Multiple sequence alignment - TraesCS5D01G001500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G001500 chr5D 100.000 1482 0 0 1527 3008 1864151 1865632 0.000000e+00 2737.0
1 TraesCS5D01G001500 chr5D 100.000 1110 0 0 1 1110 1862625 1863734 0.000000e+00 2050.0
2 TraesCS5D01G001500 chr5D 100.000 394 0 0 3205 3598 1865829 1866222 0.000000e+00 728.0
3 TraesCS5D01G001500 chr5A 90.109 829 68 8 2190 3007 693599 694424 0.000000e+00 1064.0
4 TraesCS5D01G001500 chr5A 90.184 489 39 6 44 532 690950 691429 2.360000e-176 628.0
5 TraesCS5D01G001500 chr5A 83.115 687 59 39 1527 2177 692869 693534 1.120000e-159 573.0
6 TraesCS5D01G001500 chr5A 88.008 492 20 13 634 1110 692375 692842 2.440000e-151 545.0
7 TraesCS5D01G001500 chr5B 86.937 888 61 23 1527 2382 757226 758090 0.000000e+00 946.0
8 TraesCS5D01G001500 chr5B 87.437 597 36 17 2388 2948 758179 758772 0.000000e+00 651.0
9 TraesCS5D01G001500 chr5B 90.063 473 41 4 44 512 755934 756404 3.070000e-170 608.0
10 TraesCS5D01G001500 chr5B 86.827 539 22 21 598 1110 756674 757189 1.130000e-154 556.0
11 TraesCS5D01G001500 chr7B 89.189 74 8 0 1037 1110 179921535 179921462 3.820000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G001500 chr5D 1862625 1866222 3597 False 1838.333333 2737 100.000 1 3598 3 chr5D.!!$F1 3597
1 TraesCS5D01G001500 chr5A 690950 694424 3474 False 702.500000 1064 87.854 44 3007 4 chr5A.!!$F1 2963
2 TraesCS5D01G001500 chr5B 755934 758772 2838 False 690.250000 946 87.816 44 2948 4 chr5B.!!$F1 2904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 849 0.110373 GGTCGTCACGTTGGAATTGC 60.110 55.0 0.0 0.0 0.00 3.56 F
589 850 0.110373 GTCGTCACGTTGGAATTGCC 60.110 55.0 0.0 0.0 37.10 4.52 F
1984 2942 0.174845 TCCTCGGCTGGAAATACGTG 59.825 55.0 0.0 0.0 32.39 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 3144 0.104487 GCAGAGCAGAGCAGAGCATA 59.896 55.0 0.0 0.0 0.0 3.14 R
2186 3152 0.168568 GAAGCAAAGCAGAGCAGAGC 59.831 55.0 0.0 0.0 0.0 4.09 R
3386 4535 0.034756 AGTTACGAGCCATGTGTGCA 59.965 50.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.777802 CAATATCTCGAGTCAATGGCTAGT 58.222 41.667 13.13 0.00 0.00 2.57
24 25 5.637006 ATATCTCGAGTCAATGGCTAGTC 57.363 43.478 13.13 0.00 0.00 2.59
25 26 3.006112 TCTCGAGTCAATGGCTAGTCT 57.994 47.619 13.13 0.00 0.00 3.24
26 27 2.946329 TCTCGAGTCAATGGCTAGTCTC 59.054 50.000 13.13 0.00 0.00 3.36
27 28 2.025155 TCGAGTCAATGGCTAGTCTCC 58.975 52.381 0.00 0.00 0.00 3.71
28 29 2.028130 CGAGTCAATGGCTAGTCTCCT 58.972 52.381 0.00 0.00 0.00 3.69
29 30 2.428890 CGAGTCAATGGCTAGTCTCCTT 59.571 50.000 0.00 0.00 0.00 3.36
