Multiple sequence alignment - TraesCS5D01G002700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G002700 chr5D 100.000 6057 0 0 1 6057 2679350 2673294 0.000000e+00 11186.0
1 TraesCS5D01G002700 chr5D 79.953 424 38 24 2977 3390 2675955 2675569 1.000000e-67 268.0
2 TraesCS5D01G002700 chr5D 79.953 424 38 24 3396 3782 2676374 2675961 1.000000e-67 268.0
3 TraesCS5D01G002700 chr5D 83.019 159 23 2 5807 5963 561671716 561671872 2.280000e-29 141.0
4 TraesCS5D01G002700 chr5A 91.213 3915 191 71 1454 5297 2104350 2108182 0.000000e+00 5182.0
5 TraesCS5D01G002700 chr5A 86.478 673 36 23 782 1453 2103702 2104320 0.000000e+00 688.0
6 TraesCS5D01G002700 chr5A 91.531 307 21 2 13 314 2102873 2103179 9.390000e-113 418.0
7 TraesCS5D01G002700 chr5A 91.866 209 14 2 5298 5505 2108478 2108684 7.680000e-74 289.0
8 TraesCS5D01G002700 chr5A 83.387 313 43 5 11 314 2094820 2095132 1.290000e-71 281.0
9 TraesCS5D01G002700 chr5A 79.009 424 43 18 2974 3390 2106294 2106678 1.300000e-61 248.0
10 TraesCS5D01G002700 chr5A 78.824 425 44 24 3393 3782 2105878 2106291 1.690000e-60 244.0
11 TraesCS5D01G002700 chr5A 91.489 47 4 0 2602 2648 2103096 2103050 1.410000e-06 65.8
12 TraesCS5D01G002700 chr3B 86.645 2763 175 83 669 3344 720893859 720891204 0.000000e+00 2880.0
13 TraesCS5D01G002700 chr3B 91.304 736 37 11 4288 5016 720890457 720889742 0.000000e+00 979.0
14 TraesCS5D01G002700 chr3B 84.148 921 71 34 3396 4279 720891570 720890688 0.000000e+00 822.0
15 TraesCS5D01G002700 chr3B 87.440 621 54 18 5020 5631 720889433 720888828 0.000000e+00 693.0
16 TraesCS5D01G002700 chr3B 78.682 258 42 7 5803 6056 650808986 650808738 6.280000e-35 159.0
17 TraesCS5D01G002700 chr5B 89.778 1262 73 31 2109 3344 2573289 2572058 0.000000e+00 1565.0
18 TraesCS5D01G002700 chr5B 92.874 828 46 9 3877 4697 2571947 2571126 0.000000e+00 1190.0
19 TraesCS5D01G002700 chr5B 88.876 872 69 15 5205 6056 2570428 2569565 0.000000e+00 1048.0
20 TraesCS5D01G002700 chr5B 85.363 731 37 27 4673 5399 155251070 155250406 0.000000e+00 693.0
21 TraesCS5D01G002700 chr5B 89.558 498 22 14 1548 2016 2573909 2573413 6.720000e-169 604.0
22 TraesCS5D01G002700 chr5B 82.917 720 40 36 755 1428 2574586 2573904 6.810000e-159 571.0
23 TraesCS5D01G002700 chr5B 93.355 301 12 3 4874 5171 2570827 2570532 7.210000e-119 438.0
24 TraesCS5D01G002700 chr5B 80.082 487 61 24 3396 3857 2572411 2571936 4.530000e-86 329.0
25 TraesCS5D01G002700 chr4D 86.803 735 42 21 4673 5399 484990848 484990161 0.000000e+00 769.0
26 TraesCS5D01G002700 chr3D 86.667 735 43 21 4673 5399 500872928 500873615 0.000000e+00 763.0
27 TraesCS5D01G002700 chr3D 93.358 271 16 1 5238 5508 52194679 52194947 3.400000e-107 399.0
28 TraesCS5D01G002700 chr3D 86.087 345 15 15 4861 5204 52194372 52194684 2.090000e-89 340.0
29 TraesCS5D01G002700 chr2D 86.667 735 42 25 4673 5399 66187194 66186508 0.000000e+00 763.0
30 TraesCS5D01G002700 chr2D 86.179 738 41 26 4670 5399 473951080 473951764 0.000000e+00 741.0
31 TraesCS5D01G002700 chr2D 82.278 79 9 4 1 76 26461537 26461461 5.070000e-06 63.9
32 TraesCS5D01G002700 chr7D 85.850 735 49 25 4673 5399 637026152 637025465 0.000000e+00 730.0
33 TraesCS5D01G002700 chr7D 77.143 175 31 6 5796 5967 611257815 611257983 6.460000e-15 93.5
34 TraesCS5D01G002700 chr3A 79.283 251 44 3 5798 6047 632037917 632038160 1.040000e-37 169.0
35 TraesCS5D01G002700 chr4A 83.333 174 27 2 1548 1720 583420430 583420602 6.280000e-35 159.0
36 TraesCS5D01G002700 chr4B 84.810 79 12 0 1348 1426 300801344 300801422 5.030000e-11 80.5
37 TraesCS5D01G002700 chr2A 100.000 30 0 0 47 76 28685847 28685818 8.480000e-04 56.5
38 TraesCS5D01G002700 chrUn 100.000 28 0 0 1116 1143 43072314 43072341 1.100000e-02 52.8
39 TraesCS5D01G002700 chr7A 100.000 28 0 0 1116 1143 21841932 21841905 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G002700 chr5D 2673294 2679350 6056 True 3907.333333 11186 86.635333 1 6057 3 chr5D.!!$R1 6056
1 TraesCS5D01G002700 chr5A 2102873 2108684 5811 False 1178.166667 5182 86.486833 13 5505 6 chr5A.!!$F2 5492
2 TraesCS5D01G002700 chr3B 720888828 720893859 5031 True 1343.500000 2880 87.384250 669 5631 4 chr3B.!!$R2 4962
3 TraesCS5D01G002700 chr5B 2569565 2574586 5021 True 820.714286 1565 88.205714 755 6056 7 chr5B.!!$R2 5301
4 TraesCS5D01G002700 chr5B 155250406 155251070 664 True 693.000000 693 85.363000 4673 5399 1 chr5B.!!$R1 726
5 TraesCS5D01G002700 chr4D 484990161 484990848 687 True 769.000000 769 86.803000 4673 5399 1 chr4D.!!$R1 726
6 TraesCS5D01G002700 chr3D 500872928 500873615 687 False 763.000000 763 86.667000 4673 5399 1 chr3D.!!$F1 726
7 TraesCS5D01G002700 chr3D 52194372 52194947 575 False 369.500000 399 89.722500 4861 5508 2 chr3D.!!$F2 647
8 TraesCS5D01G002700 chr2D 66186508 66187194 686 True 763.000000 763 86.667000 4673 5399 1 chr2D.!!$R2 726
9 TraesCS5D01G002700 chr2D 473951080 473951764 684 False 741.000000 741 86.179000 4670 5399 1 chr2D.!!$F1 729
10 TraesCS5D01G002700 chr7D 637025465 637026152 687 True 730.000000 730 85.850000 4673 5399 1 chr7D.!!$R1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 87 0.038618 GCGGGTTGGTTCCATGAAAC 60.039 55.0 0.0 0.0 0.00 2.78 F
387 509 0.040425 AATTTGTCGTCCTTGCGTGC 60.040 50.0 0.0 0.0 0.00 5.34 F
708 872 0.179020 TCCACACCAAAGCCTGACTG 60.179 55.0 0.0 0.0 0.00 3.51 F
1746 2017 0.403655 TGCCTGTCCAATGCCAACTA 59.596 50.0 0.0 0.0 0.00 2.24 F
3644 4060 0.035056 AGCCCGCTCTTGTTAAGCAT 60.035 50.0 0.0 0.0 39.81 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1648 0.111061 TATGGACATGCCTGATGCCC 59.889 55.0 0.0 0.0 40.16 5.36 R
2233 2584 0.249447 GTTGTTGGCTTGTGGGAAGC 60.249 55.0 0.0 0.0 42.30 3.86 R
2255 2606 0.547712 TAGGAAGGAGCCAAGGCAGT 60.548 55.0 14.4 0.0 44.88 4.40 R
3709 4125 0.028902 GACACGTTCGCTGCCTTTTT 59.971 50.0 0.0 0.0 0.00 1.94 R
