Multiple sequence alignment - TraesCS5D01G002500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G002500 chr5D 100.000 4850 0 0 1 4850 2662174 2667023 0.000000e+00 8957.0
1 TraesCS5D01G002500 chr5D 83.085 201 28 6 4348 4545 2667511 2667314 1.390000e-40 178.0
2 TraesCS5D01G002500 chr5D 92.857 70 4 1 4779 4848 398323455 398323387 3.090000e-17 100.0
3 TraesCS5D01G002500 chr5D 92.453 53 4 0 4127 4179 308353411 308353463 5.210000e-10 76.8
4 TraesCS5D01G002500 chr5A 93.262 4215 178 42 1 4161 2124849 2120687 0.000000e+00 6113.0
5 TraesCS5D01G002500 chr5B 96.499 2771 80 8 7 2770 4550126 4547366 0.000000e+00 4564.0
6 TraesCS5D01G002500 chr5B 89.582 1363 74 30 2840 4161 4547369 4546034 0.000000e+00 1668.0
7 TraesCS5D01G002500 chr5B 93.182 44 3 0 4498 4541 501967586 501967543 1.130000e-06 65.8
8 TraesCS5D01G002500 chr3A 78.698 169 30 6 4376 4542 641560190 641560354 1.850000e-19 108.0
9 TraesCS5D01G002500 chr3B 88.889 81 9 0 4462 4542 663409634 663409714 3.090000e-17 100.0
10 TraesCS5D01G002500 chr3D 94.118 51 3 0 4129 4179 442798983 442799033 1.450000e-10 78.7
11 TraesCS5D01G002500 chr6A 87.500 64 8 0 4784 4847 52698291 52698228 1.870000e-09 75.0
12 TraesCS5D01G002500 chr7D 88.710 62 4 3 4129 4187 13006028 13006089 6.730000e-09 73.1
13 TraesCS5D01G002500 chr7A 88.710 62 4 3 4129 4187 12406463 12406524 6.730000e-09 73.1
14 TraesCS5D01G002500 chr6D 92.157 51 4 0 4129 4179 382078466 382078516 6.730000e-09 73.1
15 TraesCS5D01G002500 chr6D 89.796 49 5 0 4800 4848 41251177 41251225 4.050000e-06 63.9
16 TraesCS5D01G002500 chr1B 92.157 51 4 0 4129 4179 332136214 332136164 6.730000e-09 73.1
17 TraesCS5D01G002500 chr7B 91.071 56 0 3 4794 4848 649852180 649852129 2.420000e-08 71.3
18 TraesCS5D01G002500 chr2D 83.562 73 11 1 4775 4847 72444276 72444347 3.130000e-07 67.6
19 TraesCS5D01G002500 chr4B 86.667 60 6 1 4129 4186 550397170 550397111 1.130000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G002500 chr5D 2662174 2667023 4849 False 8957 8957 100.0000 1 4850 1 chr5D.!!$F1 4849
1 TraesCS5D01G002500 chr5A 2120687 2124849 4162 True 6113 6113 93.2620 1 4161 1 chr5A.!!$R1 4160
2 TraesCS5D01G002500 chr5B 4546034 4550126 4092 True 3116 4564 93.0405 7 4161 2 chr5B.!!$R2 4154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 222 0.250553 TACAAGGGAACGGTTGCAGG 60.251 55.0 14.40 5.35 0.00 4.85 F
358 360 0.322906 CTTCCTCTTCCCCTGGCAAC 60.323 60.0 0.00 0.00 0.00 4.17 F
516 519 0.881118 GGTTTGCTTTCCATCGCTGA 59.119 50.0 0.00 0.00 0.00 4.26 F
1023 1029 0.914644 ATAAGCTCAAGGGCTCTGCA 59.085 50.0 0.00 0.00 42.24 4.41 F
2049 2060 0.955428 TCAGGCGTGAATGAAGGTGC 60.955 55.0 6.64 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1561 1570 2.353704 CCTTATGTGGACGCTGTTCTGA 60.354 50.0 0.0 0.00 0.00 3.27 R
1635 1644 2.548480 CCCACGTTTCTCAAACTTCTCC 59.452 50.0 0.0 0.00 39.23 3.71 R
2435 2446 2.310052 AGAAACTGAAATGGGAGAGGGG 59.690 50.0 0.0 0.00 0.00 4.79 R
2599 2610 0.307146 GAAGCGAGCTCATCAATGGC 59.693 55.0 15.4 6.97 0.00 4.40 R
3986 4047 0.449388 GGCAAAGGCATCAAGAGACG 59.551 55.0 0.0 0.00 43.71 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.987413 CTGCCACAAAACTCGCAATA 57.013 45.000 0.00 0.00 0.00 1.90
172 174 1.405256 GCCGGAGATGCTGAGATATGG 60.405 57.143 5.05 0.00 0.00 2.74
188 190 4.532521 AGATATGGTATCTTGTGGTAGCCC 59.467 45.833 0.00 0.00 0.00 5.19
199 201 0.613572 TGGTAGCCCTCGATGTGTCA 60.614 55.000 0.00 0.00 0.00 3.58
203 205 2.604046 AGCCCTCGATGTGTCAATAC 57.396 50.000 0.00 0.00 0.00 1.89
214 216 2.105134 TGTGTCAATACAAGGGAACGGT 59.895 45.455 0.00 0.00 37.36 4.83
215 217 3.143728 GTGTCAATACAAGGGAACGGTT 58.856 45.455 0.00 0.00 37.36 4.44
216 218 3.058501 GTGTCAATACAAGGGAACGGTTG 60.059 47.826 0.00 0.00 37.36 3.77
217 219 2.095415 GTCAATACAAGGGAACGGTTGC 60.095 50.000 3.53 3.53 0.00 4.17
218 220 1.883275 CAATACAAGGGAACGGTTGCA 59.117 47.619 14.40 0.00 0.00 4.08
219 221 1.821216 ATACAAGGGAACGGTTGCAG 58.179 50.000 14.40 6.03 0.00 4.41
220 222 0.250553 TACAAGGGAACGGTTGCAGG 60.251 55.000 14.40 5.35 0.00 4.85
221 223 2.597510 AAGGGAACGGTTGCAGGC 60.598 61.111 14.40 0.00 0.00 4.85
306 308 0.602905 CTCTCCCGAAACAACCGCTT 60.603 55.000 0.00 0.00 0.00 4.68
313 315 1.734388 GAAACAACCGCTTGCCACCT 61.734 55.000 0.00 0.00 0.00 4.00
328 330 1.304547 ACCTGTCTCTCCTCCCACG 60.305 63.158 0.00 0.00 0.00 4.94
356 358 1.925455 CCTTCCTCTTCCCCTGGCA 60.925 63.158 0.00 0.00 0.00 4.92
358 360 0.322906 CTTCCTCTTCCCCTGGCAAC 60.323 60.000 0.00 0.00 0.00 4.17
410 413 3.838271 TGCCTCCGGATCTCGCAC 61.838 66.667 3.57 0.00 37.59 5.34
411 414 3.838271 GCCTCCGGATCTCGCACA 61.838 66.667 3.57 0.00 37.59 4.57
413 416 2.710902 CCTCCGGATCTCGCACACA 61.711 63.158 3.57 0.00 37.59 3.72
459 462 4.065281 CGTCCTCCTCCGCCGTTT 62.065 66.667 0.00 0.00 0.00 3.60
465 468 2.818274 CCTCCGCCGTTTGCCTAC 60.818 66.667 0.00 0.00 36.24 3.18
471 474 2.031465 CCGTTTGCCTACACCGGT 59.969 61.111 0.00 0.00 36.34 5.28
508 511 1.006220 CGGGCTTGGTTTGCTTTCC 60.006 57.895 0.00 0.00 0.00 3.13
513 516 1.701704 CTTGGTTTGCTTTCCATCGC 58.298 50.000 0.00 0.00 33.50 4.58
516 519 0.881118 GGTTTGCTTTCCATCGCTGA 59.119 50.000 0.00 0.00 0.00 4.26
672 678 8.237811 TCTATGTTAGCACTGATTGTATGAGA 57.762 34.615 0.00 0.00 0.00 3.27
677 683 8.668353 TGTTAGCACTGATTGTATGAGATTTTC 58.332 33.333 0.00 0.00 0.00 2.29
863 869 6.827727 ACTCTTTTACTTGCTCCTTTGACTA 58.172 36.000 0.00 0.00 0.00 2.59
924 930 5.179368 TGGCACGAATAGAACTTTTCTTGAG 59.821 40.000 12.63 0.00 41.14 3.02
954 960 2.027192 CACCCAAGATCTTCCCTTCGAA 60.027 50.000 4.57 0.00 0.00 3.71
963 969 8.897752 CAAGATCTTCCCTTCGAATCTTAATTT 58.102 33.333 4.57 0.00 31.09 1.82
972 978 7.010923 CCCTTCGAATCTTAATTTCTCACAGAG 59.989 40.741 0.00 0.00 0.00 3.35
1023 1029 0.914644 ATAAGCTCAAGGGCTCTGCA 59.085 50.000 0.00 0.00 42.24 4.41
1635 1644 2.357637 GGGAGTGATCAAGTCTCTCTCG 59.642 54.545 10.62 0.00 43.64 4.04
2045 2056 3.904136 AAAGTTCAGGCGTGAATGAAG 57.096 42.857 23.34 0.00 44.58 3.02
2049 2060 0.955428 TCAGGCGTGAATGAAGGTGC 60.955 55.000 6.64 0.00 0.00 5.01
2435 2446 8.332464 GTTTGGTTAGCTTTTGTGTAAATTTCC 58.668 33.333 0.00 0.00 0.00 3.13
2447 2458 3.600617 TGTAAATTTCCCCCTCTCCCATT 59.399 43.478 0.00 0.00 0.00 3.16
2613 2624 1.266175 CATTCGGCCATTGATGAGCTC 59.734 52.381 6.82 6.82 0.00 4.09
2652 2663 3.382227 ACAAACAAGGGAAAAAGTACCGG 59.618 43.478 0.00 0.00 0.00 5.28
2739 2750 0.035915 GGGAGGCAGAAGGTGAGTTC 60.036 60.000 0.00 0.00 0.00 3.01
2753 2764 5.426504 AGGTGAGTTCTTATGATTCTGCAG 58.573 41.667 7.63 7.63 0.00 4.41
2773 2784 8.406297 TCTGCAGAGTATTATACAGTTACTGTG 58.594 37.037 26.18 7.61 45.01 3.66
2774 2785 8.063200 TGCAGAGTATTATACAGTTACTGTGT 57.937 34.615 26.18 22.02 45.01 3.72
2791 2802 5.699839 ACTGTGTTGAACAACTCAAACTTC 58.300 37.500 18.31 0.00 45.67 3.01
2800 2811 8.600449 TGAACAACTCAAACTTCAACAAAAAT 57.400 26.923 0.00 0.00 0.00 1.82
2850 2861 9.435688 GATTGCAATATCTTTTTACCCAGTTTT 57.564 29.630 12.97 0.00 0.00 2.43
3150 3165 6.945072 AGTAGAAGTTGATTGAAACACGAAC 58.055 36.000 0.00 0.00 32.21 3.95
3160 3175 3.207778 TGAAACACGAACCCCTTTACTG 58.792 45.455 0.00 0.00 0.00 2.74
3165 3180 3.054655 ACACGAACCCCTTTACTGCATAT 60.055 43.478 0.00 0.00 0.00 1.78
3250 3267 2.046314 CCGTGGGTCGAGGCATTT 60.046 61.111 0.00 0.00 42.86 2.32
3251 3268 1.219664 CCGTGGGTCGAGGCATTTA 59.780 57.895 0.00 0.00 42.86 1.40
3262 3279 3.126858 TCGAGGCATTTATTGTTGAGCAC 59.873 43.478 0.00 0.00 0.00 4.40
3296 3313 0.324943 CTGAGTCGGTTGGGGATGTT 59.675 55.000 0.00 0.00 0.00 2.71
3440 3469 8.312564 TGATTCTATCTGATGGACATGATTCTC 58.687 37.037 2.93 0.00 0.00 2.87
3467 3498 7.682459 TGATTCTACCTATAATGGAGGGCATAA 59.318 37.037 0.00 0.00 38.52 1.90
3601 3632 6.690194 ATCATCCTCAGCTGAATGTTTAAC 57.310 37.500 22.02 0.00 0.00 2.01
3606 3637 1.135972 CAGCTGAATGTTTAACGCGCT 60.136 47.619 8.42 0.00 0.00 5.92
3615 3646 0.373370 TTTAACGCGCTGCTATGCTG 59.627 50.000 5.73 0.00 0.00 4.41
3678 3709 7.827819 TGCGCTGAATGTAAAGGTATATATC 57.172 36.000 9.73 0.00 0.00 1.63
3679 3710 6.530181 TGCGCTGAATGTAAAGGTATATATCG 59.470 38.462 9.73 0.00 0.00 2.92
3839 3884 2.202797 CGGGGTCGAGCAGTCATG 60.203 66.667 17.59 0.00 39.00 3.07
3856 3901 4.469227 AGTCATGCAAACTCTAGACTGGAT 59.531 41.667 0.00 0.00 35.24 3.41
3857 3902 5.658634 AGTCATGCAAACTCTAGACTGGATA 59.341 40.000 0.00 0.00 35.24 2.59
3860 3905 4.026744 TGCAAACTCTAGACTGGATAGCT 58.973 43.478 0.00 0.00 0.00 3.32
3918 3977 3.131326 TCGTGTACCGAAAGCATGG 57.869 52.632 4.28 0.00 44.03 3.66
3929 3988 4.176271 CCGAAAGCATGGGAATTTCTTTC 58.824 43.478 8.73 8.73 39.24 2.62
3969 4028 2.770164 ATAAGTGCTCCCAGACACAC 57.230 50.000 0.00 0.00 39.30 3.82
3986 4047 3.055819 ACACACATACTGGACTGGATGAC 60.056 47.826 8.21 0.00 0.00 3.06
4014 4085 2.166870 TGATGCCTTTGCCTAATGCTTG 59.833 45.455 0.00 0.00 42.00 4.01
4015 4086 1.631405 TGCCTTTGCCTAATGCTTGT 58.369 45.000 0.00 0.00 42.00 3.16
4016 4087 2.801483 TGCCTTTGCCTAATGCTTGTA 58.199 42.857 0.00 0.00 42.00 2.41
4017 4088 3.364549 TGCCTTTGCCTAATGCTTGTAT 58.635 40.909 0.00 0.00 42.00 2.29
