Multiple sequence alignment - TraesCS5D01G003400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G003400 chr5D 100.000 3729 0 0 1 3729 3277929 3274201 0.000000e+00 6887.0
1 TraesCS5D01G003400 chr5D 100.000 2727 0 0 4548 7274 3273382 3270656 0.000000e+00 5036.0
2 TraesCS5D01G003400 chr5D 99.957 2330 1 0 1400 3729 3406967 3409296 0.000000e+00 4298.0
3 TraesCS5D01G003400 chr5D 98.435 1597 24 1 4548 6143 3410013 3411609 0.000000e+00 2809.0
4 TraesCS5D01G003400 chr5D 91.176 646 29 11 1035 1667 197751025 197751655 0.000000e+00 852.0
5 TraesCS5D01G003400 chr5D 93.103 551 24 4 2095 2645 2560050 2560586 0.000000e+00 795.0
6 TraesCS5D01G003400 chr5D 92.480 492 26 5 4548 5038 489085917 489085436 0.000000e+00 693.0
7 TraesCS5D01G003400 chr5D 92.276 492 27 5 4548 5038 41803165 41802684 0.000000e+00 688.0
8 TraesCS5D01G003400 chr5D 87.440 414 24 3 6272 6661 2560961 2561370 1.110000e-122 451.0
9 TraesCS5D01G003400 chr5D 96.311 244 9 0 1676 1919 2559805 2560048 1.140000e-107 401.0
10 TraesCS5D01G003400 chr5D 84.518 394 40 12 381 760 3406023 3406409 3.210000e-98 370.0
11 TraesCS5D01G003400 chr5D 80.761 447 54 24 3012 3447 2561050 2561475 3.270000e-83 320.0
12 TraesCS5D01G003400 chr5D 93.750 208 12 1 2698 2904 2560582 2560789 1.970000e-80 311.0
13 TraesCS5D01G003400 chr5D 91.026 234 11 3 2760 2989 3271789 3271562 2.550000e-79 307.0
14 TraesCS5D01G003400 chr5D 91.026 234 11 3 6141 6368 3275170 3274941 2.550000e-79 307.0
15 TraesCS5D01G003400 chr5D 91.026 234 11 3 6141 6368 3408327 3408556 2.550000e-79 307.0
16 TraesCS5D01G003400 chr5D 87.266 267 28 5 5190 5455 41802616 41802355 4.270000e-77 300.0
17 TraesCS5D01G003400 chr5D 83.165 297 38 11 5204 5496 26515556 26515268 2.010000e-65 261.0
18 TraesCS5D01G003400 chr5D 98.611 144 2 0 6142 6285 2560646 2560789 9.360000e-64 255.0
19 TraesCS5D01G003400 chr5D 98.529 136 2 0 1472 1607 2559386 2559521 2.620000e-59 241.0
20 TraesCS5D01G003400 chr5D 88.095 210 14 3 964 1163 2534296 2534504 9.430000e-59 239.0
21 TraesCS5D01G003400 chr5D 74.542 601 119 30 1730 2316 553772876 553772296 1.580000e-56 231.0
22 TraesCS5D01G003400 chr5D 88.889 171 18 1 6691 6861 2562321 2562490 7.390000e-50 209.0
23 TraesCS5D01G003400 chr5D 89.677 155 8 2 7120 7274 2582158 2582304 2.680000e-44 191.0
24 TraesCS5D01G003400 chr5D 93.103 116 8 0 6859 6974 2562688 2562803 3.490000e-38 171.0
25 TraesCS5D01G003400 chr5D 73.381 556 106 33 1725 2257 553892245 553892781 1.260000e-37 169.0
26 TraesCS5D01G003400 chr5D 85.057 87 11 2 1724 1809 553879857 553879772 3.620000e-13 87.9
27 TraesCS5D01G003400 chr5D 97.959 49 1 0 5119 5167 3272940 3272892 1.300000e-12 86.1
28 TraesCS5D01G003400 chr5D 97.959 49 1 0 5119 5167 3410456 3410504 1.300000e-12 86.1
29 TraesCS5D01G003400 chr5D 97.778 45 1 0 7020 7064 2579799 2579843 2.180000e-10 78.7
30 TraesCS5D01G003400 chr5D 87.879 66 4 2 6999 7064 2582069 2582130 2.810000e-09 75.0
31 TraesCS5D01G003400 chr5A 87.114 1102 103 29 2358 3447 2317238 2316164 0.000000e+00 1212.0
32 TraesCS5D01G003400 chr5A 92.140 687 49 4 1676 2359 2317980 2317296 0.000000e+00 965.0
33 TraesCS5D01G003400 chr5A 97.788 226 5 0 6142 6367 2316835 2316610 2.460000e-104 390.0
34 TraesCS5D01G003400 chr5A 85.161 155 12 4 7120 7274 2314934 2314791 1.640000e-31 148.0
35 TraesCS5D01G003400 chr5B 95.536 672 24 5 1676 2341 5049524 5050195 0.000000e+00 1070.0
36 TraesCS5D01G003400 chr5B 89.517 601 26 15 2461 3030 5050382 5050976 0.000000e+00 726.0
37 TraesCS5D01G003400 chr5B 91.105 371 12 10 920 1271 5045138 5045506 3.950000e-132 483.0
38 TraesCS5D01G003400 chr5B 93.213 221 14 1 6135 6354 5050696 5050916 2.530000e-84 324.0
39 TraesCS5D01G003400 chr5B 89.610 231 12 7 1406 1632 5045571 5045793 4.300000e-72 283.0
40 TraesCS5D01G003400 chr5B 75.042 601 116 32 1730 2316 696586422 696587002 1.570000e-61 248.0
41 TraesCS5D01G003400 chr5B 74.679 624 114 38 1730 2327 697025589 697026194 3.390000e-58 237.0
42 TraesCS5D01G003400 chr5B 72.757 613 132 31 1724 2317 696521558 696520962 2.700000e-39 174.0
43 TraesCS5D01G003400 chr5B 72.471 603 134 26 1728 2316 696730003 696729419 1.620000e-36 165.0
44 TraesCS5D01G003400 chr5B 91.071 112 3 4 260 368 5043174 5043281 2.120000e-30 145.0
45 TraesCS5D01G003400 chr5B 80.412 194 14 10 86 255 5042720 5042913 7.660000e-25 126.0
46 TraesCS5D01G003400 chr5B 82.946 129 17 5 5545 5673 555253196 555253319 2.150000e-20 111.0
47 TraesCS5D01G003400 chr3B 92.598 689 35 6 1676 2358 785502315 785501637 0.000000e+00 976.0
48 TraesCS5D01G003400 chr3B 85.769 780 77 13 2698 3451 785501180 785500409 0.000000e+00 795.0
49 TraesCS5D01G003400 chr3B 90.123 567 29 14 1749 2297 785495514 785494957 0.000000e+00 712.0
50 TraesCS5D01G003400 chr3B 83.647 691 79 20 1676 2341 785516448 785515767 2.880000e-173 619.0
51 TraesCS5D01G003400 chr3B 89.463 503 26 4 2359 2860 785493519 785493043 1.730000e-170 610.0
52 TraesCS5D01G003400 chr3B 94.850 233 10 2 6138 6368 785501121 785500889 5.360000e-96 363.0
53 TraesCS5D01G003400 chr3B 93.333 240 13 3 966 1202 785507527 785507288 1.160000e-92 351.0
54 TraesCS5D01G003400 chr3B 86.068 323 19 15 1350 1662 785517199 785516893 2.530000e-84 324.0
55 TraesCS5D01G003400 chr3B 80.519 462 27 23 1205 1662 785503217 785502815 5.520000e-76 296.0
56 TraesCS5D01G003400 chr3B 89.700 233 18 4 6138 6368 785515379 785515151 7.140000e-75 292.0
57 TraesCS5D01G003400 chr3B 96.599 147 4 1 6220 6365 785492393 785492247 7.290000e-60 243.0
58 TraesCS5D01G003400 chr3B 92.353 170 13 0 6492 6661 785500688 785500519 7.290000e-60 243.0
59 TraesCS5D01G003400 chr3B 86.096 187 23 3 3263 3447 785492036 785491851 1.600000e-46 198.0
60 TraesCS5D01G003400 chr3B 96.040 101 4 0 6141 6241 785493143 785493043 1.620000e-36 165.0
61 TraesCS5D01G003400 chr3B 84.516 155 12 5 7120 7274 785499633 785499491 7.610000e-30 143.0
62 TraesCS5D01G003400 chr3B 76.404 267 26 12 86 340 785508795 785508554 7.720000e-20 110.0
63 TraesCS5D01G003400 chr3B 90.476 84 4 1 6407 6490 785500799 785500720 2.770000e-19 108.0
64 TraesCS5D01G003400 chr3B 91.045 67 6 0 12 78 785508995 785508929 2.790000e-14 91.6
65 TraesCS5D01G003400 chr3B 88.571 70 4 2 6998 7067 785499723 785499658 1.680000e-11 82.4
66 TraesCS5D01G003400 chr6B 90.441 544 42 8 5610 6143 696893718 696894261 0.000000e+00 708.0
67 TraesCS5D01G003400 chr6D 92.886 492 24 5 4548 5038 29373271 29373752 0.000000e+00 704.0
68 TraesCS5D01G003400 chr6D 90.678 472 36 6 5678 6143 458473527 458473996 8.020000e-174 621.0
69 TraesCS5D01G003400 chr6D 88.889 333 19 11 5815 6143 427169068 427168750 1.900000e-105 394.0
70 TraesCS5D01G003400 chr6D 88.782 312 34 1 5187 5498 29373817 29374127 1.480000e-101 381.0
71 TraesCS5D01G003400 chr6D 87.458 295 32 4 5854 6143 445904604 445904310 1.170000e-87 335.0
72 TraesCS5D01G003400 chr6D 82.155 297 41 9 5204 5496 800146 800434 2.030000e-60 244.0
73 TraesCS5D01G003400 chr6D 90.000 170 16 1 3560 3729 427169318 427169150 1.230000e-52 219.0
74 TraesCS5D01G003400 chr6D 80.634 284 45 9 5203 5483 447809064 447809340 2.060000e-50 211.0
75 TraesCS5D01G003400 chr6D 90.769 65 4 2 5119 5182 447808915 447808978 1.300000e-12 86.1
76 TraesCS5D01G003400 chr4D 92.683 492 25 5 4548 5038 504548091 504547610 0.000000e+00 699.0
77 TraesCS5D01G003400 chr4D 89.219 269 27 2 5190 5457 504547542 504547275 1.170000e-87 335.0
78 TraesCS5D01G003400 chr4D 81.019 432 63 17 5721 6143 464233505 464233084 7.040000e-85 326.0
79 TraesCS5D01G003400 chr2D 92.276 492 27 5 4548 5038 44274136 44273655 0.000000e+00 688.0
80 TraesCS5D01G003400 chr2D 92.073 492 28 5 4548 5038 44255649 44255168 0.000000e+00 682.0
81 TraesCS5D01G003400 chr2D 84.015 269 30 4 5190 5457 44255100 44254844 5.640000e-61 246.0
82 TraesCS5D01G003400 chrUn 92.073 492 28 5 4548 5038 254790119 254790600 0.000000e+00 682.0
83 TraesCS5D01G003400 chrUn 92.073 492 28 5 4548 5038 335944652 335944171 0.000000e+00 682.0
84 TraesCS5D01G003400 chr6A 92.565 269 17 2 5875 6140 571879831 571879563 4.120000e-102 383.0
85 TraesCS5D01G003400 chr6A 92.169 166 13 0 3560 3725 571880104 571879939 1.220000e-57 235.0
86 TraesCS5D01G003400 chr2A 87.458 295 31 5 5854 6143 610055165 610055458 1.170000e-87 335.0
87 TraesCS5D01G003400 chr1B 86.689 293 34 4 5855 6143 679724688 679724397 3.270000e-83 320.0
88 TraesCS5D01G003400 chr1B 85.333 75 7 4 3557 3627 679171088 679171162 2.810000e-09 75.0
89 TraesCS5D01G003400 chr1B 85.333 75 7 4 3557 3627 679222293 679222367 2.810000e-09 75.0
90 TraesCS5D01G003400 chr1B 85.333 75 5 6 3559 3627 679246784 679246858 1.010000e-08 73.1
91 TraesCS5D01G003400 chr1A 81.017 295 49 7 5204 5496 582743855 582743566 2.040000e-55 228.0
92 TraesCS5D01G003400 chr4A 74.234 555 102 34 1728 2260 614426517 614425982 2.070000e-45 195.0
93 TraesCS5D01G003400 chr4A 80.000 270 46 7 5203 5469 674920340 674920076 7.450000e-45 193.0