5379 6916 0.540923 CTCCCTCTGCTCCTTCCTTG 59.459 60.0 0.0 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.685155 GCATAAATCCAGTAGAATGCAACCATT 60.685 37.037 0.00 0.00 44.11 3.16
35 36 6.610075 AAATCCAGTAGAATGCAACCATTT 57.390 33.333 0.00 0.00 41.60 2.32
43 44 2.634815 ATGCAACCATTTGTGCCAAA 57.365 40.000 0.00 3.33 34.90 3.28
45 46 2.928334 TGCAACCATTTGTGCCAAATT 58.072 38.095 9.58 0.00 34.90 1.82
53 54 5.071653 ACCATTTGTGCCAAATTTAGGACTT 59.928 36.000 9.41 0.00 0.00 3.01
56 57 5.860941 TTGTGCCAAATTTAGGACTTGAA 57.139 34.783 9.41 0.00 0.00 2.69
59 60 3.576550 TGCCAAATTTAGGACTTGAACCC 59.423 43.478 9.90 0.00 0.00 4.11
63 64 2.579410 TTTAGGACTTGAACCCTGGC 57.421 50.000 0.00 0.00 34.11 4.85
76 77 2.035626 CTGGCGGGTTGGTTCCAT 59.964 61.111 0.00 0.00 0.00 3.41
77 78 2.282816 TGGCGGGTTGGTTCCATG 60.283 61.111 0.00 0.00 0.00 3.66
81 87 0.038618 GCGGGTTGGTTCCATGAAAC 60.039 55.000 0.00 0.00 0.00 2.78
92 98 5.469479 GGTTCCATGAAACCTAACAATGTG 58.531 41.667 6.60 0.00 44.45 3.21
104 110 0.736325 ACAATGTGAGCTACGCCGAC 60.736 55.000 0.00 0.00 0.00 4.79
214 220 0.952497 CCATGATGCCCTCCGATTCG 60.952 60.000 0.00 0.00 0.00 3.34
263 269 3.039011 AGGAGTGTGTACTTGTCCTGTT 58.961 45.455 6.02 0.00 37.25 3.16
273 279 6.526674 GTGTACTTGTCCTGTTTTGTTTCTTG 59.473 38.462 0.00 0.00 0.00 3.02
306 312 4.219288 GCCAGTCATCCAACAAGAAAGAAT 59.781 41.667 0.00 0.00 0.00 2.40
328 449 9.297037 AGAATTACTACTAAACATGGCAACTTT 57.703 29.630 0.00 0.00 37.61 2.66
329 450 9.556030 GAATTACTACTAAACATGGCAACTTTC 57.444 33.333 0.00 0.00 37.61 2.62
333 454 1.851658 AAACATGGCAACTTTCGTGC 58.148 45.000 0.00 0.00 37.61 5.34
335 456 1.032014 ACATGGCAACTTTCGTGCTT 58.968 45.000 0.00 0.00 37.61 3.91
336 457 1.408702 ACATGGCAACTTTCGTGCTTT 59.591 42.857 0.00 0.00 37.61 3.51
337 458 2.159114 ACATGGCAACTTTCGTGCTTTT 60.159 40.909 0.00 0.00 37.61 2.27
339 460 4.236935 CATGGCAACTTTCGTGCTTTTAT 58.763 39.130 0.00 0.00 37.61 1.40
346 467 8.279800 GGCAACTTTCGTGCTTTTATTTTATTT 58.720 29.630 0.00 0.00 0.00 1.40
357 479 8.064814 TGCTTTTATTTTATTTTTGACAACCGC 58.935 29.630 0.00 0.00 0.00 5.68
362 484 2.570442 ATTTTTGACAACCGCGTGTT 57.430 40.000 4.92 6.23 37.80 3.32
366 488 0.931702 TTGACAACCGCGTGTTACTG 59.068 50.000 4.92 1.00 34.69 2.74
374 496 1.533731 CCGCGTGTTACTGGAATTTGT 59.466 47.619 4.92 0.00 0.00 2.83
376 498 2.720590 CGCGTGTTACTGGAATTTGTCG 60.721 50.000 0.00 0.00 0.00 4.35
379 501 3.120786 CGTGTTACTGGAATTTGTCGTCC 60.121 47.826 0.00 0.00 0.00 4.79
382 504 4.513692 TGTTACTGGAATTTGTCGTCCTTG 59.486 41.667 0.00 0.00 0.00 3.61
387 509 0.040425 AATTTGTCGTCCTTGCGTGC 60.040 50.000 0.00 0.00 0.00 5.34
388 510 0.884704 ATTTGTCGTCCTTGCGTGCT 60.885 50.000 0.00 0.00 0.00 4.40
391 513 2.664851 TCGTCCTTGCGTGCTTGG 60.665 61.111 0.00 0.00 0.00 3.61
396 518 0.597568 TCCTTGCGTGCTTGGAATTG 59.402 50.000 4.42 0.00 0.00 2.32
399 521 1.462731 TTGCGTGCTTGGAATTGCCT 61.463 50.000 0.00 0.00 37.63 4.75
401 523 0.733909 GCGTGCTTGGAATTGCCTTC 60.734 55.000 0.00 0.00 37.63 3.46
427 549 4.688511 AACGTTAGAGCTAGAGTGTCAG 57.311 45.455 0.00 0.00 0.00 3.51
432 554 1.755959 AGAGCTAGAGTGTCAGGCATG 59.244 52.381 0.00 0.00 0.00 4.06
433 555 0.829333 AGCTAGAGTGTCAGGCATGG 59.171 55.000 0.00 0.00 0.00 3.66
463 585 5.113502 GACACTTGTCATTTGGGAAAGAG 57.886 43.478 4.43 0.00 44.18 2.85
464 586 4.792068 ACACTTGTCATTTGGGAAAGAGA 58.208 39.130 0.00 0.00 0.00 3.10
466 588 5.835280 ACACTTGTCATTTGGGAAAGAGAAT 59.165 36.000 0.00 0.00 0.00 2.40
472 605 8.792830 TGTCATTTGGGAAAGAGAATTACTAG 57.207 34.615 0.00 0.00 0.00 2.57
483 616 5.999044 AGAGAATTACTAGTGGGTACTCGA 58.001 41.667 5.39 0.00 38.36 4.04
484 617 5.821995 AGAGAATTACTAGTGGGTACTCGAC 59.178 44.000 5.39 0.00 38.36 4.20
519 667 7.122650 GGGATTAGTGAAAAGGTCATCATCAAA 59.877 37.037 0.00 0.00 38.90 2.69
532 683 8.861086 AGGTCATCATCAAATACGTAGAATACT 58.139 33.333 0.08 0.00 40.12 2.12
552 703 4.815269 ACTAGGACTACGCGTATAGGTAG 58.185 47.826 20.91 18.72 41.43 3.18
561 712 8.245701 ACTACGCGTATAGGTAGTAACTAATC 57.754 38.462 20.91 0.00 45.47 1.75
566 717 8.165428 CGCGTATAGGTAGTAACTAATCAGTAC 58.835 40.741 0.00 0.00 33.48 2.73
567 718 8.165428 GCGTATAGGTAGTAACTAATCAGTACG 58.835 40.741 16.00 16.00 33.48 3.67
568 719 9.197694 CGTATAGGTAGTAACTAATCAGTACGT 57.802 37.037 13.55 0.00 33.48 3.57
571 722 7.470289 AGGTAGTAACTAATCAGTACGTACG 57.530 40.000 19.49 15.01 33.48 3.67
572 723 7.042335 AGGTAGTAACTAATCAGTACGTACGT 58.958 38.462 25.98 25.98 33.48 3.57
573 724 8.195436 AGGTAGTAACTAATCAGTACGTACGTA 58.805 37.037 23.60 23.60 33.48 3.57
574 725 8.480853 GGTAGTAACTAATCAGTACGTACGTAG 58.519 40.741 27.48 17.99 33.48 3.51
575 726 9.021863 GTAGTAACTAATCAGTACGTACGTAGT 57.978 37.037 27.48 26.79 38.55 2.73
581 732 8.759641 ACTAATCAGTACGTACGTAGTAATCAG 58.240 37.037 29.83 21.32 37.85 2.90
591 742 2.476686 CGTAGTAATCAGCAACGACGGA 60.477 50.000 0.00 0.00 39.87 4.69
592 743 2.961526 AGTAATCAGCAACGACGGAT 57.038 45.000 0.00 0.00 0.00 4.18
593 744 2.810650 AGTAATCAGCAACGACGGATC 58.189 47.619 0.00 0.00 0.00 3.36
594 745 1.859080 GTAATCAGCAACGACGGATCC 59.141 52.381 0.00 0.00 0.00 3.36
595 746 0.537188 AATCAGCAACGACGGATCCT 59.463 50.000 10.75 0.00 0.00 3.24
596 747 1.399714 ATCAGCAACGACGGATCCTA 58.600 50.000 10.75 0.00 0.00 2.94
597 748 0.454600 TCAGCAACGACGGATCCTAC 59.545 55.000 10.75 2.54 0.00 3.18
598 749 0.527817 CAGCAACGACGGATCCTACC 60.528 60.000 10.75 0.00 0.00 3.18
599 750 1.227176 GCAACGACGGATCCTACCC 60.227 63.158 10.75 0.00 0.00 3.69
600 751 1.673808 GCAACGACGGATCCTACCCT 61.674 60.000 10.75 0.00 0.00 4.34
601 752 1.683943 CAACGACGGATCCTACCCTA 58.316 55.000 10.75 0.00 0.00 3.53
602 753 1.607628 CAACGACGGATCCTACCCTAG 59.392 57.143 10.75 0.00 0.00 3.02
613 764 7.396623 ACGGATCCTACCCTAGTTATTATCTTG 59.603 40.741 10.75 0.00 0.00 3.02
618 769 9.892444 TCCTACCCTAGTTATTATCTTGAATGA 57.108 33.333 0.00 0.00 0.00 2.57