4018 4089 3.381272 TGCCTTTGCCTAATGCTTGTATC 59.619 43.478 0.00 0.00 42.00 2.24
4019 4090 3.633986 GCCTTTGCCTAATGCTTGTATCT 59.366 43.478 0.00 0.00 42.00 1.98
4020 4091 4.261363 GCCTTTGCCTAATGCTTGTATCTC 60.261 45.833 0.00 0.00 42.00 2.75
4021 4092 4.024556 CCTTTGCCTAATGCTTGTATCTCG 60.025 45.833 0.00 0.00 42.00 4.04
4022 4093 3.819564 TGCCTAATGCTTGTATCTCGT 57.180 42.857 0.00 0.00 42.00 4.18
4023 4094 3.717707 TGCCTAATGCTTGTATCTCGTC 58.282 45.455 0.00 0.00 42.00 4.20
4024 4095 2.726760 GCCTAATGCTTGTATCTCGTCG 59.273 50.000 0.00 0.00 36.87 5.12
4025 4096 3.795826 GCCTAATGCTTGTATCTCGTCGT 60.796 47.826 0.00 0.00 36.87 4.34
4026 4097 4.360563 CCTAATGCTTGTATCTCGTCGTT 58.639 43.478 0.00 0.00 0.00 3.85
4072 4148 5.161943 AGTAAATAACACCAGTCCCAGTC 57.838 43.478 0.00 0.00 0.00 3.51
4073 4149 3.434940 AAATAACACCAGTCCCAGTCC 57.565 47.619 0.00 0.00 0.00 3.85
4075 4151 1.348064 TAACACCAGTCCCAGTCCAG 58.652 55.000 0.00 0.00 0.00 3.86
4076 4152 0.694444 AACACCAGTCCCAGTCCAGT 60.694 55.000 0.00 0.00 0.00 4.00
4077 4153 0.190069 ACACCAGTCCCAGTCCAGTA 59.810 55.000 0.00 0.00 0.00 2.74
4078 4154 1.203313 ACACCAGTCCCAGTCCAGTAT 60.203 52.381 0.00 0.00 0.00 2.12
4079 4155 2.043939 ACACCAGTCCCAGTCCAGTATA 59.956 50.000 0.00 0.00 0.00 1.47
4080 4156 3.309296 CACCAGTCCCAGTCCAGTATAT 58.691 50.000 0.00 0.00 0.00 0.86
4081 4157 4.078805 ACACCAGTCCCAGTCCAGTATATA 60.079 45.833 0.00 0.00 0.00 0.86
4082 4158 4.281182 CACCAGTCCCAGTCCAGTATATAC 59.719 50.000 4.60 4.60 0.00 1.47
4085 4161 5.946972 CCAGTCCCAGTCCAGTATATACTAG 59.053 48.000 15.03 8.48 34.13 2.57
4107 4184 5.539048 AGTAGTTCGATGTGCTACTTGTTT 58.461 37.500 11.28 0.00 41.62 2.83
4108 4185 5.989777 AGTAGTTCGATGTGCTACTTGTTTT 59.010 36.000 11.28 0.00 41.62 2.43
4109 4186 7.149973 AGTAGTTCGATGTGCTACTTGTTTTA 58.850 34.615 11.28 0.00 41.62 1.52
4111 4188 7.435068 AGTTCGATGTGCTACTTGTTTTATT 57.565 32.000 0.00 0.00 0.00 1.40
4112 4189 7.519002 AGTTCGATGTGCTACTTGTTTTATTC 58.481 34.615 0.00 0.00 0.00 1.75
4113 4190 7.172532 AGTTCGATGTGCTACTTGTTTTATTCA 59.827 33.333 0.00 0.00 0.00 2.57
4114 4191 7.060600 TCGATGTGCTACTTGTTTTATTCAG 57.939 36.000 0.00 0.00 0.00 3.02
4116 4193 6.738200 CGATGTGCTACTTGTTTTATTCAGTG 59.262 38.462 0.00 0.00 0.00 3.66
4117 4194 6.935741 TGTGCTACTTGTTTTATTCAGTGT 57.064 33.333 0.00 0.00 0.00 3.55
4118 4195 7.328277 TGTGCTACTTGTTTTATTCAGTGTT 57.672 32.000 0.00 0.00 0.00 3.32
4125 4203 8.911247 ACTTGTTTTATTCAGTGTTTGTTCTC 57.089 30.769 0.00 0.00 0.00 2.87
4127 4205 6.801575 TGTTTTATTCAGTGTTTGTTCTCCC 58.198 36.000 0.00 0.00 0.00 4.30
4132 4210 3.743521 TCAGTGTTTGTTCTCCCAGATG 58.256 45.455 0.00 0.00 0.00 2.90
4161 4239 7.028962 TCATTTTTATCCATTTCTGCGACAAG 58.971 34.615 0.00 0.00 0.00 3.16
4162 4240 5.957842 TTTTATCCATTTCTGCGACAAGT 57.042 34.783 0.00 0.00 0.00 3.16
4163 4241 7.441890 TTTTTATCCATTTCTGCGACAAGTA 57.558 32.000 0.00 0.00 0.00 2.24
4164 4242 7.441890 TTTTATCCATTTCTGCGACAAGTAA 57.558 32.000 0.00 0.00 0.00 2.24
4165 4243 7.624360 TTTATCCATTTCTGCGACAAGTAAT 57.376 32.000 0.00 0.00 0.00 1.89
4166 4244 7.624360 TTATCCATTTCTGCGACAAGTAATT 57.376 32.000 0.00 0.00 0.00 1.40
4167 4245 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
4168 4246 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
4169 4247 4.438744 CCATTTCTGCGACAAGTAATTCCC 60.439 45.833 0.00 0.00 0.00 3.97
4170 4248 2.004583 TCTGCGACAAGTAATTCCCG 57.995 50.000 0.00 0.00 0.00 5.14
4171 4249 1.546923 TCTGCGACAAGTAATTCCCGA 59.453 47.619 0.00 0.00 0.00 5.14
4172 4250 2.167693 TCTGCGACAAGTAATTCCCGAT 59.832 45.455 0.00 0.00 0.00 4.18
4173 4251 2.276201 TGCGACAAGTAATTCCCGATG 58.724 47.619 0.00 0.00 0.00 3.84
4174 4252 1.597663 GCGACAAGTAATTCCCGATGG 59.402 52.381 0.00 0.00 0.00 3.51
4175 4253 2.740580 GCGACAAGTAATTCCCGATGGA 60.741 50.000 0.00 0.00 39.54 3.41
4176 4254 3.123804 CGACAAGTAATTCCCGATGGAG 58.876 50.000 0.00 0.00 43.07 3.86
4177 4255 3.467803 GACAAGTAATTCCCGATGGAGG 58.532 50.000 0.00 0.00 43.07 4.30
4185 4263 2.910579 CCCGATGGAGGGTACAAGA 58.089 57.895 0.00 0.00 46.38 3.02
4186 4264 0.753262 CCCGATGGAGGGTACAAGAG 59.247 60.000 0.00 0.00 46.38 2.85
4187 4265 0.753262 CCGATGGAGGGTACAAGAGG 59.247 60.000 0.00 0.00 0.00 3.69
4188 4266 0.753262 CGATGGAGGGTACAAGAGGG 59.247 60.000 0.00 0.00 0.00 4.30
4189 4267 0.470341 GATGGAGGGTACAAGAGGGC 59.530 60.000 0.00 0.00 0.00 5.19
4190 4268 0.988678 ATGGAGGGTACAAGAGGGCC 60.989 60.000 0.00 0.00 0.00 5.80
4191 4269 1.307084 GGAGGGTACAAGAGGGCCT 60.307 63.158 5.25 5.25 0.00 5.19
4192 4270 1.627297 GGAGGGTACAAGAGGGCCTG 61.627 65.000 12.95 0.00 0.00 4.85
4193 4271 1.616628 AGGGTACAAGAGGGCCTGG 60.617 63.158 12.95 2.17 0.00 4.45
4194 4272 1.923909 GGGTACAAGAGGGCCTGGT 60.924 63.158 12.95 9.24 32.66 4.00
4195 4273 1.602771 GGTACAAGAGGGCCTGGTC 59.397 63.158 12.95 0.00 30.05 4.02
4196 4274 1.218316 GTACAAGAGGGCCTGGTCG 59.782 63.158 12.95 0.00 30.05 4.79
4197 4275 1.077805 TACAAGAGGGCCTGGTCGA 59.922 57.895 12.95 0.00 30.05 4.20
4198 4276 0.325296 TACAAGAGGGCCTGGTCGAT 60.325 55.000 12.95 0.00 30.05 3.59
4199 4277 1.153289 CAAGAGGGCCTGGTCGATG 60.153 63.158 12.95 0.00 0.00 3.84
4200 4278 1.613630 AAGAGGGCCTGGTCGATGT 60.614 57.895 12.95 0.00 0.00 3.06
4201 4279 1.617947 AAGAGGGCCTGGTCGATGTC 61.618 60.000 12.95 0.00 0.00 3.06
4202 4280 3.083997 AGGGCCTGGTCGATGTCC 61.084 66.667 4.50 0.00 0.00 4.02
4203 4281 3.399181 GGGCCTGGTCGATGTCCA 61.399 66.667 0.84 0.00 0.00 4.02
4204 4282 2.746375 GGGCCTGGTCGATGTCCAT 61.746 63.158 0.84 0.00 34.26 3.41
4205 4283 1.407656 GGGCCTGGTCGATGTCCATA 61.408 60.000 0.84 0.00 34.26 2.74
4206 4284 0.468226 GGCCTGGTCGATGTCCATAA 59.532 55.000 0.00 0.00 34.26 1.90
4207 4285 1.134220 GGCCTGGTCGATGTCCATAAA 60.134 52.381 0.00 0.00 34.26 1.40
4208 4286 2.213499 GCCTGGTCGATGTCCATAAAG 58.787 52.381 0.00 0.00 34.26 1.85
4209 4287 2.838736 CCTGGTCGATGTCCATAAAGG 58.161 52.381 0.00 0.00 34.26 3.11
4210 4288 2.170607 CCTGGTCGATGTCCATAAAGGT 59.829 50.000 0.00 0.00 39.02 3.50
4211 4289 3.458189 CTGGTCGATGTCCATAAAGGTC 58.542 50.000 0.00 0.00 39.02 3.85
4212 4290 2.169769 TGGTCGATGTCCATAAAGGTCC 59.830 50.000 0.00 0.00 39.02 4.46
4213 4291 2.434702 GGTCGATGTCCATAAAGGTCCT 59.565 50.000 0.00 0.00 39.02 3.85
4214 4292 3.492829 GGTCGATGTCCATAAAGGTCCTC 60.493 52.174 0.00 0.00 39.02 3.71
4215 4293 3.132289 GTCGATGTCCATAAAGGTCCTCA 59.868 47.826 0.00 0.00 39.02 3.86
4216 4294 3.772572 TCGATGTCCATAAAGGTCCTCAA 59.227 43.478 0.00 0.00 39.02 3.02
4217 4295 4.224147 TCGATGTCCATAAAGGTCCTCAAA 59.776 41.667 0.00 0.00 39.02 2.69
4218 4296 4.332819 CGATGTCCATAAAGGTCCTCAAAC 59.667 45.833 0.00 0.00 39.02 2.93
4219 4297 4.993705 TGTCCATAAAGGTCCTCAAACT 57.006 40.909 0.00 0.00 39.02 2.66
4220 4298 5.319043 TGTCCATAAAGGTCCTCAAACTT 57.681 39.130 0.00 0.00 39.02 2.66
4221 4299 6.442541 TGTCCATAAAGGTCCTCAAACTTA 57.557 37.500 0.00 0.00 39.02 2.24
4222 4300 6.472887 TGTCCATAAAGGTCCTCAAACTTAG 58.527 40.000 0.00 0.00 39.02 2.18
4223 4301 6.271391 TGTCCATAAAGGTCCTCAAACTTAGA 59.729 38.462 0.00 0.00 39.02 2.10
4224 4302 7.166167 GTCCATAAAGGTCCTCAAACTTAGAA 58.834 38.462 0.00 0.00 39.02 2.10
4225 4303 7.664318 GTCCATAAAGGTCCTCAAACTTAGAAA 59.336 37.037 0.00 0.00 39.02 2.52
4226 4304 7.664318 TCCATAAAGGTCCTCAAACTTAGAAAC 59.336 37.037 0.00 0.00 39.02 2.78
4227 4305 7.665974 CCATAAAGGTCCTCAAACTTAGAAACT 59.334 37.037 0.00 0.00 0.00 2.66
4228 4306 6.944234 AAAGGTCCTCAAACTTAGAAACTG 57.056 37.500 0.00 0.00 0.00 3.16
4229 4307 5.632034 AGGTCCTCAAACTTAGAAACTGT 57.368 39.130 0.00 0.00 0.00 3.55
4230 4308 6.002653 AGGTCCTCAAACTTAGAAACTGTT 57.997 37.500 0.00 0.00 0.00 3.16
4231 4309 6.424032 AGGTCCTCAAACTTAGAAACTGTTT 58.576 36.000 5.29 5.29 34.69 2.83
4232 4310 6.542735 AGGTCCTCAAACTTAGAAACTGTTTC 59.457 38.462 22.40 22.40 39.96 2.78
4233 4311 6.317893 GGTCCTCAAACTTAGAAACTGTTTCA 59.682 38.462 28.99 15.70 42.10 2.69
4234 4312 7.148137 GGTCCTCAAACTTAGAAACTGTTTCAA 60.148 37.037 28.99 20.40 42.10 2.69
4235 4313 8.406297 GTCCTCAAACTTAGAAACTGTTTCAAT 58.594 33.333 28.99 15.69 42.10 2.57
4236 4314 9.621629 TCCTCAAACTTAGAAACTGTTTCAATA 57.378 29.630 28.99 14.80 42.10 1.90
4237 4315 9.665264 CCTCAAACTTAGAAACTGTTTCAATAC 57.335 33.333 28.99 8.16 42.10 1.89
4243 4321 9.574516 ACTTAGAAACTGTTTCAATACAATCCT 57.425 29.630 28.99 11.41 42.10 3.24
4244 4322 9.831737 CTTAGAAACTGTTTCAATACAATCCTG 57.168 33.333 28.99 7.95 42.10 3.86
4245 4323 7.219484 AGAAACTGTTTCAATACAATCCTGG 57.781 36.000 28.99 0.00 42.10 4.45
4246 4324 7.004086 AGAAACTGTTTCAATACAATCCTGGA 58.996 34.615 28.99 0.00 42.10 3.86
4247 4325 7.505585 AGAAACTGTTTCAATACAATCCTGGAA 59.494 33.333 28.99 0.00 42.10 3.53
4248 4326 6.575162 ACTGTTTCAATACAATCCTGGAAC 57.425 37.500 0.00 0.00 0.00 3.62
4249 4327 6.306987 ACTGTTTCAATACAATCCTGGAACT 58.693 36.000 0.00 0.00 0.00 3.01
4250 4328 6.777580 ACTGTTTCAATACAATCCTGGAACTT 59.222 34.615 0.00 0.00 0.00 2.66
4251 4329 6.980593 TGTTTCAATACAATCCTGGAACTTG 58.019 36.000 0.00 4.36 0.00 3.16
4252 4330 5.643379 TTCAATACAATCCTGGAACTTGC 57.357 39.130 0.00 0.00 0.00 4.01