94 TraesCS5D01G003400 chr4A 73.322 611 123 33 1728 2316 614446901 614446309 9.630000e-44 189.0
95 TraesCS5D01G003400 chr4A 85.965 114 15 1 6859 6971 656479743 656479630 3.560000e-23 121.0
96 TraesCS5D01G003400 chr4A 80.952 147 21 5 2731 2874 614425779 614425637 7.720000e-20 110.0
97 TraesCS5D01G003400 chr4A 84.071 113 13 3 6144 6255 614425745 614425637 3.590000e-18 104.0
98 TraesCS5D01G003400 chr4A 83.810 105 10 5 6868 6970 612381460 612381361 7.770000e-15 93.5
99 TraesCS5D01G003400 chr7D 94.845 97 5 0 3563 3659 564570287 564570191 1.260000e-32 152.0
100 TraesCS5D01G003400 chr7A 85.965 114 15 1 6859 6971 47016314 47016201 3.560000e-23 121.0
101 TraesCS5D01G003400 chr7A 84.956 113 13 4 6861 6971 13622782 13622892 2.150000e-20 111.0
102 TraesCS5D01G003400 chr3D 90.769 65 4 2 5119 5182 515282419 515282356 1.300000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G003400 chr5D 3270656 3277929 7273 True 2524.620000 6887 96.002200 1 7274 5 chr5D.!!$R5 7273
1 TraesCS5D01G003400 chr5D 3406023 3411609 5586 False 1574.020000 4298 94.379000 381 6368 5 chr5D.!!$F6 5987
2 TraesCS5D01G003400 chr5D 197751025 197751655 630 False 852.000000 852 91.176000 1035 1667 1 chr5D.!!$F2 632
3 TraesCS5D01G003400 chr5D 41802355 41803165 810 True 494.000000 688 89.771000 4548 5455 2 chr5D.!!$R6 907
4 TraesCS5D01G003400 chr5D 2559386 2562803 3417 False 350.444444 795 92.277444 1472 6974 9 chr5D.!!$F4 5502
5 TraesCS5D01G003400 chr5D 553772296 553772876 580 True 231.000000 231 74.542000 1730 2316 1 chr5D.!!$R3 586
6 TraesCS5D01G003400 chr5A 2314791 2317980 3189 True 678.750000 1212 90.550750 1676 7274 4 chr5A.!!$R1 5598
7 TraesCS5D01G003400 chr5B 5042720 5050976 8256 False 451.000000 1070 90.066286 86 6354 7 chr5B.!!$F4 6268
8 TraesCS5D01G003400 chr5B 696586422 696587002 580 False 248.000000 248 75.042000 1730 2316 1 chr5B.!!$F2 586
9 TraesCS5D01G003400 chr5B 697025589 697026194 605 False 237.000000 237 74.679000 1730 2327 1 chr5B.!!$F3 597
10 TraesCS5D01G003400 chr3B 785515151 785517199 2048 True 411.666667 619 86.471667 1350 6368 3 chr3B.!!$R3 5018
11 TraesCS5D01G003400 chr3B 785491851 785503217 11366 True 379.569231 976 89.844077 1205 7274 13 chr3B.!!$R1 6069
12 TraesCS5D01G003400 chr6B 696893718 696894261 543 False 708.000000 708 90.441000 5610 6143 1 chr6B.!!$F1 533
13 TraesCS5D01G003400 chr6D 29373271 29374127 856 False 542.500000 704 90.834000 4548 5498 2 chr6D.!!$F3 950
14 TraesCS5D01G003400 chr6D 427168750 427169318 568 True 306.500000 394 89.444500 3560 6143 2 chr6D.!!$R2 2583
15 TraesCS5D01G003400 chr4D 504547275 504548091 816 True 517.000000 699 90.951000 4548 5457 2 chr4D.!!$R2 909
16 TraesCS5D01G003400 chr2D 44254844 44255649 805 True 464.000000 682 88.044000 4548 5457 2 chr2D.!!$R2 909
17 TraesCS5D01G003400 chr6A 571879563 571880104 541 True 309.000000 383 92.367000 3560 6140 2 chr6A.!!$R1 2580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.166814 GCTGTGCAGACGGTGATTTC 59.833 55.000 3.02 0.00 0.00 2.17 F
82 83 0.242286 CCGGCTGATCCATAGAGACG 59.758 60.000 0.00 0.00 34.01 4.18 F
903 2366 0.667792 GCCGAGTCGAGAAAGCTTGT 60.668 55.000 15.64 0.00 0.00 3.16 F
1170 2802 1.427020 GCGCATCCTGCAGTTTCTC 59.573 57.895 13.81 0.00 45.36 2.87 F
1402 3042 1.516386 GAGTGAAATCTCGCCGCGA 60.516 57.895 15.90 15.90 32.03 5.87 F
5253 12839 1.722636 GAAGGAGGGCGTCGTACGAT 61.723 60.000 22.57 4.35 46.05 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 2965 3.415212 AGGACACATGTGAGTGGAATTG 58.585 45.455 31.94 1.74 43.72 2.32 R
1399 3039 8.911247 AACCAATGATTAATTCTACTTTTCGC 57.089 30.769 0.00 0.00 0.00 4.70 R
4738 10792 4.020617 CTCGCTGGTGGCCTTGGA 62.021 66.667 3.32 0.00 37.74 3.53 R
5226 12812 2.812619 CGCCCTCCTTCCAGATCCC 61.813 68.421 0.00 0.00 0.00 3.85 R
5309 12895 1.541118 TTGCCTCCTCCCCACATCA 60.541 57.895 0.00 0.00 0.00 3.07 R
6753 20074 0.103937 GGTTCAGATCTGGAGAGGCG 59.896 60.000 22.42 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.061411 CATCCAAGCGTCATGTGCG 59.939 57.895 7.79 7.79 37.44 5.34
19 20 1.079197 ATCCAAGCGTCATGTGCGA 60.079 52.632 14.49 4.54 37.44 5.10
20 21 0.673333 ATCCAAGCGTCATGTGCGAA 60.673 50.000 14.49 1.01 37.44 4.70
21 22 1.154413 CCAAGCGTCATGTGCGAAC 60.154 57.895 14.49 0.00 37.44 3.95
22 23 1.507713 CAAGCGTCATGTGCGAACG 60.508 57.895 14.49 7.87 39.33 3.95
23 24 2.667318 AAGCGTCATGTGCGAACGG 61.667 57.895 14.49 0.00 36.92 4.44
24 25 3.109547 GCGTCATGTGCGAACGGA 61.110 61.111 14.49 0.00 36.92 4.69
25 26 2.452813 GCGTCATGTGCGAACGGAT 61.453 57.895 14.49 0.00 36.92 4.18
26 27 1.631072 CGTCATGTGCGAACGGATC 59.369 57.895 6.59 0.00 32.96 3.36
35 36 2.582498 GAACGGATCGGACGGCTG 60.582 66.667 7.35 0.00 35.23 4.85
36 37 3.352338 GAACGGATCGGACGGCTGT 62.352 63.158 7.35 0.00 35.23 4.40
37 38 3.642778 AACGGATCGGACGGCTGTG 62.643 63.158 0.80 0.00 35.23 3.66
39 40 4.451150 GGATCGGACGGCTGTGCA 62.451 66.667 17.98 4.95 35.97 4.57
40 41 2.887568 GATCGGACGGCTGTGCAG 60.888 66.667 17.98 10.00 35.97 4.41
41 42 3.356639 GATCGGACGGCTGTGCAGA 62.357 63.158 17.98 14.83 35.97 4.26
42 43 3.649277 ATCGGACGGCTGTGCAGAC 62.649 63.158 17.98 0.00 35.97 3.51
48 49 2.046892 GGCTGTGCAGACGGTGAT 60.047 61.111 3.02 0.00 0.00 3.06
49 50 1.672356 GGCTGTGCAGACGGTGATT 60.672 57.895 3.02 0.00 0.00 2.57
50 51 1.237285 GGCTGTGCAGACGGTGATTT 61.237 55.000 3.02 0.00 0.00 2.17
51 52 0.166814 GCTGTGCAGACGGTGATTTC 59.833 55.000 3.02 0.00 0.00 2.17
52 53 1.800805 CTGTGCAGACGGTGATTTCT 58.199 50.000 0.00 0.00 0.00 2.52
53 54 2.930887 GCTGTGCAGACGGTGATTTCTA 60.931 50.000 3.02 0.00 0.00 2.10
54 55 3.325870 CTGTGCAGACGGTGATTTCTAA 58.674 45.455 0.00 0.00 0.00 2.10
55 56 3.325870 TGTGCAGACGGTGATTTCTAAG 58.674 45.455 0.00 0.00 0.00 2.18
56 57 3.006430 TGTGCAGACGGTGATTTCTAAGA 59.994 43.478 0.00 0.00 0.00 2.10
57 58 3.994392 GTGCAGACGGTGATTTCTAAGAA 59.006 43.478 0.00 0.00 0.00 2.52
58 59 4.451096 GTGCAGACGGTGATTTCTAAGAAA 59.549 41.667 0.00 0.00 0.00 2.52
59 60 5.122396 GTGCAGACGGTGATTTCTAAGAAAT 59.878 40.000 0.00 0.00 0.00 2.17
60 61 5.351465 TGCAGACGGTGATTTCTAAGAAATC 59.649 40.000 2.67 2.67 37.21 2.17
61 62 5.351465 GCAGACGGTGATTTCTAAGAAATCA 59.649 40.000 18.46 18.46 42.44 2.57
62 63 6.037610 GCAGACGGTGATTTCTAAGAAATCAT 59.962 38.462 22.17 13.22 45.14 2.45
63 64 7.625553 CAGACGGTGATTTCTAAGAAATCATC 58.374 38.462 22.17 21.09 45.14 2.92
64 65 6.763610 AGACGGTGATTTCTAAGAAATCATCC 59.236 38.462 22.17 21.40 45.14 3.51
65 66 5.978878 CGGTGATTTCTAAGAAATCATCCG 58.021 41.667 27.46 27.46 45.14 4.18
66 67 5.050091 CGGTGATTTCTAAGAAATCATCCGG 60.050 44.000 29.25 21.87 45.14 5.14
67 68 5.278022 GGTGATTTCTAAGAAATCATCCGGC 60.278 44.000 22.17 14.17 45.14 6.13
68 69 5.529060 GTGATTTCTAAGAAATCATCCGGCT 59.471 40.000 22.17 0.00 45.14 5.52
69 70 5.528690 TGATTTCTAAGAAATCATCCGGCTG 59.471 40.000 18.46 0.00 40.53 4.85
70 71 4.753516 TTCTAAGAAATCATCCGGCTGA 57.246 40.909 10.98 10.98 0.00 4.26
71 72 4.963318 TCTAAGAAATCATCCGGCTGAT 57.037 40.909 15.02 15.02 37.47 2.90
72 73 4.887748 TCTAAGAAATCATCCGGCTGATC 58.112 43.478 20.51 10.67 34.79 2.92
73 74 2.557920 AGAAATCATCCGGCTGATCC 57.442 50.000 20.51 14.94 34.79 3.36
74 75 1.770658 AGAAATCATCCGGCTGATCCA 59.229 47.619 20.51 0.00 34.79 3.41
75 76 2.374504 AGAAATCATCCGGCTGATCCAT 59.625 45.455 20.51 10.48 34.79 3.41
76 77 3.584406 AGAAATCATCCGGCTGATCCATA 59.416 43.478 20.51 0.00 34.79 2.74
77 78 3.623906 AATCATCCGGCTGATCCATAG 57.376 47.619 20.51 0.00 34.79 2.23
78 79 2.309136 TCATCCGGCTGATCCATAGA 57.691 50.000 3.28 0.00 34.01 1.98
79 80 2.174360 TCATCCGGCTGATCCATAGAG 58.826 52.381 3.28 0.00 34.01 2.43
80 81 2.174360 CATCCGGCTGATCCATAGAGA 58.826 52.381 0.00 0.00 34.01 3.10
81 82 1.621992 TCCGGCTGATCCATAGAGAC 58.378 55.000 0.00 0.00 34.01 3.36
82 83 0.242286 CCGGCTGATCCATAGAGACG 59.758 60.000 0.00 0.00 34.01 4.18
83 84 0.242286 CGGCTGATCCATAGAGACGG 59.758 60.000 0.00 0.00 34.01 4.79
84 85 1.333177 GGCTGATCCATAGAGACGGT 58.667 55.000 0.00 0.00 34.01 4.83
88 89 3.006323 GCTGATCCATAGAGACGGTGATT 59.994 47.826 0.00 0.00 0.00 2.57
101 102 2.683867 ACGGTGATTCAAACGGAAACAA 59.316 40.909 14.14 0.00 39.60 2.83
102 103 3.242936 ACGGTGATTCAAACGGAAACAAG 60.243 43.478 14.14 0.00 39.60 3.16
106 107 5.099575 GTGATTCAAACGGAAACAAGTGTT 58.900 37.500 0.00 0.00 39.60 3.32
121 122 5.673514 ACAAGTGTTTTTACTCCCGTAGAA 58.326 37.500 0.00 0.00 0.00 2.10
166 171 3.599584 TCCGTCTTGGAGCCTACG 58.400 61.111 0.00 0.00 43.74 3.51
168 173 3.599584 CGTCTTGGAGCCTACGGA 58.400 61.111 0.00 0.00 0.00 4.69
179 187 3.599584 CTACGGAAGGAGGTCGCA 58.400 61.111 0.00 0.00 38.84 5.10
188 196 4.863131 CGGAAGGAGGTCGCATTTATATAC 59.137 45.833 0.00 0.00 0.00 1.47
189 197 5.176592 GGAAGGAGGTCGCATTTATATACC 58.823 45.833 0.00 0.00 0.00 2.73
193 201 7.349412 AGGAGGTCGCATTTATATACCTATC 57.651 40.000 0.00 0.00 40.63 2.08
194 202 6.039493 AGGAGGTCGCATTTATATACCTATCG 59.961 42.308 0.00 0.00 40.63 2.92