30 31 3.118956 CGAGTCAATGGCTAGTCTCCTTT 60.119 47.826 0.00 0.00 0.00 3.11
31 32 4.187694 GAGTCAATGGCTAGTCTCCTTTG 58.812 47.826 0.00 1.89 39.02 2.77
32 33 2.680339 GTCAATGGCTAGTCTCCTTTGC 59.320 50.000 0.00 0.00 38.14 3.68
33 34 2.305635 TCAATGGCTAGTCTCCTTTGCA 59.694 45.455 0.00 0.00 38.14 4.08
34 35 2.681848 CAATGGCTAGTCTCCTTTGCAG 59.318 50.000 0.00 0.00 33.77 4.41
35 36 0.615331 TGGCTAGTCTCCTTTGCAGG 59.385 55.000 0.00 0.00 42.50 4.85
79 80 4.224370 AGGCTCATTTCTTTGGCATGATTT 59.776 37.500 0.00 0.00 0.00 2.17
87 88 9.211485 CATTTCTTTGGCATGATTTACTTCTTT 57.789 29.630 0.00 0.00 0.00 2.52
88 89 9.783081 ATTTCTTTGGCATGATTTACTTCTTTT 57.217 25.926 0.00 0.00 0.00 2.27
89 90 9.612066 TTTCTTTGGCATGATTTACTTCTTTTT 57.388 25.926 0.00 0.00 0.00 1.94
105 106 8.209917 ACTTCTTTTTAGTGAACTTGACGATT 57.790 30.769 0.00 0.00 0.00 3.34
109 110 8.889717 TCTTTTTAGTGAACTTGACGATTTCTT 58.110 29.630 0.00 0.00 0.00 2.52
174 175 9.892130 AGTTTTAAATTATCCTTGAGATCGACT 57.108 29.630 0.00 0.00 36.33 4.18
189 194 6.488344 TGAGATCGACTGAGCTACTAAATGAT 59.512 38.462 0.00 0.00 41.92 2.45
341 347 2.170166 TCATGACACCAAAATGAGCCC 58.830 47.619 0.00 0.00 0.00 5.19
421 430 4.194640 GCTCAAATGCTCTGAACCTCATA 58.805 43.478 0.00 0.00 0.00 2.15
443 452 2.158667 ACAAGTCGAAATGTGGGGTCTT 60.159 45.455 3.73 0.00 0.00 3.01
457 466 3.010138 TGGGGTCTTTCGAAGATTTCCAT 59.990 43.478 0.00 0.00 40.18 3.41
470 479 6.933521 CGAAGATTTCCATGTCTAATGATCCT 59.066 38.462 0.00 0.00 0.00 3.24
486 495 5.172687 TGATCCTTGGTACATTGCTAACA 57.827 39.130 0.00 0.00 39.30 2.41
494 503 5.484715 TGGTACATTGCTAACAGTAGGTTC 58.515 41.667 0.00 0.00 40.96 3.62
507 516 4.141287 CAGTAGGTTCCCAAAACACATCA 58.859 43.478 0.00 0.00 0.00 3.07
525 534 4.339247 ACATCATTTTCATGATTCGGACCC 59.661 41.667 0.00 0.00 46.45 4.46
527 536 3.947196 TCATTTTCATGATTCGGACCCTG 59.053 43.478 0.00 0.00 34.22 4.45
528 537 3.433306 TTTTCATGATTCGGACCCTGT 57.567 42.857 0.00 0.00 0.00 4.00
529 538 4.561500 TTTTCATGATTCGGACCCTGTA 57.438 40.909 0.00 0.00 0.00 2.74
530 539 4.561500 TTTCATGATTCGGACCCTGTAA 57.438 40.909 0.00 0.00 0.00 2.41
545 557 5.063880 ACCCTGTAACATCTCACAGTTTTC 58.936 41.667 0.00 0.00 40.47 2.29
549 810 6.427853 CCTGTAACATCTCACAGTTTTCATGA 59.572 38.462 0.00 0.00 40.47 3.07
557 818 9.926751 CATCTCACAGTTTTCATGATAATACAC 57.073 33.333 0.00 0.00 0.00 2.90
558 819 8.185003 TCTCACAGTTTTCATGATAATACACG 57.815 34.615 0.00 0.00 0.00 4.49
562 823 7.374228 CACAGTTTTCATGATAATACACGCATC 59.626 37.037 0.00 0.00 0.00 3.91
564 825 5.590104 TTTCATGATAATACACGCATCCG 57.410 39.130 0.00 0.00 41.14 4.18
574 835 4.489249 CGCATCCGTTTAGGTCGT 57.511 55.556 0.00 0.00 41.99 4.34