4253 4331 4.016444 TCAATACAATCCTGGAACTTGCC 58.984 43.478 0.00 0.00 0.00 4.52
4254 4332 4.019174 CAATACAATCCTGGAACTTGCCT 58.981 43.478 0.00 0.00 0.00 4.75
4255 4333 2.683211 ACAATCCTGGAACTTGCCTT 57.317 45.000 0.00 0.00 0.00 4.35
4256 4334 3.806949 ACAATCCTGGAACTTGCCTTA 57.193 42.857 0.00 0.00 0.00 2.69
4257 4335 4.112634 ACAATCCTGGAACTTGCCTTAA 57.887 40.909 0.00 0.00 0.00 1.85
4258 4336 4.677182 ACAATCCTGGAACTTGCCTTAAT 58.323 39.130 0.00 0.00 0.00 1.40
4259 4337 5.826643 ACAATCCTGGAACTTGCCTTAATA 58.173 37.500 0.00 0.00 0.00 0.98
4260 4338 5.652452 ACAATCCTGGAACTTGCCTTAATAC 59.348 40.000 0.00 0.00 0.00 1.89
4261 4339 3.869065 TCCTGGAACTTGCCTTAATACG 58.131 45.455 0.00 0.00 0.00 3.06
4262 4340 3.516300 TCCTGGAACTTGCCTTAATACGA 59.484 43.478 0.00 0.00 0.00 3.43
4263 4341 4.163458 TCCTGGAACTTGCCTTAATACGAT 59.837 41.667 0.00 0.00 0.00 3.73
4264 4342 4.511826 CCTGGAACTTGCCTTAATACGATC 59.488 45.833 0.00 0.00 0.00 3.69
4265 4343 4.448210 TGGAACTTGCCTTAATACGATCC 58.552 43.478 0.00 0.00 0.00 3.36
4266 4344 4.163458 TGGAACTTGCCTTAATACGATCCT 59.837 41.667 0.00 0.00 0.00 3.24
4267 4345 5.123936 GGAACTTGCCTTAATACGATCCTT 58.876 41.667 0.00 0.00 0.00 3.36
4268 4346 5.007724 GGAACTTGCCTTAATACGATCCTTG 59.992 44.000 0.00 0.00 0.00 3.61
4269 4347 5.353394 ACTTGCCTTAATACGATCCTTGA 57.647 39.130 0.00 0.00 0.00 3.02
4270 4348 5.741011 ACTTGCCTTAATACGATCCTTGAA 58.259 37.500 0.00 0.00 0.00 2.69
4271 4349 5.585047 ACTTGCCTTAATACGATCCTTGAAC 59.415 40.000 0.00 0.00 0.00 3.18
4272 4350 5.353394 TGCCTTAATACGATCCTTGAACT 57.647 39.130 0.00 0.00 0.00 3.01
4273 4351 5.741011 TGCCTTAATACGATCCTTGAACTT 58.259 37.500 0.00 0.00 0.00 2.66
4274 4352 5.584649 TGCCTTAATACGATCCTTGAACTTG 59.415 40.000 0.00 0.00 0.00 3.16
4275 4353 5.007724 GCCTTAATACGATCCTTGAACTTGG 59.992 44.000 0.00 0.00 0.00 3.61
4276 4354 6.113411 CCTTAATACGATCCTTGAACTTGGT 58.887 40.000 0.00 0.00 0.00 3.67
4277 4355 6.037172 CCTTAATACGATCCTTGAACTTGGTG 59.963 42.308 0.00 0.00 0.00 4.17
4278 4356 4.819105 ATACGATCCTTGAACTTGGTGA 57.181 40.909 0.00 0.00 0.00 4.02
4279 4357 3.485463 ACGATCCTTGAACTTGGTGAA 57.515 42.857 0.00 0.00 0.00 3.18
4280 4358 3.139077 ACGATCCTTGAACTTGGTGAAC 58.861 45.455 0.00 0.00 0.00 3.18
4281 4359 2.484264 CGATCCTTGAACTTGGTGAACC 59.516 50.000 0.00 0.00 0.00 3.62
4282 4360 1.961793 TCCTTGAACTTGGTGAACCG 58.038 50.000 0.00 0.00 39.43 4.44
4283 4361 0.951558 CCTTGAACTTGGTGAACCGG 59.048 55.000 0.00 0.00 39.43 5.28
4284 4362 1.675552 CTTGAACTTGGTGAACCGGT 58.324 50.000 0.00 0.00 39.43 5.28
4285 4363 1.602377 CTTGAACTTGGTGAACCGGTC 59.398 52.381 8.04 1.72 39.43 4.79
4286 4364 0.179040 TGAACTTGGTGAACCGGTCC 60.179 55.000 8.04 5.52 39.43 4.46
4287 4365 0.108019 GAACTTGGTGAACCGGTCCT 59.892 55.000 8.04 0.00 39.43 3.85
4288 4366 0.108019 AACTTGGTGAACCGGTCCTC 59.892 55.000 8.04 2.68 39.43 3.71
4289 4367 0.763223 ACTTGGTGAACCGGTCCTCT 60.763 55.000 8.04 0.00 39.43 3.69
4290 4368 0.320771 CTTGGTGAACCGGTCCTCTG 60.321 60.000 8.04 0.00 39.43 3.35
4291 4369 0.761323 TTGGTGAACCGGTCCTCTGA 60.761 55.000 8.04 0.00 39.43 3.27
4292 4370 0.544357 TGGTGAACCGGTCCTCTGAT 60.544 55.000 8.04 0.00 39.43 2.90
4293 4371 0.108138 GGTGAACCGGTCCTCTGATG 60.108 60.000 8.04 0.00 0.00 3.07
4294 4372 0.608640 GTGAACCGGTCCTCTGATGT 59.391 55.000 8.04 0.00 0.00 3.06
4295 4373 1.822990 GTGAACCGGTCCTCTGATGTA 59.177 52.381 8.04 0.00 0.00 2.29
4296 4374 2.431057 GTGAACCGGTCCTCTGATGTAT 59.569 50.000 8.04 0.00 0.00 2.29
4297 4375 3.635373 GTGAACCGGTCCTCTGATGTATA 59.365 47.826 8.04 0.00 0.00 1.47
4298 4376 3.635373 TGAACCGGTCCTCTGATGTATAC 59.365 47.826 8.04 0.00 0.00 1.47
4299 4377 3.308035 ACCGGTCCTCTGATGTATACA 57.692 47.619 8.27 8.27 0.00 2.29
4300 4378 3.845860 ACCGGTCCTCTGATGTATACAT 58.154 45.455 18.31 18.31 39.70 2.29
4301 4379 3.574396 ACCGGTCCTCTGATGTATACATG 59.426 47.826 22.93 9.73 36.57 3.21
4302 4380 3.056536 CCGGTCCTCTGATGTATACATGG 60.057 52.174 22.93 16.66 36.57 3.66
4303 4381 3.056536 CGGTCCTCTGATGTATACATGGG 60.057 52.174 22.93 17.02 36.57 4.00
4304 4382 3.261897 GGTCCTCTGATGTATACATGGGG 59.738 52.174 22.93 17.69 36.57 4.96
4305 4383 3.904339 GTCCTCTGATGTATACATGGGGT 59.096 47.826 22.93 0.00 36.57 4.95
4306 4384 4.348168 GTCCTCTGATGTATACATGGGGTT 59.652 45.833 22.93 0.00 36.57 4.11
4307 4385 4.593206 TCCTCTGATGTATACATGGGGTTC 59.407 45.833 22.93 8.85 36.57 3.62
4308 4386 4.263068 CCTCTGATGTATACATGGGGTTCC 60.263 50.000 22.93 7.24 36.57 3.62
4309 4387 4.566837 TCTGATGTATACATGGGGTTCCT 58.433 43.478 22.93 0.00 36.57 3.36
4310 4388 5.722290 TCTGATGTATACATGGGGTTCCTA 58.278 41.667 22.93 0.00 36.57 2.94
4311 4389 6.331032 TCTGATGTATACATGGGGTTCCTAT 58.669 40.000 22.93 0.00 36.57 2.57
4312 4390 6.213397 TCTGATGTATACATGGGGTTCCTATG 59.787 42.308 22.93 8.45 36.57 2.23
4313 4391 5.849475 TGATGTATACATGGGGTTCCTATGT 59.151 40.000 22.93 17.64 37.95 2.29
4314 4392 7.020009 TGATGTATACATGGGGTTCCTATGTA 58.980 38.462 22.93 20.17 39.25 2.29
4315 4393 6.675413 TGTATACATGGGGTTCCTATGTAC 57.325 41.667 20.26 14.12 38.54 2.90
4316 4394 5.544948 TGTATACATGGGGTTCCTATGTACC 59.455 44.000 20.26 15.40 38.54 3.34
4323 4401 4.579647 GGGTTCCTATGTACCCTTTCAA 57.420 45.455 5.71 0.00 45.99 2.69
4324 4402 4.524053 GGGTTCCTATGTACCCTTTCAAG 58.476 47.826 5.71 0.00 45.99 3.02
4325 4403 3.945921 GGTTCCTATGTACCCTTTCAAGC 59.054 47.826 0.00 0.00 0.00 4.01
4326 4404 3.536956 TCCTATGTACCCTTTCAAGCG 57.463 47.619 0.00 0.00 0.00 4.68
4327 4405 3.101437 TCCTATGTACCCTTTCAAGCGA 58.899 45.455 0.00 0.00 0.00 4.93
4328 4406 3.709653 TCCTATGTACCCTTTCAAGCGAT 59.290 43.478 0.00 0.00 0.00 4.58
4329 4407 4.163458 TCCTATGTACCCTTTCAAGCGATT 59.837 41.667 0.00 0.00 0.00 3.34
4330 4408 4.881850 CCTATGTACCCTTTCAAGCGATTT 59.118 41.667 0.00 0.00 0.00 2.17
4331 4409 5.357032 CCTATGTACCCTTTCAAGCGATTTT 59.643 40.000 0.00 0.00 0.00 1.82
4332 4410 5.722021 ATGTACCCTTTCAAGCGATTTTT 57.278 34.783 0.00 0.00 0.00 1.94
4333 4411 6.827586 ATGTACCCTTTCAAGCGATTTTTA 57.172 33.333 0.00 0.00 0.00 1.52
4334 4412 6.827586 TGTACCCTTTCAAGCGATTTTTAT 57.172 33.333 0.00 0.00 0.00 1.40
4335 4413 6.848451 TGTACCCTTTCAAGCGATTTTTATC 58.152 36.000 0.00 0.00 0.00 1.75
4336 4414 4.981794 ACCCTTTCAAGCGATTTTTATCG 58.018 39.130 3.33 3.33 45.99 2.92
4337 4415 4.457949 ACCCTTTCAAGCGATTTTTATCGT 59.542 37.500 9.02 0.00 45.11 3.73
4338 4416 5.048294 ACCCTTTCAAGCGATTTTTATCGTT 60.048 36.000 9.02 0.63 45.11 3.85
4339 4417 6.149807 ACCCTTTCAAGCGATTTTTATCGTTA 59.850 34.615 9.02 0.00 45.11 3.18
4340 4418 6.687105 CCCTTTCAAGCGATTTTTATCGTTAG 59.313 38.462 9.02 0.00 45.11 2.34
4341 4419 7.241376 CCTTTCAAGCGATTTTTATCGTTAGT 58.759 34.615 9.02 0.00 45.11 2.24
4342 4420 7.749126 CCTTTCAAGCGATTTTTATCGTTAGTT 59.251 33.333 9.02 0.00 45.11 2.24
4343 4421 8.649810 TTTCAAGCGATTTTTATCGTTAGTTC 57.350 30.769 9.02 0.00 45.11 3.01
4344 4422 7.591006 TCAAGCGATTTTTATCGTTAGTTCT 57.409 32.000 9.02 0.00 45.11 3.01
4345 4423 8.692110 TCAAGCGATTTTTATCGTTAGTTCTA 57.308 30.769 9.02 0.00 45.11 2.10
4346 4424 8.589629 TCAAGCGATTTTTATCGTTAGTTCTAC 58.410 33.333 9.02 0.00 45.11 2.59
4347 4425 8.377681 CAAGCGATTTTTATCGTTAGTTCTACA 58.622 33.333 9.02 0.00 45.11 2.74
4348 4426 7.892803 AGCGATTTTTATCGTTAGTTCTACAC 58.107 34.615 9.02 0.00 45.11 2.90
4349 4427 7.543172 AGCGATTTTTATCGTTAGTTCTACACA 59.457 33.333 9.02 0.00 45.11 3.72
4350 4428 8.325997 GCGATTTTTATCGTTAGTTCTACACAT 58.674 33.333 9.02 0.00 45.11 3.21
4351 4429 9.619727 CGATTTTTATCGTTAGTTCTACACATG 57.380 33.333 0.00 0.00 39.07 3.21
4352 4430 9.422196 GATTTTTATCGTTAGTTCTACACATGC 57.578 33.333 0.00 0.00 0.00 4.06
4353 4431 8.542497 TTTTTATCGTTAGTTCTACACATGCT 57.458 30.769 0.00 0.00 0.00 3.79
4354 4432 7.520119 TTTATCGTTAGTTCTACACATGCTG 57.480 36.000 0.00 0.00 0.00 4.41
4355 4433 3.250744 TCGTTAGTTCTACACATGCTGC 58.749 45.455 0.00 0.00 0.00 5.25
4356 4434 3.056821 TCGTTAGTTCTACACATGCTGCT 60.057 43.478 0.00 0.00 0.00 4.24
4357 4435 3.304559 CGTTAGTTCTACACATGCTGCTC 59.695 47.826 0.00 0.00 0.00 4.26
4358 4436 2.393271 AGTTCTACACATGCTGCTCC 57.607 50.000 0.00 0.00 0.00 4.70
4359 4437 1.905215 AGTTCTACACATGCTGCTCCT 59.095 47.619 0.00 0.00 0.00 3.69
4360 4438 3.099905 AGTTCTACACATGCTGCTCCTA 58.900 45.455 0.00 0.00 0.00 2.94
4361 4439 3.708631 AGTTCTACACATGCTGCTCCTAT 59.291 43.478 0.00 0.00 0.00 2.57
4362 4440 4.895889 AGTTCTACACATGCTGCTCCTATA 59.104 41.667 0.00 0.00 0.00 1.31
4363 4441 5.010516 AGTTCTACACATGCTGCTCCTATAG 59.989 44.000 0.00 0.00 0.00 1.31
4364 4442 3.829026 TCTACACATGCTGCTCCTATAGG 59.171 47.826 13.07 13.07 0.00 2.57
4365 4443 1.071385 ACACATGCTGCTCCTATAGGC 59.929 52.381 14.50 3.94 34.44 3.93
4366 4444 1.071228 CACATGCTGCTCCTATAGGCA 59.929 52.381 14.50 8.43 37.32 4.75
4367 4445 1.071385 ACATGCTGCTCCTATAGGCAC 59.929 52.381 14.50 8.77 35.72 5.01
4368 4446 0.319728 ATGCTGCTCCTATAGGCACG 59.680 55.000 14.50 6.09 35.72 5.34
4369 4447 1.666234 GCTGCTCCTATAGGCACGC 60.666 63.158 14.50 15.52 34.57 5.34
4370 4448 1.742146 CTGCTCCTATAGGCACGCA 59.258 57.895 21.29 21.29 34.57 5.24