195 203 6.039047 GGAGGTCGCATTTATATACCTATCGA 59.961 42.308 0.00 0.00 40.63 3.59
197 205 7.649973 AGGTCGCATTTATATACCTATCGATC 58.350 38.462 0.00 0.00 38.78 3.69
199 207 7.591795 GGTCGCATTTATATACCTATCGATCTG 59.408 40.741 0.00 0.00 0.00 2.90
200 208 8.343366 GTCGCATTTATATACCTATCGATCTGA 58.657 37.037 0.00 0.00 0.00 3.27
209 217 5.207110 ACCTATCGATCTGACTTTCCATG 57.793 43.478 0.00 0.00 0.00 3.66
240 265 5.667539 TCTCACACCTTCCTTCAGATTAG 57.332 43.478 0.00 0.00 0.00 1.73
255 280 5.784177 TCAGATTAGAAAGAAGAACTGCGT 58.216 37.500 0.00 0.00 0.00 5.24
256 281 6.223852 TCAGATTAGAAAGAAGAACTGCGTT 58.776 36.000 0.00 0.00 0.00 4.84
257 282 6.146184 TCAGATTAGAAAGAAGAACTGCGTTG 59.854 38.462 0.00 0.00 0.00 4.10
258 283 4.468095 TTAGAAAGAAGAACTGCGTTGC 57.532 40.909 0.00 0.00 0.00 4.17
272 553 3.251571 TGCGTTGCGTACATACACAATA 58.748 40.909 0.00 0.00 31.82 1.90
273 554 3.866327 TGCGTTGCGTACATACACAATAT 59.134 39.130 0.00 0.00 31.82 1.28
274 555 5.041940 TGCGTTGCGTACATACACAATATA 58.958 37.500 0.00 0.00 31.82 0.86
275 556 5.692654 TGCGTTGCGTACATACACAATATAT 59.307 36.000 0.00 0.00 31.82 0.86
276 557 6.129035 TGCGTTGCGTACATACACAATATATC 60.129 38.462 0.00 0.00 31.82 1.63
277 558 6.447009 CGTTGCGTACATACACAATATATCG 58.553 40.000 0.00 0.00 31.82 2.92
278 559 6.231365 GTTGCGTACATACACAATATATCGC 58.769 40.000 0.00 0.00 40.23 4.58
322 603 1.370172 GCCGCGAGATTCGTCGTAT 60.370 57.895 8.23 0.00 42.81 3.06
334 617 6.097356 AGATTCGTCGTATGTTCTTTTGCTA 58.903 36.000 0.00 0.00 0.00 3.49
368 652 6.870439 GCATGCAGTTTCCTTTTTCTTTCTAT 59.130 34.615 14.21 0.00 0.00 1.98
369 653 8.028938 GCATGCAGTTTCCTTTTTCTTTCTATA 58.971 33.333 14.21 0.00 0.00 1.31
410 759 4.287067 TCTGCCCACTCTTATAATCCATCC 59.713 45.833 0.00 0.00 0.00 3.51
413 762 3.600388 CCACTCTTATAATCCATCCGCC 58.400 50.000 0.00 0.00 0.00 6.13
433 782 2.418334 CCGGGAGTAGTAGGCAGTTTTC 60.418 54.545 0.00 0.00 0.00 2.29
440 789 5.725362 AGTAGTAGGCAGTTTTCATGTCTC 58.275 41.667 0.00 0.00 33.82 3.36
455 806 3.953712 TGTCTCTGGATTGCGAAGTTA 57.046 42.857 0.00 0.00 0.00 2.24
508 866 1.654220 CGGCGCCCCATATTTTCAG 59.346 57.895 23.46 0.00 0.00 3.02
512 870 2.365293 GGCGCCCCATATTTTCAGAAAT 59.635 45.455 18.11 0.00 38.88 2.17
552 910 9.529325 TTAGTCCAGTTCTAACATTATTCGATG 57.471 33.333 0.00 0.00 0.00 3.84
559 918 8.999431 AGTTCTAACATTATTCGATGTGTGTTT 58.001 29.630 10.60 0.00 40.03 2.83
631 995 5.897377 AAAAGTAGATCCATTTTCACCCG 57.103 39.130 0.00 0.00 0.00 5.28
633 997 1.597663 GTAGATCCATTTTCACCCGCG 59.402 52.381 0.00 0.00 0.00 6.46
649 1019 1.850441 CCGCGTATTCGTTTCTGTAGG 59.150 52.381 4.92 0.00 39.49 3.18
656 1026 1.005394 CGTTTCTGTAGGCCACGGT 60.005 57.895 5.01 0.00 34.84 4.83
662 1032 2.183555 GTAGGCCACGGTTCGAGG 59.816 66.667 5.01 0.00 40.38 4.63
672 1042 4.209911 GCCACGGTTCGAGGTATAATTTAC 59.790 45.833 5.76 0.00 39.64 2.01
675 1045 6.480981 CCACGGTTCGAGGTATAATTTACATT 59.519 38.462 0.00 0.00 33.22 2.71
684 1054 7.145474 AGGTATAATTTACATTCCCTCCGTT 57.855 36.000 0.00 0.00 0.00 4.44
687 1057 6.709018 ATAATTTACATTCCCTCCGTTTGG 57.291 37.500 0.00 0.00 0.00 3.28
693 1063 4.270008 ACATTCCCTCCGTTTGGAAATAG 58.730 43.478 0.00 0.00 45.87 1.73
830 1610 9.793252 ACTACTTAAATGATTTAAATGCTGCAG 57.207 29.630 10.11 10.11 34.93 4.41
831 1611 9.793252 CTACTTAAATGATTTAAATGCTGCAGT 57.207 29.630 16.64 1.48 34.93 4.40
869 1814 7.891498 ATGGGGGAGTAATTTGTAATTGTAC 57.109 36.000 0.00 0.00 0.00 2.90
870 1815 5.881443 TGGGGGAGTAATTTGTAATTGTACG 59.119 40.000 0.00 0.00 32.40 3.67
871 1816 5.297527 GGGGGAGTAATTTGTAATTGTACGG 59.702 44.000 0.00 0.00 32.40 4.02
873 1818 6.375174 GGGGAGTAATTTGTAATTGTACGGTT 59.625 38.462 0.00 0.00 32.40 4.44
887 1832 4.462280 GGTTGTACCCCGAGGCCG 62.462 72.222 0.00 0.00 36.11 6.13
888 1833 3.384532 GTTGTACCCCGAGGCCGA 61.385 66.667 0.00 0.00 38.22 5.54
889 1834 3.072468 TTGTACCCCGAGGCCGAG 61.072 66.667 0.00 0.00 38.22 4.63
896 1841 3.132139 CCGAGGCCGAGTCGAGAA 61.132 66.667 15.64 0.00 39.92 2.87
897 1842 2.697761 CCGAGGCCGAGTCGAGAAA 61.698 63.158 15.64 0.00 39.92 2.52
898 1843 1.226435 CGAGGCCGAGTCGAGAAAG 60.226 63.158 15.64 0.00 39.92 2.62
899 1844 1.517475 GAGGCCGAGTCGAGAAAGC 60.517 63.158 15.64 8.20 0.00 3.51
900 1845 1.939769 GAGGCCGAGTCGAGAAAGCT 61.940 60.000 15.64 0.00 0.00 3.74
903 2366 0.667792 GCCGAGTCGAGAAAGCTTGT 60.668 55.000 15.64 0.00 0.00 3.16
906 2369 1.457303 CGAGTCGAGAAAGCTTGTTGG 59.543 52.381 6.73 0.00 0.00 3.77
921 2384 4.679654 GCTTGTTGGAAATAAAAGGTGTCG 59.320 41.667 0.00 0.00 0.00 4.35
922 2385 5.735070 GCTTGTTGGAAATAAAAGGTGTCGT 60.735 40.000 0.00 0.00 0.00 4.34
923 2386 5.427036 TGTTGGAAATAAAAGGTGTCGTC 57.573 39.130 0.00 0.00 0.00 4.20
924 2387 5.127491 TGTTGGAAATAAAAGGTGTCGTCT 58.873 37.500 0.00 0.00 0.00 4.18
925 2388 5.237779 TGTTGGAAATAAAAGGTGTCGTCTC 59.762 40.000 0.00 0.00 0.00 3.36
948 2561 3.589288 CCCCCAAATTCCCCAATTAAACA 59.411 43.478 0.00 0.00 31.51 2.83
962 2575 5.275494 CAATTAAACAAACCCTCGTTCGTT 58.725 37.500 0.00 0.00 30.27 3.85
976 2599 4.099170 CGTTCGTCCGCCGTCTCT 62.099 66.667 0.00 0.00 37.94 3.10
1170 2802 1.427020 GCGCATCCTGCAGTTTCTC 59.573 57.895 13.81 0.00 45.36 2.87
1298 2936 1.683385 GCCATTACCCTGCTTCATTCC 59.317 52.381 0.00 0.00 0.00 3.01
1327 2965 3.773442 CGATTCGATTCGATTCGTTTCC 58.227 45.455 30.36 13.53 46.89 3.13
1401 3041 2.998667 GAGTGAAATCTCGCCGCG 59.001 61.111 6.39 6.39 32.03 6.46
1402 3042 1.516386 GAGTGAAATCTCGCCGCGA 60.516 57.895 15.90 15.90 32.03 5.87
4738 10792 4.335647 CGGCAGGCACCCTTGACT 62.336 66.667 0.00 0.00 44.75 3.41
4765 10819 3.314331 CCAGCGAGGACCACTGGT 61.314 66.667 16.39 0.00 44.91 4.00
5253 12839 1.722636 GAAGGAGGGCGTCGTACGAT 61.723 60.000 22.57 4.35 46.05 3.73
5659 14038 7.786178 TGGAACGAGTGGAATTATATTCTTG 57.214 36.000 0.00 0.00 0.00 3.02
6145 18738 1.697770 GCATGCATGCGTCGTTTTG 59.302 52.632 33.99 3.92 44.67 2.44
6156 18749 1.727857 CGTCGTTTTGTAGGGCATTGC 60.728 52.381 0.00 0.00 0.00 3.56
6256 19521 2.045561 TTTTGCTGGTTCAGACGGAA 57.954 45.000 0.00 0.00 32.44 4.30
6284 19549 5.508224 CGGAGAGTGATTAAAACGCAAAATC 59.492 40.000 0.00 0.00 0.00 2.17
6288 19553 6.797033 AGAGTGATTAAAACGCAAAATCTTCG 59.203 34.615 0.00 0.00 32.12 3.79
6306 19571 1.374758 GAGTGGTTGAGCTCGGTGG 60.375 63.158 9.64 0.00 0.00 4.61
6379 19673 5.294552 AGCTCTTCATGCCGTTCTTAAATAC 59.705 40.000 0.00 0.00 0.00 1.89
6387 19687 6.746745 TGCCGTTCTTAAATACCTTTTAGG 57.253 37.500 0.00 0.00 42.49 2.69
6412 19733 8.912988 GGAGGATATATTTTCAAACATGGACAA 58.087 33.333 0.00 0.00 0.00 3.18
6426 19747 4.039124 ACATGGACAATGAAAGTGAAACCC 59.961 41.667 0.00 0.00 38.72 4.11
6445 19766 6.696441 AACCCGAGTTTTTGTTGTATGTTA 57.304 33.333 0.00 0.00 29.61 2.41
6446 19767 6.887626 ACCCGAGTTTTTGTTGTATGTTAT 57.112 33.333 0.00 0.00 0.00 1.89
6447 19768 7.982761 ACCCGAGTTTTTGTTGTATGTTATA 57.017 32.000 0.00 0.00 0.00 0.98
6448 19769 8.570068 ACCCGAGTTTTTGTTGTATGTTATAT 57.430 30.769 0.00 0.00 0.00 0.86
6481 19802 6.772716 ACGGGATAATGTCATATTTTGCTCTT 59.227 34.615 0.00 0.00 0.00 2.85
6502 19823 7.036996 TCTTGCAACTTGATTATGTTTGTCA 57.963 32.000 0.00 0.00 0.00 3.58
6503 19824 7.140705 TCTTGCAACTTGATTATGTTTGTCAG 58.859 34.615 0.00 0.00 0.00 3.51
6504 19825 6.631971 TGCAACTTGATTATGTTTGTCAGA 57.368 33.333 0.00 0.00 0.00 3.27
6505 19826 7.036996 TGCAACTTGATTATGTTTGTCAGAA 57.963 32.000 0.00 0.00 0.00 3.02
6506 19827 7.487484 TGCAACTTGATTATGTTTGTCAGAAA 58.513 30.769 0.00 0.00 30.90 2.52
6507 19828 8.143193 TGCAACTTGATTATGTTTGTCAGAAAT 58.857 29.630 0.00 0.00 30.90 2.17
6508 19829 8.981647 GCAACTTGATTATGTTTGTCAGAAATT 58.018 29.630 0.00 0.00 30.90 1.82
6519 19840 8.600449 TGTTTGTCAGAAATTTTTCTTTGTGT 57.400 26.923 2.83 0.00 44.70 3.72
6520 19841 9.050601 TGTTTGTCAGAAATTTTTCTTTGTGTT 57.949 25.926 2.83 0.00 44.70 3.32
6521 19842 9.877137 GTTTGTCAGAAATTTTTCTTTGTGTTT 57.123 25.926 2.83 0.00 44.70 2.83
6523 19844 9.487790 TTGTCAGAAATTTTTCTTTGTGTTTCT 57.512 25.926 2.83 0.00 44.70 2.52
6524 19845 9.139174 TGTCAGAAATTTTTCTTTGTGTTTCTC 57.861 29.630 2.83 0.00 44.70 2.87
6525 19846 9.358872 GTCAGAAATTTTTCTTTGTGTTTCTCT 57.641 29.630 2.83 0.00 44.70 3.10
6541 19862 9.996554 TGTGTTTCTCTATGTAATTTCTTGAGA 57.003 29.630 0.00 0.00 0.00 3.27
6556 19877 9.877178 AATTTCTTGAGATACTCGTAATCTTGT 57.123 29.630 0.00 0.00 32.35 3.16
6560 19881 9.047371 TCTTGAGATACTCGTAATCTTGTAGAG 57.953 37.037 0.00 0.00 32.35 2.43
6621 19942 7.859325 TTTAAGAATGCCTATGTTACTCCAC 57.141 36.000 0.00 0.00 0.00 4.02
6624 19945 2.691409 TGCCTATGTTACTCCACTGC 57.309 50.000 0.00 0.00 0.00 4.40
6635 19956 2.576615 ACTCCACTGCAAAAGAAGTCC 58.423 47.619 0.00 0.00 0.00 3.85
6639 19960 4.985538 TCCACTGCAAAAGAAGTCCTAAT 58.014 39.130 0.00 0.00 0.00 1.73
6644 19965 5.827797 ACTGCAAAAGAAGTCCTAATTGTGA 59.172 36.000 0.00 0.00 0.00 3.58
6661 19982 4.908601 TGTGAGTTTACATCATGACCCT 57.091 40.909 0.00 0.00 0.00 4.34
6662 19983 4.832248 TGTGAGTTTACATCATGACCCTC 58.168 43.478 0.00 0.00 0.00 4.30
6663 19984 3.865745 GTGAGTTTACATCATGACCCTCG 59.134 47.826 0.00 0.00 0.00 4.63
