0.00 0.00 4.79
3199 3376 1.275573 ACTTTCGAGTACTTGCCCCTC 59.724 52.381 5.12 0.00 0.00 4.30
3200 3377 0.611714 TTTCGAGTACTTGCCCCTCC 59.388 55.000 5.12 0.00 0.00 4.30
3201 3378 1.601419 TTCGAGTACTTGCCCCTCCG 61.601 60.000 5.12 0.00 0.00 4.63
3202 3379 2.050350 CGAGTACTTGCCCCTCCGA 61.050 63.158 0.00 0.00 0.00 4.55
3203 3380 1.392710 CGAGTACTTGCCCCTCCGAT 61.393 60.000 0.00 0.00 0.00 4.18
3204 3381 0.831307 GAGTACTTGCCCCTCCGATT 59.169 55.000 0.00 0.00 0.00 3.34
3205 3382 1.209747 GAGTACTTGCCCCTCCGATTT 59.790 52.381 0.00 0.00 0.00 2.17
3206 3383 1.633945 AGTACTTGCCCCTCCGATTTT 59.366 47.619 0.00 0.00 0.00 1.82
3207 3384 2.041216 AGTACTTGCCCCTCCGATTTTT 59.959 45.455 0.00 0.00 0.00 1.94
3208 3385 2.891191 ACTTGCCCCTCCGATTTTTA 57.109 45.000 0.00 0.00 0.00 1.52
3209 3386 3.382083 ACTTGCCCCTCCGATTTTTAT 57.618 42.857 0.00 0.00 0.00 1.40
3210 3387 3.708451 ACTTGCCCCTCCGATTTTTATT 58.292 40.909 0.00 0.00 0.00 1.40
3211 3388 4.862371 ACTTGCCCCTCCGATTTTTATTA 58.138 39.130 0.00 0.00 0.00 0.98
3212 3389 4.887655 ACTTGCCCCTCCGATTTTTATTAG 59.112 41.667 0.00 0.00 0.00 1.73
3213 3390 3.219281 TGCCCCTCCGATTTTTATTAGC 58.781 45.455 0.00 0.00 0.00 3.09
3214 3391 2.557056 GCCCCTCCGATTTTTATTAGCC 59.443 50.000 0.00 0.00 0.00 3.93
3215 3392 2.812011 CCCCTCCGATTTTTATTAGCCG 59.188 50.000 0.00 0.00 0.00 5.52
3216 3393 3.473625 CCCTCCGATTTTTATTAGCCGT 58.526 45.455 0.00 0.00 0.00 5.68
3217 3394 3.497262 CCCTCCGATTTTTATTAGCCGTC 59.503 47.826 0.00 0.00 0.00 4.79
3218 3395 3.497262 CCTCCGATTTTTATTAGCCGTCC 59.503 47.826 0.00 0.00 0.00 4.79
3219 3396 3.125316 TCCGATTTTTATTAGCCGTCCG 58.875 45.455 0.00 0.00 0.00 4.79
3220 3397 3.125316 CCGATTTTTATTAGCCGTCCGA 58.875 45.455 0.00 0.00 0.00 4.55
3221 3398 3.744426 CCGATTTTTATTAGCCGTCCGAT 59.256 43.478 0.00 0.00 0.00 4.18
3222 3399 4.212636 CCGATTTTTATTAGCCGTCCGATT 59.787 41.667 0.00 0.00 0.00 3.34
3223 3400 5.277634 CCGATTTTTATTAGCCGTCCGATTT 60.278 40.000 0.00 0.00 0.00 2.17
3224 3401 5.619607 CGATTTTTATTAGCCGTCCGATTTG 59.380 40.000 0.00 0.00 0.00 2.32
3225 3402 4.886247 TTTTATTAGCCGTCCGATTTGG 57.114 40.909 0.00 0.00 40.09 3.28
3226 3403 3.547054 TTATTAGCCGTCCGATTTGGT 57.453 42.857 0.00 0.00 39.52 3.67
3227 3404 1.663695 ATTAGCCGTCCGATTTGGTG 58.336 50.000 0.00 0.00 39.52 4.17
3228 3405 0.391927 TTAGCCGTCCGATTTGGTGG 60.392 55.000 0.00 0.00 39.52 4.61
3229 3406 2.246761 TAGCCGTCCGATTTGGTGGG 62.247 60.000 6.24 2.97 39.52 4.61
3230 3407 2.437716 CCGTCCGATTTGGTGGGG 60.438 66.667 0.00 0.00 39.52 4.96
3231 3408 2.437716 CGTCCGATTTGGTGGGGG 60.438 66.667 0.00 0.00 39.52 5.40
3291 3468 7.902920 ATGGTTCAGGATAAAATATTGTGCT 57.097 32.000 0.00 0.00 0.00 4.40
3292 3469 7.716799 TGGTTCAGGATAAAATATTGTGCTT 57.283 32.000 0.00 0.00 0.00 3.91
3293 3470 8.133024 TGGTTCAGGATAAAATATTGTGCTTT 57.867 30.769 0.00 0.00 0.00 3.51
3294 3471 8.250332 TGGTTCAGGATAAAATATTGTGCTTTC 58.750 33.333 0.00 0.00 0.00 2.62
3295 3472 8.250332 GGTTCAGGATAAAATATTGTGCTTTCA 58.750 33.333 0.00 0.00 0.00 2.69
3296 3473 9.638239 GTTCAGGATAAAATATTGTGCTTTCAA 57.362 29.630 0.00 0.00 0.00 2.69
3297 3474 9.638239 TTCAGGATAAAATATTGTGCTTTCAAC 57.362 29.630 0.00 0.00 0.00 3.18
3298 3475 8.250332 TCAGGATAAAATATTGTGCTTTCAACC 58.750 33.333 0.00 0.00 0.00 3.77
3299 3476 7.220683 CAGGATAAAATATTGTGCTTTCAACCG 59.779 37.037 0.00 0.00 0.00 4.44
3300 3477 7.122055 AGGATAAAATATTGTGCTTTCAACCGA 59.878 33.333 0.00 0.00 0.00 4.69
3301 3478 7.920682 GGATAAAATATTGTGCTTTCAACCGAT 59.079 33.333 0.00 0.00 0.00 4.18
3302 3479 8.856490 ATAAAATATTGTGCTTTCAACCGATC 57.144 30.769 0.00 0.00 0.00 3.69
3303 3480 5.895636 AATATTGTGCTTTCAACCGATCA 57.104 34.783 0.00 0.00 0.00 2.92
3304 3481 6.455360 AATATTGTGCTTTCAACCGATCAT 57.545 33.333 0.00 0.00 0.00 2.45
3305 3482 3.557577 TTGTGCTTTCAACCGATCATG 57.442 42.857 0.00 0.00 0.00 3.07
3306 3483 2.503331 TGTGCTTTCAACCGATCATGT 58.497 42.857 0.00 0.00 0.00 3.21
3307 3484 2.483877 TGTGCTTTCAACCGATCATGTC 59.516 45.455 0.00 0.00 0.00 3.06
3308 3485 2.083774 TGCTTTCAACCGATCATGTCC 58.916 47.619 0.00 0.00 0.00 4.02
3309 3486 2.083774 GCTTTCAACCGATCATGTCCA 58.916 47.619 0.00 0.00 0.00 4.02
3310 3487 2.159517 GCTTTCAACCGATCATGTCCAC 60.160 50.000 0.00 0.00 0.00 4.02
3311 3488 1.720805 TTCAACCGATCATGTCCACG 58.279 50.000 0.00 0.00 0.00 4.94
3312 3489 0.892063 TCAACCGATCATGTCCACGA 59.108 50.000 0.00 0.00 0.00 4.35
3313 3490 0.999406 CAACCGATCATGTCCACGAC 59.001 55.000 0.00 0.00 0.00 4.34
3314 3491 0.108329 AACCGATCATGTCCACGACC 60.108 55.000 0.00 0.00 0.00 4.79
3315 3492 1.254975 ACCGATCATGTCCACGACCA 61.255 55.000 0.00 0.00 0.00 4.02
3316 3493 0.528466 CCGATCATGTCCACGACCAG 60.528 60.000 0.00 0.00 0.00 4.00
3317 3494 0.455815 CGATCATGTCCACGACCAGA 59.544 55.000 0.00 0.00 0.00 3.86
3318 3495 1.135112 CGATCATGTCCACGACCAGAA 60.135 52.381 0.00 0.00 0.00 3.02
3319 3496 2.271800 GATCATGTCCACGACCAGAAC 58.728 52.381 0.00 0.00 0.00 3.01
3320 3497 0.320374 TCATGTCCACGACCAGAACC 59.680 55.000 0.00 0.00 0.00 3.62