4371 4449 0.598680 CTGCTCCTATAGGCACGCAC 60.599 60.000 19.74 6.06 34.57 5.34
4372 4450 1.326951 TGCTCCTATAGGCACGCACA 61.327 55.000 19.74 8.06 33.23 4.57
4373 4451 0.034059 GCTCCTATAGGCACGCACAT 59.966 55.000 14.50 0.00 34.44 3.21
4374 4452 1.788258 CTCCTATAGGCACGCACATG 58.212 55.000 14.50 0.00 34.44 3.21
4375 4453 1.069204 CTCCTATAGGCACGCACATGT 59.931 52.381 14.50 0.00 34.44 3.21
4376 4454 1.484653 TCCTATAGGCACGCACATGTT 59.515 47.619 14.50 0.00 34.44 2.71
4377 4455 2.093181 TCCTATAGGCACGCACATGTTT 60.093 45.455 14.50 0.00 34.44 2.83
4378 4456 2.287915 CCTATAGGCACGCACATGTTTC 59.712 50.000 5.67 0.00 0.00 2.78
4379 4457 2.113860 ATAGGCACGCACATGTTTCT 57.886 45.000 0.00 0.00 0.00 2.52
4380 4458 1.890876 TAGGCACGCACATGTTTCTT 58.109 45.000 0.00 0.00 0.00 2.52
4381 4459 0.593128 AGGCACGCACATGTTTCTTC 59.407 50.000 0.00 0.00 0.00 2.87
4382 4460 0.593128 GGCACGCACATGTTTCTTCT 59.407 50.000 0.00 0.00 0.00 2.85
4383 4461 1.001378 GGCACGCACATGTTTCTTCTT 60.001 47.619 0.00 0.00 0.00 2.52
4384 4462 2.543653 GGCACGCACATGTTTCTTCTTT 60.544 45.455 0.00 0.00 0.00 2.52
4385 4463 3.115554 GCACGCACATGTTTCTTCTTTT 58.884 40.909 0.00 0.00 0.00 2.27
4386 4464 3.551485 GCACGCACATGTTTCTTCTTTTT 59.449 39.130 0.00 0.00 0.00 1.94
4480 4558 9.877178 TTAAAGTTGCCATAAAACTTGAAGAAA 57.123 25.926 0.00 0.00 44.93 2.52
4481 4559 8.424274 AAAGTTGCCATAAAACTTGAAGAAAG 57.576 30.769 0.00 0.00 44.93 2.62
4494 4572 6.651755 CTTGAAGAAAGTGTTTGTGCATTT 57.348 33.333 0.00 0.00 0.00 2.32
4495 4573 6.406093 TTGAAGAAAGTGTTTGTGCATTTG 57.594 33.333 0.00 0.00 0.00 2.32
4496 4574 5.718146 TGAAGAAAGTGTTTGTGCATTTGA 58.282 33.333 0.00 0.00 0.00 2.69
4497 4575 6.162079 TGAAGAAAGTGTTTGTGCATTTGAA 58.838 32.000 0.00 0.00 0.00 2.69
4498 4576 6.648310 TGAAGAAAGTGTTTGTGCATTTGAAA 59.352 30.769 0.00 0.00 0.00 2.69
4499 4577 7.172190 TGAAGAAAGTGTTTGTGCATTTGAAAA 59.828 29.630 0.00 0.00 0.00 2.29
4500 4578 7.432350 AGAAAGTGTTTGTGCATTTGAAAAA 57.568 28.000 0.00 0.00 0.00 1.94
4527 4605 9.737844 AATGGTTAGCATATTTTTGGAAAATGT 57.262 25.926 0.00 0.30 0.00 2.71
4528 4606 9.737844 ATGGTTAGCATATTTTTGGAAAATGTT 57.262 25.926 8.48 0.00 0.00 2.71
4529 4607 9.566432 TGGTTAGCATATTTTTGGAAAATGTTT 57.434 25.926 8.48 0.00 0.00 2.83
4533 4611 7.795859 AGCATATTTTTGGAAAATGTTTCACG 58.204 30.769 8.48 0.00 0.00 4.35
4534 4612 7.440856 AGCATATTTTTGGAAAATGTTTCACGT 59.559 29.630 8.48 0.00 0.00 4.49
4535 4613 7.530190 GCATATTTTTGGAAAATGTTTCACGTG 59.470 33.333 9.94 9.94 0.00 4.49
4536 4614 6.976636 ATTTTTGGAAAATGTTTCACGTGT 57.023 29.167 16.51 0.00 0.00 4.49
4537 4615 9.751542 ATATTTTTGGAAAATGTTTCACGTGTA 57.248 25.926 16.51 2.27 0.00 2.90
4538 4616 8.655651 ATTTTTGGAAAATGTTTCACGTGTAT 57.344 26.923 16.51 3.65 0.00 2.29
4539 4617 8.480643 TTTTTGGAAAATGTTTCACGTGTATT 57.519 26.923 16.51 9.43 0.00 1.89
4540 4618 9.582431 TTTTTGGAAAATGTTTCACGTGTATTA 57.418 25.926 16.51 1.60 0.00 0.98
4541 4619 9.582431 TTTTGGAAAATGTTTCACGTGTATTAA 57.418 25.926 16.51 0.00 0.00 1.40
4542 4620 8.563289 TTGGAAAATGTTTCACGTGTATTAAC 57.437 30.769 16.51 15.02 0.00 2.01
4543 4621 7.704271 TGGAAAATGTTTCACGTGTATTAACA 58.296 30.769 16.51 19.45 33.73 2.41
4544 4622 8.188799 TGGAAAATGTTTCACGTGTATTAACAA 58.811 29.630 16.51 0.00 37.36 2.83
4545 4623 8.687301 GGAAAATGTTTCACGTGTATTAACAAG 58.313 33.333 16.51 0.00 40.48 3.16
4546 4624 7.617533 AAATGTTTCACGTGTATTAACAAGC 57.382 32.000 16.51 3.19 38.50 4.01
4547 4625 5.994887 TGTTTCACGTGTATTAACAAGCT 57.005 34.783 16.51 0.00 38.50 3.74
4548 4626 5.743467 TGTTTCACGTGTATTAACAAGCTG 58.257 37.500 16.51 0.00 38.50 4.24
4549 4627 5.294799 TGTTTCACGTGTATTAACAAGCTGT 59.705 36.000 16.51 0.00 38.50 4.40
4550 4628 6.479331 TGTTTCACGTGTATTAACAAGCTGTA 59.521 34.615 16.51 0.00 38.50 2.74
4551 4629 7.011202 TGTTTCACGTGTATTAACAAGCTGTAA 59.989 33.333 16.51 0.00 38.50 2.41
4552 4630 6.699895 TCACGTGTATTAACAAGCTGTAAG 57.300 37.500 16.51 0.00 38.50 2.34
4576 4654 8.638685 AGCATGTTTTTCATAGACATTATTGC 57.361 30.769 0.00 0.00 34.67 3.56
4577 4655 7.433131 AGCATGTTTTTCATAGACATTATTGCG 59.567 33.333 0.00 0.00 33.29 4.85
4578 4656 7.220683 GCATGTTTTTCATAGACATTATTGCGT 59.779 33.333 0.00 0.00 34.67 5.24
4579 4657 9.715123 CATGTTTTTCATAGACATTATTGCGTA 57.285 29.630 0.00 0.00 34.67 4.42
4580 4658 9.716507 ATGTTTTTCATAGACATTATTGCGTAC 57.283 29.630 0.00 0.00 34.67 3.67
4581 4659 8.722394 TGTTTTTCATAGACATTATTGCGTACA 58.278 29.630 0.00 0.00 0.00 2.90
4582 4660 9.716507 GTTTTTCATAGACATTATTGCGTACAT 57.283 29.630 0.00 0.00 0.00 2.29
4600 4678 9.203421 TGCGTACATTTATGTATCTTCATTAGG 57.797 33.333 5.92 0.00 44.25 2.69
4601 4679 8.656849 GCGTACATTTATGTATCTTCATTAGGG 58.343 37.037 5.92 0.00 44.25 3.53
4602 4680 9.923143 CGTACATTTATGTATCTTCATTAGGGA 57.077 33.333 5.92 0.00 44.25 4.20
4605 4683 8.723365 ACATTTATGTATCTTCATTAGGGACCA 58.277 33.333 0.00 0.00 39.68 4.02
4606 4684 9.003658 CATTTATGTATCTTCATTAGGGACCAC 57.996 37.037 0.00 0.00 0.00 4.16
4607 4685 7.684317 TTATGTATCTTCATTAGGGACCACA 57.316 36.000 0.00 0.00 0.00 4.17
4608 4686 6.575244 ATGTATCTTCATTAGGGACCACAA 57.425 37.500 0.00 0.00 0.00 3.33
4609 4687 5.989477 TGTATCTTCATTAGGGACCACAAG 58.011 41.667 0.00 0.00 0.00 3.16
4610 4688 5.724370 TGTATCTTCATTAGGGACCACAAGA 59.276 40.000 0.00 0.00 0.00 3.02
4611 4689 5.779241 ATCTTCATTAGGGACCACAAGAA 57.221 39.130 0.00 0.00 0.00 2.52
4612 4690 4.906618 TCTTCATTAGGGACCACAAGAAC 58.093 43.478 0.00 0.00 0.00 3.01
4613 4691 3.328382 TCATTAGGGACCACAAGAACG 57.672 47.619 0.00 0.00 0.00 3.95
4614 4692 1.737793 CATTAGGGACCACAAGAACGC 59.262 52.381 0.00 0.00 0.00 4.84
4615 4693 0.759959 TTAGGGACCACAAGAACGCA 59.240 50.000 0.00 0.00 0.00 5.24
4616 4694 0.034337 TAGGGACCACAAGAACGCAC 59.966 55.000 0.00 0.00 0.00 5.34
4617 4695 1.525077 GGGACCACAAGAACGCACA 60.525 57.895 0.00 0.00 0.00 4.57
4618 4696 1.098712 GGGACCACAAGAACGCACAA 61.099 55.000 0.00 0.00 0.00 3.33
4619 4697 0.951558 GGACCACAAGAACGCACAAT 59.048 50.000 0.00 0.00 0.00 2.71
4620 4698 1.336755 GGACCACAAGAACGCACAATT 59.663 47.619 0.00 0.00 0.00 2.32
4621 4699 2.550606 GGACCACAAGAACGCACAATTA 59.449 45.455 0.00 0.00 0.00 1.40
4622 4700 3.364964 GGACCACAAGAACGCACAATTAG 60.365 47.826 0.00 0.00 0.00 1.73
4623 4701 3.211045 ACCACAAGAACGCACAATTAGT 58.789 40.909 0.00 0.00 0.00 2.24
4641 4719 9.555727 ACAATTAGTGTGTGTCTTACTTGTATT 57.444 29.630 0.00 0.00 39.72 1.89
4643 4721 9.998106 AATTAGTGTGTGTCTTACTTGTATTCT 57.002 29.630 0.00 0.00 0.00 2.40
4644 4722 9.998106 ATTAGTGTGTGTCTTACTTGTATTCTT 57.002 29.630 0.00 0.00 0.00 2.52
4647 4725 9.826574 AGTGTGTGTCTTACTTGTATTCTTAAA 57.173 29.630 0.00 0.00 0.00 1.52
4685 4763 9.875675 TTAATTGACAGCATTGCATTTTTAAAC 57.124 25.926 11.91 0.00 0.00 2.01
4686 4764 7.733402 ATTGACAGCATTGCATTTTTAAACT 57.267 28.000 11.91 0.00 0.00 2.66
4687 4765 7.551035 TTGACAGCATTGCATTTTTAAACTT 57.449 28.000 11.91 0.00 0.00 2.66
4688 4766 7.551035 TGACAGCATTGCATTTTTAAACTTT 57.449 28.000 11.91 0.00 0.00 2.66
4689 4767 7.983307 TGACAGCATTGCATTTTTAAACTTTT 58.017 26.923 11.91 0.00 0.00 2.27
4690 4768 8.121708 TGACAGCATTGCATTTTTAAACTTTTC 58.878 29.630 11.91 0.00 0.00 2.29
4691 4769 7.983307 ACAGCATTGCATTTTTAAACTTTTCA 58.017 26.923 11.91 0.00 0.00 2.69
4692 4770 8.457261 ACAGCATTGCATTTTTAAACTTTTCAA 58.543 25.926 11.91 0.00 0.00 2.69
4693 4771 8.949953 CAGCATTGCATTTTTAAACTTTTCAAG 58.050 29.630 11.91 0.00 0.00 3.02
4694 4772 8.130469 AGCATTGCATTTTTAAACTTTTCAAGG 58.870 29.630 11.91 0.00 0.00 3.61
4695 4773 7.914871 GCATTGCATTTTTAAACTTTTCAAGGT 59.085 29.630 3.15 0.00 0.00 3.50
4696 4774 9.224058 CATTGCATTTTTAAACTTTTCAAGGTG 57.776 29.630 0.00 0.00 0.00 4.00
4697 4775 7.913674 TGCATTTTTAAACTTTTCAAGGTGT 57.086 28.000 0.00 0.00 0.00 4.16
4698 4776 9.436957 TTGCATTTTTAAACTTTTCAAGGTGTA 57.563 25.926 0.00 0.00 0.00 2.90
4699 4777 9.606631 TGCATTTTTAAACTTTTCAAGGTGTAT 57.393 25.926 0.00 0.00 0.00 2.29
4718 4796 9.303116 AGGTGTATTCAAAATTATTGTGTACCA 57.697 29.630 0.00 0.00 0.00 3.25
4719 4797 9.915629 GGTGTATTCAAAATTATTGTGTACCAA 57.084 29.630 0.00 0.00 37.49 3.67
4760 4838 9.685828 AATGTATTTAAACATGTTAAACGTGCT 57.314 25.926 12.39 0.00 39.98 4.40
4761 4839 9.685828 ATGTATTTAAACATGTTAAACGTGCTT 57.314 25.926 12.39 0.00 38.65 3.91
4762 4840 8.959058 TGTATTTAAACATGTTAAACGTGCTTG 58.041 29.630 12.39 0.00 38.65 4.01
4763 4841 7.995463 ATTTAAACATGTTAAACGTGCTTGT 57.005 28.000 12.39 0.00 38.65 3.16
4765 4843 8.549777 TTTAAACATGTTAAACGTGCTTGTAG 57.450 30.769 12.39 0.00 38.65 2.74
4766 4844 5.994887 AACATGTTAAACGTGCTTGTAGA 57.005 34.783 9.97 0.00 38.65 2.59
4767 4845 5.994887 ACATGTTAAACGTGCTTGTAGAA 57.005 34.783 0.00 0.00 38.65 2.10
4768 4846 6.366315 ACATGTTAAACGTGCTTGTAGAAA 57.634 33.333 0.00 0.00 38.65 2.52
4769 4847 6.966021 ACATGTTAAACGTGCTTGTAGAAAT 58.034 32.000 0.00 0.00 38.65 2.17
4770 4848 8.090250 ACATGTTAAACGTGCTTGTAGAAATA 57.910 30.769 0.00 0.00 38.65 1.40
4771 4849 8.726988 ACATGTTAAACGTGCTTGTAGAAATAT 58.273 29.630 0.00 0.00 38.65 1.28
4777 4855 8.944212 AAACGTGCTTGTAGAAATATAACAAC 57.056 30.769 0.00 0.00 0.00 3.32