6665 19986 2.236146 AGTTTACATCATGACCCTCGCA 59.764 45.455 0.00 0.00 0.00 5.10
6666 19987 3.118261 AGTTTACATCATGACCCTCGCAT 60.118 43.478 0.00 0.00 0.00 4.73
6667 19988 2.531522 TACATCATGACCCTCGCATG 57.468 50.000 0.00 0.00 43.39 4.06
6670 19991 2.031674 ATCATGACCCTCGCATGCGA 62.032 55.000 37.69 37.69 46.87 5.10
6679 20000 1.282875 TCGCATGCGAGATACGAGG 59.717 57.895 37.21 7.14 44.01 4.63
6684 20005 1.269723 CATGCGAGATACGAGGCCTAA 59.730 52.381 4.42 0.00 45.77 2.69
6685 20006 0.666913 TGCGAGATACGAGGCCTAAC 59.333 55.000 4.42 0.00 45.77 2.34
6686 20007 0.666913 GCGAGATACGAGGCCTAACA 59.333 55.000 4.42 0.00 45.77 2.41
6687 20008 1.335142 GCGAGATACGAGGCCTAACAG 60.335 57.143 4.42 0.00 45.77 3.16
6688 20009 1.335142 CGAGATACGAGGCCTAACAGC 60.335 57.143 4.42 0.00 45.77 4.40
6689 20010 0.669077 AGATACGAGGCCTAACAGCG 59.331 55.000 4.42 7.37 0.00 5.18
6690 20011 0.940047 GATACGAGGCCTAACAGCGC 60.940 60.000 4.42 0.00 0.00 5.92
6691 20012 2.365095 ATACGAGGCCTAACAGCGCC 62.365 60.000 4.42 0.00 46.09 6.53
6697 20018 4.530857 CCTAACAGCGCCCCGGAG 62.531 72.222 0.73 0.00 0.00 4.63
6714 20035 3.319198 GCCCTCTCCGACAACCCA 61.319 66.667 0.00 0.00 0.00 4.51
6715 20036 2.890766 GCCCTCTCCGACAACCCAA 61.891 63.158 0.00 0.00 0.00 4.12
6716 20037 1.003718 CCCTCTCCGACAACCCAAC 60.004 63.158 0.00 0.00 0.00 3.77
6717 20038 1.752198 CCTCTCCGACAACCCAACA 59.248 57.895 0.00 0.00 0.00 3.33
6718 20039 0.320771 CCTCTCCGACAACCCAACAG 60.321 60.000 0.00 0.00 0.00 3.16
6719 20040 0.951040 CTCTCCGACAACCCAACAGC 60.951 60.000 0.00 0.00 0.00 4.40
6720 20041 1.071471 CTCCGACAACCCAACAGCT 59.929 57.895 0.00 0.00 0.00 4.24
6721 20042 1.227823 TCCGACAACCCAACAGCTG 60.228 57.895 13.48 13.48 0.00 4.24
6722 20043 2.639286 CGACAACCCAACAGCTGC 59.361 61.111 15.27 0.00 0.00 5.25
6723 20044 2.908073 CGACAACCCAACAGCTGCC 61.908 63.158 15.27 0.00 0.00 4.85
6725 20046 4.347453 CAACCCAACAGCTGCCGC 62.347 66.667 15.27 0.00 0.00 6.53
6742 20063 4.028490 CCACCAGCCTAACCGCCA 62.028 66.667 0.00 0.00 0.00 5.69
6743 20064 2.272146 CACCAGCCTAACCGCCAT 59.728 61.111 0.00 0.00 0.00 4.40
6744 20065 1.378514 CACCAGCCTAACCGCCATT 60.379 57.895 0.00 0.00 0.00 3.16
6745 20066 1.378514 ACCAGCCTAACCGCCATTG 60.379 57.895 0.00 0.00 0.00 2.82
6746 20067 2.120909 CCAGCCTAACCGCCATTGG 61.121 63.158 0.00 0.00 0.00 3.16
6748 20069 1.097547 CAGCCTAACCGCCATTGGAG 61.098 60.000 6.95 2.49 0.00 3.86
6750 20071 1.823899 CCTAACCGCCATTGGAGGC 60.824 63.158 23.83 2.81 46.84 4.70
6765 20086 3.863606 GGCTACGCCTCTCCAGAT 58.136 61.111 0.00 0.00 46.69 2.90
6767 20088 0.825840 GGCTACGCCTCTCCAGATCT 60.826 60.000 0.00 0.00 46.69 2.75
6768 20089 0.313672 GCTACGCCTCTCCAGATCTG 59.686 60.000 16.24 16.24 0.00 2.90
6769 20090 1.974265 CTACGCCTCTCCAGATCTGA 58.026 55.000 24.62 9.26 0.00 3.27
6770 20091 2.302260 CTACGCCTCTCCAGATCTGAA 58.698 52.381 24.62 1.92 0.00 3.02
6771 20092 0.820871 ACGCCTCTCCAGATCTGAAC 59.179 55.000 24.62 5.55 0.00 3.18
6772 20093 0.103937 CGCCTCTCCAGATCTGAACC 59.896 60.000 24.62 5.20 0.00 3.62
6773 20094 0.467804 GCCTCTCCAGATCTGAACCC 59.532 60.000 24.62 3.58 0.00 4.11
6774 20095 0.749649 CCTCTCCAGATCTGAACCCG 59.250 60.000 24.62 6.94 0.00 5.28
6775 20096 0.749649 CTCTCCAGATCTGAACCCGG 59.250 60.000 24.62 6.22 0.00 5.73
6776 20097 0.687757 TCTCCAGATCTGAACCCGGG 60.688 60.000 24.62 22.25 0.00 5.73
6777 20098 1.689233 TCCAGATCTGAACCCGGGG 60.689 63.158 27.92 12.73 0.00 5.73
6778 20099 2.190578 CAGATCTGAACCCGGGGC 59.809 66.667 27.92 17.40 0.00 5.80
6779 20100 2.041265 AGATCTGAACCCGGGGCT 59.959 61.111 27.92 12.02 0.00 5.19
6780 20101 2.066999 AGATCTGAACCCGGGGCTC 61.067 63.158 27.92 21.16 0.00 4.70
6781 20102 2.285368 ATCTGAACCCGGGGCTCA 60.285 61.111 27.92 24.58 0.00 4.26
6782 20103 2.317149 GATCTGAACCCGGGGCTCAG 62.317 65.000 33.76 33.76 0.00 3.35
6783 20104 4.101448 CTGAACCCGGGGCTCAGG 62.101 72.222 32.71 20.66 0.00 3.86
6794 20115 2.045536 GCTCAGGCCAGGACCAAG 60.046 66.667 5.01 0.00 0.00 3.61
6795 20116 2.596851 GCTCAGGCCAGGACCAAGA 61.597 63.158 5.01 0.00 0.00 3.02
6796 20117 2.069776 CTCAGGCCAGGACCAAGAA 58.930 57.895 5.01 0.00 0.00 2.52
6797 20118 0.322008 CTCAGGCCAGGACCAAGAAC 60.322 60.000 5.01 0.00 0.00 3.01
6798 20119 1.303643 CAGGCCAGGACCAAGAACC 60.304 63.158 5.01 0.00 0.00 3.62
6799 20120 2.035783 GGCCAGGACCAAGAACCC 59.964 66.667 0.00 0.00 0.00 4.11
6800 20121 2.840753 GGCCAGGACCAAGAACCCA 61.841 63.158 0.00 0.00 0.00 4.51
6801 20122 1.303643 GCCAGGACCAAGAACCCAG 60.304 63.158 0.00 0.00 0.00 4.45
6802 20123 1.380302 CCAGGACCAAGAACCCAGG 59.620 63.158 0.00 0.00 0.00 4.45
6803 20124 1.380302 CAGGACCAAGAACCCAGGG 59.620 63.158 2.85 2.85 0.00 4.45
6804 20125 2.035783 GGACCAAGAACCCAGGGC 59.964 66.667 4.91 0.00 0.00 5.19
6805 20126 2.840753 GGACCAAGAACCCAGGGCA 61.841 63.158 4.91 0.00 29.65 5.36
6806 20127 1.303643 GACCAAGAACCCAGGGCAG 60.304 63.158 4.91 0.00 0.00 4.85
6807 20128 2.677875 CCAAGAACCCAGGGCAGC 60.678 66.667 4.91 0.00 0.00 5.25
6808 20129 2.115910 CAAGAACCCAGGGCAGCA 59.884 61.111 4.91 0.00 0.00 4.41
6809 20130 2.116125 AAGAACCCAGGGCAGCAC 59.884 61.111 4.91 0.00 0.00 4.40
6810 20131 3.850098 AAGAACCCAGGGCAGCACG 62.850 63.158 4.91 0.00 0.00 5.34
6811 20132 4.643387 GAACCCAGGGCAGCACGT 62.643 66.667 4.91 0.00 0.00 4.49
6812 20133 4.204028 AACCCAGGGCAGCACGTT 62.204 61.111 4.91 0.00 0.00 3.99
6813 20134 4.954970 ACCCAGGGCAGCACGTTG 62.955 66.667 4.91 0.00 0.00 4.10
6824 20145 3.345808 CACGTTGCACCCCACGAG 61.346 66.667 15.09 3.79 0.00 4.18
6825 20146 3.857038 ACGTTGCACCCCACGAGT 61.857 61.111 15.09 0.00 0.00 4.18
6826 20147 3.345808 CGTTGCACCCCACGAGTG 61.346 66.667 2.49 0.00 38.30 3.51
6835 20156 4.361253 CCACGAGTGGGTTGACAG 57.639 61.111 14.19 0.00 46.81 3.51
6836 20157 1.961277 CCACGAGTGGGTTGACAGC 60.961 63.158 14.19 0.00 46.81 4.40
6837 20158 1.961277 CACGAGTGGGTTGACAGCC 60.961 63.158 0.00 0.00 41.49 4.85
6842 20163 4.263572 TGGGTTGACAGCCACCCG 62.264 66.667 10.79 0.00 46.15 5.28
6843 20164 3.948719 GGGTTGACAGCCACCCGA 61.949 66.667 10.79 0.00 40.71 5.14
6844 20165 2.358737 GGTTGACAGCCACCCGAG 60.359 66.667 3.02 0.00 0.00 4.63
6845 20166 2.426023 GTTGACAGCCACCCGAGT 59.574 61.111 0.00 0.00 0.00 4.18
6846 20167 1.668151 GTTGACAGCCACCCGAGTC 60.668 63.158 0.00 0.00 0.00 3.36
6847 20168 3.220999 TTGACAGCCACCCGAGTCG 62.221 63.158 5.29 5.29 33.83 4.18
6850 20171 4.803426 CAGCCACCCGAGTCGCTC 62.803 72.222 7.12 0.00 38.51 5.03
6853 20174 2.439701 CCACCCGAGTCGCTCCTA 60.440 66.667 7.12 0.00 0.00 2.94
6854 20175 2.772691 CCACCCGAGTCGCTCCTAC 61.773 68.421 7.12 0.00 0.00 3.18
6855 20176 2.044555 CACCCGAGTCGCTCCTACA 61.045 63.158 7.12 0.00 0.00 2.74
6856 20177 1.749638 ACCCGAGTCGCTCCTACAG 60.750 63.158 7.12 0.00 0.00 2.74
6857 20178 1.451567 CCCGAGTCGCTCCTACAGA 60.452 63.158 7.12 0.00 0.00 3.41
6858 20179 1.440938 CCCGAGTCGCTCCTACAGAG 61.441 65.000 7.12 0.00 46.29 3.35
6877 20198 7.649533 ACAGAGCATAATTGATTTGATGGAA 57.350 32.000 0.00 0.00 28.80 3.53
6898 20219 2.167281 AGCACATAGTCAGCCACTACAG 59.833 50.000 0.00 0.00 40.60 2.74
6909 20230 2.101582 AGCCACTACAGTCGATCCAATC 59.898 50.000 0.00 0.00 0.00 2.67
6917 20238 7.545965 CACTACAGTCGATCCAATCTTAAACTT 59.454 37.037 0.00 0.00 0.00 2.66
6929 20250 6.636850 CCAATCTTAAACTTGAGTTTGAACCG 59.363 38.462 17.07 0.96 46.56 4.44
6932 20253 5.648960 TCTTAAACTTGAGTTTGAACCGGTT 59.351 36.000 22.50 22.50 46.56 4.44
6937 20258 1.134220 TGAGTTTGAACCGGTTGCTCT 60.134 47.619 27.87 16.67 0.00 4.09
6974 20295 1.050988 TCCATCCCCTGCAGACTAGC 61.051 60.000 17.39 0.00 0.00 3.42
6975 20296 1.340399 CCATCCCCTGCAGACTAGCA 61.340 60.000 17.39 0.00 43.35 3.49
6976 20297 0.543277 CATCCCCTGCAGACTAGCAA 59.457 55.000 17.39 0.00 45.13 3.91
6977 20298 1.065199 CATCCCCTGCAGACTAGCAAA 60.065 52.381 17.39 0.00 45.13 3.68
6978 20299 1.064003 TCCCCTGCAGACTAGCAAAA 58.936 50.000 17.39 0.00 45.13 2.44
6979 20300 1.635487 TCCCCTGCAGACTAGCAAAAT 59.365 47.619 17.39 0.00 45.13 1.82
6980 20301 2.843730 TCCCCTGCAGACTAGCAAAATA 59.156 45.455 17.39 0.00 45.13 1.40
6981 20302 3.459598 TCCCCTGCAGACTAGCAAAATAT 59.540 43.478 17.39 0.00 45.13 1.28
6982 20303 4.658435 TCCCCTGCAGACTAGCAAAATATA 59.342 41.667 17.39 0.00 45.13 0.86
6983 20304 5.310594 TCCCCTGCAGACTAGCAAAATATAT 59.689 40.000 17.39 0.00 45.13 0.86
6984 20305 6.500400 TCCCCTGCAGACTAGCAAAATATATA 59.500 38.462 17.39 0.00 45.13 0.86
6985 20306 6.595716 CCCCTGCAGACTAGCAAAATATATAC 59.404 42.308 17.39 0.00 45.13 1.47
6986 20307 6.311445 CCCTGCAGACTAGCAAAATATATACG 59.689 42.308 17.39 0.00 45.13 3.06
6987 20308 6.311445 CCTGCAGACTAGCAAAATATATACGG 59.689 42.308 17.39 0.00 45.13 4.02
6988 20309 6.163476 TGCAGACTAGCAAAATATATACGGG 58.837 40.000 0.00 0.00 42.46 5.28
6989 20310 6.164176 GCAGACTAGCAAAATATATACGGGT 58.836 40.000 0.00 0.00 0.00 5.28
6990 20311 6.310711 GCAGACTAGCAAAATATATACGGGTC 59.689 42.308 0.00 0.00 0.00 4.46