575 836 2.285154 CGCATCCGTTTAGGTCGTC 58.715 57.895 0.00 0.00 41.99 4.20
576 837 0.457166 CGCATCCGTTTAGGTCGTCA 60.457 55.000 0.00 0.00 41.99 4.35
578 839 1.265568 CATCCGTTTAGGTCGTCACG 58.734 55.000 0.00 0.00 41.99 4.35
579 840 0.883833 ATCCGTTTAGGTCGTCACGT 59.116 50.000 0.00 0.00 41.99 4.49
580 841 0.667993 TCCGTTTAGGTCGTCACGTT 59.332 50.000 0.00 0.00 41.99 3.99
581 842 0.780002 CCGTTTAGGTCGTCACGTTG 59.220 55.000 0.00 0.00 34.51 4.10
582 843 0.780002 CGTTTAGGTCGTCACGTTGG 59.220 55.000 0.00 0.00 0.00 3.77
585 846 3.062042 GTTTAGGTCGTCACGTTGGAAT 58.938 45.455 0.00 0.00 0.00 3.01
586 847 3.389925 TTAGGTCGTCACGTTGGAATT 57.610 42.857 0.00 0.00 0.00 2.17
587 848 1.508632 AGGTCGTCACGTTGGAATTG 58.491 50.000 0.00 0.00 0.00 2.32
588 849 0.110373 GGTCGTCACGTTGGAATTGC 60.110 55.000 0.00 0.00 0.00 3.56
589 850 0.110373 GTCGTCACGTTGGAATTGCC 60.110 55.000 0.00 0.00 37.10 4.52
590 851 1.209127 CGTCACGTTGGAATTGCCC 59.791 57.895 0.00 0.00 34.97 5.36
591 852 1.234615 CGTCACGTTGGAATTGCCCT 61.235 55.000 0.00 0.00 34.97 5.19
592 853 1.816074 GTCACGTTGGAATTGCCCTA 58.184 50.000 0.00 0.00 34.97 3.53
657 1521 2.203126 GCAGGCGAATGGGAGGAG 60.203 66.667 0.00 0.00 0.00 3.69
668 1532 5.511545 GCGAATGGGAGGAGAATAACATAGT 60.512 44.000 0.00 0.00 0.00 2.12
723 1587 1.526917 GGATTGCTGATCGTGGGGG 60.527 63.158 0.00 0.00 35.49 5.40
724 1588 1.526887 GATTGCTGATCGTGGGGGA 59.473 57.895 0.00 0.00 0.00 4.81
752 1625 1.228003 ATCGTGGGCAAAACCGTCA 60.228 52.632 0.00 0.00 40.62 4.35
756 1629 1.527380 TGGGCAAAACCGTCACTCC 60.527 57.895 0.00 0.00 40.62 3.85
855 1744 1.560505 CACTTTTCCCCATTCCCCTG 58.439 55.000 0.00 0.00 0.00 4.45
866 1755 1.659035 ATTCCCCTGCCCTTCCATCC 61.659 60.000 0.00 0.00 0.00 3.51
867 1756 3.825623 CCCCTGCCCTTCCATCCC 61.826 72.222 0.00 0.00 0.00 3.85
868 1757 3.825623 CCCTGCCCTTCCATCCCC 61.826 72.222 0.00 0.00 0.00 4.81
869 1758 4.195334 CCTGCCCTTCCATCCCCG 62.195 72.222 0.00 0.00 0.00 5.73
870 1759 3.411517 CTGCCCTTCCATCCCCGT 61.412 66.667 0.00 0.00 0.00 5.28
871 1760 3.406595 CTGCCCTTCCATCCCCGTC 62.407 68.421 0.00 0.00 0.00 4.79
872 1761 3.090532 GCCCTTCCATCCCCGTCT 61.091 66.667 0.00 0.00 0.00 4.18
873 1762 3.108288 GCCCTTCCATCCCCGTCTC 62.108 68.421 0.00 0.00 0.00 3.36
874 1763 2.444256 CCCTTCCATCCCCGTCTCC 61.444 68.421 0.00 0.00 0.00 3.71
875 1764 2.797278 CCTTCCATCCCCGTCTCCG 61.797 68.421 0.00 0.00 0.00 4.63
876 1765 2.038329 TTCCATCCCCGTCTCCGT 59.962 61.111 0.00 0.00 0.00 4.69
877 1766 2.017559 CTTCCATCCCCGTCTCCGTC 62.018 65.000 0.00 0.00 0.00 4.79
982 1886 2.586792 CGGAGGGGAGCAAGAAGG 59.413 66.667 0.00 0.00 0.00 3.46