3321 3498 0.034756 CATGTCCACGACCAGAACCA 59.965 55.000 0.00 0.00 0.00 3.67
3322 3499 0.034896 ATGTCCACGACCAGAACCAC 59.965 55.000 0.00 0.00 0.00 4.16
3323 3500 1.331399 TGTCCACGACCAGAACCACA 61.331 55.000 0.00 0.00 0.00 4.17
3324 3501 0.878961 GTCCACGACCAGAACCACAC 60.879 60.000 0.00 0.00 0.00 3.82
3325 3502 1.597027 CCACGACCAGAACCACACC 60.597 63.158 0.00 0.00 0.00 4.16
3326 3503 1.445942 CACGACCAGAACCACACCT 59.554 57.895 0.00 0.00 0.00 4.00
3327 3504 0.677288 CACGACCAGAACCACACCTA 59.323 55.000 0.00 0.00 0.00 3.08
3328 3505 0.966920 ACGACCAGAACCACACCTAG 59.033 55.000 0.00 0.00 0.00 3.02
3329 3506 0.966920 CGACCAGAACCACACCTAGT 59.033 55.000 0.00 0.00 0.00 2.57
3330 3507 2.165167 CGACCAGAACCACACCTAGTA 58.835 52.381 0.00 0.00 0.00 1.82
3331 3508 2.163815 CGACCAGAACCACACCTAGTAG 59.836 54.545 0.00 0.00 0.00 2.57
3332 3509 3.428532 GACCAGAACCACACCTAGTAGA 58.571 50.000 0.00 0.00 0.00 2.59
3333 3510 4.024670 GACCAGAACCACACCTAGTAGAT 58.975 47.826 0.00 0.00 0.00 1.98
3334 3511 4.426704 ACCAGAACCACACCTAGTAGATT 58.573 43.478 0.00 0.00 0.00 2.40
3335 3512 4.223032 ACCAGAACCACACCTAGTAGATTG 59.777 45.833 0.00 0.00 0.00 2.67
3336 3513 4.466370 CCAGAACCACACCTAGTAGATTGA 59.534 45.833 0.00 0.00 0.00 2.57
3337 3514 5.129485 CCAGAACCACACCTAGTAGATTGAT 59.871 44.000 0.00 0.00 0.00 2.57
3338 3515 6.276847 CAGAACCACACCTAGTAGATTGATC 58.723 44.000 0.00 0.00 0.00 2.92
3339 3516 5.364157 AGAACCACACCTAGTAGATTGATCC 59.636 44.000 0.00 0.00 0.00 3.36
3340 3517 4.620723 ACCACACCTAGTAGATTGATCCA 58.379 43.478 0.00 0.00 0.00 3.41
3341 3518 5.030147 ACCACACCTAGTAGATTGATCCAA 58.970 41.667 0.00 0.00 0.00 3.53
3342 3519 5.129485 ACCACACCTAGTAGATTGATCCAAG 59.871 44.000 0.00 0.00 0.00 3.61
3343 3520 5.363868 CCACACCTAGTAGATTGATCCAAGA 59.636 44.000 0.00 0.00 0.00 3.02
3344 3521 6.462207 CCACACCTAGTAGATTGATCCAAGAG 60.462 46.154 0.00 0.00 0.00 2.85
3345 3522 5.600484 ACACCTAGTAGATTGATCCAAGAGG 59.400 44.000 0.00 0.00 0.00 3.69
3346 3523 5.600484 CACCTAGTAGATTGATCCAAGAGGT 59.400 44.000 0.00 0.00 33.89 3.85
3347 3524 5.836358 ACCTAGTAGATTGATCCAAGAGGTC 59.164 44.000 0.00 0.00 35.89 3.85
3348 3525 5.835819 CCTAGTAGATTGATCCAAGAGGTCA 59.164 44.000 0.00 0.00 35.89 4.02
3349 3526 6.325028 CCTAGTAGATTGATCCAAGAGGTCAA 59.675 42.308 0.00 0.00 38.43 3.18
3350 3527 6.232581 AGTAGATTGATCCAAGAGGTCAAG 57.767 41.667 0.00 0.00 37.90 3.02
3351 3528 5.723887 AGTAGATTGATCCAAGAGGTCAAGT 59.276 40.000 0.00 0.00 37.90 3.16
3352 3529 5.096443 AGATTGATCCAAGAGGTCAAGTC 57.904 43.478 0.00 0.00 37.90 3.01
3353 3530 3.703001 TTGATCCAAGAGGTCAAGTCC 57.297 47.619 0.00 0.00 33.18 3.85
3354 3531 2.907892 TGATCCAAGAGGTCAAGTCCT 58.092 47.619 0.00 0.00 40.97 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 9.605955 GCAGTTAAAAACAAAACAAAACATTCT 57.394 25.926 0.00 0.00 0.00 2.40
97 98 9.387123 TGCAGTTAAAAACAAAACAAAACATTC 57.613 25.926 0.00 0.00 0.00 2.67
98 99 9.392021 CTGCAGTTAAAAACAAAACAAAACATT 57.608 25.926 5.25 0.00 0.00 2.71
99 100 8.020244 CCTGCAGTTAAAAACAAAACAAAACAT 58.980 29.630 13.81 0.00 0.00 2.71
102 103 7.730364 TCCTGCAGTTAAAAACAAAACAAAA 57.270 28.000 13.81 0.00 0.00 2.44
103 104 7.730364 TTCCTGCAGTTAAAAACAAAACAAA 57.270 28.000 13.81 0.00 0.00 2.83
104 105 7.913674 ATTCCTGCAGTTAAAAACAAAACAA 57.086 28.000 13.81 0.00 0.00 2.83
105 106 7.913674 AATTCCTGCAGTTAAAAACAAAACA 57.086 28.000 13.81 0.00 0.00 2.83
106 107 9.697250 GTAAATTCCTGCAGTTAAAAACAAAAC 57.303 29.630 13.81 0.00 0.00 2.43
107 108 9.660180 AGTAAATTCCTGCAGTTAAAAACAAAA 57.340 25.926 13.81 0.00 0.00 2.44
153 154 5.554070 ACCCCATAAGTTGTACACTTGTAC 58.446 41.667 11.87 11.87 45.98 2.90
154 155 5.829062 ACCCCATAAGTTGTACACTTGTA 57.171 39.130 16.26 3.35 45.98 2.41
155 156 4.717279 ACCCCATAAGTTGTACACTTGT 57.283 40.909 16.26 9.88 45.98 3.16
156 157 5.801380 AGTACCCCATAAGTTGTACACTTG 58.199 41.667 16.26 5.89 45.98 3.16
158 159 5.280317 CCAAGTACCCCATAAGTTGTACACT 60.280 44.000 0.00 0.00 36.81 3.55
159 160 4.939439 CCAAGTACCCCATAAGTTGTACAC 59.061 45.833 0.00 0.00 36.81 2.90
160 161 4.845225 TCCAAGTACCCCATAAGTTGTACA 59.155 41.667 0.00 0.00 36.81 2.90
164 165 3.054361 AGCTCCAAGTACCCCATAAGTTG 60.054 47.826 0.00 0.00 0.00 3.16
197 198 4.100653 AGCAAGATACTGCAGCAGATAGAA 59.899 41.667 29.70 8.79 45.18 2.10
219 220 0.252479 AGGAGGATGAGCAGCAACAG 59.748 55.000 0.00 0.00 0.00 3.16
220 221 0.035725 CAGGAGGATGAGCAGCAACA 60.036 55.000 0.00 0.00 0.00 3.33
239 240 5.959618 AGTTTATGGTAAGAACAACCTGC 57.040 39.130 0.00 0.00 37.91 4.85
240 241 6.677913 CCAAGTTTATGGTAAGAACAACCTG 58.322 40.000 0.00 0.00 37.91 4.00
241 242 6.894339 CCAAGTTTATGGTAAGAACAACCT 57.106 37.500 0.00 0.00 37.91 3.50
285 286 3.614092 AGGCACCACACTTGAATGATAG 58.386 45.455 0.00 0.00 0.00 2.08
355 356 2.438763 TCTAGGTCTTCCTCTCCTACCG 59.561 54.545 0.00 0.00 43.94 4.02
356 357 4.523168 TTCTAGGTCTTCCTCTCCTACC 57.477 50.000 0.00 0.00 43.94 3.18
408 409 2.290260 TGAATCGACCTGCACCAGAATT 60.290 45.455 0.00 0.00 32.44 2.17
409 410 1.278985 TGAATCGACCTGCACCAGAAT 59.721 47.619 0.00 0.00 32.44 2.40