6991 20312 7.375834 CAGACTAGCAAAATATATACGGGTCA 58.624 38.462 0.00 0.00 0.00 4.02
6992 20313 7.542477 CAGACTAGCAAAATATATACGGGTCAG 59.458 40.741 0.00 0.00 0.00 3.51
6993 20314 7.232941 AGACTAGCAAAATATATACGGGTCAGT 59.767 37.037 0.00 0.00 0.00 3.41
6994 20315 7.376615 ACTAGCAAAATATATACGGGTCAGTC 58.623 38.462 0.00 0.00 0.00 3.51
6995 20316 6.420913 AGCAAAATATATACGGGTCAGTCT 57.579 37.500 0.00 0.00 0.00 3.24
6996 20317 6.456501 AGCAAAATATATACGGGTCAGTCTC 58.543 40.000 0.00 0.00 0.00 3.36
6997 20318 6.267928 AGCAAAATATATACGGGTCAGTCTCT 59.732 38.462 0.00 0.00 0.00 3.10
7006 20327 3.009916 ACGGGTCAGTCTCTAGTTCCTAA 59.990 47.826 0.00 0.00 0.00 2.69
7009 20330 4.202172 GGGTCAGTCTCTAGTTCCTAATGC 60.202 50.000 0.00 0.00 0.00 3.56
7017 20338 7.677745 AGTCTCTAGTTCCTAATGCATCCATAT 59.322 37.037 0.00 0.00 0.00 1.78
7018 20339 8.972127 GTCTCTAGTTCCTAATGCATCCATATA 58.028 37.037 0.00 0.00 0.00 0.86
7019 20340 9.720874 TCTCTAGTTCCTAATGCATCCATATAT 57.279 33.333 0.00 0.00 0.00 0.86
7022 20343 9.684448 CTAGTTCCTAATGCATCCATATATACG 57.316 37.037 0.00 0.00 0.00 3.06
7023 20344 7.500992 AGTTCCTAATGCATCCATATATACGG 58.499 38.462 0.00 0.00 0.00 4.02
7024 20345 6.419484 TCCTAATGCATCCATATATACGGG 57.581 41.667 0.00 0.00 0.00 5.28
7025 20346 5.903010 TCCTAATGCATCCATATATACGGGT 59.097 40.000 0.00 0.00 0.00 5.28
7029 20350 4.093743 TGCATCCATATATACGGGTGAGT 58.906 43.478 12.30 0.00 35.21 3.41
7055 20376 9.519191 TGAAATCAGAAGAGTTGATCCAAAATA 57.481 29.630 0.00 0.00 34.30 1.40
7064 20385 8.059798 AGAGTTGATCCAAAATACAATTCCAG 57.940 34.615 0.00 0.00 32.26 3.86
7067 20388 8.526147 AGTTGATCCAAAATACAATTCCAGAAG 58.474 33.333 0.00 0.00 0.00 2.85
7068 20389 7.408756 TGATCCAAAATACAATTCCAGAAGG 57.591 36.000 0.00 0.00 0.00 3.46
7069 20390 7.181361 TGATCCAAAATACAATTCCAGAAGGA 58.819 34.615 0.00 0.00 43.93 3.36
7078 20399 3.745723 TCCAGAAGGAAACCCAAGC 57.254 52.632 0.00 0.00 42.23 4.01
7079 20400 0.250727 TCCAGAAGGAAACCCAAGCG 60.251 55.000 0.00 0.00 42.23 4.68
7080 20401 0.250727 CCAGAAGGAAACCCAAGCGA 60.251 55.000 0.00 0.00 36.89 4.93
7081 20402 1.604604 CAGAAGGAAACCCAAGCGAA 58.395 50.000 0.00 0.00 0.00 4.70
7082 20403 1.537202 CAGAAGGAAACCCAAGCGAAG 59.463 52.381 0.00 0.00 0.00 3.79
7083 20404 0.881796 GAAGGAAACCCAAGCGAAGG 59.118 55.000 0.00 0.00 0.00 3.46
7084 20405 1.179174 AAGGAAACCCAAGCGAAGGC 61.179 55.000 0.00 0.00 40.37 4.35
7085 20406 1.901464 GGAAACCCAAGCGAAGGCA 60.901 57.895 0.00 0.00 43.41 4.75
7086 20407 1.285950 GAAACCCAAGCGAAGGCAC 59.714 57.895 0.00 0.00 43.41 5.01
7087 20408 1.452145 GAAACCCAAGCGAAGGCACA 61.452 55.000 0.00 0.00 43.41 4.57
7088 20409 1.040339 AAACCCAAGCGAAGGCACAA 61.040 50.000 0.00 0.00 43.41 3.33
7089 20410 1.040339 AACCCAAGCGAAGGCACAAA 61.040 50.000 0.00 0.00 43.41 2.83
7090 20411 1.286880 CCCAAGCGAAGGCACAAAG 59.713 57.895 0.00 0.00 43.41 2.77
7091 20412 1.172180 CCCAAGCGAAGGCACAAAGA 61.172 55.000 0.00 0.00 43.41 2.52
7092 20413 0.040067 CCAAGCGAAGGCACAAAGAC 60.040 55.000 0.00 0.00 43.41 3.01
7093 20414 0.662619 CAAGCGAAGGCACAAAGACA 59.337 50.000 0.00 0.00 43.41 3.41
7099 20420 3.304391 GCGAAGGCACAAAGACAACATTA 60.304 43.478 0.00 0.00 39.62 1.90
7109 20430 8.057742 GCACAAAGACAACATTACATCTTTTTG 58.942 33.333 7.15 7.15 38.93 2.44
7110 20431 8.057742 CACAAAGACAACATTACATCTTTTTGC 58.942 33.333 0.00 0.00 38.93 3.68
7111 20432 7.224557 ACAAAGACAACATTACATCTTTTTGCC 59.775 33.333 0.00 0.00 38.93 4.52
7112 20433 6.403866 AGACAACATTACATCTTTTTGCCA 57.596 33.333 0.00 0.00 0.00 4.92
7113 20434 6.996509 AGACAACATTACATCTTTTTGCCAT 58.003 32.000 0.00 0.00 0.00 4.40
7114 20435 7.092716 AGACAACATTACATCTTTTTGCCATC 58.907 34.615 0.00 0.00 0.00 3.51
7115 20436 6.757237 ACAACATTACATCTTTTTGCCATCA 58.243 32.000 0.00 0.00 0.00 3.07
7116 20437 6.646240 ACAACATTACATCTTTTTGCCATCAC 59.354 34.615 0.00 0.00 0.00 3.06
7117 20438 5.401550 ACATTACATCTTTTTGCCATCACG 58.598 37.500 0.00 0.00 0.00 4.35
7118 20439 5.182950 ACATTACATCTTTTTGCCATCACGA 59.817 36.000 0.00 0.00 0.00 4.35
7128 20449 1.933181 TGCCATCACGAATCACGAATC 59.067 47.619 0.00 0.00 45.77 2.52
7129 20450 1.933181 GCCATCACGAATCACGAATCA 59.067 47.619 0.00 0.00 45.77 2.57
7144 20465 1.940613 GAATCAATAAAGCTCGCCGGT 59.059 47.619 1.90 0.00 0.00 5.28
7149 20470 2.869801 CAATAAAGCTCGCCGGTGATTA 59.130 45.455 19.93 14.69 0.00 1.75
7150 20471 2.902705 TAAAGCTCGCCGGTGATTAT 57.097 45.000 19.93 7.99 0.00 1.28
7151 20472 2.902705 AAAGCTCGCCGGTGATTATA 57.097 45.000 19.93 0.00 0.00 0.98
7152 20473 3.402628 AAAGCTCGCCGGTGATTATAT 57.597 42.857 19.93 1.26 0.00 0.86
7153 20474 3.402628 AAGCTCGCCGGTGATTATATT 57.597 42.857 19.93 6.34 0.00 1.28
7163 20484 5.617751 GCCGGTGATTATATTGATTGCTCAC 60.618 44.000 1.90 0.00 0.00 3.51
7169 20490 6.363357 TGATTATATTGATTGCTCACGACGAG 59.637 38.462 0.00 0.00 45.37 4.18
7171 20492 0.389817 TTGATTGCTCACGACGAGGG 60.390 55.000 0.00 0.00 42.55 4.30
7193 20514 0.183492 TTTCCCTGAGCACTTGCACT 59.817 50.000 3.62 0.00 45.16 4.40
7271 20592 2.046892 CTGAGGCCGTTGTCCCAG 60.047 66.667 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.673333 TTCGCACATGACGCTTGGAT 60.673 50.000 0.00 0.00 0.00 3.41
5 6 2.667318 CCGTTCGCACATGACGCTT 61.667 57.895 0.00 0.00 0.00 4.68
6 7 2.835701 ATCCGTTCGCACATGACGCT 62.836 55.000 0.00 0.00 0.00 5.07
7 8 2.348140 GATCCGTTCGCACATGACGC 62.348 60.000 0.00 0.00 0.00 5.19
8 9 1.631072 GATCCGTTCGCACATGACG 59.369 57.895 0.00 2.72 0.00 4.35
9 10 1.631072 CGATCCGTTCGCACATGAC 59.369 57.895 0.00 0.00 41.69 3.06
10 11 1.518352 CCGATCCGTTCGCACATGA 60.518 57.895 0.00 0.00 46.71 3.07
11 12 1.518352 TCCGATCCGTTCGCACATG 60.518 57.895 0.00 0.00 46.71 3.21
12 13 1.518572 GTCCGATCCGTTCGCACAT 60.519 57.895 0.00 0.00 46.71 3.21
13 14 2.126228 GTCCGATCCGTTCGCACA 60.126 61.111 0.00 0.00 46.71 4.57
14 15 3.245315 CGTCCGATCCGTTCGCAC 61.245 66.667 0.00 0.00 46.71 5.34
15 16 4.485834 CCGTCCGATCCGTTCGCA 62.486 66.667 0.00 0.00 46.71 5.10
18 19 2.582498 CAGCCGTCCGATCCGTTC 60.582 66.667 0.00 0.00 0.00 3.95
19 20 3.379445 ACAGCCGTCCGATCCGTT 61.379 61.111 0.00 0.00 0.00 4.44
20 21 4.129737 CACAGCCGTCCGATCCGT 62.130 66.667 0.00 0.00 0.00 4.69
22 23 4.451150 TGCACAGCCGTCCGATCC 62.451 66.667 0.00 0.00 0.00 3.36
23 24 2.887568 CTGCACAGCCGTCCGATC 60.888 66.667 0.00 0.00 0.00 3.69
24 25 3.381983 TCTGCACAGCCGTCCGAT 61.382 61.111 0.00 0.00 0.00 4.18
25 26 4.357947 GTCTGCACAGCCGTCCGA 62.358 66.667 0.00 0.00 0.00 4.55
28 29 4.664677 ACCGTCTGCACAGCCGTC 62.665 66.667 0.15 0.00 0.00 4.79
29 30 4.969196 CACCGTCTGCACAGCCGT 62.969 66.667 0.15 0.00 0.00 5.68
30 31 3.939837 ATCACCGTCTGCACAGCCG 62.940 63.158 0.00 0.00 0.00 5.52
31 32 1.237285 AAATCACCGTCTGCACAGCC 61.237 55.000 0.00 0.00 0.00 4.85
32 33 0.166814 GAAATCACCGTCTGCACAGC 59.833 55.000 0.00 0.00 0.00 4.40
33 34 1.800805 AGAAATCACCGTCTGCACAG 58.199 50.000 0.00 0.00 0.00 3.66
34 35 3.006430 TCTTAGAAATCACCGTCTGCACA 59.994 43.478 0.00 0.00 0.00 4.57
35 36 3.585862 TCTTAGAAATCACCGTCTGCAC 58.414 45.455 0.00 0.00 0.00 4.57
36 37 3.953712 TCTTAGAAATCACCGTCTGCA 57.046 42.857 0.00 0.00 0.00 4.41
37 38 5.351465 TGATTTCTTAGAAATCACCGTCTGC 59.649 40.000 33.61 15.01 40.53 4.26
38 39 6.968131 TGATTTCTTAGAAATCACCGTCTG 57.032 37.500 33.61 0.00 40.53 3.51
39 40 6.763610 GGATGATTTCTTAGAAATCACCGTCT 59.236 38.462 37.19 26.78 45.86 4.18
40 41 6.292381 CGGATGATTTCTTAGAAATCACCGTC 60.292 42.308 39.29 33.55 45.86 4.79
41 42 5.523916 CGGATGATTTCTTAGAAATCACCGT 59.476 40.000 39.29 30.84 45.86 4.83
42 43 5.050091 CCGGATGATTTCTTAGAAATCACCG 60.050 44.000 39.86 39.86 45.86 4.94
43 44 5.278022 GCCGGATGATTTCTTAGAAATCACC 60.278 44.000 37.19 33.92 45.86 4.02
44 45 5.529060 AGCCGGATGATTTCTTAGAAATCAC 59.471 40.000 37.19 30.26 45.86 3.06
45 46 5.528690 CAGCCGGATGATTTCTTAGAAATCA 59.471 40.000 36.75 36.75 46.71 2.57
46 47 5.760253 TCAGCCGGATGATTTCTTAGAAATC 59.240 40.000 30.20 30.20 37.21 2.17
47 48 5.684704 TCAGCCGGATGATTTCTTAGAAAT 58.315 37.500 20.59 18.79 0.00 2.17
48 49 5.097742 TCAGCCGGATGATTTCTTAGAAA 57.902 39.130 20.59 9.99 0.00 2.52
49 50 4.753516 TCAGCCGGATGATTTCTTAGAA 57.246 40.909 20.59 0.00 0.00 2.10
50 51 4.262635 GGATCAGCCGGATGATTTCTTAGA 60.263 45.833 33.97 5.45 40.02 2.10
51 52 3.999663 GGATCAGCCGGATGATTTCTTAG 59.000 47.826 33.97 0.00 40.02 2.18
52 53 3.390967 TGGATCAGCCGGATGATTTCTTA 59.609 43.478 33.97 16.70 40.02 2.10
53 54 2.173356 TGGATCAGCCGGATGATTTCTT 59.827 45.455 33.97 14.86 40.02 2.52
54 55 1.770658 TGGATCAGCCGGATGATTTCT 59.229 47.619 33.97 15.28 40.02 2.52
55 56 2.260844 TGGATCAGCCGGATGATTTC 57.739 50.000 33.97 27.12 40.02 2.17
56 57 2.965671 ATGGATCAGCCGGATGATTT 57.034 45.000 33.97 19.83 40.02 2.17
57 58 3.176411 TCTATGGATCAGCCGGATGATT 58.824 45.455 33.97 21.70 40.02 2.57
58 59 2.765135 CTCTATGGATCAGCCGGATGAT 59.235 50.000 34.12 34.12 42.62 2.45
59 60 2.174360 CTCTATGGATCAGCCGGATGA 58.826 52.381 26.87 26.87 40.66 2.92
60 61 2.094286 GTCTCTATGGATCAGCCGGATG 60.094 54.545 15.12 15.12 40.66 3.51