662 817 5.081728 TGATGATGATTCCAATCCAATCCC 58.918 41.667 0.00 0.00 34.50 3.85
663 818 3.848303 TGATGATTCCAATCCAATCCCC 58.152 45.455 0.00 0.00 34.50 4.81
665 820 4.078454 TGATGATTCCAATCCAATCCCCTT 60.078 41.667 0.00 0.00 34.50 3.95
666 821 3.914771 TGATTCCAATCCAATCCCCTTC 58.085 45.455 0.00 0.00 34.50 3.46
667 822 3.533068 TGATTCCAATCCAATCCCCTTCT 59.467 43.478 0.00 0.00 34.50 2.85
685 840 4.141937 CCTTCTTAATCTCGTCCATGGTCA 60.142 45.833 12.58 0.00 0.00 4.02
708 872 0.179020 TCCACACCAAAGCCTGACTG 60.179 55.000 0.00 0.00 0.00 3.51
711 875 0.839946 ACACCAAAGCCTGACTGACT 59.160 50.000 0.00 0.00 0.00 3.41
714 878 0.535780 CCAAAGCCTGACTGACTGCA 60.536 55.000 0.00 0.00 0.00 4.41
732 896 4.190772 CTGCAATCTCTCCTCCTTTTCTC 58.809 47.826 0.00 0.00 0.00 2.87
735 899 4.875536 GCAATCTCTCCTCCTTTTCTCTTC 59.124 45.833 0.00 0.00 0.00 2.87
737 901 6.710278 CAATCTCTCCTCCTTTTCTCTTCTT 58.290 40.000 0.00 0.00 0.00 2.52
738 902 6.950860 ATCTCTCCTCCTTTTCTCTTCTTT 57.049 37.500 0.00 0.00 0.00 2.52
740 904 7.142995 TCTCTCCTCCTTTTCTCTTCTTTTT 57.857 36.000 0.00 0.00 0.00 1.94
777 941 1.137825 CAGACTTCTCTCCGCCGTC 59.862 63.158 0.00 0.00 0.00 4.79
778 942 2.047443 AGACTTCTCTCCGCCGTCC 61.047 63.158 0.00 0.00 0.00 4.79
779 943 2.035940 ACTTCTCTCCGCCGTCCT 59.964 61.111 0.00 0.00 0.00 3.85
780 944 1.995646 GACTTCTCTCCGCCGTCCTC 61.996 65.000 0.00 0.00 0.00 3.71
800 964 0.539438 CCTCCTCGATCTCCTCCCTG 60.539 65.000 0.00 0.00 0.00 4.45
828 994 1.862827 CTGTTGCTTTGCTTTTGCCTC 59.137 47.619 0.00 0.00 46.87 4.70
888 1060 1.734388 GATGTTAATGGCCGCCACCC 61.734 60.000 16.16 3.34 35.80 4.61
889 1061 2.361865 GTTAATGGCCGCCACCCA 60.362 61.111 16.16 0.00 35.80 4.51
890 1062 2.361865 TTAATGGCCGCCACCCAC 60.362 61.111 16.16 0.00 35.80 4.61
891 1063 3.948004 TTAATGGCCGCCACCCACC 62.948 63.158 16.16 0.00 35.80 4.61
900 1072 3.238497 CCACCCACCTCGTGACCA 61.238 66.667 0.00 0.00 35.23 4.02
901 1073 2.030562 CACCCACCTCGTGACCAC 59.969 66.667 0.00 0.00 35.23 4.16
905 1077 2.802724 CCACCTCGTGACCACACCA 61.803 63.158 0.85 0.00 43.34 4.17
906 1078 1.594293 CACCTCGTGACCACACCAC 60.594 63.158 0.85 0.00 43.34 4.16
908 1080 1.371183 CCTCGTGACCACACCACAT 59.629 57.895 0.85 0.00 43.34 3.21
927 1112 0.616679 TGACCTTAACCCCTCCCTCG 60.617 60.000 0.00 0.00 0.00 4.63
934 1119 4.150454 CCCCTCCCTCGCTCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
948 1133 2.890602 GCTCCTCTCTAAACCCACTCCT 60.891 54.545 0.00 0.00 0.00 3.69
952 1153 4.294168 TCCTCTCTAAACCCACTCCTTCTA 59.706 45.833 0.00 0.00 0.00 2.10
985 1190 7.418368 CCTTCTCATCTCTGGCTAATTAACTGA 60.418 40.741 0.00 0.00 0.00 3.41
999 1204 1.091771 AACTGATTCATGCCGGAGCG 61.092 55.000 5.05 0.00 44.31 5.03
1238 1461 3.040763 GCCGCGGATCTGCATCTC 61.041 66.667 33.48 2.06 34.15 2.75
1272 1495 2.970324 GGCTGCGACGTCACCAAA 60.970 61.111 17.16 0.00 0.00 3.28
1416 1648 0.958876 TCATGCTCAACCTGCAGCTG 60.959 55.000 10.11 10.11 44.04 4.24
1459 1720 4.918810 TTCTTTCCTTCCTTTTGTCAGC 57.081 40.909 0.00 0.00 0.00 4.26
1518 1789 1.411977 CACAGTTTTGGTGGCAATGGA 59.588 47.619 0.00 0.00 32.65 3.41
1520 1791 3.257873 CACAGTTTTGGTGGCAATGGATA 59.742 43.478 0.00 0.00 32.65 2.59
1542 1813 8.713271 GGATAGTGAATTCGATGGTTATTCTTC 58.287 37.037 0.04 2.90 31.25 2.87
1746 2017 0.403655 TGCCTGTCCAATGCCAACTA 59.596 50.000 0.00 0.00 0.00 2.24
1747 2018 0.811281 GCCTGTCCAATGCCAACTAC 59.189 55.000 0.00 0.00 0.00 2.73
1748 2019 1.886222 GCCTGTCCAATGCCAACTACA 60.886 52.381 0.00 0.00 0.00 2.74
1749 2020 2.086869 CCTGTCCAATGCCAACTACAG 58.913 52.381 0.00 0.00 35.29 2.74
1754 2029 6.056090 TGTCCAATGCCAACTACAGTAATA 57.944 37.500 0.00 0.00 0.00 0.98
1793 2086 5.865085 TGTTACTTCAACCTGCTCTGTAAT 58.135 37.500 0.00 0.00 36.20 1.89
1828 2127 8.785329 TGTTTTCTTTTTATCTTGGTTTGCTT 57.215 26.923 0.00 0.00 0.00 3.91
1829 2128 8.878769 TGTTTTCTTTTTATCTTGGTTTGCTTC 58.121 29.630 0.00 0.00 0.00 3.86
1830 2129 8.878769 GTTTTCTTTTTATCTTGGTTTGCTTCA 58.121 29.630 0.00 0.00 0.00 3.02
1831 2130 8.419076 TTTCTTTTTATCTTGGTTTGCTTCAC 57.581 30.769 0.00 0.00 0.00 3.18
1832 2131 7.106439 TCTTTTTATCTTGGTTTGCTTCACA 57.894 32.000 0.00 0.00 0.00 3.58
2101 2452 2.771089 TCTTCTGTGGTGTTCTGCATC 58.229 47.619 0.00 0.00 0.00 3.91
2167 2518 5.280654 TGTTAAACGGTACAAGAACTCCT 57.719 39.130 0.00 0.00 0.00 3.69
2231 2582 1.598701 GGGCAGAAGGTGTGCAATCC 61.599 60.000 0.00 0.00 43.12 3.01
2232 2583 0.610232 GGCAGAAGGTGTGCAATCCT 60.610 55.000 5.25 5.25 43.12 3.24
2233 2584 0.524862 GCAGAAGGTGTGCAATCCTG 59.475 55.000 11.04 4.12 40.86 3.86
2255 2606 1.561643 TCCCACAAGCCAACAACAAA 58.438 45.000 0.00 0.00 0.00 2.83
2278 2629 0.107459 CCTTGGCTCCTTCCTAGTGC 60.107 60.000 0.00 0.00 0.00 4.40
2288 2639 1.272490 CTTCCTAGTGCTGTTGACCGA 59.728 52.381 0.00 0.00 0.00 4.69
2330 2709 0.451783 GGTTCATCGTCATGGGCAAC 59.548 55.000 0.00 0.00 0.00 4.17
2387 2766 2.896685 CGATCTGAAAGGCTCCTCCTAT 59.103 50.000 0.00 0.00 46.94 2.57
2540 2920 0.935366 GGTGATGCTAGCGCGACTAC 60.935 60.000 12.10 6.73 39.65 2.73
2570 2973 1.723542 CAGCAACATCGAGTCTGACAC 59.276 52.381 10.88 2.58 0.00 3.67
2754 3167 3.502123 TGGGTGTTACTTGAAGGAAGG 57.498 47.619 0.00 0.00 35.78 3.46
2757 3170 3.064931 GGTGTTACTTGAAGGAAGGACG 58.935 50.000 0.00 0.00 35.78 4.79
2760 3173 2.450609 TACTTGAAGGAAGGACGTGC 57.549 50.000 0.00 0.00 35.78 5.34
2763 3176 2.222027 CTTGAAGGAAGGACGTGCTTT 58.778 47.619 23.74 8.05 0.00 3.51
2785 3198 9.567848 GCTTTTGCTAAATGCTAAATAAGTACA 57.432 29.630 0.00 0.00 43.18 2.90
2832 3247 1.004610 CCGCTAACGTGAGCAATCATG 60.005 52.381 24.56 6.96 42.99 3.07
2833 3248 1.593070 CGCTAACGTGAGCAATCATGC 60.593 52.381 24.56 0.00 42.99 4.06
2834 3249 4.118172 CGCTAACGTGAGCAATCATGCA 62.118 50.000 24.56 0.00 44.45 3.96
2835 3250 5.368500 CGCTAACGTGAGCAATCATGCAT 62.368 47.826 24.56 0.00 44.45 3.96