413 414 0.320683 CTGTGAATCGACCTGCACCA 60.321 55.000 0.00 0.00 0.00 4.17
414 415 0.037326 TCTGTGAATCGACCTGCACC 60.037 55.000 0.00 0.00 0.00 5.01
415 416 2.015736 ATCTGTGAATCGACCTGCAC 57.984 50.000 0.00 0.00 0.00 4.57
416 417 2.768253 AATCTGTGAATCGACCTGCA 57.232 45.000 0.00 0.00 0.00 4.41
418 419 3.384789 TCCCTAATCTGTGAATCGACCTG 59.615 47.826 0.00 0.00 0.00 4.00
420 421 4.402056 TTCCCTAATCTGTGAATCGACC 57.598 45.455 0.00 0.00 0.00 4.79
421 422 4.571176 GGTTTCCCTAATCTGTGAATCGAC 59.429 45.833 0.00 0.00 0.00 4.20
423 424 4.513442 TGGTTTCCCTAATCTGTGAATCG 58.487 43.478 0.00 0.00 0.00 3.34
424 425 7.122650 TGAAATGGTTTCCCTAATCTGTGAATC 59.877 37.037 0.47 0.00 38.90 2.52
425 426 6.953520 TGAAATGGTTTCCCTAATCTGTGAAT 59.046 34.615 0.47 0.00 38.90 2.57
426 427 6.208599 GTGAAATGGTTTCCCTAATCTGTGAA 59.791 38.462 0.47 0.00 38.90 3.18
427 428 5.710099 GTGAAATGGTTTCCCTAATCTGTGA 59.290 40.000 0.47 0.00 38.90 3.58
428 429 5.105756 GGTGAAATGGTTTCCCTAATCTGTG 60.106 44.000 0.47 0.00 38.90 3.66
429 430 5.016831 GGTGAAATGGTTTCCCTAATCTGT 58.983 41.667 0.47 0.00 38.90 3.41
430 431 4.402474 GGGTGAAATGGTTTCCCTAATCTG 59.598 45.833 0.47 0.00 38.90 2.90
431 432 4.294970 AGGGTGAAATGGTTTCCCTAATCT 59.705 41.667 0.00 0.00 45.56 2.40
432 433 4.610333 AGGGTGAAATGGTTTCCCTAATC 58.390 43.478 0.00 0.00 45.56 1.75
433 434 4.692523 AGGGTGAAATGGTTTCCCTAAT 57.307 40.909 0.00 0.00 45.56 1.73
437 438 2.171003 CAGAGGGTGAAATGGTTTCCC 58.829 52.381 0.47 0.00 38.90 3.97
438 439 2.876581 ACAGAGGGTGAAATGGTTTCC 58.123 47.619 0.47 0.00 38.90 3.13
439 440 3.888930 TCAACAGAGGGTGAAATGGTTTC 59.111 43.478 0.00 0.00 40.08 2.78
440 441 3.891366 CTCAACAGAGGGTGAAATGGTTT 59.109 43.478 0.00 0.00 0.00 3.27
441 442 3.138283 TCTCAACAGAGGGTGAAATGGTT 59.862 43.478 0.00 0.00 0.00 3.67
442 443 2.711009 TCTCAACAGAGGGTGAAATGGT 59.289 45.455 0.00 0.00 0.00 3.55
443 444 3.423539 TCTCAACAGAGGGTGAAATGG 57.576 47.619 0.00 0.00 0.00 3.16
444 445 5.065914 TCTTTCTCAACAGAGGGTGAAATG 58.934 41.667 0.00 0.00 0.00 2.32
445 446 5.310409 TCTTTCTCAACAGAGGGTGAAAT 57.690 39.130 0.00 0.00 0.00 2.17
446 447 4.771114 TCTTTCTCAACAGAGGGTGAAA 57.229 40.909 0.00 0.00 0.00 2.69
447 448 4.164221 AGTTCTTTCTCAACAGAGGGTGAA 59.836 41.667 0.00 0.00 0.00 3.18
448 449 3.711704 AGTTCTTTCTCAACAGAGGGTGA 59.288 43.478 0.00 0.00 0.00 4.02
449 450 3.812053 CAGTTCTTTCTCAACAGAGGGTG 59.188 47.826 0.00 0.00 0.00 4.61
450 451 3.456277 ACAGTTCTTTCTCAACAGAGGGT 59.544 43.478 0.00 0.00 0.00 4.34
451 452 4.078639 ACAGTTCTTTCTCAACAGAGGG 57.921 45.455 0.00 0.00 0.00 4.30
452 453 5.731686 GCAAACAGTTCTTTCTCAACAGAGG 60.732 44.000 0.00 0.00 0.00 3.69
453 454 5.269313 GCAAACAGTTCTTTCTCAACAGAG 58.731 41.667 0.00 0.00 0.00 3.35
454 455 4.096382 GGCAAACAGTTCTTTCTCAACAGA 59.904 41.667 0.00 0.00 0.00 3.41
455 456 4.354587 GGCAAACAGTTCTTTCTCAACAG 58.645 43.478 0.00 0.00 0.00 3.16
456 457 3.130340 GGGCAAACAGTTCTTTCTCAACA 59.870 43.478 0.00 0.00 0.00 3.33
457 458 3.381590 AGGGCAAACAGTTCTTTCTCAAC 59.618 43.478 0.00 0.00 0.00 3.18
458 459 3.631250 AGGGCAAACAGTTCTTTCTCAA 58.369 40.909 0.00 0.00 0.00 3.02
459 460 3.297134 AGGGCAAACAGTTCTTTCTCA 57.703 42.857 0.00 0.00 0.00 3.27
460 461 6.655425 AGTTATAGGGCAAACAGTTCTTTCTC 59.345 38.462 0.00 0.00 0.00 2.87
461 462 6.543735 AGTTATAGGGCAAACAGTTCTTTCT 58.456 36.000 0.00 0.00 0.00 2.52
462 463 6.819397 AGTTATAGGGCAAACAGTTCTTTC 57.181 37.500 0.00 0.00 0.00 2.62
463 464 6.015434 CCAAGTTATAGGGCAAACAGTTCTTT 60.015 38.462 0.00 0.00 0.00 2.52
464 465 5.476945 CCAAGTTATAGGGCAAACAGTTCTT 59.523 40.000 0.00 0.00 0.00 2.52
465 466 5.010282 CCAAGTTATAGGGCAAACAGTTCT 58.990 41.667 0.00 0.00 0.00 3.01
466 467 4.157840 CCCAAGTTATAGGGCAAACAGTTC 59.842 45.833 0.00 0.00 38.44 3.01
467 468 4.086457 CCCAAGTTATAGGGCAAACAGTT 58.914 43.478 0.00 0.00 38.44 3.16
468 469 3.332485 TCCCAAGTTATAGGGCAAACAGT 59.668 43.478 0.00 0.00 45.07 3.55
469 470 3.963129 TCCCAAGTTATAGGGCAAACAG 58.037 45.455 0.00 0.00 45.07 3.16
470 471 4.017958 TGATCCCAAGTTATAGGGCAAACA 60.018 41.667 0.00 0.00 45.07 2.83
471 472 4.532834 TGATCCCAAGTTATAGGGCAAAC 58.467 43.478 0.00 0.00 45.07 2.93
472 473 4.229582 ACTGATCCCAAGTTATAGGGCAAA 59.770 41.667 0.00 0.00 45.07 3.68
473 474 3.785887 ACTGATCCCAAGTTATAGGGCAA 59.214 43.478 0.00 0.00 45.07 4.52
474 475 3.136443 CACTGATCCCAAGTTATAGGGCA 59.864 47.826 0.00 0.00 45.07 5.36
475 476 3.496870 CCACTGATCCCAAGTTATAGGGC 60.497 52.174 0.00 0.00 45.07 5.19
476 477 3.496870 GCCACTGATCCCAAGTTATAGGG 60.497 52.174 0.00 0.00 46.90 3.53
477 478 3.136443 TGCCACTGATCCCAAGTTATAGG 59.864 47.826 0.00 0.00 0.00 2.57
478 479 4.384056 CTGCCACTGATCCCAAGTTATAG 58.616 47.826 0.00 0.00 0.00 1.31
479 480 3.136443 CCTGCCACTGATCCCAAGTTATA 59.864 47.826 0.00 0.00 0.00 0.98
480 481 2.092212 CCTGCCACTGATCCCAAGTTAT 60.092 50.000 0.00 0.00 0.00 1.89
481 482 1.281867 CCTGCCACTGATCCCAAGTTA 59.718 52.381 0.00 0.00 0.00 2.24
482 483 0.038744 CCTGCCACTGATCCCAAGTT 59.961 55.000 0.00 0.00 0.00 2.66
483 484 1.136329 ACCTGCCACTGATCCCAAGT 61.136 55.000 0.00 0.00 0.00 3.16