61 62 2.175202 GTCTCTATGGATCAGCCGGAT 58.825 52.381 5.05 0.00 40.66 4.18
62 63 1.621992 GTCTCTATGGATCAGCCGGA 58.378 55.000 5.05 0.00 40.66 5.14
63 64 0.242286 CGTCTCTATGGATCAGCCGG 59.758 60.000 0.00 0.00 40.66 6.13
64 65 0.242286 CCGTCTCTATGGATCAGCCG 59.758 60.000 0.00 0.00 40.66 5.52
65 66 1.000283 CACCGTCTCTATGGATCAGCC 60.000 57.143 0.00 0.00 35.54 4.85
66 67 1.957177 TCACCGTCTCTATGGATCAGC 59.043 52.381 0.00 0.00 35.54 4.26
67 68 4.279420 TGAATCACCGTCTCTATGGATCAG 59.721 45.833 0.00 0.00 35.54 2.90
68 69 4.215109 TGAATCACCGTCTCTATGGATCA 58.785 43.478 0.00 0.00 35.54 2.92
69 70 4.855715 TGAATCACCGTCTCTATGGATC 57.144 45.455 0.00 0.00 35.54 3.36
70 71 5.360591 GTTTGAATCACCGTCTCTATGGAT 58.639 41.667 0.00 0.00 35.54 3.41
71 72 4.676986 CGTTTGAATCACCGTCTCTATGGA 60.677 45.833 0.00 0.00 35.54 3.41
72 73 3.551890 CGTTTGAATCACCGTCTCTATGG 59.448 47.826 0.00 0.00 37.83 2.74
73 74 3.551890 CCGTTTGAATCACCGTCTCTATG 59.448 47.826 1.70 0.00 0.00 2.23
74 75 3.446161 TCCGTTTGAATCACCGTCTCTAT 59.554 43.478 1.70 0.00 0.00 1.98
75 76 2.821378 TCCGTTTGAATCACCGTCTCTA 59.179 45.455 1.70 0.00 0.00 2.43
76 77 1.616865 TCCGTTTGAATCACCGTCTCT 59.383 47.619 1.70 0.00 0.00 3.10
77 78 2.074547 TCCGTTTGAATCACCGTCTC 57.925 50.000 1.70 0.00 0.00 3.36
78 79 2.536761 TTCCGTTTGAATCACCGTCT 57.463 45.000 1.70 0.00 0.00 4.18
79 80 2.288458 TGTTTCCGTTTGAATCACCGTC 59.712 45.455 1.70 0.00 31.67 4.79
80 81 2.290464 TGTTTCCGTTTGAATCACCGT 58.710 42.857 1.70 0.00 31.67 4.83
81 82 3.242936 ACTTGTTTCCGTTTGAATCACCG 60.243 43.478 0.00 0.00 33.48 4.94
82 83 4.041723 CACTTGTTTCCGTTTGAATCACC 58.958 43.478 0.00 0.00 33.48 4.02
83 84 4.668289 ACACTTGTTTCCGTTTGAATCAC 58.332 39.130 0.00 0.00 33.48 3.06
84 85 4.974368 ACACTTGTTTCCGTTTGAATCA 57.026 36.364 0.00 0.00 32.21 2.57
88 89 6.679843 AGTAAAAACACTTGTTTCCGTTTGA 58.320 32.000 7.78 0.00 46.47 2.69
101 102 5.761726 CCTTTTCTACGGGAGTAAAAACACT 59.238 40.000 0.00 0.00 46.10 3.55
102 103 5.049198 CCCTTTTCTACGGGAGTAAAAACAC 60.049 44.000 0.00 0.00 46.10 3.32
121 122 2.100631 CGATTCGTGCGCTCCCTTT 61.101 57.895 9.73 0.00 0.00 3.11
166 171 5.046520 AGGTATATAAATGCGACCTCCTTCC 60.047 44.000 0.00 0.00 35.57 3.46
167 172 6.038997 AGGTATATAAATGCGACCTCCTTC 57.961 41.667 0.00 0.00 35.57 3.46
168 173 7.416438 CGATAGGTATATAAATGCGACCTCCTT 60.416 40.741 0.00 0.00 40.92 3.36
175 183 8.343366 GTCAGATCGATAGGTATATAAATGCGA 58.657 37.037 0.00 0.00 0.00 5.10
188 196 4.281941 TCCATGGAAAGTCAGATCGATAGG 59.718 45.833 13.46 0.00 0.00 2.57
189 197 5.242615 TCTCCATGGAAAGTCAGATCGATAG 59.757 44.000 17.00 0.00 0.00 2.08
193 201 3.452474 GTCTCCATGGAAAGTCAGATCG 58.548 50.000 17.00 0.00 0.00 3.69
194 202 3.131223 TCGTCTCCATGGAAAGTCAGATC 59.869 47.826 17.00 3.07 0.00 2.75
195 203 3.099905 TCGTCTCCATGGAAAGTCAGAT 58.900 45.455 17.00 0.00 0.00 2.90
197 205 3.319137 TTCGTCTCCATGGAAAGTCAG 57.681 47.619 17.00 2.72 0.00 3.51
199 207 4.116238 GAGATTCGTCTCCATGGAAAGTC 58.884 47.826 17.00 7.99 0.00 3.01
200 208 3.515502 TGAGATTCGTCTCCATGGAAAGT 59.484 43.478 17.00 0.00 35.97 2.66
203 211 2.831526 TGTGAGATTCGTCTCCATGGAA 59.168 45.455 17.00 0.00 35.97 3.53
205 213 2.544685 GTGTGAGATTCGTCTCCATGG 58.455 52.381 4.97 4.97 35.97 3.66
206 214 2.167281 AGGTGTGAGATTCGTCTCCATG 59.833 50.000 3.24 0.00 35.97 3.66
209 217 2.417515 GGAAGGTGTGAGATTCGTCTCC 60.418 54.545 3.24 0.00 35.97 3.71
256 281 4.555747 CGCGATATATTGTGTATGTACGCA 59.444 41.667 0.00 2.48 44.13 5.24
257 282 4.027945 CCGCGATATATTGTGTATGTACGC 60.028 45.833 8.23 0.00 39.15 4.42
258 283 5.326292 TCCGCGATATATTGTGTATGTACG 58.674 41.667 8.23 0.00 0.00 3.67
272 553 1.068472 GGTCGACTGATTCCGCGATAT 60.068 52.381 16.46 0.00 35.08 1.63
273 554 0.309922 GGTCGACTGATTCCGCGATA 59.690 55.000 16.46 0.00 35.08 2.92
274 555 1.065928 GGTCGACTGATTCCGCGAT 59.934 57.895 16.46 0.00 35.08 4.58
275 556 1.663379 ATGGTCGACTGATTCCGCGA 61.663 55.000 16.46 0.00 0.00 5.87
276 557 1.226974 ATGGTCGACTGATTCCGCG 60.227 57.895 16.46 0.00 0.00 6.46
277 558 1.154205 CCATGGTCGACTGATTCCGC 61.154 60.000 16.46 0.00 0.00 5.54
278 559 1.154205 GCCATGGTCGACTGATTCCG 61.154 60.000 16.46 0.00 0.00 4.30
322 603 2.875933 CGGTTGGAGTAGCAAAAGAACA 59.124 45.455 0.00 0.00 0.00 3.18
334 617 2.431683 ACTGCATGCGGTTGGAGT 59.568 55.556 26.61 13.22 42.63 3.85
368 652 9.856162 TGGGCAGAGTTCGTGTATATATATATA 57.144 33.333 8.16 8.16 0.00 0.86
369 653 8.630917 GTGGGCAGAGTTCGTGTATATATATAT 58.369 37.037 10.10 10.10 0.00 0.86
370 654 7.832685 AGTGGGCAGAGTTCGTGTATATATATA 59.167 37.037 0.00 0.00 0.00 0.86
371 655 6.663953 AGTGGGCAGAGTTCGTGTATATATAT 59.336 38.462 0.00 0.00 0.00 0.86
372 656 6.008331 AGTGGGCAGAGTTCGTGTATATATA 58.992 40.000 0.00 0.00 0.00 0.86
373 657 4.833380 AGTGGGCAGAGTTCGTGTATATAT 59.167 41.667 0.00 0.00 0.00 0.86
374 658 4.212716 AGTGGGCAGAGTTCGTGTATATA 58.787 43.478 0.00 0.00 0.00 0.86
375 659 3.031736 AGTGGGCAGAGTTCGTGTATAT 58.968 45.455 0.00 0.00 0.00 0.86
376 660 2.426024 GAGTGGGCAGAGTTCGTGTATA 59.574 50.000 0.00 0.00 0.00 1.47
377 661 1.204941 GAGTGGGCAGAGTTCGTGTAT 59.795 52.381 0.00 0.00 0.00 2.29
378 662 0.601558 GAGTGGGCAGAGTTCGTGTA 59.398 55.000 0.00 0.00 0.00 2.90
379 663 1.115930 AGAGTGGGCAGAGTTCGTGT 61.116 55.000 0.00 0.00 0.00 4.49
383 667 5.163301 TGGATTATAAGAGTGGGCAGAGTTC 60.163 44.000 0.00 0.00 0.00 3.01
410 759 2.831742 TGCCTACTACTCCCGGCG 60.832 66.667 0.00 0.00 45.36 6.46
413 762 2.232941 TGAAAACTGCCTACTACTCCCG 59.767 50.000 0.00 0.00 0.00 5.14
419 768 5.337571 CCAGAGACATGAAAACTGCCTACTA 60.338 44.000 0.00 0.00 0.00 1.82
433 782 2.625737 ACTTCGCAATCCAGAGACATG 58.374 47.619 0.00 0.00 0.00 3.21
440 789 2.691409 TCCCTAACTTCGCAATCCAG 57.309 50.000 0.00 0.00 0.00 3.86
455 806 1.628846 AGAAACCGCACTTGTATCCCT 59.371 47.619 0.00 0.00 0.00 4.20
486 841 2.559922 AAAATATGGGGCGCCGGTCA 62.560 55.000 22.54 18.77 0.00 4.02
487 842 1.792118 GAAAATATGGGGCGCCGGTC 61.792 60.000 22.54 13.24 0.00 4.79
488 843 1.826487 GAAAATATGGGGCGCCGGT 60.826 57.895 22.54 11.36 0.00 5.28
490 845 0.817634 TCTGAAAATATGGGGCGCCG 60.818 55.000 22.54 1.14 0.00 6.46
491 846 1.398692 TTCTGAAAATATGGGGCGCC 58.601 50.000 21.18 21.18 0.00 6.53
533 891 8.547967 AACACACATCGAATAATGTTAGAACT 57.452 30.769 6.68 0.00 37.78 3.01
631 995 1.591619 GGCCTACAGAAACGAATACGC 59.408 52.381 0.00 0.00 43.96 4.42
633 997 2.601763 CGTGGCCTACAGAAACGAATAC 59.398 50.000 3.32 0.00 36.38 1.89
649 1019 2.521105 ATTATACCTCGAACCGTGGC 57.479 50.000 7.29 0.00 43.18 5.01
656 1026 7.447594 GGAGGGAATGTAAATTATACCTCGAA 58.552 38.462 13.39 0.00 43.14 3.71
662 1032 7.499895 TCCAAACGGAGGGAATGTAAATTATAC 59.500 37.037 0.00 0.00 0.00 1.47
672 1042 3.632145 CCTATTTCCAAACGGAGGGAATG 59.368 47.826 6.78 1.70 42.44 2.67
675 1045 2.271777 ACCTATTTCCAAACGGAGGGA 58.728 47.619 0.00 0.00 32.88 4.20
727 1105 4.286291 ACTCCCTCCGTTCAGAAATAAGTT 59.714 41.667 0.00 0.00 0.00 2.66
841 1621 9.500701 ACAATTACAAATTACTCCCCCATAAAT 57.499 29.630 0.00 0.00 0.00 1.40
870 1815 4.462280 CGGCCTCGGGGTACAACC 62.462 72.222 1.62 0.00 37.60 3.77
871 1816 3.366739 CTCGGCCTCGGGGTACAAC 62.367 68.421 1.62 0.00 36.95 3.32
873 1818 4.371417 ACTCGGCCTCGGGGTACA 62.371 66.667 1.62 0.00 42.10 2.90
880 1825 1.226435 CTTTCTCGACTCGGCCTCG 60.226 63.158 6.54 6.54 37.82 4.63
882 1827 1.536943 AAGCTTTCTCGACTCGGCCT 61.537 55.000 0.00 0.00 0.00 5.19
884 1829 0.667792 ACAAGCTTTCTCGACTCGGC 60.668 55.000 0.00 0.00 0.00 5.54
885 1830 1.457303 CAACAAGCTTTCTCGACTCGG 59.543 52.381 0.00 0.00 0.00 4.63
887 1832 2.755650 TCCAACAAGCTTTCTCGACTC 58.244 47.619 0.00 0.00 0.00 3.36
888 1833 2.910688 TCCAACAAGCTTTCTCGACT 57.089 45.000 0.00 0.00 0.00 4.18
889 1834 3.963383 TTTCCAACAAGCTTTCTCGAC 57.037 42.857 0.00 0.00 0.00 4.20
892 1837 7.169813 CACCTTTTATTTCCAACAAGCTTTCTC 59.830 37.037 0.00 0.00 0.00 2.87
894 1839 6.761242 ACACCTTTTATTTCCAACAAGCTTTC 59.239 34.615 0.00 0.00 0.00 2.62
895 1840 6.649155 ACACCTTTTATTTCCAACAAGCTTT 58.351 32.000 0.00 0.00 0.00 3.51
896 1841 6.233905 ACACCTTTTATTTCCAACAAGCTT 57.766 33.333 0.00 0.00 0.00 3.74
897 1842 5.507315 CGACACCTTTTATTTCCAACAAGCT 60.507 40.000 0.00 0.00 0.00 3.74
898 1843 4.679654 CGACACCTTTTATTTCCAACAAGC 59.320 41.667 0.00 0.00 0.00 4.01
899 1844 5.827666 ACGACACCTTTTATTTCCAACAAG 58.172 37.500 0.00 0.00 0.00 3.16
900 1845 5.591067 AGACGACACCTTTTATTTCCAACAA 59.409 36.000 0.00 0.00 0.00 2.83
903 2366 4.758165 GGAGACGACACCTTTTATTTCCAA 59.242 41.667 0.00 0.00 0.00 3.53
906 2369 3.688185 GGGGAGACGACACCTTTTATTTC 59.312 47.826 1.23 0.00 0.00 2.17
948 2561 0.598419 GGACGAACGAACGAGGGTTT 60.598 55.000 11.97 0.00 36.24 3.27
997 2620 1.906824 AGTCGTCCACGGACATGGT 60.907 57.895 16.23 0.00 44.77 3.55
1327 2965 3.415212 AGGACACATGTGAGTGGAATTG 58.585 45.455 31.94 1.74 43.72 2.32
1399 3039 8.911247 AACCAATGATTAATTCTACTTTTCGC 57.089 30.769 0.00 0.00 0.00 4.70
4738 10792 4.020617 CTCGCTGGTGGCCTTGGA 62.021 66.667 3.32 0.00 37.74 3.53
5226 12812 2.812619 CGCCCTCCTTCCAGATCCC 61.813 68.421 0.00 0.00 0.00 3.85