4778 4856 7.661127 ACGTGCTTGTAGAAATATAACAACA 57.339 32.000 0.00 0.00 0.00 3.33
4779 4857 8.090250 ACGTGCTTGTAGAAATATAACAACAA 57.910 30.769 0.00 0.00 0.00 2.83
4780 4858 8.726988 ACGTGCTTGTAGAAATATAACAACAAT 58.273 29.630 0.00 0.00 0.00 2.71
4781 4859 9.554724 CGTGCTTGTAGAAATATAACAACAATT 57.445 29.630 0.00 0.00 0.00 2.32
4798 4876 9.877178 AACAACAATTTTATGTGGACTTAAACA 57.123 25.926 0.00 0.00 32.81 2.83
4799 4877 9.528018 ACAACAATTTTATGTGGACTTAAACAG 57.472 29.630 0.00 0.00 32.81 3.16
4800 4878 9.528018 CAACAATTTTATGTGGACTTAAACAGT 57.472 29.630 0.00 0.00 33.77 3.55
4802 4880 9.744468 ACAATTTTATGTGGACTTAAACAGTTC 57.256 29.630 0.00 0.00 30.93 3.01
4803 4881 9.743057 CAATTTTATGTGGACTTAAACAGTTCA 57.257 29.630 0.00 0.00 38.90 3.18
4805 4883 9.744468 ATTTTATGTGGACTTAAACAGTTCAAC 57.256 29.630 0.00 0.00 43.28 3.18
4806 4884 4.868450 TGTGGACTTAAACAGTTCAACG 57.132 40.909 0.00 0.00 43.28 4.10
4807 4885 4.255301 TGTGGACTTAAACAGTTCAACGT 58.745 39.130 0.00 0.00 43.28 3.99
4808 4886 4.093703 TGTGGACTTAAACAGTTCAACGTG 59.906 41.667 0.00 0.00 43.28 4.49
4809 4887 4.093850 GTGGACTTAAACAGTTCAACGTGT 59.906 41.667 0.00 0.00 43.28 4.49
4810 4888 5.291614 GTGGACTTAAACAGTTCAACGTGTA 59.708 40.000 0.00 0.00 43.28 2.90
4811 4889 6.018507 GTGGACTTAAACAGTTCAACGTGTAT 60.019 38.462 0.00 0.00 43.28 2.29
4812 4890 6.539464 TGGACTTAAACAGTTCAACGTGTATT 59.461 34.615 0.00 0.00 38.17 1.89
4813 4891 7.710044 TGGACTTAAACAGTTCAACGTGTATTA 59.290 33.333 0.00 0.00 38.17 0.98
4814 4892 8.550376 GGACTTAAACAGTTCAACGTGTATTAA 58.450 33.333 0.00 0.00 35.01 1.40
4815 4893 9.919348 GACTTAAACAGTTCAACGTGTATTAAA 57.081 29.630 0.00 0.00 35.01 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.653647 TGGAAATAAAGTATTGCGAGTTTTGT 58.346 30.769 0.00 0.00 0.00 2.83
172 174 2.029623 TCGAGGGCTACCACAAGATAC 58.970 52.381 0.00 0.00 40.13 2.24
188 190 4.123497 TCCCTTGTATTGACACATCGAG 57.877 45.455 0.00 0.00 34.48 4.04
199 201 2.159382 CTGCAACCGTTCCCTTGTATT 58.841 47.619 0.00 0.00 0.00 1.89
203 205 2.919494 GCCTGCAACCGTTCCCTTG 61.919 63.158 0.00 0.00 0.00 3.61
221 223 2.654877 CCAAGCCTTGGCTGCAAG 59.345 61.111 15.52 5.90 45.17 4.01
254 256 2.678336 CCTTTCTTCCTCCCGAATTTCG 59.322 50.000 11.81 11.81 40.07 3.46
306 308 1.610673 GGAGGAGAGACAGGTGGCA 60.611 63.158 0.00 0.00 0.00 4.92
313 315 1.679305 GAGCGTGGGAGGAGAGACA 60.679 63.158 0.00 0.00 0.00 3.41
328 330 0.912006 AAGAGGAAGGGGAGTGGAGC 60.912 60.000 0.00 0.00 0.00 4.70
367 369 2.094442 TGGCGTAGATTGTGTTCGATCA 60.094 45.455 0.00 0.00 37.03 2.92
399 402 1.078759 GAGGTTGTGTGCGAGATCCG 61.079 60.000 0.00 0.00 42.21 4.18
410 413 0.107654 GGATCCCCTTCGAGGTTGTG 60.108 60.000 0.00 0.00 31.93 3.33
411 414 0.252742 AGGATCCCCTTCGAGGTTGT 60.253 55.000 8.55 0.00 40.78 3.32
413 416 2.917804 GAGGATCCCCTTCGAGGTT 58.082 57.895 8.55 0.00 44.53 3.50
459 462 2.524640 TCCACACCGGTGTAGGCA 60.525 61.111 38.32 24.58 42.83 4.75
465 468 4.329545 CCCCACTCCACACCGGTG 62.330 72.222 32.83 32.83 44.85 4.94
471 474 1.048724 GGATCGATCCCCACTCCACA 61.049 60.000 30.80 0.00 41.20 4.17
508 511 0.179100 AGGGTTCGTCATCAGCGATG 60.179 55.000 10.94 10.94 41.00 3.84
513 516 2.893637 CAGGTTAGGGTTCGTCATCAG 58.106 52.381 0.00 0.00 0.00 2.90
516 519 1.276622 AGCAGGTTAGGGTTCGTCAT 58.723 50.000 0.00 0.00 0.00 3.06
776 782 2.538861 CTGCATGCTATGAACTGTCTCG 59.461 50.000 20.33 0.00 0.00 4.04
834 840 8.426489 TCAAAGGAGCAAGTAAAAGAGTAGTTA 58.574 33.333 0.00 0.00 0.00 2.24
863 869 1.843851 TGAACCCAGACTTTCACAGGT 59.156 47.619 0.00 0.00 0.00 4.00
924 930 4.142160 GGAAGATCTTGGGTGCATAAAACC 60.142 45.833 14.00 0.00 36.94 3.27
954 960 6.627087 TGTCCCTCTGTGAGAAATTAAGAT 57.373 37.500 0.00 0.00 0.00 2.40
963 969 1.902508 GATGGTTGTCCCTCTGTGAGA 59.097 52.381 0.00 0.00 0.00 3.27
972 978 0.890683 CCTGCAAAGATGGTTGTCCC 59.109 55.000 0.00 0.00 0.00 4.46
1023 1029 6.473778 CGAGATCTGAAACAATCATAAGACGT 59.526 38.462 0.00 0.00 37.44 4.34
1132 1138 7.897864 TGAAAGTTTGAAACCCAAGAAACTTA 58.102 30.769 4.14 0.00 44.13 2.24
1561 1570 2.353704 CCTTATGTGGACGCTGTTCTGA 60.354 50.000 0.00 0.00 0.00 3.27
1635 1644 2.548480 CCCACGTTTCTCAAACTTCTCC 59.452 50.000 0.00 0.00 39.23 3.71
1683 1692 2.977914 TCAGTAAACATGCTGCCTCTC 58.022 47.619 0.00 0.00 33.09 3.20
1752 1763 8.194769 AGTAGTTAACCACACAAATTCCAAAAG 58.805 33.333 6.94 0.00 0.00 2.27
2389 2400 9.357161 ACCAAACTGTTTAAGTGTATATGGAAA 57.643 29.630 5.31 0.00 39.81 3.13
2435 2446 2.310052 AGAAACTGAAATGGGAGAGGGG 59.690 50.000 0.00 0.00 0.00 4.79
2447 2458 8.562892 CAGAATTAGAAAGCTTGAGAAACTGAA 58.437 33.333 0.00 0.00 0.00 3.02
2599 2610 0.307146 GAAGCGAGCTCATCAATGGC 59.693 55.000 15.40 6.97 0.00 4.40
2613 2624 4.158384 GTTTGTCACCATAACATGAAGCG 58.842 43.478 0.00 0.00 0.00 4.68
2652 2663 2.180276 ACTAGTCTGTCCACCCATGAC 58.820 52.381 0.00 0.00 0.00 3.06
2774 2785 8.425577 TTTTTGTTGAAGTTTGAGTTGTTCAA 57.574 26.923 0.00 0.00 43.92 2.69
2778 2789 7.173047 AGCAATTTTTGTTGAAGTTTGAGTTGT 59.827 29.630 0.00 0.00 0.00 3.32
2833 2844 7.962441 AGCACATAAAAACTGGGTAAAAAGAT 58.038 30.769 0.00 0.00 0.00 2.40
2834 2845 7.068839 TGAGCACATAAAAACTGGGTAAAAAGA 59.931 33.333 0.00 0.00 0.00 2.52
2850 2861 7.692460 ACAAGAATTCTGATTGAGCACATAA 57.308 32.000 9.17 0.00 0.00 1.90
2952 2963 8.679100 TGTGCGCAAAGTAATATAAAAACCTAT 58.321 29.630 14.00 0.00 0.00 2.57
3146 3161 4.273480 CAGAATATGCAGTAAAGGGGTTCG 59.727 45.833 0.00 0.00 0.00 3.95
3150 3165 6.601613 TGTTTACAGAATATGCAGTAAAGGGG 59.398 38.462 10.81 0.00 37.18 4.79
3160 3175 9.869844 GTAGTCATTGATGTTTACAGAATATGC 57.130 33.333 0.00 0.00 0.00 3.14
3165 3180 9.725019 ATCAAGTAGTCATTGATGTTTACAGAA 57.275 29.630 0.62 0.00 43.87 3.02
3199 3214 9.806203 TTTTGCAATGGACTTTGAATATATGAG 57.194 29.630 0.00 0.00 0.00 2.90
3205 3220 6.454795 GTCCTTTTGCAATGGACTTTGAATA 58.545 36.000 29.59 6.19 46.63 1.75
3217 3232 1.068434 CACGGGTTGTCCTTTTGCAAT 59.932 47.619 0.00 0.00 0.00 3.56
3241 3256 3.127548 AGTGCTCAACAATAAATGCCTCG 59.872 43.478 0.00 0.00 0.00 4.63
3250 3267 9.967346 GATATAACTACTGAGTGCTCAACAATA 57.033 33.333 0.00 0.00 39.39 1.90
3251 3268 7.928706 GGATATAACTACTGAGTGCTCAACAAT 59.071 37.037 0.00 0.00 39.39 2.71
3284 3301 4.615588 TTGATTTTCAACATCCCCAACC 57.384 40.909 0.00 0.00 30.26 3.77
3440 3469 5.485353 TGCCCTCCATTATAGGTAGAATCAG 59.515 44.000 0.00 0.00 31.70 2.90
3576 3607 7.542025 GTTAAACATTCAGCTGAGGATGATTT 58.458 34.615 27.45 23.25 37.72 2.17
3601 3632 0.858961 GAAAACAGCATAGCAGCGCG 60.859 55.000 0.00 0.00 40.15 6.86
3606 3637 1.541147 GCACCTGAAAACAGCATAGCA 59.459 47.619 0.00 0.00 0.00 3.49
3615 3646 1.008538 CCACGCAGCACCTGAAAAC 60.009 57.895 0.00 0.00 32.44 2.43
3678 3709 1.199624 GTTTTGGCTCAACACAAGCG 58.800 50.000 0.00 0.00 40.77 4.68
3679 3710 1.136891 AGGTTTTGGCTCAACACAAGC 59.863 47.619 6.56 0.00 39.09 4.01
3839 3884 4.664150 AGCTATCCAGTCTAGAGTTTGC 57.336 45.455 0.00 0.00 0.00 3.68
3860 3905 3.501548 GAAAATGCGCCGGCGGTA 61.502 61.111 45.81 28.13 44.10 4.02
3878 3937 8.333908 CACGATTTCTTATTTGATCCTCAAGAG 58.666 37.037 0.00 0.00 37.70 2.85
3918 3977 9.696917 ACATTATGAACAAGTGAAAGAAATTCC 57.303 29.630 0.00 0.00 37.22 3.01
3969 4028 2.690497 AGACGTCATCCAGTCCAGTATG 59.310 50.000 19.50 0.00 38.08 2.39
3986 4047 0.449388 GGCAAAGGCATCAAGAGACG 59.551 55.000 0.00 0.00 43.71 4.18
4014 4085 5.006455 TCTCATGACAGTAACGACGAGATAC 59.994 44.000 0.00 2.03 0.00 2.24
4015 4086 5.114081 TCTCATGACAGTAACGACGAGATA 58.886 41.667 0.00 0.00 0.00 1.98
4016 4087 3.939592 TCTCATGACAGTAACGACGAGAT 59.060 43.478 0.00 0.00 0.00 2.75
4017 4088 3.332034 TCTCATGACAGTAACGACGAGA 58.668 45.455 0.00 0.00 0.00 4.04
4018 4089 3.486043 CCTCTCATGACAGTAACGACGAG 60.486 52.174 0.00 0.00 0.00 4.18
4019 4090 2.418976 CCTCTCATGACAGTAACGACGA 59.581 50.000 0.00 0.00 0.00 4.20
4020 4091 2.786854 CCTCTCATGACAGTAACGACG 58.213 52.381 0.00 0.00 0.00 5.12
4021 4092 2.164624 AGCCTCTCATGACAGTAACGAC 59.835 50.000 0.00 0.00 0.00 4.34
4022 4093 2.447443 AGCCTCTCATGACAGTAACGA 58.553 47.619 0.00 0.00 0.00 3.85
4023 4094 2.949451 AGCCTCTCATGACAGTAACG 57.051 50.000 0.00 0.00 0.00 3.18
4024 4095 5.725362 AGTTTAGCCTCTCATGACAGTAAC 58.275 41.667 0.00 0.00 0.00 2.50
4025 4096 7.476540 TTAGTTTAGCCTCTCATGACAGTAA 57.523 36.000 0.00 0.00 0.00 2.24
4026 4097 7.178628 ACTTTAGTTTAGCCTCTCATGACAGTA 59.821 37.037 0.00 0.00 0.00 2.74
4057 4133 0.694444 ACTGGACTGGGACTGGTGTT 60.694 55.000 0.00 0.00 0.00 3.32
4060 4136 3.708236 ATATACTGGACTGGGACTGGT 57.292 47.619 0.00 0.00 0.00 4.00
4072 4148 8.176365 GCACATCGAACTACTAGTATATACTGG 58.824 40.741 23.09 22.07 40.22 4.00
4073 4149 8.937884 AGCACATCGAACTACTAGTATATACTG 58.062 37.037 23.09 15.47 37.10 2.74
4077 4153 9.504708 AAGTAGCACATCGAACTACTAGTATAT 57.495 33.333 16.36 0.00 44.43 0.86
4078 4154 8.771766 CAAGTAGCACATCGAACTACTAGTATA 58.228 37.037 16.36 0.00 44.43 1.47
4079 4155 7.282675 ACAAGTAGCACATCGAACTACTAGTAT 59.717 37.037 16.36 0.00 44.43 2.12
4080 4156 6.596888 ACAAGTAGCACATCGAACTACTAGTA 59.403 38.462 16.36 1.89 44.43 1.82
4081 4157 5.415077 ACAAGTAGCACATCGAACTACTAGT 59.585 40.000 16.36 0.00 44.43 2.57