484 485 0.679002 CACCTGCCACTGATCCCAAG 60.679 60.000 0.00 0.00 0.00 3.61
485 486 1.133181 TCACCTGCCACTGATCCCAA 61.133 55.000 0.00 0.00 0.00 4.12
486 487 1.538629 TCACCTGCCACTGATCCCA 60.539 57.895 0.00 0.00 0.00 4.37
487 488 1.222936 CTCACCTGCCACTGATCCC 59.777 63.158 0.00 0.00 0.00 3.85
488 489 1.451028 GCTCACCTGCCACTGATCC 60.451 63.158 0.00 0.00 0.00 3.36
489 490 0.035630 AAGCTCACCTGCCACTGATC 60.036 55.000 0.00 0.00 0.00 2.92
490 491 0.035630 GAAGCTCACCTGCCACTGAT 60.036 55.000 0.00 0.00 0.00 2.90
491 492 1.372683 GAAGCTCACCTGCCACTGA 59.627 57.895 0.00 0.00 0.00 3.41
492 493 2.031516 CGAAGCTCACCTGCCACTG 61.032 63.158 0.00 0.00 0.00 3.66
493 494 1.548357 ATCGAAGCTCACCTGCCACT 61.548 55.000 0.00 0.00 0.00 4.00
494 495 1.078848 ATCGAAGCTCACCTGCCAC 60.079 57.895 0.00 0.00 0.00 5.01
495 496 1.219124 GATCGAAGCTCACCTGCCA 59.781 57.895 0.00 0.00 0.00 4.92
496 497 0.809241 CTGATCGAAGCTCACCTGCC 60.809 60.000 0.00 0.00 0.00 4.85
497 498 0.174389 TCTGATCGAAGCTCACCTGC 59.826 55.000 0.00 0.00 0.00 4.85
498 499 2.159128 ACATCTGATCGAAGCTCACCTG 60.159 50.000 0.00 0.00 0.00 4.00
499 500 2.106566 ACATCTGATCGAAGCTCACCT 58.893 47.619 0.00 0.00 0.00 4.00
500 501 2.159184 TCACATCTGATCGAAGCTCACC 60.159 50.000 0.00 0.00 0.00 4.02
501 502 3.156511 TCACATCTGATCGAAGCTCAC 57.843 47.619 0.00 0.00 0.00 3.51
502 503 3.492137 CCATCACATCTGATCGAAGCTCA 60.492 47.826 0.00 0.00 34.65 4.26
503 504 3.058450 CCATCACATCTGATCGAAGCTC 58.942 50.000 0.00 0.00 34.65 4.09
504 505 2.806019 GCCATCACATCTGATCGAAGCT 60.806 50.000 0.00 0.00 34.65 3.74
505 506 1.530293 GCCATCACATCTGATCGAAGC 59.470 52.381 0.00 0.00 34.65 3.86
506 507 2.830104 TGCCATCACATCTGATCGAAG 58.170 47.619 0.00 0.00 34.65 3.79
507 508 2.985957 TGCCATCACATCTGATCGAA 57.014 45.000 0.00 0.00 34.65 3.71
508 509 2.985957 TTGCCATCACATCTGATCGA 57.014 45.000 0.00 0.00 34.65 3.59
509 510 2.876550 ACATTGCCATCACATCTGATCG 59.123 45.455 0.00 0.00 34.65 3.69
510 511 3.550233 GCACATTGCCATCACATCTGATC 60.550 47.826 0.00 0.00 37.42 2.92
511 512 2.361119 GCACATTGCCATCACATCTGAT 59.639 45.455 0.00 0.00 37.42 2.90
512 513 1.746787 GCACATTGCCATCACATCTGA 59.253 47.619 0.00 0.00 37.42 3.27
513 514 1.474879 TGCACATTGCCATCACATCTG 59.525 47.619 0.00 0.00 44.23 2.90
514 515 1.475280 GTGCACATTGCCATCACATCT 59.525 47.619 13.17 0.00 44.23 2.90
515 516 1.202817 TGTGCACATTGCCATCACATC 59.797 47.619 17.42 0.00 44.23 3.06
516 517 1.067425 GTGTGCACATTGCCATCACAT 60.067 47.619 24.69 0.00 44.23 3.21
517 518 0.314618 GTGTGCACATTGCCATCACA 59.685 50.000 24.69 0.00 44.23 3.58
518 519 0.314618 TGTGTGCACATTGCCATCAC 59.685 50.000 24.69 7.10 44.23 3.06
519 520 0.314618 GTGTGTGCACATTGCCATCA 59.685 50.000 24.69 11.49 44.23 3.07
520 521 0.730155 CGTGTGTGCACATTGCCATC 60.730 55.000 24.69 8.68 44.23 3.51
521 522 1.286570 CGTGTGTGCACATTGCCAT 59.713 52.632 24.69 0.00 44.23 4.40
522 523 2.720605 CGTGTGTGCACATTGCCA 59.279 55.556 24.69 13.48 44.23 4.92
523 524 2.730604 GCGTGTGTGCACATTGCC 60.731 61.111 24.69 10.68 44.23 4.52
524 525 2.730604 GGCGTGTGTGCACATTGC 60.731 61.111 24.69 24.43 45.50 3.56
525 526 2.050168 GGGCGTGTGTGCACATTG 60.050 61.111 24.69 16.37 45.50 2.82
526 527 2.518112 TGGGCGTGTGTGCACATT 60.518 55.556 24.69 0.00 44.95 2.71
533 534 4.996434 GAGCAGCTGGGCGTGTGT 62.996 66.667 17.12 0.00 39.27 3.72
534 535 3.300934 TAGAGCAGCTGGGCGTGTG 62.301 63.158 17.12 0.00 39.27 3.82
535 536 2.997315 TAGAGCAGCTGGGCGTGT 60.997 61.111 17.12 0.00 39.27 4.49
536 537 2.202851 CTAGAGCAGCTGGGCGTG 60.203 66.667 17.12 0.00 39.27 5.34
537 538 2.363018 TCTAGAGCAGCTGGGCGT 60.363 61.111 17.12 0.00 39.27 5.68
538 539 2.416678 CTCTAGAGCAGCTGGGCG 59.583 66.667 17.12 0.00 39.27 6.13
539 540 1.120795 ATCCTCTAGAGCAGCTGGGC 61.121 60.000 17.12 0.95 0.00 5.36
540 541 1.344114 GAATCCTCTAGAGCAGCTGGG 59.656 57.143 17.12 6.20 0.00 4.45
541 542 2.318908 AGAATCCTCTAGAGCAGCTGG 58.681 52.381 17.12 0.35 0.00 4.85
542 543 4.121317 CAAAGAATCCTCTAGAGCAGCTG 58.879 47.826 14.73 10.11 0.00 4.24
543 544 3.432046 GCAAAGAATCCTCTAGAGCAGCT 60.432 47.826 14.73 0.00 0.00 4.24
544 545 2.871633 GCAAAGAATCCTCTAGAGCAGC 59.128 50.000 14.73 3.41 0.00 5.25
545 546 4.121317 CAGCAAAGAATCCTCTAGAGCAG 58.879 47.826 14.73 1.83 0.00 4.24
546 547 3.681034 GCAGCAAAGAATCCTCTAGAGCA 60.681 47.826 14.73 0.00 0.00 4.26
547 548 2.871633 GCAGCAAAGAATCCTCTAGAGC 59.128 50.000 14.73 0.45 0.00 4.09
548 549 3.870419 GTGCAGCAAAGAATCCTCTAGAG 59.130 47.826 13.18 13.18 0.00 2.43
549 550 3.677148 CGTGCAGCAAAGAATCCTCTAGA 60.677 47.826 0.00 0.00 0.00 2.43
550 551 2.606725 CGTGCAGCAAAGAATCCTCTAG 59.393 50.000 0.00 0.00 0.00 2.43
551 552 2.621338 CGTGCAGCAAAGAATCCTCTA 58.379 47.619 0.00 0.00 0.00 2.43
552 553 1.446907 CGTGCAGCAAAGAATCCTCT 58.553 50.000 0.00 0.00 0.00 3.69
553 554 3.984292 CGTGCAGCAAAGAATCCTC 57.016 52.632 0.00 0.00 0.00 3.71
564 565 4.471726 GATGTGCCTGCGTGCAGC 62.472 66.667 16.26 11.92 43.02 5.25
565 566 3.051479 TGATGTGCCTGCGTGCAG 61.051 61.111 14.82 14.82 43.02 4.41