5309 12895 1.541118 TTGCCTCCTCCCCACATCA 60.541 57.895 0.00 0.00 0.00 3.07
5346 12932 4.451150 GGCAGGATCCGTCACGCA 62.451 66.667 5.98 0.00 0.00 5.24
5659 14038 9.678941 CTTAAGTTTAAGGTTTCACTCATTTCC 57.321 33.333 4.13 0.00 37.16 3.13
5770 16421 6.219302 TCTATTTCACTCGTTTCGGAAAAC 57.781 37.500 4.46 0.00 41.16 2.43
6002 18168 2.665165 TGAATTTGTGGTGACAAGGCT 58.335 42.857 0.00 0.00 46.06 4.58
6145 18738 1.146263 AGCCGTAGCAATGCCCTAC 59.854 57.895 0.00 0.00 43.56 3.18
6156 18749 2.125512 AAGCCTTCGCAGCCGTAG 60.126 61.111 0.00 0.00 37.52 3.51
6256 19521 3.512680 CGTTTTAATCACTCTCCGAGCT 58.487 45.455 0.00 0.00 32.04 4.09
6288 19553 1.374758 CCACCGAGCTCAACCACTC 60.375 63.158 15.40 0.00 0.00 3.51
6306 19571 1.081094 GCATGCAAGCCAAATCCAAC 58.919 50.000 14.21 0.00 0.00 3.77
6402 19702 5.453198 GGGTTTCACTTTCATTGTCCATGTT 60.453 40.000 0.00 0.00 34.06 2.71
6403 19703 4.039124 GGGTTTCACTTTCATTGTCCATGT 59.961 41.667 0.00 0.00 34.06 3.21
6404 19704 4.559153 GGGTTTCACTTTCATTGTCCATG 58.441 43.478 0.00 0.00 0.00 3.66
6412 19733 5.105513 ACAAAAACTCGGGTTTCACTTTCAT 60.106 36.000 15.01 0.00 43.90 2.57
6413 19734 4.218852 ACAAAAACTCGGGTTTCACTTTCA 59.781 37.500 15.01 0.00 43.90 2.69
6481 19802 6.631971 TCTGACAAACATAATCAAGTTGCA 57.368 33.333 0.00 0.00 0.00 4.08
6495 19816 9.877137 AAACACAAAGAAAAATTTCTGACAAAC 57.123 25.926 9.05 0.00 46.22 2.93
6498 19819 9.139174 GAGAAACACAAAGAAAAATTTCTGACA 57.861 29.630 9.05 0.00 46.22 3.58
6515 19836 9.996554 TCTCAAGAAATTACATAGAGAAACACA 57.003 29.630 0.00 0.00 0.00 3.72
6530 19851 9.877178 ACAAGATTACGAGTATCTCAAGAAATT 57.123 29.630 0.00 0.00 0.00 1.82
6533 19854 9.392259 TCTACAAGATTACGAGTATCTCAAGAA 57.608 33.333 0.00 0.00 0.00 2.52
6534 19855 8.959705 TCTACAAGATTACGAGTATCTCAAGA 57.040 34.615 0.00 0.00 0.00 3.02
6535 19856 8.832521 ACTCTACAAGATTACGAGTATCTCAAG 58.167 37.037 0.00 0.00 33.53 3.02
6536 19857 8.734218 ACTCTACAAGATTACGAGTATCTCAA 57.266 34.615 0.00 0.00 33.53 3.02
6537 19858 8.734218 AACTCTACAAGATTACGAGTATCTCA 57.266 34.615 0.00 0.00 34.13 3.27
6609 19930 6.296026 ACTTCTTTTGCAGTGGAGTAACATA 58.704 36.000 0.00 0.00 0.00 2.29
6621 19942 6.016777 ACTCACAATTAGGACTTCTTTTGCAG 60.017 38.462 0.00 0.00 0.00 4.41
6624 19945 9.665264 GTAAACTCACAATTAGGACTTCTTTTG 57.335 33.333 0.00 0.00 0.00 2.44
6635 19956 7.554118 AGGGTCATGATGTAAACTCACAATTAG 59.446 37.037 0.00 0.00 30.84 1.73
6639 19960 5.241403 AGGGTCATGATGTAAACTCACAA 57.759 39.130 0.00 0.00 30.84 3.33
6644 19965 2.236146 TGCGAGGGTCATGATGTAAACT 59.764 45.455 0.00 0.00 0.00 2.66
6661 19982 1.282875 CCTCGTATCTCGCATGCGA 59.717 57.895 37.69 37.69 46.87 5.10
6662 19983 2.368105 GCCTCGTATCTCGCATGCG 61.368 63.158 33.61 33.61 39.67 4.73
6663 19984 2.024319 GGCCTCGTATCTCGCATGC 61.024 63.158 7.91 7.91 39.67 4.06
6665 19986 1.269998 GTTAGGCCTCGTATCTCGCAT 59.730 52.381 9.68 0.00 39.67 4.73
6666 19987 0.666913 GTTAGGCCTCGTATCTCGCA 59.333 55.000 9.68 0.00 39.67 5.10
6667 19988 0.666913 TGTTAGGCCTCGTATCTCGC 59.333 55.000 9.68 0.00 39.67 5.03
6670 19991 0.669077 CGCTGTTAGGCCTCGTATCT 59.331 55.000 9.68 0.00 0.00 1.98
6672 19993 1.067582 GCGCTGTTAGGCCTCGTAT 59.932 57.895 9.68 0.00 0.00 3.06
6673 19994 2.493030 GCGCTGTTAGGCCTCGTA 59.507 61.111 9.68 0.00 0.00 3.43
6674 19995 4.452733 GGCGCTGTTAGGCCTCGT 62.453 66.667 9.68 0.00 45.93 4.18
6696 20017 3.003763 GGGTTGTCGGAGAGGGCT 61.004 66.667 0.00 0.00 36.95 5.19
6697 20018 2.890766 TTGGGTTGTCGGAGAGGGC 61.891 63.158 0.00 0.00 36.95 5.19
6698 20019 1.003718 GTTGGGTTGTCGGAGAGGG 60.004 63.158 0.00 0.00 36.95 4.30
6699 20020 0.320771 CTGTTGGGTTGTCGGAGAGG 60.321 60.000 0.00 0.00 36.95 3.69
6700 20021 0.951040 GCTGTTGGGTTGTCGGAGAG 60.951 60.000 0.00 0.00 36.95 3.20
6701 20022 1.070786 GCTGTTGGGTTGTCGGAGA 59.929 57.895 0.00 0.00 0.00 3.71
6702 20023 1.071471 AGCTGTTGGGTTGTCGGAG 59.929 57.895 0.00 0.00 0.00 4.63
6703 20024 1.227823 CAGCTGTTGGGTTGTCGGA 60.228 57.895 5.25 0.00 0.00 4.55
6704 20025 2.908073 GCAGCTGTTGGGTTGTCGG 61.908 63.158 16.64 0.00 0.00 4.79
6705 20026 2.639286 GCAGCTGTTGGGTTGTCG 59.361 61.111 16.64 0.00 0.00 4.35
6706 20027 2.908073 CGGCAGCTGTTGGGTTGTC 61.908 63.158 16.64 0.00 0.00 3.18
6707 20028 2.906897 CGGCAGCTGTTGGGTTGT 60.907 61.111 16.64 0.00 0.00 3.32
6708 20029 4.347453 GCGGCAGCTGTTGGGTTG 62.347 66.667 16.64 0.00 41.01 3.77
6719 20040 4.408821 TTAGGCTGGTGGCGGCAG 62.409 66.667 13.91 1.15 44.18 4.85
6720 20041 4.715523 GTTAGGCTGGTGGCGGCA 62.716 66.667 7.97 7.97 44.18 5.69
6725 20046 2.837031 AATGGCGGTTAGGCTGGTGG 62.837 60.000 0.00 0.00 46.88 4.61
6726 20047 1.378514 AATGGCGGTTAGGCTGGTG 60.379 57.895 0.00 0.00 46.88 4.17
6727 20048 1.378514 CAATGGCGGTTAGGCTGGT 60.379 57.895 0.00 0.00 46.88 4.00
6728 20049 2.120909 CCAATGGCGGTTAGGCTGG 61.121 63.158 0.00 0.00 46.88 4.85
6729 20050 1.077787 TCCAATGGCGGTTAGGCTG 60.078 57.895 0.00 0.00 46.88 4.85
6731 20052 1.823899 CCTCCAATGGCGGTTAGGC 60.824 63.158 0.00 0.00 46.95 3.93
6732 20053 1.823899 GCCTCCAATGGCGGTTAGG 60.824 63.158 10.34 4.89 43.74 2.69
6733 20054 3.827634 GCCTCCAATGGCGGTTAG 58.172 61.111 10.34 0.00 43.74 2.34
6750 20071 1.974265 TCAGATCTGGAGAGGCGTAG 58.026 55.000 22.42 0.00 0.00 3.51
6751 20072 2.025155 GTTCAGATCTGGAGAGGCGTA 58.975 52.381 22.42 0.00 0.00 4.42
6752 20073 0.820871 GTTCAGATCTGGAGAGGCGT 59.179 55.000 22.42 0.00 0.00 5.68
6753 20074 0.103937 GGTTCAGATCTGGAGAGGCG 59.896 60.000 22.42 0.00 0.00 5.52
6754 20075 0.467804 GGGTTCAGATCTGGAGAGGC 59.532 60.000 22.42 1.74 0.00 4.70
6755 20076 0.749649 CGGGTTCAGATCTGGAGAGG 59.250 60.000 22.42 6.28 0.00 3.69
6756 20077 0.749649 CCGGGTTCAGATCTGGAGAG 59.250 60.000 22.42 7.96 0.00 3.20
6757 20078 0.687757 CCCGGGTTCAGATCTGGAGA 60.688 60.000 22.42 6.57 0.00 3.71
6758 20079 1.690219 CCCCGGGTTCAGATCTGGAG 61.690 65.000 21.85 9.32 0.00 3.86
6760 20081 2.911143 CCCCGGGTTCAGATCTGG 59.089 66.667 21.85 5.21 0.00 3.86
6761 20082 2.190578 GCCCCGGGTTCAGATCTG 59.809 66.667 21.85 17.07 0.00 2.90
6762 20083 2.041265 AGCCCCGGGTTCAGATCT 59.959 61.111 21.85 1.36 0.00 2.75
6763 20084 2.367202 TGAGCCCCGGGTTCAGATC 61.367 63.158 21.85 12.94 37.99 2.75
6764 20085 2.285368 TGAGCCCCGGGTTCAGAT 60.285 61.111 21.85 1.23 37.99 2.90
6777 20098 2.045536 CTTGGTCCTGGCCTGAGC 60.046 66.667 11.88 14.01 38.76 4.26
6778 20099 0.322008 GTTCTTGGTCCTGGCCTGAG 60.322 60.000 11.88 0.00 0.00 3.35
6779 20100 1.761174 GTTCTTGGTCCTGGCCTGA 59.239 57.895 11.88 0.66 0.00 3.86
6780 20101 1.303643 GGTTCTTGGTCCTGGCCTG 60.304 63.158 3.32 2.54 0.00 4.85
6781 20102 2.539081 GGGTTCTTGGTCCTGGCCT 61.539 63.158 3.32 0.00 0.00 5.19
6782 20103 2.035783 GGGTTCTTGGTCCTGGCC 59.964 66.667 0.00 0.00 0.00 5.36
6783 20104 1.303643 CTGGGTTCTTGGTCCTGGC 60.304 63.158 0.00 0.00 0.00 4.85
6784 20105 1.380302 CCTGGGTTCTTGGTCCTGG 59.620 63.158 0.00 0.00 34.23 4.45
6785 20106 1.380302 CCCTGGGTTCTTGGTCCTG 59.620 63.158 3.97 0.00 0.00 3.86
6786 20107 2.539081 GCCCTGGGTTCTTGGTCCT 61.539 63.158 15.56 0.00 0.00 3.85
6787 20108 2.035783 GCCCTGGGTTCTTGGTCC 59.964 66.667 15.56 0.00 0.00 4.46
6788 20109 1.303643 CTGCCCTGGGTTCTTGGTC 60.304 63.158 15.56 0.00 0.00 4.02
6789 20110 2.846532 CTGCCCTGGGTTCTTGGT 59.153 61.111 15.56 0.00 0.00 3.67
6790 20111 2.677875 GCTGCCCTGGGTTCTTGG 60.678 66.667 15.56 0.00 0.00 3.61
6791 20112 2.115910 TGCTGCCCTGGGTTCTTG 59.884 61.111 15.56 1.67 0.00 3.02
6792 20113 2.116125 GTGCTGCCCTGGGTTCTT 59.884 61.111 15.56 0.00 0.00 2.52
6793 20114 4.335647 CGTGCTGCCCTGGGTTCT 62.336 66.667 15.56 0.00 0.00 3.01
6794 20115 4.643387 ACGTGCTGCCCTGGGTTC 62.643 66.667 15.56 4.38 0.00 3.62
6795 20116 4.204028 AACGTGCTGCCCTGGGTT 62.204 61.111 15.56 0.00 0.00 4.11
6796 20117 4.954970 CAACGTGCTGCCCTGGGT 62.955 66.667 15.56 0.00 0.00 4.51
6799 20120 4.332637 GTGCAACGTGCTGCCCTG 62.333 66.667 9.62 0.00 45.31 4.45
6804 20125 3.964875 GTGGGGTGCAACGTGCTG 61.965 66.667 0.00 0.00 45.31 4.41
6807 20128 3.345808 CTCGTGGGGTGCAACGTG 61.346 66.667 8.38 2.80 40.61 4.49
6808 20129 3.857038 ACTCGTGGGGTGCAACGT 61.857 61.111 8.38 0.00 40.61 3.99
6809 20130 3.345808 CACTCGTGGGGTGCAACG 61.346 66.667 2.24 2.24 38.12 4.10
6810 20131 2.978010 CCACTCGTGGGGTGCAAC 60.978 66.667 8.22 0.00 46.81 4.17
6819 20140 1.961277 GGCTGTCAACCCACTCGTG 60.961 63.158 0.00 0.00 0.00 4.35
6820 20141 2.426023 GGCTGTCAACCCACTCGT 59.574 61.111 0.00 0.00 0.00 4.18
6821 20142 1.961277 GTGGCTGTCAACCCACTCG 60.961 63.158 12.80 0.00 46.23 4.18
6822 20143 4.065110 GTGGCTGTCAACCCACTC 57.935 61.111 12.80 0.00 46.23 3.51
6828 20149 1.668151 GACTCGGGTGGCTGTCAAC 60.668 63.158 0.00 0.00 0.00 3.18
6829 20150 2.741092 GACTCGGGTGGCTGTCAA 59.259 61.111 0.00 0.00 0.00 3.18
6830 20151 3.680786 CGACTCGGGTGGCTGTCA 61.681 66.667 0.00 0.00 0.00 3.58
6836 20157 2.439701 TAGGAGCGACTCGGGTGG 60.440 66.667 0.00 0.00 0.00 4.61
6837 20158 1.994507 CTGTAGGAGCGACTCGGGTG 61.995 65.000 0.00 0.00 0.00 4.61