1551 2455 4.290155 CGTTTTTGTCCATCTTTGTCCTG 58.710 43.478 0.00 0.00 0.00 3.86
1555 2459 3.685139 TGTCCATCTTTGTCCTGACTC 57.315 47.619 0.00 0.00 0.00 3.36
1640 2544 4.806330 TCTTCGACAAGGTGTAAGTGATC 58.194 43.478 0.00 0.00 0.00 2.92
1645 2549 4.031765 CGACAAGGTGTAAGTGATCGATTG 59.968 45.833 0.00 0.00 0.00 2.67
1648 2552 5.109210 CAAGGTGTAAGTGATCGATTGCTA 58.891 41.667 0.00 0.00 0.00 3.49
1655 2559 5.791336 AAGTGATCGATTGCTAGACCATA 57.209 39.130 0.00 0.00 0.00 2.74
1657 2561 4.830046 AGTGATCGATTGCTAGACCATACT 59.170 41.667 0.00 0.00 0.00 2.12
1658 2562 4.920340 GTGATCGATTGCTAGACCATACTG 59.080 45.833 0.00 0.00 0.00 2.74
1659 2563 4.827284 TGATCGATTGCTAGACCATACTGA 59.173 41.667 0.00 0.00 0.00 3.41
1661 2565 5.791336 TCGATTGCTAGACCATACTGAAT 57.209 39.130 0.00 0.00 0.00 2.57
1705 2623 1.162698 CATGTTGCTACTGCTGCTGT 58.837 50.000 16.37 16.37 40.48 4.40
1706 2624 2.028203 TCATGTTGCTACTGCTGCTGTA 60.028 45.455 16.83 16.83 40.48 2.74
1707 2625 2.768253 TGTTGCTACTGCTGCTGTAT 57.232 45.000 17.86 0.00 40.48 2.29
1708 2626 2.621338 TGTTGCTACTGCTGCTGTATC 58.379 47.619 17.86 14.74 40.48 2.24
1711 2629 4.141959 TGTTGCTACTGCTGCTGTATCATA 60.142 41.667 19.18 11.58 40.48 2.15
1712 2630 4.879197 TGCTACTGCTGCTGTATCATAT 57.121 40.909 17.86 0.00 40.48 1.78
1713 2631 4.814147 TGCTACTGCTGCTGTATCATATC 58.186 43.478 17.86 6.21 40.48 1.63
1715 2633 5.046807 TGCTACTGCTGCTGTATCATATCAT 60.047 40.000 17.86 0.00 40.48 2.45
1746 2670 2.831333 ACTGTGTGCTCTGTTCTTCTG 58.169 47.619 0.00 0.00 0.00 3.02
1779 2712 2.032054 TGCTGCTGCTGCGTTATTATTC 59.968 45.455 23.38 0.00 43.34 1.75
1780 2713 2.032054 GCTGCTGCTGCGTTATTATTCA 59.968 45.455 15.65 0.00 43.34 2.57
1781 2714 3.611517 CTGCTGCTGCGTTATTATTCAC 58.388 45.455 11.21 0.00 43.34 3.18
1804 2740 5.048921 ACAAGAAGAATTGATGTGCTCTGTG 60.049 40.000 0.00 0.00 34.20 3.66
1816 2752 3.134458 GTGCTCTGTGCTCTGTTTTACT 58.866 45.455 3.20 0.00 43.37 2.24
1817 2753 3.185391 GTGCTCTGTGCTCTGTTTTACTC 59.815 47.826 3.20 0.00 43.37 2.59
1818 2754 3.070159 TGCTCTGTGCTCTGTTTTACTCT 59.930 43.478 3.20 0.00 43.37 3.24
1819 2755 3.431572 GCTCTGTGCTCTGTTTTACTCTG 59.568 47.826 0.00 0.00 38.95 3.35
1820 2756 4.626042 CTCTGTGCTCTGTTTTACTCTGT 58.374 43.478 0.00 0.00 0.00 3.41
1821 2757 5.023533 TCTGTGCTCTGTTTTACTCTGTT 57.976 39.130 0.00 0.00 0.00 3.16
1822 2758 5.428253 TCTGTGCTCTGTTTTACTCTGTTT 58.572 37.500 0.00 0.00 0.00 2.83
1838 2794 2.853594 CTGTTTGTGTGTGTCATTGTGC 59.146 45.455 0.00 0.00 0.00 4.57
1843 2799 3.209410 TGTGTGTGTCATTGTGCATGTA 58.791 40.909 0.00 0.00 34.06 2.29