566 567 3.356267 GTGATGTGCCTGCGTGCA 61.356 61.111 0.00 0.00 39.37 4.57
567 568 3.356267 TGTGATGTGCCTGCGTGC 61.356 61.111 0.00 0.00 0.00 5.34
568 569 2.557805 GTGTGATGTGCCTGCGTG 59.442 61.111 0.00 0.00 0.00 5.34
569 570 1.826340 TAGGTGTGATGTGCCTGCGT 61.826 55.000 0.00 0.00 34.07 5.24
570 571 0.673333 TTAGGTGTGATGTGCCTGCG 60.673 55.000 0.00 0.00 34.07 5.18
571 572 1.533625 TTTAGGTGTGATGTGCCTGC 58.466 50.000 0.00 0.00 34.07 4.85
572 573 3.346315 TGATTTAGGTGTGATGTGCCTG 58.654 45.455 0.00 0.00 34.07 4.85
573 574 3.719268 TGATTTAGGTGTGATGTGCCT 57.281 42.857 0.00 0.00 36.47 4.75
574 575 4.782019 TTTGATTTAGGTGTGATGTGCC 57.218 40.909 0.00 0.00 0.00 5.01
575 576 5.104374 CCATTTGATTTAGGTGTGATGTGC 58.896 41.667 0.00 0.00 0.00 4.57
576 577 5.104374 GCCATTTGATTTAGGTGTGATGTG 58.896 41.667 0.00 0.00 0.00 3.21
577 578 4.142403 CGCCATTTGATTTAGGTGTGATGT 60.142 41.667 0.00 0.00 0.00 3.06
578 579 4.096231 TCGCCATTTGATTTAGGTGTGATG 59.904 41.667 0.00 0.00 33.50 3.07
579 580 4.269183 TCGCCATTTGATTTAGGTGTGAT 58.731 39.130 0.00 0.00 33.50 3.06
580 581 3.680490 TCGCCATTTGATTTAGGTGTGA 58.320 40.909 0.00 0.00 33.50 3.58
581 582 3.181497 CCTCGCCATTTGATTTAGGTGTG 60.181 47.826 0.00 0.00 33.50 3.82
582 583 3.016736 CCTCGCCATTTGATTTAGGTGT 58.983 45.455 0.00 0.00 33.50 4.16
583 584 3.278574 TCCTCGCCATTTGATTTAGGTG 58.721 45.455 0.00 0.00 0.00 4.00
584 585 3.644966 TCCTCGCCATTTGATTTAGGT 57.355 42.857 0.00 0.00 0.00 3.08
585 586 4.580167 TGATTCCTCGCCATTTGATTTAGG 59.420 41.667 0.00 0.00 0.00 2.69
586 587 5.756195 TGATTCCTCGCCATTTGATTTAG 57.244 39.130 0.00 0.00 0.00 1.85
587 588 5.652014 ACTTGATTCCTCGCCATTTGATTTA 59.348 36.000 0.00 0.00 0.00 1.40
588 589 4.463891 ACTTGATTCCTCGCCATTTGATTT 59.536 37.500 0.00 0.00 0.00 2.17
589 590 4.019174 ACTTGATTCCTCGCCATTTGATT 58.981 39.130 0.00 0.00 0.00 2.57
590 591 3.379372 CACTTGATTCCTCGCCATTTGAT 59.621 43.478 0.00 0.00 0.00 2.57
591 592 2.749076 CACTTGATTCCTCGCCATTTGA 59.251 45.455 0.00 0.00 0.00 2.69
592 593 2.159338 CCACTTGATTCCTCGCCATTTG 60.159 50.000 0.00 0.00 0.00 2.32
593 594 2.094675 CCACTTGATTCCTCGCCATTT 58.905 47.619 0.00 0.00 0.00 2.32
594 595 1.004745 ACCACTTGATTCCTCGCCATT 59.995 47.619 0.00 0.00 0.00 3.16
595 596 0.620556 ACCACTTGATTCCTCGCCAT 59.379 50.000 0.00 0.00 0.00 4.40
596 597 0.321564 CACCACTTGATTCCTCGCCA 60.322 55.000 0.00 0.00 0.00 5.69
597 598 0.321653 ACACCACTTGATTCCTCGCC 60.322 55.000 0.00 0.00 0.00 5.54
598 599 1.523758 AACACCACTTGATTCCTCGC 58.476 50.000 0.00 0.00 0.00 5.03
599 600 3.623060 CCATAACACCACTTGATTCCTCG 59.377 47.826 0.00 0.00 0.00 4.63
600 601 3.947834 CCCATAACACCACTTGATTCCTC 59.052 47.826 0.00 0.00 0.00 3.71
601 602 3.591527 TCCCATAACACCACTTGATTCCT 59.408 43.478 0.00 0.00 0.00 3.36
602 603 3.694566 GTCCCATAACACCACTTGATTCC 59.305 47.826 0.00 0.00 0.00 3.01
603 604 3.374058 CGTCCCATAACACCACTTGATTC 59.626 47.826 0.00 0.00 0.00 2.52
610 611 0.107848 CCCTCGTCCCATAACACCAC 60.108 60.000 0.00 0.00 0.00 4.16
631 632 0.983378 TCCTTCCTTCTAGGCCTGCC 60.983 60.000 17.99 0.00 34.61 4.85
632 633 1.135960 ATCCTTCCTTCTAGGCCTGC 58.864 55.000 17.99 0.00 34.61 4.85
633 634 2.103941 GTCATCCTTCCTTCTAGGCCTG 59.896 54.545 17.99 5.60 34.61 4.85
634 635 2.293184 TGTCATCCTTCCTTCTAGGCCT 60.293 50.000 11.78 11.78 34.61 5.19
651 652 3.135712 ACCATGTGTACTCCAAAGTGTCA 59.864 43.478 0.00 0.00 36.92 3.58
659 660 6.515862 GCAAATAAACAACCATGTGTACTCCA 60.516 38.462 0.00 0.00 40.46 3.86
691 692 0.907486 TGCCCTTGAGGATCTCAGTG 59.093 55.000 0.00 0.00 41.75 3.66
706 707 0.965439 ATCGATCAGAGTAGCTGCCC 59.035 55.000 0.00 0.00 44.52 5.36
718 719 5.872617 CAGGTTGTTTACTGGTAATCGATCA 59.127 40.000 0.00 0.00 0.00 2.92
843 853 8.297470 TCATCCTGATTTTGCTAGCTTTAATT 57.703 30.769 17.23 4.38 0.00 1.40
857 867 7.230027 ACTCTCTTCTTGTTTCATCCTGATTT 58.770 34.615 0.00 0.00 0.00 2.17
859 869 6.371595 ACTCTCTTCTTGTTTCATCCTGAT 57.628 37.500 0.00 0.00 0.00 2.90
860 870 5.815233 ACTCTCTTCTTGTTTCATCCTGA 57.185 39.130 0.00 0.00 0.00 3.86
979 995 0.099082 GTCGTCGTGTGAGGAGGATC 59.901 60.000 0.00 0.00 39.51 3.36
991 1007 2.261671 GCTCACCATGGTCGTCGT 59.738 61.111 16.53 0.00 0.00 4.34
992 1008 2.880879 CGCTCACCATGGTCGTCG 60.881 66.667 16.53 14.19 0.00 5.12
993 1009 2.279502 TAGCGCTCACCATGGTCGTC 62.280 60.000 16.34 11.83 0.00 4.20
1152 1168 2.622942 GCAGTTGGTGTTCCTCATGAAA 59.377 45.455 0.00 0.00 33.94 2.69
1214 1230 9.109393 TCTTCCTGAAAATTAATGGATCTTACG 57.891 33.333 0.00 0.00 0.00 3.18
1221 1237 9.142014 TGAACTTTCTTCCTGAAAATTAATGGA 57.858 29.630 0.00 0.00 43.25 3.41
1225 1241 8.420222 TGCATGAACTTTCTTCCTGAAAATTAA 58.580 29.630 0.00 0.00 43.25 1.40
1231 1247 7.394077 TCATTATGCATGAACTTTCTTCCTGAA 59.606 33.333 10.16 0.00 39.11 3.02
1233 1249 7.092137 TCATTATGCATGAACTTTCTTCCTG 57.908 36.000 10.16 0.00 39.11 3.86
1234 1250 6.888632 ACTCATTATGCATGAACTTTCTTCCT 59.111 34.615 10.16 0.00 41.66 3.36
1235 1251 7.093322 ACTCATTATGCATGAACTTTCTTCC 57.907 36.000 10.16 0.00 41.66 3.46