3163 3578 4.038642 TGTCACCCCTTTAAATGTTTGCTC 59.961 41.667 0.00 0.00 0.00 4.26
3168 3583 3.987220 CCCTTTAAATGTTTGCTCAACGG 59.013 43.478 0.00 0.00 38.36 4.44
3236 3652 1.477700 TGTTGCTTGCAATATGAGCCC 59.522 47.619 11.32 0.00 35.59 5.19
3298 3714 5.560724 TGACATCTTGGCTTAGCTACTTTT 58.439 37.500 3.59 0.00 0.00 2.27
3300 3716 7.338710 TGACATCTTGGCTTAGCTACTTTTAT 58.661 34.615 3.59 0.00 0.00 1.40
3367 3783 2.229792 TGAATGAGCAACCACTTCCAC 58.770 47.619 0.00 0.00 0.00 4.02
3372 3788 2.143925 GAGCAACCACTTCCACACTAC 58.856 52.381 0.00 0.00 0.00 2.73
3373 3789 1.768870 AGCAACCACTTCCACACTACT 59.231 47.619 0.00 0.00 0.00 2.57
3374 3790 2.969950 AGCAACCACTTCCACACTACTA 59.030 45.455 0.00 0.00 0.00 1.82
3430 3846 7.061557 GCTTCTTGACACTTGCAGAATTAAATC 59.938 37.037 0.00 0.00 0.00 2.17
3493 3909 3.074412 ACCGATTAAACTGCAGAACCTG 58.926 45.455 23.35 3.51 34.12 4.00
3494 3910 3.074412 CCGATTAAACTGCAGAACCTGT 58.926 45.455 23.35 1.03 33.43 4.00
3504 3920 3.843999 TGCAGAACCTGTTTTTGTCAAC 58.156 40.909 0.00 0.00 33.43 3.18
3540 3956 7.201556 CCTGTAAACATCATATGTCAGTGACAC 60.202 40.741 27.70 11.07 45.65 3.67
3552 3968 5.747565 TGTCAGTGACACGAAAATGAAATC 58.252 37.500 22.06 0.00 37.67 2.17
3612 4028 5.163530 TGTGTGTGCAAGATCAAATCTGTTT 60.164 36.000 0.00 0.00 40.13 2.83
3644 4060 0.035056 AGCCCGCTCTTGTTAAGCAT 60.035 50.000 0.00 0.00 39.81 3.79
3659 4075 9.950680 CTTGTTAAGCATAAAGAGTGAAGAAAA 57.049 29.630 0.00 0.00 0.00 2.29
3709 4125 5.200483 ACTTTGAATGTTTCCCTGTCAGAA 58.800 37.500 0.00 0.00 0.00 3.02
3771 4187 2.678336 GCAACCACTTCCATGCTACTAC 59.322 50.000 0.00 0.00 35.93 2.73
3895 4322 9.593134 CACTATGAGAGCTTCAGTTACTAAATT 57.407 33.333 0.00 0.00 39.68 1.82
3905 4332 6.476243 TCAGTTACTAAATTTGTCGCCTTC 57.524 37.500 0.00 0.00 0.00 3.46
3918 4345 4.450976 TGTCGCCTTCTGCAAATACATAT 58.549 39.130 0.00 0.00 41.33 1.78
4015 4442 3.605749 CTGGGGTCGCATTGTCCGT 62.606 63.158 0.00 0.00 0.00 4.69
4016 4443 2.818274 GGGGTCGCATTGTCCGTC 60.818 66.667 0.00 0.00 0.00 4.79
4020 4447 0.389948 GGTCGCATTGTCCGTCTCTT 60.390 55.000 0.00 0.00 0.00 2.85
4082 4509 1.651240 CTTGATTGCTGCCGTCCCTG 61.651 60.000 0.00 0.00 0.00 4.45
4084 4511 3.628646 GATTGCTGCCGTCCCTGGT 62.629 63.158 0.00 0.00 0.00 4.00
4124 4551 3.101437 TCTGGCATCATTTGGATTGCTT 58.899 40.909 0.00 0.00 32.57 3.91
4150 4577 3.257624 CCCCACCTGTAATACCGAGATAC 59.742 52.174 0.00 0.00 0.00 2.24
4154 4581 3.573110 ACCTGTAATACCGAGATACCAGC 59.427 47.826 0.00 0.00 0.00 4.85
4188 4615 9.702726 AATTATTCTATCGTGTTCATCGTTTTG 57.297 29.630 0.00 0.00 0.00 2.44
4240 4672 2.574018 GGCAACTCCAACCCCAAGC 61.574 63.158 0.00 0.00 34.01 4.01
4335 4989 9.938280 TTCATTTTTAATCGGTCTTCTCTTAGA 57.062 29.630 0.00 0.00 0.00 2.10
4350 5004 5.866207 TCTCTTAGAAACTTCAGGAAACCC 58.134 41.667 0.00 0.00 0.00 4.11
4405 5059 1.816679 GAGCGCACATCCATGAGCA 60.817 57.895 11.47 0.00 46.63 4.26
4449 5103 2.762875 GGGGGATTCTCGTCGGGT 60.763 66.667 0.00 0.00 0.00 5.28
4634 5288 0.682855 TTCCGGGATTTCATGGGCAC 60.683 55.000 0.00 0.00 0.00 5.01
4720 5379 5.047164 TGGCGTTACCACAGTAAAGAAGATA 60.047 40.000 3.57 0.00 46.36 1.98
4722 5381 6.369615 GGCGTTACCACAGTAAAGAAGATAAA 59.630 38.462 3.57 0.00 40.12 1.40
4723 5382 7.412672 GGCGTTACCACAGTAAAGAAGATAAAG 60.413 40.741 3.57 0.00 40.12 1.85
4725 5384 9.367444 CGTTACCACAGTAAAGAAGATAAAGAT 57.633 33.333 0.00 0.00 40.12 2.40
4740 5399 7.595819 AGATAAAGATTGTGAGTAGAGGGAG 57.404 40.000 0.00 0.00 0.00 4.30
4752 5420 0.030297 AGAGGGAGATGGTGGCTGAT 60.030 55.000 0.00 0.00 0.00 2.90
4794 5465 0.995024 CATGGGGAAGGAAGAGGTGT 59.005 55.000 0.00 0.00 0.00 4.16
4795 5466 0.995024 ATGGGGAAGGAAGAGGTGTG 59.005 55.000 0.00 0.00 0.00 3.82
4796 5467 1.133809 TGGGGAAGGAAGAGGTGTGG 61.134 60.000 0.00 0.00 0.00 4.17
4797 5468 1.134438 GGGGAAGGAAGAGGTGTGGT 61.134 60.000 0.00 0.00 0.00 4.16
4798 5469 0.036875 GGGAAGGAAGAGGTGTGGTG 59.963 60.000 0.00 0.00 0.00 4.17
4799 5470 0.765510 GGAAGGAAGAGGTGTGGTGT 59.234 55.000 0.00 0.00 0.00 4.16
4827 5499 6.204688 GTCTGTAAATGGTTTGTGTGATCTGA 59.795 38.462 0.00 0.00 0.00 3.27
4906 5748 1.610522 GGCTGCTTTGCCCTATGTATG 59.389 52.381 0.00 0.00 46.82 2.39
4910 5752 5.245531 GCTGCTTTGCCCTATGTATGTATA 58.754 41.667 0.00 0.00 0.00 1.47
4912 5754 6.183360 GCTGCTTTGCCCTATGTATGTATATG 60.183 42.308 0.00 0.00 0.00 1.78
4913 5755 6.778821 TGCTTTGCCCTATGTATGTATATGT 58.221 36.000 0.00 0.00 0.00 2.29
4914 5756 6.654582 TGCTTTGCCCTATGTATGTATATGTG 59.345 38.462 0.00 0.00 0.00 3.21
4915 5757 6.655003 GCTTTGCCCTATGTATGTATATGTGT 59.345 38.462 0.00 0.00 0.00 3.72
4916 5758 7.361201 GCTTTGCCCTATGTATGTATATGTGTG 60.361 40.741 0.00 0.00 0.00 3.82
4917 5759 6.680148 TGCCCTATGTATGTATATGTGTGT 57.320 37.500 0.00 0.00 0.00 3.72
4918 5760 7.073457 TGCCCTATGTATGTATATGTGTGTT 57.927 36.000 0.00 0.00 0.00 3.32
4919 5761 6.934083 TGCCCTATGTATGTATATGTGTGTTG 59.066 38.462 0.00 0.00 0.00 3.33
4920 5762 6.371548 GCCCTATGTATGTATATGTGTGTTGG 59.628 42.308 0.00 0.00 0.00 3.77
4921 5763 7.676004 CCCTATGTATGTATATGTGTGTTGGA 58.324 38.462 0.00 0.00 0.00 3.53
4984 5832 5.469760 TGTTTGATGCGAAAGAGAAGATGAA 59.530 36.000 0.00 0.00 0.00 2.57
5016 6174 8.720537 TGTAAGCCATGGATGATGATATGATAT 58.279 33.333 18.40 0.00 33.31 1.63
5017 6175 9.000486 GTAAGCCATGGATGATGATATGATATG 58.000 37.037 18.40 0.00 33.31 1.78
5018 6176 7.388638 AGCCATGGATGATGATATGATATGA 57.611 36.000 18.40 0.00 33.31 2.15
5019 6177 7.990055 AGCCATGGATGATGATATGATATGAT 58.010 34.615 18.40 0.00 33.31 2.45
5020 6178 9.112658 AGCCATGGATGATGATATGATATGATA 57.887 33.333 18.40 0.00 33.31 2.15
5040 6198 8.789767 ATGATAGTAGGGAAGAAAGATCTTGA 57.210 34.615 9.17 0.00 45.91 3.02
5073 6231 1.077212 ATGCATGGCACTGTCTCCC 60.077 57.895 0.00 0.00 43.04 4.30
5184 6342 0.568192 TTCCCCCATAGAGGAGGAGG 59.432 60.000 0.00 0.00 41.22 4.30
5302 6836 8.358148 TGATTAGCAGCCATAGTTTAGTAGTAC 58.642 37.037 0.00 0.00 0.00 2.73