1984 2942 0.174845 TCCTCGGCTGGAAATACGTG 59.825 55.000 0.00 0.00 32.39 4.49
2007 2965 4.881273 GTGCAACATGAACCTGTATCCATA 59.119 41.667 0.00 0.00 36.32 2.74
2014 2972 6.931281 ACATGAACCTGTATCCATATTCTTCG 59.069 38.462 0.00 0.00 0.00 3.79
2023 2981 5.741388 ATCCATATTCTTCGTTTCAGTGC 57.259 39.130 0.00 0.00 0.00 4.40
2024 2982 3.938963 TCCATATTCTTCGTTTCAGTGCC 59.061 43.478 0.00 0.00 0.00 5.01
2030 2988 1.734465 CTTCGTTTCAGTGCCCATCTC 59.266 52.381 0.00 0.00 0.00 2.75
2033 2991 1.338105 CGTTTCAGTGCCCATCTCTGA 60.338 52.381 0.00 0.00 41.86 3.27
2036 2994 2.704464 TCAGTGCCCATCTCTGATTG 57.296 50.000 0.00 0.00 39.57 2.67
2038 2996 1.064906 CAGTGCCCATCTCTGATTGGT 60.065 52.381 6.17 0.00 38.27 3.67
2046 3004 5.393461 GCCCATCTCTGATTGGTTTTGTAAG 60.393 44.000 6.17 0.00 0.00 2.34
2058 3020 7.504924 TTGGTTTTGTAAGTACTCAATCTGG 57.495 36.000 0.00 0.00 0.00 3.86
2060 3022 5.472137 GGTTTTGTAAGTACTCAATCTGGCA 59.528 40.000 0.00 0.00 0.00 4.92
2063 3025 7.759489 TTTGTAAGTACTCAATCTGGCAATT 57.241 32.000 0.00 0.00 0.00 2.32
2065 3027 6.237901 TGTAAGTACTCAATCTGGCAATTGT 58.762 36.000 7.40 6.55 37.77 2.71
2070 3032 4.922206 ACTCAATCTGGCAATTGTTCCTA 58.078 39.130 7.40 0.00 37.77 2.94
2093 3059 2.808543 GTGTTAGGTGTCTGCCTTTGAG 59.191 50.000 0.00 0.00 39.94 3.02
2143 3109 0.337773 ATCCTGGAGAGGTCAGAGCA 59.662 55.000 1.52 0.00 40.76 4.26
2146 3112 1.482954 CTGGAGAGGTCAGAGCATCA 58.517 55.000 1.66 0.00 37.82 3.07
2168 3134 1.270518 TGCCTCTCTCTTTGTGCTCAC 60.271 52.381 0.00 0.00 0.00 3.51
2177 3143 2.950975 TCTTTGTGCTCACATTGCTTCA 59.049 40.909 3.31 0.00 41.52 3.02
2178 3144 3.570975 TCTTTGTGCTCACATTGCTTCAT 59.429 39.130 3.31 0.00 41.52 2.57
2179 3145 4.761227 TCTTTGTGCTCACATTGCTTCATA 59.239 37.500 3.31 0.00 41.52 2.15
2180 3146 5.416639 TCTTTGTGCTCACATTGCTTCATAT 59.583 36.000 3.31 0.00 41.52 1.78
2181 3147 4.625972 TGTGCTCACATTGCTTCATATG 57.374 40.909 0.00 0.00 36.21 1.78
2183 3149 3.066342 GTGCTCACATTGCTTCATATGCT 59.934 43.478 0.00 0.00 0.00 3.79
2184 3150 3.314357 TGCTCACATTGCTTCATATGCTC 59.686 43.478 0.00 0.00 0.00 4.26
2186 3152 4.554919 GCTCACATTGCTTCATATGCTCTG 60.555 45.833 0.00 0.00 0.00 3.35
2187 3153 3.314357 TCACATTGCTTCATATGCTCTGC 59.686 43.478 0.00 0.40 0.00 4.26
2188 3154 3.315470 CACATTGCTTCATATGCTCTGCT 59.685 43.478 0.00 0.00 0.00 4.24
2191 3176 2.835027 TGCTTCATATGCTCTGCTCTG 58.165 47.619 0.00 0.00 0.00 3.35
2230 3247 4.392445 GGATCGAATCGCTAGCTACTCTTA 59.608 45.833 13.93 0.00 0.00 2.10
2231 3248 4.728917 TCGAATCGCTAGCTACTCTTAC 57.271 45.455 13.93 0.00 0.00 2.34
2238 3256 4.948621 TCGCTAGCTACTCTTACCTTCTTT 59.051 41.667 13.93 0.00 0.00 2.52