4082 4158 5.881447 ACAAGTAGCACATCGAACTACTAG 58.119 41.667 16.36 0.00 44.43 2.57
4085 4161 5.840940 AAACAAGTAGCACATCGAACTAC 57.159 39.130 9.15 9.15 37.20 2.73
4107 4184 5.935945 TCTGGGAGAACAAACACTGAATAA 58.064 37.500 0.00 0.00 0.00 1.40
4108 4185 5.560722 TCTGGGAGAACAAACACTGAATA 57.439 39.130 0.00 0.00 0.00 1.75
4109 4186 4.437682 TCTGGGAGAACAAACACTGAAT 57.562 40.909 0.00 0.00 0.00 2.57
4111 4188 3.743521 CATCTGGGAGAACAAACACTGA 58.256 45.455 0.00 0.00 0.00 3.41
4112 4189 2.227388 GCATCTGGGAGAACAAACACTG 59.773 50.000 0.00 0.00 0.00 3.66
4113 4190 2.158623 TGCATCTGGGAGAACAAACACT 60.159 45.455 0.00 0.00 0.00 3.55
4114 4191 2.229792 TGCATCTGGGAGAACAAACAC 58.770 47.619 0.00 0.00 0.00 3.32
4116 4193 3.507233 TGAATGCATCTGGGAGAACAAAC 59.493 43.478 0.00 0.00 0.00 2.93
4117 4194 3.765381 TGAATGCATCTGGGAGAACAAA 58.235 40.909 0.00 0.00 0.00 2.83
4118 4195 3.438216 TGAATGCATCTGGGAGAACAA 57.562 42.857 0.00 0.00 0.00 2.83
4125 4203 6.164417 TGGATAAAAATGAATGCATCTGGG 57.836 37.500 0.00 0.00 32.35 4.45
4127 4205 9.542462 AGAAATGGATAAAAATGAATGCATCTG 57.458 29.630 0.00 0.00 33.60 2.90
4132 4210 6.476380 TCGCAGAAATGGATAAAAATGAATGC 59.524 34.615 0.00 0.00 0.00 3.56
4168 4246 0.753262 CCTCTTGTACCCTCCATCGG 59.247 60.000 0.00 0.00 0.00 4.18
4169 4247 0.753262 CCCTCTTGTACCCTCCATCG 59.247 60.000 0.00 0.00 0.00 3.84
4170 4248 0.470341 GCCCTCTTGTACCCTCCATC 59.530 60.000 0.00 0.00 0.00 3.51
4171 4249 0.988678 GGCCCTCTTGTACCCTCCAT 60.989 60.000 0.00 0.00 0.00 3.41
4172 4250 1.615424 GGCCCTCTTGTACCCTCCA 60.615 63.158 0.00 0.00 0.00 3.86
4173 4251 1.307084 AGGCCCTCTTGTACCCTCC 60.307 63.158 0.00 0.00 0.00 4.30
4174 4252 1.627297 CCAGGCCCTCTTGTACCCTC 61.627 65.000 0.00 0.00 0.00 4.30
4175 4253 1.616628 CCAGGCCCTCTTGTACCCT 60.617 63.158 0.00 0.00 0.00 4.34
4176 4254 1.911702 GACCAGGCCCTCTTGTACCC 61.912 65.000 0.00 0.00 0.00 3.69
4177 4255 1.602771 GACCAGGCCCTCTTGTACC 59.397 63.158 0.00 0.00 0.00 3.34
4178 4256 1.218316 CGACCAGGCCCTCTTGTAC 59.782 63.158 0.00 0.00 0.00 2.90
4179 4257 0.325296 ATCGACCAGGCCCTCTTGTA 60.325 55.000 0.00 0.00 0.00 2.41
4180 4258 1.613630 ATCGACCAGGCCCTCTTGT 60.614 57.895 0.00 0.00 0.00 3.16
4181 4259 1.153289 CATCGACCAGGCCCTCTTG 60.153 63.158 0.00 0.00 0.00 3.02
4182 4260 1.613630 ACATCGACCAGGCCCTCTT 60.614 57.895 0.00 0.00 0.00 2.85
4183 4261 2.039624 ACATCGACCAGGCCCTCT 59.960 61.111 0.00 0.00 0.00 3.69
4184 4262 2.501610 GACATCGACCAGGCCCTC 59.498 66.667 0.00 0.00 0.00 4.30
4185 4263 3.083997 GGACATCGACCAGGCCCT 61.084 66.667 0.00 0.00 0.00 5.19
4186 4264 1.407656 TATGGACATCGACCAGGCCC 61.408 60.000 0.00 0.00 40.89 5.80
4187 4265 0.468226 TTATGGACATCGACCAGGCC 59.532 55.000 0.00 0.00 40.89 5.19
4188 4266 2.213499 CTTTATGGACATCGACCAGGC 58.787 52.381 0.00 0.00 40.89 4.85
4189 4267 2.170607 ACCTTTATGGACATCGACCAGG 59.829 50.000 0.00 0.00 40.89 4.45
4190 4268 3.458189 GACCTTTATGGACATCGACCAG 58.542 50.000 0.00 0.00 40.89 4.00
4191 4269 2.169769 GGACCTTTATGGACATCGACCA 59.830 50.000 0.00 0.00 41.83 4.02
4192 4270 2.434702 AGGACCTTTATGGACATCGACC 59.565 50.000 0.00 0.00 39.71 4.79
4193 4271 3.132289 TGAGGACCTTTATGGACATCGAC 59.868 47.826 0.00 0.00 42.48 4.20
4194 4272 3.371034 TGAGGACCTTTATGGACATCGA 58.629 45.455 0.00 0.00 42.48 3.59
4195 4273 3.819564 TGAGGACCTTTATGGACATCG 57.180 47.619 0.00 0.00 42.48 3.84
4196 4274 5.501156 AGTTTGAGGACCTTTATGGACATC 58.499 41.667 0.00 0.00 40.61 3.06
4197 4275 5.520748 AGTTTGAGGACCTTTATGGACAT 57.479 39.130 0.00 0.00 39.71 3.06
4198 4276 4.993705 AGTTTGAGGACCTTTATGGACA 57.006 40.909 0.00 0.00 39.71 4.02
4199 4277 6.708285 TCTAAGTTTGAGGACCTTTATGGAC 58.292 40.000 0.00 0.00 39.71 4.02
4200 4278 6.945636 TCTAAGTTTGAGGACCTTTATGGA 57.054 37.500 0.00 0.00 39.71 3.41
4201 4279 7.665974 AGTTTCTAAGTTTGAGGACCTTTATGG 59.334 37.037 0.00 0.00 42.93 2.74
4202 4280 8.507249 CAGTTTCTAAGTTTGAGGACCTTTATG 58.493 37.037 0.00 0.00 0.00 1.90
4203 4281 8.218488 ACAGTTTCTAAGTTTGAGGACCTTTAT 58.782 33.333 0.00 0.00 0.00 1.40
4204 4282 7.571025 ACAGTTTCTAAGTTTGAGGACCTTTA 58.429 34.615 0.00 0.00 0.00 1.85
4205 4283 6.424032 ACAGTTTCTAAGTTTGAGGACCTTT 58.576 36.000 0.00 0.00 0.00 3.11
4206 4284 6.002653 ACAGTTTCTAAGTTTGAGGACCTT 57.997 37.500 0.00 0.00 0.00 3.50
4207 4285 5.632034 ACAGTTTCTAAGTTTGAGGACCT 57.368 39.130 0.00 0.00 0.00 3.85
4208 4286 6.317893 TGAAACAGTTTCTAAGTTTGAGGACC 59.682 38.462 23.57 0.00 40.32 4.46
4209 4287 7.316544 TGAAACAGTTTCTAAGTTTGAGGAC 57.683 36.000 23.57 0.00 40.32 3.85
4210 4288 7.931578 TTGAAACAGTTTCTAAGTTTGAGGA 57.068 32.000 23.57 0.00 40.32 3.71
4211 4289 9.665264 GTATTGAAACAGTTTCTAAGTTTGAGG 57.335 33.333 23.57 0.00 40.32 3.86
4217 4295 9.574516 AGGATTGTATTGAAACAGTTTCTAAGT 57.425 29.630 23.57 11.28 40.32 2.24
4218 4296 9.831737 CAGGATTGTATTGAAACAGTTTCTAAG 57.168 33.333 23.57 2.41 40.32 2.18
4219 4297 8.792633 CCAGGATTGTATTGAAACAGTTTCTAA 58.207 33.333 23.57 16.75 40.32 2.10
4220 4298 8.160765 TCCAGGATTGTATTGAAACAGTTTCTA 58.839 33.333 23.57 17.92 40.32 2.10
4221 4299 7.004086 TCCAGGATTGTATTGAAACAGTTTCT 58.996 34.615 23.57 9.73 40.32 2.52
4222 4300 7.214467 TCCAGGATTGTATTGAAACAGTTTC 57.786 36.000 17.85 17.85 40.08 2.78
4223 4301 7.287696 AGTTCCAGGATTGTATTGAAACAGTTT 59.712 33.333 0.00 0.00 0.00 2.66
4224 4302 6.777580 AGTTCCAGGATTGTATTGAAACAGTT 59.222 34.615 0.00 0.00 0.00 3.16
4225 4303 6.306987 AGTTCCAGGATTGTATTGAAACAGT 58.693 36.000 0.00 0.00 0.00 3.55
4226 4304 6.824305 AGTTCCAGGATTGTATTGAAACAG 57.176 37.500 0.00 0.00 0.00 3.16
4227 4305 6.516527 GCAAGTTCCAGGATTGTATTGAAACA 60.517 38.462 4.94 0.00 0.00 2.83
4228 4306 5.863935 GCAAGTTCCAGGATTGTATTGAAAC 59.136 40.000 4.94 0.00 0.00 2.78
4229 4307 5.047377 GGCAAGTTCCAGGATTGTATTGAAA 60.047 40.000 4.94 0.00 0.00 2.69
4230 4308 4.462483 GGCAAGTTCCAGGATTGTATTGAA 59.538 41.667 4.94 0.00 0.00 2.69
4231 4309 4.016444 GGCAAGTTCCAGGATTGTATTGA 58.984 43.478 4.94 0.00 0.00 2.57
4232 4310 4.019174 AGGCAAGTTCCAGGATTGTATTG 58.981 43.478 4.94 1.34 0.00 1.90
4233 4311 4.322057 AGGCAAGTTCCAGGATTGTATT 57.678 40.909 4.94 0.00 0.00 1.89
4234 4312 4.322057 AAGGCAAGTTCCAGGATTGTAT 57.678 40.909 4.94 0.00 0.00 2.29
4235 4313 3.806949 AAGGCAAGTTCCAGGATTGTA 57.193 42.857 4.94 0.00 0.00 2.41
4236 4314 2.683211 AAGGCAAGTTCCAGGATTGT 57.317 45.000 4.94 0.00 0.00 2.71
4237 4315 5.220854 CGTATTAAGGCAAGTTCCAGGATTG 60.221 44.000 0.00 0.00 0.00 2.67
4238 4316 4.881850 CGTATTAAGGCAAGTTCCAGGATT 59.118 41.667 0.00 0.00 0.00 3.01
4239 4317 4.163458 TCGTATTAAGGCAAGTTCCAGGAT 59.837 41.667 0.00 0.00 0.00 3.24
4240 4318 3.516300 TCGTATTAAGGCAAGTTCCAGGA 59.484 43.478 0.00 0.00 0.00 3.86
4241 4319 3.869065 TCGTATTAAGGCAAGTTCCAGG 58.131 45.455 0.00 0.00 0.00 4.45
4242 4320 4.511826 GGATCGTATTAAGGCAAGTTCCAG 59.488 45.833 0.00 0.00 0.00 3.86
4243 4321 4.163458 AGGATCGTATTAAGGCAAGTTCCA 59.837 41.667 0.00 0.00 0.00 3.53
4244 4322 4.704965 AGGATCGTATTAAGGCAAGTTCC 58.295 43.478 0.00 0.00 0.00 3.62
4245 4323 5.815740 TCAAGGATCGTATTAAGGCAAGTTC 59.184 40.000 0.00 0.00 0.00 3.01
4246 4324 5.741011 TCAAGGATCGTATTAAGGCAAGTT 58.259 37.500 0.00 0.00 0.00 2.66
4247 4325 5.353394 TCAAGGATCGTATTAAGGCAAGT 57.647 39.130 0.00 0.00 0.00 3.16
4248 4326 5.817816 AGTTCAAGGATCGTATTAAGGCAAG 59.182 40.000 0.00 0.00 0.00 4.01
4249 4327 5.741011 AGTTCAAGGATCGTATTAAGGCAA 58.259 37.500 0.00 0.00 0.00 4.52
4250 4328 5.353394 AGTTCAAGGATCGTATTAAGGCA 57.647 39.130 0.00 0.00 0.00 4.75
4251 4329 5.007724 CCAAGTTCAAGGATCGTATTAAGGC 59.992 44.000 0.00 0.00 0.00 4.35
4252 4330 6.037172 CACCAAGTTCAAGGATCGTATTAAGG 59.963 42.308 0.00 0.00 0.00 2.69
4253 4331 6.816640 TCACCAAGTTCAAGGATCGTATTAAG 59.183 38.462 0.00 0.00 0.00 1.85
4254 4332 6.703319 TCACCAAGTTCAAGGATCGTATTAA 58.297 36.000 0.00 0.00 0.00 1.40
4255 4333 6.288941 TCACCAAGTTCAAGGATCGTATTA 57.711 37.500 0.00 0.00 0.00 0.98
4256 4334 5.160607 TCACCAAGTTCAAGGATCGTATT 57.839 39.130 0.00 0.00 0.00 1.89
4257 4335 4.819105 TCACCAAGTTCAAGGATCGTAT 57.181 40.909 0.00 0.00 0.00 3.06
4258 4336 4.312443 GTTCACCAAGTTCAAGGATCGTA 58.688 43.478 0.00 0.00 0.00 3.43
4259 4337 3.139077 GTTCACCAAGTTCAAGGATCGT 58.861 45.455 0.00 0.00 0.00 3.73
4260 4338 2.484264 GGTTCACCAAGTTCAAGGATCG 59.516 50.000 0.00 0.00 35.64 3.69
4261 4339 2.484264 CGGTTCACCAAGTTCAAGGATC 59.516 50.000 0.00 0.00 35.14 3.36
4262 4340 2.504367 CGGTTCACCAAGTTCAAGGAT 58.496 47.619 0.00 0.00 35.14 3.24
4263 4341 1.476110 CCGGTTCACCAAGTTCAAGGA 60.476 52.381 0.00 0.00 35.14 3.36
4264 4342 0.951558 CCGGTTCACCAAGTTCAAGG 59.048 55.000 0.00 0.00 35.14 3.61
4265 4343 1.602377 GACCGGTTCACCAAGTTCAAG 59.398 52.381 9.42 0.00 35.14 3.02
4266 4344 1.670791 GACCGGTTCACCAAGTTCAA 58.329 50.000 9.42 0.00 35.14 2.69
4267 4345 0.179040 GGACCGGTTCACCAAGTTCA 60.179 55.000 9.42 0.00 35.14 3.18
4268 4346 0.108019 AGGACCGGTTCACCAAGTTC 59.892 55.000 17.22 0.00 35.14 3.01
4269 4347 0.108019 GAGGACCGGTTCACCAAGTT 59.892 55.000 17.22 0.00 35.14 2.66
4270 4348 0.763223 AGAGGACCGGTTCACCAAGT 60.763 55.000 17.22 0.00 35.14 3.16