5372 6909 2.872557 CATTGGTCAGCGTGCCAG 59.127 61.111 0.00 0.00 36.00 4.85
5399 6936 1.271127 AAGGAAGGAGCAGAGGGAGC 61.271 60.000 0.00 0.00 0.00 4.70
5453 6998 6.088824 CACTTGCACTATTTTTAAGCCTCAG 58.911 40.000 0.00 0.00 0.00 3.35
5459 7004 3.961480 ATTTTTAAGCCTCAGGTTGCC 57.039 42.857 0.00 0.00 34.89 4.52
5595 7149 8.315482 AGTACTCTCTCATTTTCCTTTTACTCC 58.685 37.037 0.00 0.00 0.00 3.85
5602 7156 7.012327 TCTCATTTTCCTTTTACTCCGCATATG 59.988 37.037 0.00 0.00 0.00 1.78
5604 7158 6.677781 TTTTCCTTTTACTCCGCATATGAG 57.322 37.500 6.97 2.53 35.92 2.90
5612 7166 2.213499 CTCCGCATATGAGGTTTGTCC 58.787 52.381 22.92 0.00 36.33 4.02
5618 7172 3.063997 GCATATGAGGTTTGTCCGAAGTG 59.936 47.826 6.97 0.00 41.99 3.16
5798 7354 3.788227 AAAGGAAGGAGTATGTGTGCA 57.212 42.857 0.00 0.00 0.00 4.57
5803 7359 2.299993 AGGAGTATGTGTGCATGTCG 57.700 50.000 0.00 0.00 36.58 4.35
5809 7365 1.022982 ATGTGTGCATGTCGCTCCAG 61.023 55.000 0.00 0.00 43.06 3.86
5848 7404 3.976701 AATCCCGGTGCCTTCGCTG 62.977 63.158 0.00 0.00 35.36 5.18
5870 7426 4.586001 TGCGGATAGTAGTTTAGGTTAGGG 59.414 45.833 0.00 0.00 0.00 3.53
5871 7427 4.586421 GCGGATAGTAGTTTAGGTTAGGGT 59.414 45.833 0.00 0.00 0.00 4.34
5872 7428 5.069648 GCGGATAGTAGTTTAGGTTAGGGTT 59.930 44.000 0.00 0.00 0.00 4.11
5873 7429 6.407412 GCGGATAGTAGTTTAGGTTAGGGTTT 60.407 42.308 0.00 0.00 0.00 3.27
5896 7452 1.110442 TTTTGTCCTTGCAGGTGTGG 58.890 50.000 0.00 0.00 36.53 4.17
5936 7494 3.810386 GCTCCTTCTTCGAGTTTGTCTTT 59.190 43.478 0.00 0.00 0.00 2.52
5944 7502 2.059541 CGAGTTTGTCTTTCGGACTCC 58.940 52.381 0.00 0.00 44.74 3.85
5971 7529 5.600898 TCCTTATCGAGTTTGTCCATATGGA 59.399 40.000 20.98 20.98 43.08 3.41
6003 7561 2.398554 GCTTCGGCGCAGATTTCCA 61.399 57.895 11.95 0.00 0.00 3.53
6006 7564 3.864686 CGGCGCAGATTTCCACCG 61.865 66.667 10.83 0.00 0.00 4.94
6014 7572 2.160417 GCAGATTTCCACCGTCTTCTTG 59.840 50.000 0.00 0.00 0.00 3.02
6019 7577 2.750350 CACCGTCTTCTTGGGGCT 59.250 61.111 0.00 0.00 0.00 5.19
6020 7578 1.550130 CCACCGTCTTCTTGGGGCTA 61.550 60.000 0.00 0.00 0.00 3.93
6024 7582 1.202580 CCGTCTTCTTGGGGCTATGAG 60.203 57.143 0.00 0.00 0.00 2.90
6028 7586 3.454812 GTCTTCTTGGGGCTATGAGGTTA 59.545 47.826 0.00 0.00 0.00 2.85
6029 7587 3.711704 TCTTCTTGGGGCTATGAGGTTAG 59.288 47.826 0.00 0.00 0.00 2.34
6038 7597 3.492829 GGCTATGAGGTTAGGGTTTCTCG 60.493 52.174 0.00 0.00 0.00 4.04
6040 7599 4.039366 GCTATGAGGTTAGGGTTTCTCGAT 59.961 45.833 0.00 0.00 0.00 3.59
6053 7612 4.985409 GGTTTCTCGATATGTGGAGTGATC 59.015 45.833 1.59 0.00 32.59 2.92
6056 7615 4.718961 TCTCGATATGTGGAGTGATCTGA 58.281 43.478 1.59 0.00 32.59 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.790937 TGCATTCTACTGGATTTATGCCA 58.209 39.130 0.00 0.00 35.80 4.92
7 8 5.507985 GGTTGCATTCTACTGGATTTATGCC 60.508 44.000 0.00 0.00 35.80 4.40
8 9 5.067674 TGGTTGCATTCTACTGGATTTATGC 59.932 40.000 0.00 0.00 36.66 3.14
9 10 6.698008 TGGTTGCATTCTACTGGATTTATG 57.302 37.500 0.00 0.00 0.00 1.90
10 11 7.902920 AATGGTTGCATTCTACTGGATTTAT 57.097 32.000 0.00 0.00 0.00 1.40
11 12 7.178274 ACAAATGGTTGCATTCTACTGGATTTA 59.822 33.333 0.00 0.00 38.39 1.40
20 21 2.896044 TGGCACAAATGGTTGCATTCTA 59.104 40.909 0.00 0.00 38.39 2.10
22 23 2.166821 TGGCACAAATGGTTGCATTC 57.833 45.000 0.00 0.00 38.39 2.67
35 36 4.038642 GGTTCAAGTCCTAAATTTGGCACA 59.961 41.667 0.00 0.00 0.00 4.57
43 44 2.618045 CGCCAGGGTTCAAGTCCTAAAT 60.618 50.000 0.00 0.00 0.00 1.40
45 46 0.323629 CGCCAGGGTTCAAGTCCTAA 59.676 55.000 0.00 0.00 0.00 2.69
59 60 2.035626 ATGGAACCAACCCGCCAG 59.964 61.111 0.00 0.00 33.26 4.85
63 64 0.601057 GGTTTCATGGAACCAACCCG 59.399 55.000 28.22 0.00 46.66 5.28
76 77 4.688879 CGTAGCTCACATTGTTAGGTTTCA 59.311 41.667 7.90 0.00 0.00 2.69
77 78 5.204673 CGTAGCTCACATTGTTAGGTTTC 57.795 43.478 7.90 2.69 0.00 2.78
248 254 6.190954 AGAAACAAAACAGGACAAGTACAC 57.809 37.500 0.00 0.00 0.00 2.90
263 269 2.227865 GCCGATACCAGCAAGAAACAAA 59.772 45.455 0.00 0.00 0.00 2.83
306 312 6.707161 ACGAAAGTTGCCATGTTTAGTAGTAA 59.293 34.615 0.00 0.00 46.40 2.24
314 320 1.408702 AGCACGAAAGTTGCCATGTTT 59.591 42.857 0.00 0.00 46.40 2.83
329 450 9.364110 GGTTGTCAAAAATAAAATAAAAGCACG 57.636 29.630 0.00 0.00 0.00 5.34
333 454 8.270111 ACGCGGTTGTCAAAAATAAAATAAAAG 58.730 29.630 12.47 0.00 0.00 2.27
335 456 7.222224 ACACGCGGTTGTCAAAAATAAAATAAA 59.778 29.630 12.47 0.00 0.00 1.40
336 457 6.696148 ACACGCGGTTGTCAAAAATAAAATAA 59.304 30.769 12.47 0.00 0.00 1.40
337 458 6.207213 ACACGCGGTTGTCAAAAATAAAATA 58.793 32.000 12.47 0.00 0.00 1.40
339 460 4.421948 ACACGCGGTTGTCAAAAATAAAA 58.578 34.783 12.47 0.00 0.00 1.52
346 467 1.328069 CAGTAACACGCGGTTGTCAAA 59.672 47.619 12.47 0.00 40.73 2.69
357 479 3.120786 GGACGACAAATTCCAGTAACACG 60.121 47.826 0.00 0.00 0.00 4.49
362 484 3.071479 GCAAGGACGACAAATTCCAGTA 58.929 45.455 0.00 0.00 33.92 2.74
366 488 0.872388 ACGCAAGGACGACAAATTCC 59.128 50.000 0.00 0.00 46.39 3.01
374 496 2.652382 TTCCAAGCACGCAAGGACGA 62.652 55.000 2.39 0.00 46.39 4.20
376 498 0.598065 AATTCCAAGCACGCAAGGAC 59.402 50.000 2.39 0.00 46.39 3.85
379 501 1.010419 GGCAATTCCAAGCACGCAAG 61.010 55.000 0.00 0.00 38.02 4.01
382 504 0.733909 GAAGGCAATTCCAAGCACGC 60.734 55.000 0.00 0.00 37.29 5.34
407 529 3.011119 CCTGACACTCTAGCTCTAACGT 58.989 50.000 0.00 0.00 0.00 3.99
408 530 2.223386 GCCTGACACTCTAGCTCTAACG 60.223 54.545 0.00 0.00 0.00 3.18
409 531 2.755655 TGCCTGACACTCTAGCTCTAAC 59.244 50.000 0.00 0.00 0.00 2.34
410 532 3.087370 TGCCTGACACTCTAGCTCTAA 57.913 47.619 0.00 0.00 0.00 2.10
411 533 2.808906 TGCCTGACACTCTAGCTCTA 57.191 50.000 0.00 0.00 0.00 2.43
412 534 1.755959 CATGCCTGACACTCTAGCTCT 59.244 52.381 0.00 0.00 0.00 4.09
413 535 1.202510 CCATGCCTGACACTCTAGCTC 60.203 57.143 0.00 0.00 0.00 4.09
414 536 0.829333 CCATGCCTGACACTCTAGCT 59.171 55.000 0.00 0.00 0.00 3.32