2313 3338 4.984161 GTGTGCTAACAAATTGAACATGCT 59.016 37.500 0.00 0.00 38.27 3.79
2319 3344 6.524586 GCTAACAAATTGAACATGCTACTGAC 59.475 38.462 0.00 0.00 0.00 3.51
2320 3345 6.639632 AACAAATTGAACATGCTACTGACT 57.360 33.333 0.00 0.00 0.00 3.41
2347 3372 7.604164 CCATCATAGTTTTATGCTACCCTACTG 59.396 40.741 0.00 0.00 37.23 2.74
2360 3385 2.836372 ACCCTACTGCCCTGTTAACTAC 59.164 50.000 7.22 0.00 0.00 2.73
2417 3525 2.288948 TGATGCATCACAAGGCAAAACC 60.289 45.455 25.42 0.00 46.57 3.27
2428 3536 4.021016 ACAAGGCAAAACCAAACTACAACA 60.021 37.500 0.00 0.00 43.14 3.33
2552 3677 2.267006 CTGTGGGCTGAGCACGAT 59.733 61.111 6.82 0.00 32.76 3.73
2687 3826 4.368543 AGCGTCGTTCCGTTCCCC 62.369 66.667 0.00 0.00 0.00 4.81
2799 3943 8.072238 TGTCGTTCATGTACATATAAGAATGC 57.928 34.615 8.32 9.62 0.00 3.56
2817 3961 2.422597 TGCGTGTCCACCAGAATAAAG 58.577 47.619 0.00 0.00 0.00 1.85
2831 3975 8.571336 CACCAGAATAAAGTCTTCATCAGTTTT 58.429 33.333 0.00 0.00 0.00 2.43
2877 4026 5.599999 ATCTCCACGACACTAGCTTAATT 57.400 39.130 0.00 0.00 0.00 1.40
2883 4032 6.036735 TCCACGACACTAGCTTAATTATTTGC 59.963 38.462 0.00 0.00 0.00 3.68
2923 4072 3.684908 TGTTGGTGTTATGCATGCTACT 58.315 40.909 20.33 6.24 0.00 2.57
2934 4083 1.945394 GCATGCTACTTCCATCAGGTG 59.055 52.381 11.37 0.00 35.89 4.00
2936 4085 3.201290 CATGCTACTTCCATCAGGTGAC 58.799 50.000 0.00 0.00 35.89 3.67
2953 4102 1.271001 TGACCATTGGTGAGCAGTGAG 60.271 52.381 14.44 1.95 35.25 3.51
2967 4116 3.826466 GCAGTGAGCACATCTTTTTACC 58.174 45.455 3.19 0.00 44.79 2.85
2969 4118 3.074412 AGTGAGCACATCTTTTTACCCG 58.926 45.455 3.19 0.00 0.00 5.28
2976 4125 4.069304 CACATCTTTTTACCCGGTCTGAA 58.931 43.478 0.00 0.00 0.00 3.02
2980 4129 2.642154 TTTTACCCGGTCTGAAGCAA 57.358 45.000 0.00 0.00 0.00 3.91
2981 4130 2.642154 TTTACCCGGTCTGAAGCAAA 57.358 45.000 0.00 0.00 0.00 3.68
2985 4134 1.613437 ACCCGGTCTGAAGCAAATTTG 59.387 47.619 14.03 14.03 0.00 2.32
2988 4137 2.351738 CCGGTCTGAAGCAAATTTGGTC 60.352 50.000 22.21 15.58 38.04 4.02
2990 4139 2.351738 GGTCTGAAGCAAATTTGGTCGG 60.352 50.000 22.21 18.57 38.04 4.79
2999 4148 7.926555 TGAAGCAAATTTGGTCGGTTTATTTAA 59.073 29.630 22.21 0.00 38.04 1.52
3002 4151 9.278978 AGCAAATTTGGTCGGTTTATTTAAATT 57.721 25.926 16.92 0.00 32.71 1.82
3007 4156 5.956642 TGGTCGGTTTATTTAAATTGGCTC 58.043 37.500 5.91 0.00 0.00 4.70
3227 4376 3.895704 ATTCAGGTGGGGTTTACAAGT 57.104 42.857 0.00 0.00 0.00 3.16
3228 4377 2.649531 TCAGGTGGGGTTTACAAGTG 57.350 50.000 0.00 0.00 0.00 3.16
3229 4378 2.128535 TCAGGTGGGGTTTACAAGTGA 58.871 47.619 0.00 0.00 0.00 3.41
3230 4379 2.105821 TCAGGTGGGGTTTACAAGTGAG 59.894 50.000 0.00 0.00 0.00 3.51