1287 1327 3.639561 TCTTGCCTGCATTGCATTCATAT 59.360 39.130 12.53 0.00 38.13 1.78
1817 1857 4.069232 CGAAGAGCGGGCACTCCA 62.069 66.667 3.41 0.00 37.39 3.86
1868 1908 0.802607 GTCGATGGTCTTCTCGGTGC 60.803 60.000 0.00 0.00 35.64 5.01
2255 2301 1.226802 CACTCGCACTCCTGATCGG 60.227 63.158 0.00 0.00 0.00 4.18
2256 2302 1.226802 CCACTCGCACTCCTGATCG 60.227 63.158 0.00 0.00 0.00 3.69
2257 2303 1.142748 CCCACTCGCACTCCTGATC 59.857 63.158 0.00 0.00 0.00 2.92
2277 2323 1.883084 CCCGAACGCCAGTATGAGC 60.883 63.158 0.00 0.00 39.69 4.26
2361 2407 1.530441 CGCAAGCAATTCATGTCCTCG 60.530 52.381 0.00 0.00 0.00 4.63
2397 2459 1.029681 ACCAAAGAAGGCACGAAACC 58.970 50.000 0.00 0.00 0.00 3.27
2407 2469 0.598065 CGCCCCAGAAACCAAAGAAG 59.402 55.000 0.00 0.00 0.00 2.85
2468 2530 4.347813 TCACTAAAAGCAAACAAACTCGC 58.652 39.130 0.00 0.00 0.00 5.03
2512 2616 4.792068 TCACCAGTTTCAAGAGGAACAAT 58.208 39.130 0.00 0.00 34.56 2.71
2521 2625 7.038154 TCAATAAAACCTCACCAGTTTCAAG 57.962 36.000 0.00 0.00 36.44 3.02
2615 2719 6.267471 GGAGGAGTACATTTCATCAGAGAGAT 59.733 42.308 0.00 0.00 37.48 2.75
2616 2720 5.596361 GGAGGAGTACATTTCATCAGAGAGA 59.404 44.000 0.00 0.00 0.00 3.10
2641 2745 6.594284 AAAAACGCTCTTATATTACGGGAC 57.406 37.500 0.00 0.00 0.00 4.46
2664 2768 9.667107 CCCTTTTTCAATGATCTACTAGTGTAA 57.333 33.333 5.39 0.00 0.00 2.41
2665 2769 7.769044 GCCCTTTTTCAATGATCTACTAGTGTA 59.231 37.037 5.39 0.00 0.00 2.90
2666 2770 6.599638 GCCCTTTTTCAATGATCTACTAGTGT 59.400 38.462 5.39 0.00 0.00 3.55
2667 2771 6.599244 TGCCCTTTTTCAATGATCTACTAGTG 59.401 38.462 5.39 0.00 0.00 2.74
2668 2772 6.599638 GTGCCCTTTTTCAATGATCTACTAGT 59.400 38.462 0.00 0.00 0.00 2.57
2669 2773 6.825721 AGTGCCCTTTTTCAATGATCTACTAG 59.174 38.462 0.00 0.00 0.00 2.57
2670 2774 6.599244 CAGTGCCCTTTTTCAATGATCTACTA 59.401 38.462 0.00 0.00 30.73 1.82
2671 2775 5.416952 CAGTGCCCTTTTTCAATGATCTACT 59.583 40.000 0.00 0.00 30.73 2.57
2672 2776 5.415701 TCAGTGCCCTTTTTCAATGATCTAC 59.584 40.000 0.00 0.00 33.18 2.59
2673 2777 5.569355 TCAGTGCCCTTTTTCAATGATCTA 58.431 37.500 0.00 0.00 33.18 1.98
2674 2778 4.410099 TCAGTGCCCTTTTTCAATGATCT 58.590 39.130 0.00 0.00 33.18 2.75
2679 2783 5.774690 TCATAGTTCAGTGCCCTTTTTCAAT 59.225 36.000 0.00 0.00 0.00 2.57
2685 2789 4.574674 TCATCATAGTTCAGTGCCCTTT 57.425 40.909 0.00 0.00 0.00 3.11
2689 2793 3.521560 TCGTTCATCATAGTTCAGTGCC 58.478 45.455 0.00 0.00 0.00 5.01
2702 2806 8.436200 GCAGTACCTTATATCATTTCGTTCATC 58.564 37.037 0.00 0.00 0.00 2.92
2709 2813 8.894768 ACAAGAGCAGTACCTTATATCATTTC 57.105 34.615 0.00 0.00 0.00 2.17
2717 2821 4.910458 ACCAACAAGAGCAGTACCTTAT 57.090 40.909 0.00 0.00 0.00 1.73
2718 2822 4.699925 AACCAACAAGAGCAGTACCTTA 57.300 40.909 0.00 0.00 0.00 2.69
2752 2856 0.320374 CGCCCTCTGAAACCTACACA 59.680 55.000 0.00 0.00 0.00 3.72
2774 2878 2.782222 CGGGTCGATGATGACGGGT 61.782 63.158 0.00 0.00 39.83 5.28
2801 2905 1.831580 GTCTGCCTGCCTTCTTCATT 58.168 50.000 0.00 0.00 0.00 2.57
2828 2936 3.165160 ATCCGGCGCTGTGGTATCC 62.165 63.158 16.49 0.00 0.00 2.59
2853 2961 3.249559 CAGTGAAGAGTTTGAAGGCTGTC 59.750 47.826 0.00 0.00 0.00 3.51
2871 2979 6.742718 GCAATATAATGCGCTTATTACCAGTG 59.257 38.462 9.73 7.75 36.45 3.66
2900 3008 4.868026 TGGGTCACCAAACACTCG 57.132 55.556 0.00 0.00 45.87 4.18
2912 3020 6.154706 CCCTAGTATATGTGGATAACTGGGTC 59.845 46.154 0.00 0.00 0.00 4.46
2933 3041 4.846367 AGATACATTTCCATGCTAGCCCTA 59.154 41.667 13.29 0.00 33.05 3.53
2934 3042 3.654806 AGATACATTTCCATGCTAGCCCT 59.345 43.478 13.29 0.00 33.05 5.19
2935 3043 4.026356 AGATACATTTCCATGCTAGCCC 57.974 45.455 13.29 0.00 33.05 5.19
2936 3044 5.046304 TCCTAGATACATTTCCATGCTAGCC 60.046 44.000 13.29 0.00 33.05 3.93
2937 3045 6.042638 TCCTAGATACATTTCCATGCTAGC 57.957 41.667 8.10 8.10 33.05 3.42
2938 3046 9.512588 AAAATCCTAGATACATTTCCATGCTAG 57.487 33.333 0.00 0.00 33.05 3.42
2939 3047 9.507329 GAAAATCCTAGATACATTTCCATGCTA 57.493 33.333 0.00 0.00 33.05 3.49
2940 3048 7.449704 GGAAAATCCTAGATACATTTCCATGCT 59.550 37.037 11.69 0.00 43.25 3.79
2941 3049 7.231317 TGGAAAATCCTAGATACATTTCCATGC 59.769 37.037 13.96 0.00 46.42 4.06
2942 3050 8.696043 TGGAAAATCCTAGATACATTTCCATG 57.304 34.615 13.96 0.00 46.42 3.66
2945 3053 9.793259 TGTATGGAAAATCCTAGATACATTTCC 57.207 33.333 10.39 10.39 43.76 3.13
2950 3058 8.597167 CCAGATGTATGGAAAATCCTAGATACA 58.403 37.037 9.27 9.27 43.57 2.29
2951 3059 8.598041 ACCAGATGTATGGAAAATCCTAGATAC 58.402 37.037 0.00 0.00 43.57 2.24
2952 3060 8.742125 ACCAGATGTATGGAAAATCCTAGATA 57.258 34.615 0.00 0.00 43.57 1.98
2953 3061 7.639062 ACCAGATGTATGGAAAATCCTAGAT 57.361 36.000 0.00 0.00 43.57 1.98
2954 3062 7.092444 ACAACCAGATGTATGGAAAATCCTAGA 60.092 37.037 0.00 0.00 43.57 2.43
2955 3063 7.056635 ACAACCAGATGTATGGAAAATCCTAG 58.943 38.462 0.00 0.00 43.57 3.02
2956 3064 6.969043 ACAACCAGATGTATGGAAAATCCTA 58.031 36.000 0.00 0.00 43.57 2.94
2957 3065 5.831103 ACAACCAGATGTATGGAAAATCCT 58.169 37.500 0.00 0.00 43.57 3.24
3093 3270 6.216569 ACTATAGGCACATACGATTTCAGTG 58.783 40.000 4.43 0.00 0.00 3.66