4271 4349 0.320771 CAGAGGACCGGTTCACCAAG 60.321 60.000 17.22 0.00 35.14 3.61
4272 4350 0.761323 TCAGAGGACCGGTTCACCAA 60.761 55.000 17.22 0.00 35.14 3.67
4273 4351 0.544357 ATCAGAGGACCGGTTCACCA 60.544 55.000 17.22 0.00 35.14 4.17
4274 4352 0.108138 CATCAGAGGACCGGTTCACC 60.108 60.000 17.22 9.45 0.00 4.02
4275 4353 0.608640 ACATCAGAGGACCGGTTCAC 59.391 55.000 17.22 9.36 0.00 3.18
4276 4354 2.225382 TACATCAGAGGACCGGTTCA 57.775 50.000 17.22 0.00 0.00 3.18
4277 4355 3.635373 TGTATACATCAGAGGACCGGTTC 59.365 47.826 9.42 6.68 0.00 3.62
4278 4356 3.638860 TGTATACATCAGAGGACCGGTT 58.361 45.455 9.42 0.00 0.00 4.44
4279 4357 3.308035 TGTATACATCAGAGGACCGGT 57.692 47.619 6.92 6.92 0.00 5.28
4280 4358 3.056536 CCATGTATACATCAGAGGACCGG 60.057 52.174 15.60 0.00 33.61 5.28
4281 4359 3.056536 CCCATGTATACATCAGAGGACCG 60.057 52.174 15.60 1.64 33.61 4.79
4282 4360 3.261897 CCCCATGTATACATCAGAGGACC 59.738 52.174 15.60 0.00 33.61 4.46
4283 4361 3.904339 ACCCCATGTATACATCAGAGGAC 59.096 47.826 15.60 0.00 33.61 3.85
4284 4362 4.213531 ACCCCATGTATACATCAGAGGA 57.786 45.455 15.60 0.00 33.61 3.71
4285 4363 4.263068 GGAACCCCATGTATACATCAGAGG 60.263 50.000 15.60 13.14 33.61 3.69
4286 4364 4.594920 AGGAACCCCATGTATACATCAGAG 59.405 45.833 15.60 4.79 33.61 3.35
4287 4365 4.566837 AGGAACCCCATGTATACATCAGA 58.433 43.478 15.60 0.00 33.61 3.27
4288 4366 4.982241 AGGAACCCCATGTATACATCAG 57.018 45.455 15.60 9.96 33.61 2.90
4289 4367 5.849475 ACATAGGAACCCCATGTATACATCA 59.151 40.000 15.60 0.00 34.60 3.07
4290 4368 6.374417 ACATAGGAACCCCATGTATACATC 57.626 41.667 15.60 4.47 34.60 3.06
4291 4369 6.214819 GGTACATAGGAACCCCATGTATACAT 59.785 42.308 12.75 12.75 38.01 2.29
4292 4370 5.544948 GGTACATAGGAACCCCATGTATACA 59.455 44.000 8.27 8.27 38.01 2.29
4293 4371 6.046290 GGTACATAGGAACCCCATGTATAC 57.954 45.833 14.58 0.00 38.01 1.47
4303 4381 3.945921 GCTTGAAAGGGTACATAGGAACC 59.054 47.826 0.00 0.00 34.85 3.62
4304 4382 3.621715 CGCTTGAAAGGGTACATAGGAAC 59.378 47.826 0.00 0.00 34.59 3.62
4305 4383 3.516300 TCGCTTGAAAGGGTACATAGGAA 59.484 43.478 6.96 0.00 39.69 3.36
4306 4384 3.101437 TCGCTTGAAAGGGTACATAGGA 58.899 45.455 6.96 0.00 39.69 2.94
4307 4385 3.536956 TCGCTTGAAAGGGTACATAGG 57.463 47.619 6.96 0.00 39.69 2.57
4308 4386 6.436843 AAAATCGCTTGAAAGGGTACATAG 57.563 37.500 6.96 0.00 39.69 2.23
4309 4387 6.827586 AAAAATCGCTTGAAAGGGTACATA 57.172 33.333 6.96 0.00 39.69 2.29
4310 4388 5.722021 AAAAATCGCTTGAAAGGGTACAT 57.278 34.783 6.96 0.00 39.69 2.29
4311 4389 6.402766 CGATAAAAATCGCTTGAAAGGGTACA 60.403 38.462 6.96 0.00 39.69 2.90
4312 4390 5.963586 CGATAAAAATCGCTTGAAAGGGTAC 59.036 40.000 6.96 0.00 39.69 3.34
4313 4391 6.114221 CGATAAAAATCGCTTGAAAGGGTA 57.886 37.500 6.96 0.00 39.69 3.69
4314 4392 4.981794 CGATAAAAATCGCTTGAAAGGGT 58.018 39.130 6.96 0.00 39.69 4.34
4326 4404 9.422196 GCATGTGTAGAACTAACGATAAAAATC 57.578 33.333 0.00 0.00 0.00 2.17
4327 4405 9.162764 AGCATGTGTAGAACTAACGATAAAAAT 57.837 29.630 0.00 0.00 0.00 1.82
4328 4406 8.440059 CAGCATGTGTAGAACTAACGATAAAAA 58.560 33.333 0.00 0.00 0.00 1.94
4329 4407 7.412563 GCAGCATGTGTAGAACTAACGATAAAA 60.413 37.037 0.00 0.00 39.31 1.52
4330 4408 6.035650 GCAGCATGTGTAGAACTAACGATAAA 59.964 38.462 0.00 0.00 39.31 1.40
4331 4409 5.518847 GCAGCATGTGTAGAACTAACGATAA 59.481 40.000 0.00 0.00 39.31 1.75
4332 4410 5.041287 GCAGCATGTGTAGAACTAACGATA 58.959 41.667 0.00 0.00 39.31 2.92
4333 4411 3.865745 GCAGCATGTGTAGAACTAACGAT 59.134 43.478 0.00 0.00 39.31 3.73
4334 4412 3.056821 AGCAGCATGTGTAGAACTAACGA 60.057 43.478 0.00 0.00 39.31 3.85
4335 4413 3.254060 AGCAGCATGTGTAGAACTAACG 58.746 45.455 0.00 0.00 39.31 3.18
4336 4414 3.619038 GGAGCAGCATGTGTAGAACTAAC 59.381 47.826 0.00 0.00 39.31 2.34
4337 4415 3.515502 AGGAGCAGCATGTGTAGAACTAA 59.484 43.478 0.00 0.00 39.31 2.24
4338 4416 3.099905 AGGAGCAGCATGTGTAGAACTA 58.900 45.455 0.00 0.00 39.31 2.24
4339 4417 1.905215 AGGAGCAGCATGTGTAGAACT 59.095 47.619 0.00 0.00 39.31 3.01
4340 4418 2.393271 AGGAGCAGCATGTGTAGAAC 57.607 50.000 0.00 0.00 39.31 3.01
4341 4419 4.281941 CCTATAGGAGCAGCATGTGTAGAA 59.718 45.833 14.11 0.00 36.12 2.10
4342 4420 3.829026 CCTATAGGAGCAGCATGTGTAGA 59.171 47.826 14.11 0.00 36.12 2.59
4343 4421 3.616076 GCCTATAGGAGCAGCATGTGTAG 60.616 52.174 23.61 0.00 36.12 2.74
4344 4422 2.300152 GCCTATAGGAGCAGCATGTGTA 59.700 50.000 23.61 0.00 36.12 2.90
4345 4423 1.071385 GCCTATAGGAGCAGCATGTGT 59.929 52.381 23.61 0.00 36.12 3.72
4346 4424 1.071228 TGCCTATAGGAGCAGCATGTG 59.929 52.381 23.61 0.00 36.12 3.21
4347 4425 1.071385 GTGCCTATAGGAGCAGCATGT 59.929 52.381 23.61 0.00 40.28 3.21
4348 4426 1.805869 GTGCCTATAGGAGCAGCATG 58.194 55.000 23.61 0.00 40.28 4.06
4349 4427 0.319728 CGTGCCTATAGGAGCAGCAT 59.680 55.000 23.61 0.00 40.28 3.79
4350 4428 1.742146 CGTGCCTATAGGAGCAGCA 59.258 57.895 23.61 9.67 40.28 4.41
4351 4429 1.666234 GCGTGCCTATAGGAGCAGC 60.666 63.158 23.61 16.38 40.28 5.25
4352 4430 0.598680 GTGCGTGCCTATAGGAGCAG 60.599 60.000 26.70 15.00 40.28 4.24
4353 4431 1.326951 TGTGCGTGCCTATAGGAGCA 61.327 55.000 23.61 23.88 38.55 4.26
4354 4432 0.034059 ATGTGCGTGCCTATAGGAGC 59.966 55.000 23.61 21.77 37.39 4.70
4355 4433 1.069204 ACATGTGCGTGCCTATAGGAG 59.931 52.381 23.61 13.19 37.39 3.69
4356 4434 1.119684 ACATGTGCGTGCCTATAGGA 58.880 50.000 23.61 4.91 37.39 2.94
4357 4435 1.953559 AACATGTGCGTGCCTATAGG 58.046 50.000 15.01 15.01 38.53 2.57
4358 4436 3.198068 AGAAACATGTGCGTGCCTATAG 58.802 45.455 0.00 0.00 0.00 1.31
4359 4437 3.260475 AGAAACATGTGCGTGCCTATA 57.740 42.857 0.00 0.00 0.00 1.31
4360 4438 2.113860 AGAAACATGTGCGTGCCTAT 57.886 45.000 0.00 0.00 0.00 2.57
4361 4439 1.804151 GAAGAAACATGTGCGTGCCTA 59.196 47.619 0.00 0.00 0.00 3.93
4362 4440 0.593128 GAAGAAACATGTGCGTGCCT 59.407 50.000 0.00 0.00 0.00 4.75
4363 4441 0.593128 AGAAGAAACATGTGCGTGCC 59.407 50.000 0.00 0.00 0.00 5.01
4364 4442 2.405892 AAGAAGAAACATGTGCGTGC 57.594 45.000 0.00 0.00 0.00 5.34
4454 4532 9.877178 TTTCTTCAAGTTTTATGGCAACTTTAA 57.123 25.926 0.00 0.00 41.58 1.52
4455 4533 9.528018 CTTTCTTCAAGTTTTATGGCAACTTTA 57.472 29.630 0.00 0.00 41.58 1.85
4456 4534 8.040727 ACTTTCTTCAAGTTTTATGGCAACTTT 58.959 29.630 0.00 0.00 43.89 2.66
4457 4535 7.492344 CACTTTCTTCAAGTTTTATGGCAACTT 59.508 33.333 0.00 0.00 43.89 2.66
4458 4536 6.980397 CACTTTCTTCAAGTTTTATGGCAACT 59.020 34.615 0.00 0.00 43.89 3.16
4459 4537 6.756542 ACACTTTCTTCAAGTTTTATGGCAAC 59.243 34.615 0.00 0.00 43.89 4.17
4460 4538 6.872920 ACACTTTCTTCAAGTTTTATGGCAA 58.127 32.000 0.00 0.00 43.89 4.52
4461 4539 6.463995 ACACTTTCTTCAAGTTTTATGGCA 57.536 33.333 0.00 0.00 43.89 4.92
4462 4540 7.277760 ACAAACACTTTCTTCAAGTTTTATGGC 59.722 33.333 0.00 0.00 43.89 4.40
4463 4541 8.594687 CACAAACACTTTCTTCAAGTTTTATGG 58.405 33.333 0.00 0.00 43.89 2.74
4464 4542 8.110002 GCACAAACACTTTCTTCAAGTTTTATG 58.890 33.333 0.00 0.00 43.89 1.90
4465 4543 7.816995 TGCACAAACACTTTCTTCAAGTTTTAT 59.183 29.630 0.00 0.00 43.89 1.40
4466 4544 7.148641 TGCACAAACACTTTCTTCAAGTTTTA 58.851 30.769 0.00 0.00 43.89 1.52
4467 4545 5.988561 TGCACAAACACTTTCTTCAAGTTTT 59.011 32.000 0.00 0.00 43.89 2.43
4468 4546 5.537188 TGCACAAACACTTTCTTCAAGTTT 58.463 33.333 0.00 0.00 43.89 2.66
4469 4547 5.132897 TGCACAAACACTTTCTTCAAGTT 57.867 34.783 0.00 0.00 43.89 2.66
4471 4549 6.310956 TCAAATGCACAAACACTTTCTTCAAG 59.689 34.615 0.00 0.00 38.64 3.02
4472 4550 6.162079 TCAAATGCACAAACACTTTCTTCAA 58.838 32.000 0.00 0.00 0.00 2.69
4473 4551 5.718146 TCAAATGCACAAACACTTTCTTCA 58.282 33.333 0.00 0.00 0.00 3.02
4474 4552 6.645700 TTCAAATGCACAAACACTTTCTTC 57.354 33.333 0.00 0.00 0.00 2.87
4475 4553 7.432350 TTTTCAAATGCACAAACACTTTCTT 57.568 28.000 0.00 0.00 0.00 2.52
4476 4554 7.432350 TTTTTCAAATGCACAAACACTTTCT 57.568 28.000 0.00 0.00 0.00 2.52
4501 4579 9.737844 ACATTTTCCAAAAATATGCTAACCATT 57.262 25.926 0.00 0.00 35.34 3.16
4502 4580 9.737844 AACATTTTCCAAAAATATGCTAACCAT 57.262 25.926 0.00 0.00 37.97 3.55
4503 4581 9.566432 AAACATTTTCCAAAAATATGCTAACCA 57.434 25.926 0.00 0.00 0.00 3.67
4507 4585 8.920665 CGTGAAACATTTTCCAAAAATATGCTA 58.079 29.630 0.00 0.00 35.74 3.49
4508 4586 7.440856 ACGTGAAACATTTTCCAAAAATATGCT 59.559 29.630 0.00 0.00 35.74 3.79
4509 4587 7.530190 CACGTGAAACATTTTCCAAAAATATGC 59.470 33.333 10.90 0.00 35.74 3.14
4510 4588 8.547069 ACACGTGAAACATTTTCCAAAAATATG 58.453 29.630 25.01 0.00 35.74 1.78
4511 4589 8.655651 ACACGTGAAACATTTTCCAAAAATAT 57.344 26.923 25.01 0.00 35.74 1.28
4512 4590 9.751542 ATACACGTGAAACATTTTCCAAAAATA 57.248 25.926 25.01 0.00 35.74 1.40
4513 4591 6.976636 ACACGTGAAACATTTTCCAAAAAT 57.023 29.167 25.01 0.00 35.74 1.82
4514 4592 8.480643 AATACACGTGAAACATTTTCCAAAAA 57.519 26.923 25.01 0.00 35.74 1.94
4515 4593 9.582431 TTAATACACGTGAAACATTTTCCAAAA 57.418 25.926 25.01 3.65 35.74 2.44
4516 4594 9.021863 GTTAATACACGTGAAACATTTTCCAAA 57.978 29.630 25.01 4.27 35.74 3.28
4517 4595 8.188799 TGTTAATACACGTGAAACATTTTCCAA 58.811 29.630 25.01 4.59 35.74 3.53
4518 4596 7.704271 TGTTAATACACGTGAAACATTTTCCA 58.296 30.769 25.01 9.60 35.74 3.53