3231 4380 2.132686 AGGTGGGGTTTACAAGTGAGT 58.867 47.619 0.00 0.00 0.00 3.41
3232 4381 2.512476 AGGTGGGGTTTACAAGTGAGTT 59.488 45.455 0.00 0.00 0.00 3.01
3233 4382 3.717913 AGGTGGGGTTTACAAGTGAGTTA 59.282 43.478 0.00 0.00 0.00 2.24
3234 4383 4.352893 AGGTGGGGTTTACAAGTGAGTTAT 59.647 41.667 0.00 0.00 0.00 1.89
3235 4384 5.074804 GGTGGGGTTTACAAGTGAGTTATT 58.925 41.667 0.00 0.00 0.00 1.40
3236 4385 6.044637 AGGTGGGGTTTACAAGTGAGTTATTA 59.955 38.462 0.00 0.00 0.00 0.98
3237 4386 6.716173 GGTGGGGTTTACAAGTGAGTTATTAA 59.284 38.462 0.00 0.00 0.00 1.40
3238 4387 7.231115 GGTGGGGTTTACAAGTGAGTTATTAAA 59.769 37.037 0.00 0.00 0.00 1.52
3239 4388 8.077991 GTGGGGTTTACAAGTGAGTTATTAAAC 58.922 37.037 7.44 7.44 35.72 2.01
3241 4390 8.853126 GGGGTTTACAAGTGAGTTATTAAACTT 58.147 33.333 12.49 0.00 46.09 2.66
3276 4425 8.760980 TTGATAAAATAAATCCGGGATGAAGT 57.239 30.769 10.96 0.00 0.00 3.01
3277 4426 8.391075 TGATAAAATAAATCCGGGATGAAGTC 57.609 34.615 10.96 2.58 0.00 3.01
3278 4427 7.996066 TGATAAAATAAATCCGGGATGAAGTCA 59.004 33.333 10.96 4.98 0.00 3.41
3279 4428 8.940397 ATAAAATAAATCCGGGATGAAGTCAT 57.060 30.769 10.96 0.00 39.70 3.06
3280 4429 7.660030 AAAATAAATCCGGGATGAAGTCATT 57.340 32.000 10.96 1.69 36.57 2.57
3281 4430 6.639632 AATAAATCCGGGATGAAGTCATTG 57.360 37.500 10.96 0.00 36.57 2.82
3282 4431 3.931907 AATCCGGGATGAAGTCATTGA 57.068 42.857 10.96 0.00 36.57 2.57
3283 4432 3.931907 ATCCGGGATGAAGTCATTGAA 57.068 42.857 9.17 0.00 36.57 2.69
3284 4433 2.985896 TCCGGGATGAAGTCATTGAAC 58.014 47.619 0.00 0.00 36.57 3.18
3285 4434 1.665679 CCGGGATGAAGTCATTGAACG 59.334 52.381 0.00 0.00 36.57 3.95
3286 4435 1.665679 CGGGATGAAGTCATTGAACGG 59.334 52.381 0.00 0.00 36.57 4.44
3287 4436 2.676750 CGGGATGAAGTCATTGAACGGA 60.677 50.000 0.00 0.00 36.57 4.69
3288 4437 3.343617 GGGATGAAGTCATTGAACGGAA 58.656 45.455 0.00 0.00 36.57 4.30
3289 4438 3.756434 GGGATGAAGTCATTGAACGGAAA 59.244 43.478 0.00 0.00 36.57 3.13
3290 4439 4.217550 GGGATGAAGTCATTGAACGGAAAA 59.782 41.667 0.00 0.00 36.57 2.29
3291 4440 5.105756 GGGATGAAGTCATTGAACGGAAAAT 60.106 40.000 0.00 0.00 36.57 1.82
3292 4441 5.801947 GGATGAAGTCATTGAACGGAAAATG 59.198 40.000 0.00 0.00 36.57 2.32
3293 4442 5.766150 TGAAGTCATTGAACGGAAAATGT 57.234 34.783 6.23 0.00 35.66 2.71
3294 4443 5.757886 TGAAGTCATTGAACGGAAAATGTC 58.242 37.500 6.23 2.27 35.66 3.06
3295 4444 4.404507 AGTCATTGAACGGAAAATGTCG 57.595 40.909 6.23 0.00 35.66 4.35
3296 4445 3.813166 AGTCATTGAACGGAAAATGTCGT 59.187 39.130 6.23 0.00 41.71 4.34
3297 4446 4.084013 AGTCATTGAACGGAAAATGTCGTC 60.084 41.667 6.23 0.00 38.78 4.20