415 537 0.179062 CCCATGCCTGACACTCTAGC 60.179 60.000 0.00 0.00 0.00 3.42
416 538 1.137872 GTCCCATGCCTGACACTCTAG 59.862 57.143 0.00 0.00 0.00 2.43
417 539 1.195115 GTCCCATGCCTGACACTCTA 58.805 55.000 0.00 0.00 0.00 2.43
418 540 0.837691 TGTCCCATGCCTGACACTCT 60.838 55.000 6.80 0.00 36.62 3.24
419 541 0.254178 ATGTCCCATGCCTGACACTC 59.746 55.000 11.59 0.00 43.69 3.51
420 542 0.034767 CATGTCCCATGCCTGACACT 60.035 55.000 11.59 2.15 43.69 3.55
424 546 0.035152 GTCACATGTCCCATGCCTGA 60.035 55.000 0.00 0.00 0.00 3.86
427 549 0.322816 AGTGTCACATGTCCCATGCC 60.323 55.000 5.62 0.00 0.00 4.40
441 563 4.821805 TCTCTTTCCCAAATGACAAGTGTC 59.178 41.667 4.43 4.43 44.97 3.67
442 564 4.792068 TCTCTTTCCCAAATGACAAGTGT 58.208 39.130 0.00 0.00 0.00 3.55
448 570 8.669243 CACTAGTAATTCTCTTTCCCAAATGAC 58.331 37.037 0.00 0.00 0.00 3.06
455 577 5.695424 ACCCACTAGTAATTCTCTTTCCC 57.305 43.478 0.00 0.00 0.00 3.97
456 578 7.421087 AGTACCCACTAGTAATTCTCTTTCC 57.579 40.000 0.00 0.00 31.45 3.13
457 579 7.066766 TCGAGTACCCACTAGTAATTCTCTTTC 59.933 40.741 0.00 0.00 34.21 2.62
459 581 6.318396 GTCGAGTACCCACTAGTAATTCTCTT 59.682 42.308 0.00 0.00 34.21 2.85
460 582 5.821995 GTCGAGTACCCACTAGTAATTCTCT 59.178 44.000 0.00 0.00 34.21 3.10
461 583 5.008514 GGTCGAGTACCCACTAGTAATTCTC 59.991 48.000 0.00 0.10 43.16 2.87
462 584 4.886489 GGTCGAGTACCCACTAGTAATTCT 59.114 45.833 0.00 0.00 43.16 2.40
463 585 5.180367 GGTCGAGTACCCACTAGTAATTC 57.820 47.826 0.00 0.00 43.16 2.17
483 616 6.155049 CCTTTTCACTAATCCCATTCATTGGT 59.845 38.462 0.00 0.00 44.83 3.67
484 617 6.155049 ACCTTTTCACTAATCCCATTCATTGG 59.845 38.462 0.00 0.00 46.00 3.16
485 618 7.093814 TGACCTTTTCACTAATCCCATTCATTG 60.094 37.037 0.00 0.00 0.00 2.82
498 631 7.822334 ACGTATTTGATGATGACCTTTTCACTA 59.178 33.333 0.00 0.00 36.92 2.74
500 633 6.842163 ACGTATTTGATGATGACCTTTTCAC 58.158 36.000 0.00 0.00 36.92 3.18
503 636 8.786826 TTCTACGTATTTGATGATGACCTTTT 57.213 30.769 0.00 0.00 0.00 2.27
504 637 8.964476 ATTCTACGTATTTGATGATGACCTTT 57.036 30.769 0.00 0.00 0.00 3.11
506 639 8.861086 AGTATTCTACGTATTTGATGATGACCT 58.139 33.333 0.00 0.00 0.00 3.85
532 683 4.873746 ACTACCTATACGCGTAGTCCTA 57.126 45.455 24.78 10.85 40.92 2.94
537 688 8.244494 TGATTAGTTACTACCTATACGCGTAG 57.756 38.462 24.78 13.61 38.34 3.51
541 692 8.165428 CGTACTGATTAGTTACTACCTATACGC 58.835 40.741 0.00 0.00 38.36 4.42
561 712 5.147767 TGCTGATTACTACGTACGTACTG 57.852 43.478 23.60 17.11 0.00 2.74
566 717 3.476379 GTCGTTGCTGATTACTACGTACG 59.524 47.826 15.01 15.01 34.15 3.67
567 718 3.476379 CGTCGTTGCTGATTACTACGTAC 59.524 47.826 0.00 0.00 31.36 3.67
568 719 3.485711 CCGTCGTTGCTGATTACTACGTA 60.486 47.826 0.00 0.00 33.30 3.57
570 721 1.844357 CCGTCGTTGCTGATTACTACG 59.156 52.381 0.00 0.00 34.46 3.51
571 722 3.141002 TCCGTCGTTGCTGATTACTAC 57.859 47.619 0.00 0.00 0.00 2.73
572 723 3.243301 GGATCCGTCGTTGCTGATTACTA 60.243 47.826 0.00 0.00 0.00 1.82
573 724 2.481449 GGATCCGTCGTTGCTGATTACT 60.481 50.000 0.00 0.00 0.00 2.24
574 725 1.859080 GGATCCGTCGTTGCTGATTAC 59.141 52.381 0.00 0.00 0.00 1.89
575 726 1.754803 AGGATCCGTCGTTGCTGATTA 59.245 47.619 5.98 0.00 0.00 1.75
581 732 1.227176 GGGTAGGATCCGTCGTTGC 60.227 63.158 5.98 0.00 0.00 4.17
592 743 9.892444 TCATTCAAGATAATAACTAGGGTAGGA 57.108 33.333 0.00 0.00 0.00 2.94
631 782 9.369672 TGGATTGGAATCATCATCATCATTTTA 57.630 29.630 1.94 0.00 37.15 1.52
633 784 7.849322 TGGATTGGAATCATCATCATCATTT 57.151 32.000 1.94 0.00 37.15 2.32
634 785 7.849322 TTGGATTGGAATCATCATCATCATT 57.151 32.000 1.94 0.00 37.15 2.57
636 787 6.436218 GGATTGGATTGGAATCATCATCATCA 59.564 38.462 1.94 0.00 37.15 3.07
637 788 6.127423 GGGATTGGATTGGAATCATCATCATC 60.127 42.308 1.94 0.00 37.15 2.92
662 817 4.141937 TGACCATGGACGAGATTAAGAAGG 60.142 45.833 21.47 0.00 0.00 3.46
663 818 5.011090 TGACCATGGACGAGATTAAGAAG 57.989 43.478 21.47 0.00 0.00 2.85
665 820 4.261614 CGATGACCATGGACGAGATTAAGA 60.262 45.833 21.47 0.00 0.00 2.10
666 821 3.983988 CGATGACCATGGACGAGATTAAG 59.016 47.826 21.47 0.00 0.00 1.85
667 822 3.383505 ACGATGACCATGGACGAGATTAA 59.616 43.478 21.47 0.00 0.00 1.40
685 840 0.606401 CAGGCTTTGGTGTGGACGAT 60.606 55.000 0.00 0.00 0.00 3.73
708 872 3.625649 AAAGGAGGAGAGATTGCAGTC 57.374 47.619 0.00 0.00 0.00 3.51
711 875 3.843027 AGAGAAAAGGAGGAGAGATTGCA 59.157 43.478 0.00 0.00 0.00 4.08
714 878 6.950860 AAGAAGAGAAAAGGAGGAGAGATT 57.049 37.500 0.00 0.00 0.00 2.40
741 905 2.094026 TCTGTCAGCGAGGTACGTAGTA 60.094 50.000 0.00 0.00 45.11 1.82
743 907 1.062294 GTCTGTCAGCGAGGTACGTAG 59.938 57.143 0.00 0.00 44.60 3.51
744 908 1.081892 GTCTGTCAGCGAGGTACGTA 58.918 55.000 0.00 0.00 44.60 3.57
745 909 0.605860 AGTCTGTCAGCGAGGTACGT 60.606 55.000 0.00 0.00 44.60 3.57
746 910 0.522180 AAGTCTGTCAGCGAGGTACG 59.478 55.000 0.00 0.00 45.66 3.67
747 911 1.813786 AGAAGTCTGTCAGCGAGGTAC 59.186 52.381 0.00 0.00 0.00 3.34
748 912 2.085320 GAGAAGTCTGTCAGCGAGGTA 58.915 52.381 0.00 0.00 0.00 3.08
749 913 0.885196 GAGAAGTCTGTCAGCGAGGT 59.115 55.000 0.00 0.00 0.00 3.85
750 914 1.132262 GAGAGAAGTCTGTCAGCGAGG 59.868 57.143 0.79 0.00 36.40 4.63
751 915 1.132262 GGAGAGAAGTCTGTCAGCGAG 59.868 57.143 7.67 0.00 37.94 5.03
752 916 1.169577 GGAGAGAAGTCTGTCAGCGA 58.830 55.000 7.67 0.00 37.94 4.93
753 917 0.179176 CGGAGAGAAGTCTGTCAGCG 60.179 60.000 7.67 0.00 37.94 5.18
777 941 0.251165 GAGGAGATCGAGGAGGGAGG 60.251 65.000 0.00 0.00 0.00 4.30
778 942 0.251165 GGAGGAGATCGAGGAGGGAG 60.251 65.000 0.00 0.00 0.00 4.30
779 943 1.721093 GGGAGGAGATCGAGGAGGGA 61.721 65.000 0.00 0.00 0.00 4.20
780 944 1.228737 GGGAGGAGATCGAGGAGGG 60.229 68.421 0.00 0.00 0.00 4.30
800 964 2.919328 AAAGCAACAGGGCAGGGC 60.919 61.111 0.00 0.00 35.83 5.19
845 1011 3.619929 CCATTGGCATTAGCAAAGAAAGC 59.380 43.478 0.00 0.00 44.61 3.51
888 1060 1.594293 GTGGTGTGGTCACGAGGTG 60.594 63.158 0.00 0.00 44.68 4.00