3139 3316 2.693591 TCACCGTAAAGGAGCTCATAGG 59.306 50.000 17.19 12.59 45.00 2.57
3144 3321 2.280628 CCAATCACCGTAAAGGAGCTC 58.719 52.381 4.71 4.71 45.00 4.09
3145 3322 1.065418 CCCAATCACCGTAAAGGAGCT 60.065 52.381 0.00 0.00 45.00 4.09
3146 3323 1.379527 CCCAATCACCGTAAAGGAGC 58.620 55.000 0.00 0.00 45.00 4.70
3147 3324 2.017113 GCCCCAATCACCGTAAAGGAG 61.017 57.143 0.00 0.00 45.00 3.69
3148 3325 0.034863 GCCCCAATCACCGTAAAGGA 60.035 55.000 0.00 0.00 45.00 3.36
3150 3327 1.094785 CTGCCCCAATCACCGTAAAG 58.905 55.000 0.00 0.00 0.00 1.85
3151 3328 0.402504 ACTGCCCCAATCACCGTAAA 59.597 50.000 0.00 0.00 0.00 2.01
3152 3329 1.065998 GTACTGCCCCAATCACCGTAA 60.066 52.381 0.00 0.00 0.00 3.18
3153 3330 0.538118 GTACTGCCCCAATCACCGTA 59.462 55.000 0.00 0.00 0.00 4.02
3154 3331 1.198759 AGTACTGCCCCAATCACCGT 61.199 55.000 0.00 0.00 0.00 4.83
3155 3332 0.744414 CAGTACTGCCCCAATCACCG 60.744 60.000 10.54 0.00 0.00 4.94
3156 3333 0.394352 CCAGTACTGCCCCAATCACC 60.394 60.000 17.86 0.00 0.00 4.02
3157 3334 0.618458 TCCAGTACTGCCCCAATCAC 59.382 55.000 17.86 0.00 0.00 3.06
3158 3335 0.911769 CTCCAGTACTGCCCCAATCA 59.088 55.000 17.86 0.00 0.00 2.57
3159 3336 0.912486 ACTCCAGTACTGCCCCAATC 59.088 55.000 17.86 0.00 0.00 2.67
3160 3337 1.838077 GTACTCCAGTACTGCCCCAAT 59.162 52.381 17.86 1.91 45.47 3.16
3161 3338 1.272807 GTACTCCAGTACTGCCCCAA 58.727 55.000 17.86 0.00 45.47 4.12
3162 3339 2.986492 GTACTCCAGTACTGCCCCA 58.014 57.895 17.86 0.00 45.47 4.96
3178 3355 2.494870 GAGGGGCAAGTACTCGAAAGTA 59.505 50.000 0.00 0.00 36.92 2.24
3179 3356 1.275573 GAGGGGCAAGTACTCGAAAGT 59.724 52.381 0.00 0.00 39.66 2.66
3180 3357 1.405661 GGAGGGGCAAGTACTCGAAAG 60.406 57.143 0.00 0.00 32.11 2.62
3181 3358 0.611714 GGAGGGGCAAGTACTCGAAA 59.388 55.000 0.00 0.00 32.11 3.46
3182 3359 1.601419 CGGAGGGGCAAGTACTCGAA 61.601 60.000 0.00 0.00 32.11 3.71
3183 3360 2.050350 CGGAGGGGCAAGTACTCGA 61.050 63.158 0.00 0.00 32.11 4.04
3184 3361 1.392710 ATCGGAGGGGCAAGTACTCG 61.393 60.000 0.00 0.00 32.11 4.18
3185 3362 0.831307 AATCGGAGGGGCAAGTACTC 59.169 55.000 0.00 0.00 0.00 2.59
3186 3363 1.286248 AAATCGGAGGGGCAAGTACT 58.714 50.000 0.00 0.00 0.00 2.73
3187 3364 2.124277 AAAATCGGAGGGGCAAGTAC 57.876 50.000 0.00 0.00 0.00 2.73
3188 3365 2.891191 AAAAATCGGAGGGGCAAGTA 57.109 45.000 0.00 0.00 0.00 2.24
3189 3366 2.891191 TAAAAATCGGAGGGGCAAGT 57.109 45.000 0.00 0.00 0.00 3.16
3190 3367 4.261614 GCTAATAAAAATCGGAGGGGCAAG 60.262 45.833 0.00 0.00 0.00 4.01
3191 3368 3.634910 GCTAATAAAAATCGGAGGGGCAA 59.365 43.478 0.00 0.00 0.00 4.52
3192 3369 3.219281 GCTAATAAAAATCGGAGGGGCA 58.781 45.455 0.00 0.00 0.00 5.36
3193 3370 2.557056 GGCTAATAAAAATCGGAGGGGC 59.443 50.000 0.00 0.00 0.00 5.80
3194 3371 2.812011 CGGCTAATAAAAATCGGAGGGG 59.188 50.000 0.00 0.00 0.00 4.79
3195 3372 3.473625 ACGGCTAATAAAAATCGGAGGG 58.526 45.455 0.00 0.00 0.00 4.30
3196 3373 3.497262 GGACGGCTAATAAAAATCGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
3197 3374 3.183775 CGGACGGCTAATAAAAATCGGAG 59.816 47.826 0.00 0.00 0.00 4.63
3198 3375 3.125316 CGGACGGCTAATAAAAATCGGA 58.875 45.455 0.00 0.00 0.00 4.55
3199 3376 3.125316 TCGGACGGCTAATAAAAATCGG 58.875 45.455 0.00 0.00 0.00 4.18
3200 3377 4.985044 ATCGGACGGCTAATAAAAATCG 57.015 40.909 0.00 0.00 0.00 3.34
3201 3378 5.912955 CCAAATCGGACGGCTAATAAAAATC 59.087 40.000 0.00 0.00 36.56 2.17
3202 3379 5.358725 ACCAAATCGGACGGCTAATAAAAAT 59.641 36.000 0.00 0.00 38.63 1.82
3203 3380 4.701171 ACCAAATCGGACGGCTAATAAAAA 59.299 37.500 0.00 0.00 38.63 1.94
3204 3381 4.095185 CACCAAATCGGACGGCTAATAAAA 59.905 41.667 0.00 0.00 38.63 1.52
3205 3382 3.623960 CACCAAATCGGACGGCTAATAAA 59.376 43.478 0.00 0.00 38.63 1.40
3206 3383 3.199677 CACCAAATCGGACGGCTAATAA 58.800 45.455 0.00 0.00 38.63 1.40
3207 3384 2.484065 CCACCAAATCGGACGGCTAATA 60.484 50.000 0.00 0.00 38.63 0.98
3208 3385 1.663695 CACCAAATCGGACGGCTAAT 58.336 50.000 0.00 0.00 38.63 1.73
3209 3386 0.391927 CCACCAAATCGGACGGCTAA 60.392 55.000 0.00 0.00 38.63 3.09
3210 3387 1.219664 CCACCAAATCGGACGGCTA 59.780 57.895 0.00 0.00 38.63 3.93
3211 3388 2.046314 CCACCAAATCGGACGGCT 60.046 61.111 0.00 0.00 38.63 5.52
3212 3389 3.131478 CCCACCAAATCGGACGGC 61.131 66.667 0.00 0.00 38.63 5.68
3213 3390 2.437716 CCCCACCAAATCGGACGG 60.438 66.667 0.00 0.00 38.63 4.79
3214 3391 2.437716 CCCCCACCAAATCGGACG 60.438 66.667 0.00 0.00 38.63 4.79
3265 3442 9.420118 AGCACAATATTTTATCCTGAACCATTA 57.580 29.630 0.00 0.00 0.00 1.90
3266 3443 8.310122 AGCACAATATTTTATCCTGAACCATT 57.690 30.769 0.00 0.00 0.00 3.16
3267 3444 7.902920 AGCACAATATTTTATCCTGAACCAT 57.097 32.000 0.00 0.00 0.00 3.55
3268 3445 7.716799 AAGCACAATATTTTATCCTGAACCA 57.283 32.000 0.00 0.00 0.00 3.67
3269 3446 8.250332 TGAAAGCACAATATTTTATCCTGAACC 58.750 33.333 0.00 0.00 0.00 3.62
3270 3447 9.638239 TTGAAAGCACAATATTTTATCCTGAAC 57.362 29.630 0.00 0.00 0.00 3.18
3271 3448 9.638239 GTTGAAAGCACAATATTTTATCCTGAA 57.362 29.630 0.00 0.00 32.36 3.02
3272 3449 8.250332 GGTTGAAAGCACAATATTTTATCCTGA 58.750 33.333 0.00 0.00 32.36 3.86