6838 20159 1.749638 CTGTAGGAGCGACTCGGGT 60.750 63.158 0.00 0.00 0.00 5.28
6839 20160 1.440938 CTCTGTAGGAGCGACTCGGG 61.441 65.000 0.00 0.00 35.08 5.14
6840 20161 2.018544 CTCTGTAGGAGCGACTCGG 58.981 63.158 0.00 0.00 35.08 4.63
6848 20169 8.504815 CATCAAATCAATTATGCTCTGTAGGAG 58.495 37.037 0.00 0.00 44.49 3.69
6849 20170 7.446319 CCATCAAATCAATTATGCTCTGTAGGA 59.554 37.037 0.00 0.00 0.00 2.94
6850 20171 7.446319 TCCATCAAATCAATTATGCTCTGTAGG 59.554 37.037 0.00 0.00 0.00 3.18
6851 20172 8.387190 TCCATCAAATCAATTATGCTCTGTAG 57.613 34.615 0.00 0.00 0.00 2.74
6852 20173 8.750515 TTCCATCAAATCAATTATGCTCTGTA 57.249 30.769 0.00 0.00 0.00 2.74
6853 20174 7.649533 TTCCATCAAATCAATTATGCTCTGT 57.350 32.000 0.00 0.00 0.00 3.41
6854 20175 6.641314 GCTTCCATCAAATCAATTATGCTCTG 59.359 38.462 0.00 0.00 0.00 3.35
6855 20176 6.322969 TGCTTCCATCAAATCAATTATGCTCT 59.677 34.615 0.00 0.00 0.00 4.09
6856 20177 6.420008 GTGCTTCCATCAAATCAATTATGCTC 59.580 38.462 0.00 0.00 0.00 4.26
6857 20178 6.127281 TGTGCTTCCATCAAATCAATTATGCT 60.127 34.615 0.00 0.00 0.00 3.79
6858 20179 6.044046 TGTGCTTCCATCAAATCAATTATGC 58.956 36.000 0.00 0.00 0.00 3.14
6859 20180 9.406828 CTATGTGCTTCCATCAAATCAATTATG 57.593 33.333 0.00 0.00 0.00 1.90
6860 20181 9.139734 ACTATGTGCTTCCATCAAATCAATTAT 57.860 29.630 0.00 0.00 0.00 1.28
6866 20187 5.505324 GCTGACTATGTGCTTCCATCAAATC 60.505 44.000 0.00 0.00 0.00 2.17
6877 20198 2.167281 CTGTAGTGGCTGACTATGTGCT 59.833 50.000 0.37 0.00 39.44 4.40
6898 20219 6.969828 ACTCAAGTTTAAGATTGGATCGAC 57.030 37.500 0.00 0.00 0.00 4.20
6909 20230 5.494632 ACCGGTTCAAACTCAAGTTTAAG 57.505 39.130 0.00 0.00 45.54 1.85
6917 20238 1.134220 AGAGCAACCGGTTCAAACTCA 60.134 47.619 25.96 0.00 0.00 3.41
6929 20250 2.462723 AGTAGGGAAGAGAGAGCAACC 58.537 52.381 0.00 0.00 0.00 3.77
6932 20253 2.313342 AGGAAGTAGGGAAGAGAGAGCA 59.687 50.000 0.00 0.00 0.00 4.26
6937 20258 2.927007 TGGAGAGGAAGTAGGGAAGAGA 59.073 50.000 0.00 0.00 0.00 3.10
6974 20295 8.794553 ACTAGAGACTGACCCGTATATATTTTG 58.205 37.037 0.00 0.00 0.00 2.44
6975 20296 8.937207 ACTAGAGACTGACCCGTATATATTTT 57.063 34.615 0.00 0.00 0.00 1.82
6976 20297 8.937207 AACTAGAGACTGACCCGTATATATTT 57.063 34.615 0.00 0.00 0.00 1.40
6977 20298 7.611079 GGAACTAGAGACTGACCCGTATATATT 59.389 40.741 0.00 0.00 0.00 1.28
6978 20299 7.037442 AGGAACTAGAGACTGACCCGTATATAT 60.037 40.741 0.00 0.00 36.02 0.86
6979 20300 6.271857 AGGAACTAGAGACTGACCCGTATATA 59.728 42.308 0.00 0.00 36.02 0.86
6980 20301 5.073417 AGGAACTAGAGACTGACCCGTATAT 59.927 44.000 0.00 0.00 36.02 0.86
6981 20302 4.411540 AGGAACTAGAGACTGACCCGTATA 59.588 45.833 0.00 0.00 36.02 1.47
6982 20303 3.202595 AGGAACTAGAGACTGACCCGTAT 59.797 47.826 0.00 0.00 36.02 3.06
6983 20304 2.575279 AGGAACTAGAGACTGACCCGTA 59.425 50.000 0.00 0.00 36.02 4.02
6984 20305 1.355043 AGGAACTAGAGACTGACCCGT 59.645 52.381 0.00 0.00 36.02 5.28
6985 20306 2.131776 AGGAACTAGAGACTGACCCG 57.868 55.000 0.00 0.00 36.02 5.28
6986 20307 4.202172 GCATTAGGAACTAGAGACTGACCC 60.202 50.000 0.00 0.00 44.25 4.46
6987 20308 4.402793 TGCATTAGGAACTAGAGACTGACC 59.597 45.833 0.00 0.00 44.25 4.02
6988 20309 5.584253 TGCATTAGGAACTAGAGACTGAC 57.416 43.478 0.00 0.00 44.25 3.51
6989 20310 5.303078 GGATGCATTAGGAACTAGAGACTGA 59.697 44.000 0.00 0.00 44.25 3.41
6990 20311 5.069648 TGGATGCATTAGGAACTAGAGACTG 59.930 44.000 0.00 0.00 44.25 3.51
6991 20312 5.211973 TGGATGCATTAGGAACTAGAGACT 58.788 41.667 0.00 0.00 44.25 3.24
6992 20313 5.537300 TGGATGCATTAGGAACTAGAGAC 57.463 43.478 0.00 0.00 44.25 3.36
6993 20314 9.720874 ATATATGGATGCATTAGGAACTAGAGA 57.279 33.333 4.56 0.00 44.25 3.10
6996 20317 9.684448 CGTATATATGGATGCATTAGGAACTAG 57.316 37.037 4.56 0.00 44.25 2.57
6997 20318 8.638873 CCGTATATATGGATGCATTAGGAACTA 58.361 37.037 15.00 0.00 35.40 2.24
7006 20327 4.716784 ACTCACCCGTATATATGGATGCAT 59.283 41.667 20.80 4.68 34.17 3.96
7009 20330 5.914898 TCACTCACCCGTATATATGGATG 57.085 43.478 20.80 15.10 34.17 3.51
7017 20338 5.655090 TCTTCTGATTTCACTCACCCGTATA 59.345 40.000 0.00 0.00 0.00 1.47
7018 20339 4.466370 TCTTCTGATTTCACTCACCCGTAT 59.534 41.667 0.00 0.00 0.00 3.06
7019 20340 3.830178 TCTTCTGATTTCACTCACCCGTA 59.170 43.478 0.00 0.00 0.00 4.02
7020 20341 2.632996 TCTTCTGATTTCACTCACCCGT 59.367 45.455 0.00 0.00 0.00 5.28
7022 20343 4.278975 ACTCTTCTGATTTCACTCACCC 57.721 45.455 0.00 0.00 0.00 4.61
7023 20344 5.300752 TCAACTCTTCTGATTTCACTCACC 58.699 41.667 0.00 0.00 0.00 4.02
7024 20345 6.091986 GGATCAACTCTTCTGATTTCACTCAC 59.908 42.308 0.00 0.00 33.63 3.51
7025 20346 6.169094 GGATCAACTCTTCTGATTTCACTCA 58.831 40.000 0.00 0.00 33.63 3.41
7029 20350 7.822161 TTTTGGATCAACTCTTCTGATTTCA 57.178 32.000 0.00 0.00 33.63 2.69
7064 20385 0.881796 CCTTCGCTTGGGTTTCCTTC 59.118 55.000 0.00 0.00 0.00 3.46
7067 20388 1.901464 TGCCTTCGCTTGGGTTTCC 60.901 57.895 0.00 0.00 35.36 3.13
7068 20389 1.285950 GTGCCTTCGCTTGGGTTTC 59.714 57.895 0.00 0.00 35.36 2.78
7069 20390 1.040339 TTGTGCCTTCGCTTGGGTTT 61.040 50.000 0.00 0.00 35.36 3.27
7070 20391 1.040339 TTTGTGCCTTCGCTTGGGTT 61.040 50.000 0.00 0.00 35.36 4.11
7072 20393 1.172180 TCTTTGTGCCTTCGCTTGGG 61.172 55.000 0.00 0.00 35.36 4.12
7074 20395 0.662619 TGTCTTTGTGCCTTCGCTTG 59.337 50.000 0.00 0.00 35.36 4.01
7075 20396 1.065551 GTTGTCTTTGTGCCTTCGCTT 59.934 47.619 0.00 0.00 35.36 4.68
7076 20397 0.663153 GTTGTCTTTGTGCCTTCGCT 59.337 50.000 0.00 0.00 35.36 4.93
7077 20398 0.380378 TGTTGTCTTTGTGCCTTCGC 59.620 50.000 0.00 0.00 0.00 4.70
7078 20399 3.354089 AATGTTGTCTTTGTGCCTTCG 57.646 42.857 0.00 0.00 0.00 3.79
7079 20400 5.181690 TGTAATGTTGTCTTTGTGCCTTC 57.818 39.130 0.00 0.00 0.00 3.46
7080 20401 5.536161 AGATGTAATGTTGTCTTTGTGCCTT 59.464 36.000 0.00 0.00 0.00 4.35
7081 20402 5.072741 AGATGTAATGTTGTCTTTGTGCCT 58.927 37.500 0.00 0.00 0.00 4.75
7082 20403 5.376854 AGATGTAATGTTGTCTTTGTGCC 57.623 39.130 0.00 0.00 0.00 5.01
7083 20404 7.698836 AAAAGATGTAATGTTGTCTTTGTGC 57.301 32.000 0.00 0.00 39.92 4.57
7084 20405 8.057742 GCAAAAAGATGTAATGTTGTCTTTGTG 58.942 33.333 10.87 10.87 43.70 3.33
7085 20406 7.224557 GGCAAAAAGATGTAATGTTGTCTTTGT 59.775 33.333 0.00 0.00 39.92 2.83
7086 20407 7.224362 TGGCAAAAAGATGTAATGTTGTCTTTG 59.776 33.333 0.00 0.00 39.92 2.77
7087 20408 7.271511 TGGCAAAAAGATGTAATGTTGTCTTT 58.728 30.769 0.00 0.00 41.30 2.52
7088 20409 6.815089 TGGCAAAAAGATGTAATGTTGTCTT 58.185 32.000 0.00 0.00 26.23 3.01
7089 20410 6.403866 TGGCAAAAAGATGTAATGTTGTCT 57.596 33.333 0.00 0.00 26.23 3.41
7090 20411 6.867816 TGATGGCAAAAAGATGTAATGTTGTC 59.132 34.615 0.00 0.00 26.23 3.18
7091 20412 6.646240 GTGATGGCAAAAAGATGTAATGTTGT 59.354 34.615 0.00 0.00 26.23 3.32
7092 20413 6.183360 CGTGATGGCAAAAAGATGTAATGTTG 60.183 38.462 0.00 0.00 26.23 3.33
7093 20414 5.863397 CGTGATGGCAAAAAGATGTAATGTT 59.137 36.000 0.00 0.00 0.00 2.71
7099 20420 4.218200 TGATTCGTGATGGCAAAAAGATGT 59.782 37.500 0.00 0.00 0.00 3.06
7109 20430 1.933181 TGATTCGTGATTCGTGATGGC 59.067 47.619 0.00 0.00 40.80 4.40
7110 20431 4.801147 ATTGATTCGTGATTCGTGATGG 57.199 40.909 0.00 0.00 40.80 3.51
7111 20432 6.355405 GCTTTATTGATTCGTGATTCGTGATG 59.645 38.462 0.00 0.00 40.80 3.07
7112 20433 6.258727 AGCTTTATTGATTCGTGATTCGTGAT 59.741 34.615 0.00 0.00 40.80 3.06
7113 20434 5.580691 AGCTTTATTGATTCGTGATTCGTGA 59.419 36.000 0.00 0.00 40.80 4.35
7114 20435 5.799960 AGCTTTATTGATTCGTGATTCGTG 58.200 37.500 0.00 0.00 40.80 4.35
7115 20436 5.276395 CGAGCTTTATTGATTCGTGATTCGT 60.276 40.000 0.00 0.00 40.80 3.85
7116 20437 5.126423 CGAGCTTTATTGATTCGTGATTCG 58.874 41.667 0.00 0.00 41.41 3.34
7117 20438 4.900747 GCGAGCTTTATTGATTCGTGATTC 59.099 41.667 0.00 0.00 34.05 2.52
7118 20439 4.260784 GGCGAGCTTTATTGATTCGTGATT 60.261 41.667 0.00 0.00 34.05 2.57
7128 20449 1.299541 ATCACCGGCGAGCTTTATTG 58.700 50.000 9.30 0.00 0.00 1.90
7129 20450 2.038387 AATCACCGGCGAGCTTTATT 57.962 45.000 9.30 0.00 0.00 1.40
7144 20465 6.212955 TCGTCGTGAGCAATCAATATAATCA 58.787 36.000 0.00 0.00 0.00 2.57
7149 20470 3.384668 CCTCGTCGTGAGCAATCAATAT 58.615 45.455 0.00 0.00 43.82 1.28
7150 20471 2.481276 CCCTCGTCGTGAGCAATCAATA 60.481 50.000 0.00 0.00 43.82 1.90
7151 20472 1.645034 CCTCGTCGTGAGCAATCAAT 58.355 50.000 0.00 0.00 43.82 2.57
7152 20473 0.389817 CCCTCGTCGTGAGCAATCAA 60.390 55.000 0.00 0.00 43.82 2.57
7153 20474 1.215382 CCCTCGTCGTGAGCAATCA 59.785 57.895 0.00 0.00 43.82 2.57
7171 20492 1.576421 CAAGTGCTCAGGGAAACGC 59.424 57.895 0.00 0.00 0.00 4.84
7174 20495 0.183492 AGTGCAAGTGCTCAGGGAAA 59.817 50.000 4.69 0.00 42.66 3.13
7175 20496 0.183492 AAGTGCAAGTGCTCAGGGAA 59.817 50.000 4.69 0.00 42.66 3.97
7217 20538 4.704833 TTCAGGCCGGCAGCTGAC 62.705 66.667 28.40 15.64 43.05 3.51
7218 20539 4.399395 CTTCAGGCCGGCAGCTGA 62.399 66.667 30.85 27.93 43.05 4.26
7219 20540 4.399395 TCTTCAGGCCGGCAGCTG 62.399 66.667 30.85 26.06 43.05 4.24
7220 20541 4.093291 CTCTTCAGGCCGGCAGCT 62.093 66.667 30.85 14.88 43.05 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.