889 1061 1.407656 ATGTGGTGTGGTCACGAGGT 61.408 55.000 0.00 0.00 44.68 3.85
890 1062 0.950555 CATGTGGTGTGGTCACGAGG 60.951 60.000 0.00 0.00 44.68 4.63
891 1063 0.033366 TCATGTGGTGTGGTCACGAG 59.967 55.000 0.00 0.00 44.68 4.18
892 1064 0.249699 GTCATGTGGTGTGGTCACGA 60.250 55.000 0.00 0.00 44.68 4.35
894 1066 0.108585 AGGTCATGTGGTGTGGTCAC 59.891 55.000 0.00 0.00 43.19 3.67
895 1067 0.843309 AAGGTCATGTGGTGTGGTCA 59.157 50.000 0.00 0.00 0.00 4.02
896 1068 2.812011 GTTAAGGTCATGTGGTGTGGTC 59.188 50.000 0.00 0.00 0.00 4.02
897 1069 2.488347 GGTTAAGGTCATGTGGTGTGGT 60.488 50.000 0.00 0.00 0.00 4.16
898 1070 2.159382 GGTTAAGGTCATGTGGTGTGG 58.841 52.381 0.00 0.00 0.00 4.17
900 1072 1.074889 GGGGTTAAGGTCATGTGGTGT 59.925 52.381 0.00 0.00 0.00 4.16
901 1073 1.354368 AGGGGTTAAGGTCATGTGGTG 59.646 52.381 0.00 0.00 0.00 4.17
905 1077 1.203570 AGGGAGGGGTTAAGGTCATGT 60.204 52.381 0.00 0.00 0.00 3.21
906 1078 1.490910 GAGGGAGGGGTTAAGGTCATG 59.509 57.143 0.00 0.00 0.00 3.07
908 1080 0.616679 CGAGGGAGGGGTTAAGGTCA 60.617 60.000 0.00 0.00 0.00 4.02
927 1112 1.483004 GGAGTGGGTTTAGAGAGGAGC 59.517 57.143 0.00 0.00 0.00 4.70
934 1119 5.652324 AGAAGTAGAAGGAGTGGGTTTAGA 58.348 41.667 0.00 0.00 0.00 2.10
948 1133 6.379703 CCAGAGATGAGAAGGAAGAAGTAGAA 59.620 42.308 0.00 0.00 0.00 2.10
952 1153 3.197549 GCCAGAGATGAGAAGGAAGAAGT 59.802 47.826 0.00 0.00 0.00 3.01
985 1190 0.602106 CTCATCGCTCCGGCATGAAT 60.602 55.000 0.00 0.00 36.42 2.57
1127 1350 4.999939 CCTTGCCGTTGCCGTTGC 63.000 66.667 0.00 0.00 36.33 4.17
1258 1481 1.300620 CCTCTTTGGTGACGTCGCA 60.301 57.895 28.67 13.39 0.00 5.10
1259 1482 2.668280 GCCTCTTTGGTGACGTCGC 61.668 63.158 20.76 20.76 38.35 5.19
1268 1491 1.219393 GAGACGGAGGCCTCTTTGG 59.781 63.158 31.36 19.71 39.35 3.28
1269 1492 1.219393 GGAGACGGAGGCCTCTTTG 59.781 63.158 31.36 22.57 33.15 2.77
1270 1493 3.715015 GGAGACGGAGGCCTCTTT 58.285 61.111 31.36 18.80 33.15 2.52
1416 1648 0.111061 TATGGACATGCCTGATGCCC 59.889 55.000 0.00 0.00 40.16 5.36
1459 1720 1.213678 TCTGCAATGGAGAATCAGGGG 59.786 52.381 0.85 0.00 36.25 4.79
1518 1789 9.482627 GAGAAGAATAACCATCGAATTCACTAT 57.517 33.333 6.22 0.00 33.06 2.12
1520 1791 7.493971 CAGAGAAGAATAACCATCGAATTCACT 59.506 37.037 6.22 7.51 33.06 3.41
1746 2017 8.150945 ACAAGTGACTGAACTGAATATTACTGT 58.849 33.333 0.00 0.00 0.00 3.55
1747 2018 8.539770 ACAAGTGACTGAACTGAATATTACTG 57.460 34.615 0.00 0.00 0.00 2.74
1754 2029 7.047891 TGAAGTAACAAGTGACTGAACTGAAT 58.952 34.615 0.00 0.00 0.00 2.57
1817 2116 3.551454 CCTGTGATGTGAAGCAAACCAAG 60.551 47.826 0.00 0.00 0.00 3.61
1828 2127 1.339342 CCTCATGTGCCTGTGATGTGA 60.339 52.381 0.00 0.00 0.00 3.58
1829 2128 1.092348 CCTCATGTGCCTGTGATGTG 58.908 55.000 0.00 0.00 0.00 3.21
1830 2129 0.986527 TCCTCATGTGCCTGTGATGT 59.013 50.000 0.00 0.00 0.00 3.06
1831 2130 2.014857 CTTCCTCATGTGCCTGTGATG 58.985 52.381 0.00 0.00 0.00 3.07
1832 2131 1.681166 GCTTCCTCATGTGCCTGTGAT 60.681 52.381 0.00 0.00 0.00 3.06
1869 2176 2.703409 GCAAGCATGTAGTCCGCG 59.297 61.111 0.00 0.00 0.00 6.46
2050 2401 4.024387 TCGGCCGAAATTGATAAATAGTGC 60.024 41.667 28.99 0.00 0.00 4.40
2061 2412 1.378531 TGAATCCTCGGCCGAAATTG 58.621 50.000 29.91 19.60 0.00 2.32
2101 2452 5.179368 ACATCCGAATCAACAACTACACAAG 59.821 40.000 0.00 0.00 0.00 3.16
2167 2518 2.695359 GCCGTAGAACCTTGTGATCAA 58.305 47.619 0.00 0.00 0.00 2.57
2169 2520 1.278238 CGCCGTAGAACCTTGTGATC 58.722 55.000 0.00 0.00 0.00 2.92
2231 2582 1.108727 TGTTGGCTTGTGGGAAGCAG 61.109 55.000 8.56 0.00 44.71 4.24
2232 2583 0.685785 TTGTTGGCTTGTGGGAAGCA 60.686 50.000 8.56 0.00 44.71 3.91
2233 2584 0.249447 GTTGTTGGCTTGTGGGAAGC 60.249 55.000 0.00 0.00 42.30 3.86
2255 2606 0.547712 TAGGAAGGAGCCAAGGCAGT 60.548 55.000 14.40 0.00 44.88 4.40
2278 2629 3.403038 AGAACCAAGAATCGGTCAACAG 58.597 45.455 0.00 0.00 34.99 3.16
2288 2639 2.554032 CACCTGCGAAAGAACCAAGAAT 59.446 45.455 0.00 0.00 0.00 2.40
2342 2721 3.133014 CGATGGATCCGGTGCTCT 58.867 61.111 7.39 0.00 0.00 4.09
2478 2857 6.815089 ACTCATGAAGCTCTTTATACAGAGG 58.185 40.000 15.94 0.88 40.79 3.69
2535 2915 4.065088 TGTTGCTGGAAGACAATGTAGTC 58.935 43.478 0.00 0.00 38.81 2.59
2540 2920 2.743664 TCGATGTTGCTGGAAGACAATG 59.256 45.455 0.00 0.00 33.77 2.82
2570 2973 4.183865 TGCCTAGAGAAACAATGACATCG 58.816 43.478 0.00 0.00 0.00 3.84
2586 2990 3.126831 CAATCTCGCCTAAGTTGCCTAG 58.873 50.000 0.00 0.00 0.00 3.02
2785 3198 8.462589 AAAAACCATAATGTTGCCAAAATTCT 57.537 26.923 0.00 0.00 0.00 2.40
2832 3247 4.212214 CGAAAGCTCTTCTGGGTAATATGC 59.788 45.833 0.00 0.00 0.00 3.14
2833 3248 4.752101 CCGAAAGCTCTTCTGGGTAATATG 59.248 45.833 0.00 0.00 0.00 1.78
2834 3249 4.743955 GCCGAAAGCTCTTCTGGGTAATAT 60.744 45.833 14.56 0.00 38.99 1.28
2835 3250 3.431766 GCCGAAAGCTCTTCTGGGTAATA 60.432 47.826 14.56 0.00 38.99 0.98
3197 3613 7.198390 AGCAACATATATTTGATCTTGCACAC 58.802 34.615 16.59 0.00 35.95 3.82
3236 3652 5.348724 TCACTCTTTATGCTTAACAAGAGCG 59.651 40.000 15.77 10.01 43.02 5.03
3328 3744 4.012319 TCAATAGAGTAGCGACACGTTC 57.988 45.455 0.00 0.00 0.00 3.95
3331 3747 4.598062 TCATTCAATAGAGTAGCGACACG 58.402 43.478 0.00 0.00 0.00 4.49
3493 3909 5.687285 CAGGTATCTTGCAGTTGACAAAAAC 59.313 40.000 0.00 0.00 0.00 2.43
3494 3910 5.359576 ACAGGTATCTTGCAGTTGACAAAAA 59.640 36.000 0.00 0.00 0.00 1.94
3504 3920 6.932356 ATGATGTTTACAGGTATCTTGCAG 57.068 37.500 0.00 0.00 0.00 4.41
3612 4028 0.455410 GCGGGCTCATATTGCAAACA 59.545 50.000 1.71 0.00 0.00 2.83
3659 4075 3.881937 GCCAAGATGCCAGAAAAAGAT 57.118 42.857 0.00 0.00 0.00 2.40
3709 4125 0.028902 GACACGTTCGCTGCCTTTTT 59.971 50.000 0.00 0.00 0.00 1.94
3782 4198 9.074576 TGAGTGATTACTACAAAGAAGTACTCA 57.925 33.333 0.00 0.00 37.01 3.41
3926 4353 7.856145 AAAACAAGGCATGTGTTCAATTTAA 57.144 28.000 0.00 0.00 42.99 1.52
3930 4357 7.171337 GTCAATAAAACAAGGCATGTGTTCAAT 59.829 33.333 0.83 0.00 42.99 2.57