4519 4597 8.563289 TTGTTAATACACGTGAAACATTTTCC 57.437 30.769 25.01 7.57 35.74 3.13
4520 4598 8.205297 GCTTGTTAATACACGTGAAACATTTTC 58.795 33.333 25.01 11.44 35.74 2.29
4521 4599 7.918562 AGCTTGTTAATACACGTGAAACATTTT 59.081 29.630 25.01 11.02 35.74 1.82
4522 4600 7.378461 CAGCTTGTTAATACACGTGAAACATTT 59.622 33.333 25.01 11.30 35.74 2.32
4523 4601 6.855914 CAGCTTGTTAATACACGTGAAACATT 59.144 34.615 25.01 16.54 35.74 2.71
4524 4602 6.017440 ACAGCTTGTTAATACACGTGAAACAT 60.017 34.615 25.01 6.72 35.74 2.71
4525 4603 5.294799 ACAGCTTGTTAATACACGTGAAACA 59.705 36.000 25.01 21.10 35.74 2.83
4526 4604 5.744490 ACAGCTTGTTAATACACGTGAAAC 58.256 37.500 25.01 18.97 32.98 2.78
4527 4605 5.994887 ACAGCTTGTTAATACACGTGAAA 57.005 34.783 25.01 10.36 32.98 2.69
4528 4606 6.347079 GCTTACAGCTTGTTAATACACGTGAA 60.347 38.462 25.01 2.35 38.45 3.18
4529 4607 5.119588 GCTTACAGCTTGTTAATACACGTGA 59.880 40.000 25.01 6.34 38.45 4.35
4530 4608 5.107259 TGCTTACAGCTTGTTAATACACGTG 60.107 40.000 15.48 15.48 42.97 4.49
4531 4609 4.992319 TGCTTACAGCTTGTTAATACACGT 59.008 37.500 0.00 0.00 42.97 4.49
4532 4610 5.524511 TGCTTACAGCTTGTTAATACACG 57.475 39.130 0.00 0.00 42.97 4.49
4543 4621 7.040478 TGTCTATGAAAAACATGCTTACAGCTT 60.040 33.333 0.00 0.00 42.97 3.74
4544 4622 6.430925 TGTCTATGAAAAACATGCTTACAGCT 59.569 34.615 0.00 0.00 42.97 4.24
4545 4623 6.611381 TGTCTATGAAAAACATGCTTACAGC 58.389 36.000 0.00 0.00 42.82 4.40
4550 4628 9.090692 GCAATAATGTCTATGAAAAACATGCTT 57.909 29.630 0.00 0.00 39.77 3.91
4551 4629 7.433131 CGCAATAATGTCTATGAAAAACATGCT 59.567 33.333 0.00 0.00 39.77 3.79
4552 4630 7.220683 ACGCAATAATGTCTATGAAAAACATGC 59.779 33.333 0.00 0.00 39.77 4.06
4553 4631 8.619146 ACGCAATAATGTCTATGAAAAACATG 57.381 30.769 0.00 0.00 39.77 3.21
4554 4632 9.716507 GTACGCAATAATGTCTATGAAAAACAT 57.283 29.630 0.00 0.00 42.39 2.71
4555 4633 8.722394 TGTACGCAATAATGTCTATGAAAAACA 58.278 29.630 0.00 0.00 0.00 2.83
4556 4634 9.716507 ATGTACGCAATAATGTCTATGAAAAAC 57.283 29.630 0.00 0.00 0.00 2.43
4574 4652 9.203421 CCTAATGAAGATACATAAATGTACGCA 57.797 33.333 4.98 2.75 45.11 5.24
4575 4653 8.656849 CCCTAATGAAGATACATAAATGTACGC 58.343 37.037 4.98 1.73 45.11 4.42
4576 4654 9.923143 TCCCTAATGAAGATACATAAATGTACG 57.077 33.333 4.98 0.00 45.11 3.67
4579 4657 8.723365 TGGTCCCTAATGAAGATACATAAATGT 58.277 33.333 0.63 0.63 44.48 2.71
4580 4658 9.003658 GTGGTCCCTAATGAAGATACATAAATG 57.996 37.037 0.00 0.00 0.00 2.32
4581 4659 8.723365 TGTGGTCCCTAATGAAGATACATAAAT 58.277 33.333 0.00 0.00 0.00 1.40
4582 4660 8.096621 TGTGGTCCCTAATGAAGATACATAAA 57.903 34.615 0.00 0.00 0.00 1.40
4583 4661 7.684317 TGTGGTCCCTAATGAAGATACATAA 57.316 36.000 0.00 0.00 0.00 1.90
4584 4662 7.567250 TCTTGTGGTCCCTAATGAAGATACATA 59.433 37.037 0.00 0.00 0.00 2.29
4585 4663 6.386927 TCTTGTGGTCCCTAATGAAGATACAT 59.613 38.462 0.00 0.00 0.00 2.29
4586 4664 5.724370 TCTTGTGGTCCCTAATGAAGATACA 59.276 40.000 0.00 0.00 0.00 2.29
4587 4665 6.235231 TCTTGTGGTCCCTAATGAAGATAC 57.765 41.667 0.00 0.00 0.00 2.24
4588 4666 6.629515 CGTTCTTGTGGTCCCTAATGAAGATA 60.630 42.308 0.00 0.00 0.00 1.98
4589 4667 5.501156 GTTCTTGTGGTCCCTAATGAAGAT 58.499 41.667 0.00 0.00 0.00 2.40
4590 4668 4.562757 CGTTCTTGTGGTCCCTAATGAAGA 60.563 45.833 0.00 0.00 0.00 2.87
4591 4669 3.684788 CGTTCTTGTGGTCCCTAATGAAG 59.315 47.826 0.00 0.00 0.00 3.02
4592 4670 3.670625 CGTTCTTGTGGTCCCTAATGAA 58.329 45.455 0.00 0.00 0.00 2.57
4593 4671 2.614481 GCGTTCTTGTGGTCCCTAATGA 60.614 50.000 0.00 0.00 0.00 2.57
4594 4672 1.737793 GCGTTCTTGTGGTCCCTAATG 59.262 52.381 0.00 0.00 0.00 1.90
4595 4673 1.349688 TGCGTTCTTGTGGTCCCTAAT 59.650 47.619 0.00 0.00 0.00 1.73
4596 4674 0.759959 TGCGTTCTTGTGGTCCCTAA 59.240 50.000 0.00 0.00 0.00 2.69
4597 4675 0.034337 GTGCGTTCTTGTGGTCCCTA 59.966 55.000 0.00 0.00 0.00 3.53
4598 4676 1.227853 GTGCGTTCTTGTGGTCCCT 60.228 57.895 0.00 0.00 0.00 4.20
4599 4677 1.098712 TTGTGCGTTCTTGTGGTCCC 61.099 55.000 0.00 0.00 0.00 4.46
4600 4678 0.951558 ATTGTGCGTTCTTGTGGTCC 59.048 50.000 0.00 0.00 0.00 4.46
4601 4679 2.774439 AATTGTGCGTTCTTGTGGTC 57.226 45.000 0.00 0.00 0.00 4.02
4602 4680 3.003275 CACTAATTGTGCGTTCTTGTGGT 59.997 43.478 0.00 0.00 40.06 4.16
4603 4681 3.554524 CACTAATTGTGCGTTCTTGTGG 58.445 45.455 0.00 0.00 40.06 4.17
4615 4693 9.555727 AATACAAGTAAGACACACACTAATTGT 57.444 29.630 0.00 0.00 39.97 2.71
4617 4695 9.998106 AGAATACAAGTAAGACACACACTAATT 57.002 29.630 0.00 0.00 0.00 1.40
4618 4696 9.998106 AAGAATACAAGTAAGACACACACTAAT 57.002 29.630 0.00 0.00 0.00 1.73
4621 4699 9.826574 TTTAAGAATACAAGTAAGACACACACT 57.173 29.630 0.00 0.00 0.00 3.55
4649 4727 9.299963 GCAATGCTGTCAATTAATAATTGTGTA 57.700 29.630 21.02 13.85 46.46 2.90
4650 4728 7.818446 TGCAATGCTGTCAATTAATAATTGTGT 59.182 29.630 21.02 4.42 46.46 3.72
4651 4729 8.187354 TGCAATGCTGTCAATTAATAATTGTG 57.813 30.769 21.02 13.14 46.46 3.33
4652 4730 8.951787 ATGCAATGCTGTCAATTAATAATTGT 57.048 26.923 21.02 2.83 46.46 2.71
4659 4737 9.875675 GTTTAAAAATGCAATGCTGTCAATTAA 57.124 25.926 6.82 2.65 0.00 1.40
4660 4738 9.270640 AGTTTAAAAATGCAATGCTGTCAATTA 57.729 25.926 6.82 0.00 0.00 1.40
4661 4739 8.156994 AGTTTAAAAATGCAATGCTGTCAATT 57.843 26.923 6.82 0.00 0.00 2.32
4662 4740 7.733402 AGTTTAAAAATGCAATGCTGTCAAT 57.267 28.000 6.82 0.00 0.00 2.57
4663 4741 7.551035 AAGTTTAAAAATGCAATGCTGTCAA 57.449 28.000 6.82 0.00 0.00 3.18
4664 4742 7.551035 AAAGTTTAAAAATGCAATGCTGTCA 57.449 28.000 6.82 0.00 0.00 3.58
4665 4743 8.121708 TGAAAAGTTTAAAAATGCAATGCTGTC 58.878 29.630 6.82 0.00 0.00 3.51
4666 4744 7.983307 TGAAAAGTTTAAAAATGCAATGCTGT 58.017 26.923 6.82 0.00 0.00 4.40
4667 4745 8.838452 TTGAAAAGTTTAAAAATGCAATGCTG 57.162 26.923 6.82 0.00 0.00 4.41
4668 4746 8.130469 CCTTGAAAAGTTTAAAAATGCAATGCT 58.870 29.630 6.82 0.00 44.25 3.79
4669 4747 7.914871 ACCTTGAAAAGTTTAAAAATGCAATGC 59.085 29.630 0.00 0.00 44.25 3.56
4670 4748 9.224058 CACCTTGAAAAGTTTAAAAATGCAATG 57.776 29.630 0.00 0.00 44.25 2.82
4671 4749 8.955388 ACACCTTGAAAAGTTTAAAAATGCAAT 58.045 25.926 0.00 0.00 44.25 3.56
4672 4750 8.329203 ACACCTTGAAAAGTTTAAAAATGCAA 57.671 26.923 0.00 0.00 44.25 4.08
4673 4751 7.913674 ACACCTTGAAAAGTTTAAAAATGCA 57.086 28.000 0.00 0.00 44.25 3.96
4692 4770 9.303116 TGGTACACAATAATTTTGAATACACCT 57.697 29.630 0.00 0.00 0.00 4.00
4693 4771 9.915629 TTGGTACACAATAATTTTGAATACACC 57.084 29.630 0.00 0.00 39.29 4.16
4734 4812 9.685828 AGCACGTTTAACATGTTTAAATACATT 57.314 25.926 17.78 0.00 36.64 2.71
4735 4813 9.685828 AAGCACGTTTAACATGTTTAAATACAT 57.314 25.926 17.78 0.00 39.27 2.29
4736 4814 8.959058 CAAGCACGTTTAACATGTTTAAATACA 58.041 29.630 17.78 0.00 0.00 2.29
4737 4815 8.960075 ACAAGCACGTTTAACATGTTTAAATAC 58.040 29.630 17.78 3.55 0.00 1.89
4739 4817 7.995463 ACAAGCACGTTTAACATGTTTAAAT 57.005 28.000 17.78 3.08 0.00 1.40
4740 4818 8.396390 TCTACAAGCACGTTTAACATGTTTAAA 58.604 29.630 17.78 11.84 0.00 1.52
4741 4819 7.917597 TCTACAAGCACGTTTAACATGTTTAA 58.082 30.769 17.78 11.41 0.00 1.52
4742 4820 7.479897 TCTACAAGCACGTTTAACATGTTTA 57.520 32.000 17.78 4.48 0.00 2.01
4743 4821 6.366315 TCTACAAGCACGTTTAACATGTTT 57.634 33.333 17.78 0.95 0.00 2.83
4744 4822 5.994887 TCTACAAGCACGTTTAACATGTT 57.005 34.783 16.68 16.68 0.00 2.71
4745 4823 5.994887 TTCTACAAGCACGTTTAACATGT 57.005 34.783 0.00 0.00 0.00 3.21
4752 4830 8.561212 TGTTGTTATATTTCTACAAGCACGTTT 58.439 29.630 0.00 0.00 32.89 3.60
4753 4831 8.090250 TGTTGTTATATTTCTACAAGCACGTT 57.910 30.769 0.00 0.00 32.89 3.99
4754 4832 7.661127 TGTTGTTATATTTCTACAAGCACGT 57.339 32.000 0.00 0.00 32.89 4.49
4755 4833 9.554724 AATTGTTGTTATATTTCTACAAGCACG 57.445 29.630 10.44 0.00 34.29 5.34
4772 4850 9.877178 TGTTTAAGTCCACATAAAATTGTTGTT 57.123 25.926 0.00 0.00 0.00 2.83
4773 4851 9.528018 CTGTTTAAGTCCACATAAAATTGTTGT 57.472 29.630 0.00 0.00 0.00 3.32
4774 4852 9.528018 ACTGTTTAAGTCCACATAAAATTGTTG 57.472 29.630 0.00 0.00 31.64 3.33
4776 4854 9.744468 GAACTGTTTAAGTCCACATAAAATTGT 57.256 29.630 0.00 0.00 38.56 2.71
4777 4855 9.743057 TGAACTGTTTAAGTCCACATAAAATTG 57.257 29.630 0.00 0.00 38.56 2.32
4779 4857 9.744468 GTTGAACTGTTTAAGTCCACATAAAAT 57.256 29.630 0.00 0.00 38.56 1.82
4780 4858 7.911205 CGTTGAACTGTTTAAGTCCACATAAAA 59.089 33.333 0.00 0.00 38.56 1.52
4781 4859 7.066043 ACGTTGAACTGTTTAAGTCCACATAAA 59.934 33.333 0.00 0.00 38.56 1.40
4782 4860 6.539464 ACGTTGAACTGTTTAAGTCCACATAA 59.461 34.615 0.00 0.00 38.56 1.90
4783 4861 6.018588 CACGTTGAACTGTTTAAGTCCACATA 60.019 38.462 0.00 0.00 38.56 2.29
4784 4862 4.879545 ACGTTGAACTGTTTAAGTCCACAT 59.120 37.500 0.00 0.00 38.56 3.21
4785 4863 4.093703 CACGTTGAACTGTTTAAGTCCACA 59.906 41.667 0.00 0.00 38.56 4.17
4786 4864 4.093850 ACACGTTGAACTGTTTAAGTCCAC 59.906 41.667 0.00 0.00 38.56 4.02
4787 4865 4.255301 ACACGTTGAACTGTTTAAGTCCA 58.745 39.130 0.00 0.00 38.56 4.02
4788 4866 4.870221 ACACGTTGAACTGTTTAAGTCC 57.130 40.909 0.00 0.00 38.56 3.85
4789 4867 9.919348 TTTAATACACGTTGAACTGTTTAAGTC 57.081 29.630 0.00 0.00 38.56 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.