3273 3450 7.220683 CGGTTGAAAGCACAATATTTTATCCTG 59.779 37.037 0.00 0.00 32.36 3.86
3274 3451 7.122055 TCGGTTGAAAGCACAATATTTTATCCT 59.878 33.333 0.00 0.00 32.36 3.24
3275 3452 7.254852 TCGGTTGAAAGCACAATATTTTATCC 58.745 34.615 0.00 0.00 32.36 2.59
3276 3453 8.856490 ATCGGTTGAAAGCACAATATTTTATC 57.144 30.769 0.00 0.00 32.36 1.75
3277 3454 8.465999 TGATCGGTTGAAAGCACAATATTTTAT 58.534 29.630 0.00 0.00 32.36 1.40
3278 3455 7.821652 TGATCGGTTGAAAGCACAATATTTTA 58.178 30.769 0.00 0.00 32.36 1.52
3279 3456 6.686630 TGATCGGTTGAAAGCACAATATTTT 58.313 32.000 0.00 0.00 32.36 1.82
3280 3457 6.266168 TGATCGGTTGAAAGCACAATATTT 57.734 33.333 0.00 0.00 32.36 1.40
3281 3458 5.895636 TGATCGGTTGAAAGCACAATATT 57.104 34.783 0.00 0.00 32.36 1.28
3282 3459 5.357878 ACATGATCGGTTGAAAGCACAATAT 59.642 36.000 0.00 0.00 32.36 1.28
3283 3460 4.699735 ACATGATCGGTTGAAAGCACAATA 59.300 37.500 0.00 0.00 32.36 1.90
3284 3461 3.507233 ACATGATCGGTTGAAAGCACAAT 59.493 39.130 0.00 0.00 32.36 2.71
3285 3462 2.884012 ACATGATCGGTTGAAAGCACAA 59.116 40.909 0.00 0.00 0.00 3.33
3286 3463 2.483877 GACATGATCGGTTGAAAGCACA 59.516 45.455 0.00 0.00 0.00 4.57
3287 3464 2.159517 GGACATGATCGGTTGAAAGCAC 60.160 50.000 0.00 0.00 0.00 4.40
3288 3465 2.083774 GGACATGATCGGTTGAAAGCA 58.916 47.619 0.00 0.00 0.00 3.91
3289 3466 2.083774 TGGACATGATCGGTTGAAAGC 58.916 47.619 0.00 0.00 0.00 3.51
3290 3467 2.094258 CGTGGACATGATCGGTTGAAAG 59.906 50.000 0.00 0.00 0.00 2.62
3291 3468 2.073056 CGTGGACATGATCGGTTGAAA 58.927 47.619 0.00 0.00 0.00 2.69
3292 3469 1.273886 TCGTGGACATGATCGGTTGAA 59.726 47.619 0.00 0.00 0.00 2.69
3293 3470 0.892063 TCGTGGACATGATCGGTTGA 59.108 50.000 0.00 0.00 0.00 3.18
3294 3471 0.999406 GTCGTGGACATGATCGGTTG 59.001 55.000 0.00 0.00 32.09 3.77
3295 3472 0.108329 GGTCGTGGACATGATCGGTT 60.108 55.000 0.00 0.00 33.68 4.44
3296 3473 1.254975 TGGTCGTGGACATGATCGGT 61.255 55.000 0.00 0.00 33.68 4.69
3297 3474 0.528466 CTGGTCGTGGACATGATCGG 60.528 60.000 0.00 0.00 33.68 4.18
3298 3475 0.455815 TCTGGTCGTGGACATGATCG 59.544 55.000 0.00 0.00 33.68 3.69
3299 3476 2.271800 GTTCTGGTCGTGGACATGATC 58.728 52.381 0.00 0.00 33.68 2.92
3300 3477 1.066143 GGTTCTGGTCGTGGACATGAT 60.066 52.381 0.00 0.00 33.68 2.45
3301 3478 0.320374 GGTTCTGGTCGTGGACATGA 59.680 55.000 0.00 0.00 33.68 3.07
3302 3479 0.034756 TGGTTCTGGTCGTGGACATG 59.965 55.000 0.00 0.00 33.68 3.21
3303 3480 0.034896 GTGGTTCTGGTCGTGGACAT 59.965 55.000 0.00 0.00 33.68 3.06
3304 3481 1.331399 TGTGGTTCTGGTCGTGGACA 61.331 55.000 0.00 0.00 33.68 4.02
3305 3482 0.878961 GTGTGGTTCTGGTCGTGGAC 60.879 60.000 0.00 0.00 0.00 4.02
3306 3483 1.444250 GTGTGGTTCTGGTCGTGGA 59.556 57.895 0.00 0.00 0.00 4.02
3307 3484 1.597027 GGTGTGGTTCTGGTCGTGG 60.597 63.158 0.00 0.00 0.00 4.94
3308 3485 0.677288 TAGGTGTGGTTCTGGTCGTG 59.323 55.000 0.00 0.00 0.00 4.35
3309 3486 0.966920 CTAGGTGTGGTTCTGGTCGT 59.033 55.000 0.00 0.00 0.00 4.34
3310 3487 0.966920 ACTAGGTGTGGTTCTGGTCG 59.033 55.000 0.00 0.00 0.00 4.79
3311 3488 3.428532 TCTACTAGGTGTGGTTCTGGTC 58.571 50.000 0.00 0.00 0.00 4.02
3312 3489 3.537795 TCTACTAGGTGTGGTTCTGGT 57.462 47.619 0.00 0.00 0.00 4.00
3313 3490 4.466370 TCAATCTACTAGGTGTGGTTCTGG 59.534 45.833 0.00 0.00 0.00 3.86
3314 3491 5.661056 TCAATCTACTAGGTGTGGTTCTG 57.339 43.478 0.00 0.00 0.00 3.02
3315 3492 5.364157 GGATCAATCTACTAGGTGTGGTTCT 59.636 44.000 0.00 0.00 0.00 3.01
3316 3493 5.128827 TGGATCAATCTACTAGGTGTGGTTC 59.871 44.000 0.00 0.00 0.00 3.62
3317 3494 5.030147 TGGATCAATCTACTAGGTGTGGTT 58.970 41.667 0.00 0.00 0.00 3.67
3318 3495 4.620723 TGGATCAATCTACTAGGTGTGGT 58.379 43.478 0.00 0.00 0.00 4.16
3319 3496 5.363868 TCTTGGATCAATCTACTAGGTGTGG 59.636 44.000 0.00 0.00 0.00 4.17
3320 3497 6.462207 CCTCTTGGATCAATCTACTAGGTGTG 60.462 46.154 0.00 0.00 34.57 3.82
3321 3498 5.600484 CCTCTTGGATCAATCTACTAGGTGT 59.400 44.000 0.00 0.00 34.57 4.16
3322 3499 5.600484 ACCTCTTGGATCAATCTACTAGGTG 59.400 44.000 7.59 0.00 33.89 4.00
3323 3500 5.782925 ACCTCTTGGATCAATCTACTAGGT 58.217 41.667 0.00 0.00 37.04 3.08
3324 3501 5.835819 TGACCTCTTGGATCAATCTACTAGG 59.164 44.000 0.00 0.00 37.04 3.02
3325 3502 6.968263 TGACCTCTTGGATCAATCTACTAG 57.032 41.667 0.00 0.00 37.04 2.57
3326 3503 6.897966 ACTTGACCTCTTGGATCAATCTACTA 59.102 38.462 0.00 0.00 34.95 1.82
3327 3504 5.723887 ACTTGACCTCTTGGATCAATCTACT 59.276 40.000 0.00 0.00 34.95 2.57
3328 3505 5.983540 ACTTGACCTCTTGGATCAATCTAC 58.016 41.667 0.00 0.00 34.95 2.59
3329 3506 5.129485 GGACTTGACCTCTTGGATCAATCTA 59.871 44.000 0.00 0.00 34.95 1.98
3330 3507 4.080638 GGACTTGACCTCTTGGATCAATCT 60.081 45.833 0.00 0.00 34.95 2.40
3331 3508 4.080638 AGGACTTGACCTCTTGGATCAATC 60.081 45.833 0.00 0.00 34.98 2.67
3332 3509 3.848975 AGGACTTGACCTCTTGGATCAAT 59.151 43.478 0.00 0.00 34.98 2.57
3333 3510 3.251484 AGGACTTGACCTCTTGGATCAA 58.749 45.455 0.00 0.00 34.98 2.57
3334 3511 2.907892 AGGACTTGACCTCTTGGATCA 58.092 47.619 0.00 0.00 34.98 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.