3931 4358 6.478344 GTCAATAAAACAAGGCATGTGTTCAA 59.522 34.615 0.83 0.00 42.99 2.69
3932 4359 5.982516 GTCAATAAAACAAGGCATGTGTTCA 59.017 36.000 0.83 0.00 42.99 3.18
4150 4577 5.643777 CGATAGAATAATTAAGGGGTGCTGG 59.356 44.000 0.00 0.00 39.76 4.85
4154 4581 7.713507 TGAACACGATAGAATAATTAAGGGGTG 59.286 37.037 0.00 0.00 41.38 4.61
4188 4615 9.197694 CAGTTGGTATTAGTCACATATAAGAGC 57.802 37.037 0.00 0.00 0.00 4.09
4335 4989 2.039418 GCCAAGGGTTTCCTGAAGTTT 58.961 47.619 0.00 0.00 44.07 2.66
4405 5059 0.531200 GAGAGGAACGGGTCGATGTT 59.469 55.000 0.00 0.00 0.00 2.71
4634 5288 5.632764 CACTAGCACTCCTTGATGAATATCG 59.367 44.000 0.00 0.00 36.04 2.92
4720 5379 5.130145 CCATCTCCCTCTACTCACAATCTTT 59.870 44.000 0.00 0.00 0.00 2.52
4722 5381 4.222336 CCATCTCCCTCTACTCACAATCT 58.778 47.826 0.00 0.00 0.00 2.40
4723 5382 3.964031 ACCATCTCCCTCTACTCACAATC 59.036 47.826 0.00 0.00 0.00 2.67
4725 5384 3.099905 CACCATCTCCCTCTACTCACAA 58.900 50.000 0.00 0.00 0.00 3.33
4726 5385 2.624293 CCACCATCTCCCTCTACTCACA 60.624 54.545 0.00 0.00 0.00 3.58
4727 5386 2.035632 CCACCATCTCCCTCTACTCAC 58.964 57.143 0.00 0.00 0.00 3.51
4770 5438 0.549902 TCTTCCTTCCCCATGAGCCA 60.550 55.000 0.00 0.00 0.00 4.75
4773 5441 1.211457 CACCTCTTCCTTCCCCATGAG 59.789 57.143 0.00 0.00 0.00 2.90
4794 5465 3.569194 ACCATTTACAGACACACACCA 57.431 42.857 0.00 0.00 0.00 4.17
4795 5466 4.097286 ACAAACCATTTACAGACACACACC 59.903 41.667 0.00 0.00 0.00 4.16
4796 5467 5.034152 CACAAACCATTTACAGACACACAC 58.966 41.667 0.00 0.00 0.00 3.82
4797 5468 4.702612 ACACAAACCATTTACAGACACACA 59.297 37.500 0.00 0.00 0.00 3.72
4798 5469 5.034152 CACACAAACCATTTACAGACACAC 58.966 41.667 0.00 0.00 0.00 3.82
4799 5470 4.944317 TCACACAAACCATTTACAGACACA 59.056 37.500 0.00 0.00 0.00 3.72
4827 5499 3.051940 TCTGATCTGCCCCTCACTAAT 57.948 47.619 0.00 0.00 0.00 1.73
4906 5748 5.650266 TCCAACCAATCCAACACACATATAC 59.350 40.000 0.00 0.00 0.00 1.47
4910 5752 2.892852 CTCCAACCAATCCAACACACAT 59.107 45.455 0.00 0.00 0.00 3.21
4912 5754 2.034558 CACTCCAACCAATCCAACACAC 59.965 50.000 0.00 0.00 0.00 3.82
4913 5755 2.092158 TCACTCCAACCAATCCAACACA 60.092 45.455 0.00 0.00 0.00 3.72
4914 5756 2.582052 TCACTCCAACCAATCCAACAC 58.418 47.619 0.00 0.00 0.00 3.32
4915 5757 3.304911 TTCACTCCAACCAATCCAACA 57.695 42.857 0.00 0.00 0.00 3.33
4916 5758 3.005791 CCTTTCACTCCAACCAATCCAAC 59.994 47.826 0.00 0.00 0.00 3.77
4917 5759 3.230134 CCTTTCACTCCAACCAATCCAA 58.770 45.455 0.00 0.00 0.00 3.53
4918 5760 2.490718 CCCTTTCACTCCAACCAATCCA 60.491 50.000 0.00 0.00 0.00 3.41
4919 5761 2.171003 CCCTTTCACTCCAACCAATCC 58.829 52.381 0.00 0.00 0.00 3.01
4920 5762 3.084786 CTCCCTTTCACTCCAACCAATC 58.915 50.000 0.00 0.00 0.00 2.67
4921 5763 2.716424 TCTCCCTTTCACTCCAACCAAT 59.284 45.455 0.00 0.00 0.00 3.16
4969 5816 5.174395 ACACCAGATTCATCTTCTCTTTCG 58.826 41.667 0.00 0.00 34.22 3.46
4984 5832 2.779430 TCATCCATGGCTTACACCAGAT 59.221 45.455 6.96 0.00 44.71 2.90
5016 6174 7.201956 GCTCAAGATCTTTCTTCCCTACTATCA 60.202 40.741 4.86 0.00 40.28 2.15
5017 6175 7.151976 GCTCAAGATCTTTCTTCCCTACTATC 58.848 42.308 4.86 0.00 40.28 2.08
5018 6176 6.613271 TGCTCAAGATCTTTCTTCCCTACTAT 59.387 38.462 4.86 0.00 40.28 2.12
5019 6177 5.958380 TGCTCAAGATCTTTCTTCCCTACTA 59.042 40.000 4.86 0.00 40.28 1.82
5020 6178 4.780021 TGCTCAAGATCTTTCTTCCCTACT 59.220 41.667 4.86 0.00 40.28 2.57
5073 6231 5.121811 ACCAGATGCTGCTAGATTTAACTG 58.878 41.667 0.00 0.00 0.00 3.16
5184 6342 0.893727 CACCAGTGCCCTACCCAAAC 60.894 60.000 0.00 0.00 0.00 2.93
5302 6836 1.066143 CCACACCAGCCTAACCACTAG 60.066 57.143 0.00 0.00 0.00 2.57
5372 6909 2.338785 GCTCCTTCCTTGCACTGGC 61.339 63.158 0.00 0.00 41.68 4.85
5379 6916 0.540923 CTCCCTCTGCTCCTTCCTTG 59.459 60.000 0.00 0.00 0.00 3.61
5399 6936 0.954452 GCCAGTGGACTTTGACCAAG 59.046 55.000 15.20 0.00 39.22 3.61
5453 6998 5.691896 ACACCTCCTATATAAAAGGCAACC 58.308 41.667 9.13 0.00 33.84 3.77
5526 7073 8.891671 ATGTAGTTGTGCAAAGAAAAATCAAT 57.108 26.923 0.00 0.00 0.00 2.57
5527 7074 9.462174 CTATGTAGTTGTGCAAAGAAAAATCAA 57.538 29.630 0.00 0.00 0.00 2.57
5580 7133 6.263168 CCTCATATGCGGAGTAAAAGGAAAAT 59.737 38.462 5.78 0.00 0.00 1.82
5581 7134 5.588648 CCTCATATGCGGAGTAAAAGGAAAA 59.411 40.000 5.78 0.00 0.00 2.29
5595 7149 1.934589 TCGGACAAACCTCATATGCG 58.065 50.000 0.00 0.00 36.31 4.73
5602 7156 3.203716 AGTTTCACTTCGGACAAACCTC 58.796 45.455 0.00 0.00 36.31 3.85
5604 7158 3.948851 GAAGTTTCACTTCGGACAAACC 58.051 45.455 0.98 0.00 44.22 3.27
5781 7336 2.939103 GACATGCACACATACTCCTTCC 59.061 50.000 0.00 0.00 33.67 3.46
5783 7338 2.621338 CGACATGCACACATACTCCTT 58.379 47.619 0.00 0.00 33.67 3.36
5830 7386 3.717294 AGCGAAGGCACCGGGATT 61.717 61.111 6.32 0.00 43.41 3.01
5848 7404 4.586421 ACCCTAACCTAAACTACTATCCGC 59.414 45.833 0.00 0.00 0.00 5.54
5917 7475 3.184581 CCGAAAGACAAACTCGAAGAAGG 59.815 47.826 0.00 0.00 34.09 3.46
5944 7502 8.524567 CCATATGGACAAACTCGATAAGGATCG 61.525 44.444 17.49 0.91 46.40 3.69
5971 7529 0.456221 CGAAGCTCCACCGACTATGT 59.544 55.000 0.00 0.00 0.00 2.29
5973 7531 2.017559 GCCGAAGCTCCACCGACTAT 62.018 60.000 0.00 0.00 35.50 2.12
5994 7552 2.744202 CCAAGAAGACGGTGGAAATCTG 59.256 50.000 0.00 0.00 34.05 2.90
6003 7561 0.541863 CATAGCCCCAAGAAGACGGT 59.458 55.000 0.00 0.00 0.00 4.83
6006 7564 1.840635 ACCTCATAGCCCCAAGAAGAC 59.159 52.381 0.00 0.00 0.00 3.01
6014 7572 1.519498 AACCCTAACCTCATAGCCCC 58.481 55.000 0.00 0.00 0.00 5.80
6019 7577 6.781014 ACATATCGAGAAACCCTAACCTCATA 59.219 38.462 0.00 0.00 0.00 2.15
6020 7578 5.602978 ACATATCGAGAAACCCTAACCTCAT 59.397 40.000 0.00 0.00 0.00 2.90
6024 7582 4.100498 TCCACATATCGAGAAACCCTAACC 59.900 45.833 0.00 0.00 0.00 2.85
6028 7586 3.133003 CACTCCACATATCGAGAAACCCT 59.867 47.826 0.00 0.00 0.00 4.34
6029 7587 3.132289 TCACTCCACATATCGAGAAACCC 59.868 47.826 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.