3298 4447 3.810386 TCATTGAACGGAAAATGTCGTCA 59.190 39.130 6.23 0.00 38.78 4.35
3299 4448 3.595709 TTGAACGGAAAATGTCGTCAC 57.404 42.857 0.00 0.00 38.78 3.67
3300 4449 1.523515 TGAACGGAAAATGTCGTCACG 59.476 47.619 0.00 0.00 38.78 4.35
3301 4450 0.863144 AACGGAAAATGTCGTCACGG 59.137 50.000 0.00 0.00 38.78 4.94
3302 4451 1.131826 CGGAAAATGTCGTCACGGC 59.868 57.895 0.00 0.00 0.00 5.68
3315 4464 2.696989 TCACGGCATGACAATGATCT 57.303 45.000 0.00 0.00 35.67 2.75
3316 4465 3.817709 TCACGGCATGACAATGATCTA 57.182 42.857 0.00 0.00 35.67 1.98
3317 4466 3.721035 TCACGGCATGACAATGATCTAG 58.279 45.455 0.00 0.00 35.67 2.43
3318 4467 2.804527 CACGGCATGACAATGATCTAGG 59.195 50.000 0.00 0.00 35.67 3.02
3319 4468 2.700371 ACGGCATGACAATGATCTAGGA 59.300 45.455 0.00 0.00 35.67 2.94
3320 4469 3.134623 ACGGCATGACAATGATCTAGGAA 59.865 43.478 0.00 0.00 35.67 3.36
3321 4470 4.129380 CGGCATGACAATGATCTAGGAAA 58.871 43.478 0.00 0.00 35.67 3.13
3322 4471 4.576053 CGGCATGACAATGATCTAGGAAAA 59.424 41.667 0.00 0.00 35.67 2.29
3323 4472 5.240183 CGGCATGACAATGATCTAGGAAAAT 59.760 40.000 0.00 0.00 35.67 1.82
3324 4473 6.238842 CGGCATGACAATGATCTAGGAAAATT 60.239 38.462 0.00 0.00 35.67 1.82
3325 4474 6.921857 GGCATGACAATGATCTAGGAAAATTG 59.078 38.462 0.00 0.00 35.67 2.32
3326 4475 6.420008 GCATGACAATGATCTAGGAAAATTGC 59.580 38.462 0.00 0.00 35.67 3.56
3327 4476 6.122850 TGACAATGATCTAGGAAAATTGCG 57.877 37.500 0.00 0.00 32.65 4.85
3328 4477 5.647658 TGACAATGATCTAGGAAAATTGCGT 59.352 36.000 0.00 0.00 32.65 5.24
3329 4478 6.821160 TGACAATGATCTAGGAAAATTGCGTA 59.179 34.615 0.00 0.00 32.65 4.42
3330 4479 7.335673 TGACAATGATCTAGGAAAATTGCGTAA 59.664 33.333 0.00 0.00 32.65 3.18
3331 4480 7.697691 ACAATGATCTAGGAAAATTGCGTAAG 58.302 34.615 0.00 0.00 32.65 2.34
3332 4481 7.552687 ACAATGATCTAGGAAAATTGCGTAAGA 59.447 33.333 0.00 0.00 41.00 2.10
3333 4482 8.397906 CAATGATCTAGGAAAATTGCGTAAGAA 58.602 33.333 0.00 0.00 43.02 2.52
3334 4483 7.915293 TGATCTAGGAAAATTGCGTAAGAAA 57.085 32.000 0.00 0.00 40.87 2.52
3346 4495 7.623268 ATTGCGTAAGAAATGTGAAAGAAAC 57.377 32.000 0.00 0.00 46.26 2.78
3347 4496 5.516090 TGCGTAAGAAATGTGAAAGAAACC 58.484 37.500 0.00 0.00 43.02 3.27
3348 4497 5.298276 TGCGTAAGAAATGTGAAAGAAACCT 59.702 36.000 0.00 0.00 43.02 3.50
3349 4498 6.183360 TGCGTAAGAAATGTGAAAGAAACCTT 60.183 34.615 0.00 0.00 43.02 3.50
3350 4499 6.142320 GCGTAAGAAATGTGAAAGAAACCTTG 59.858 38.462 0.00 0.00 43.02 3.61
3351 4500 7.193595 CGTAAGAAATGTGAAAGAAACCTTGT 58.806 34.615 0.00 0.00 43.02 3.16
3352 4501 8.339714 CGTAAGAAATGTGAAAGAAACCTTGTA 58.660 33.333 0.00 0.00 43.02 2.41
3356 4505 9.533253 AGAAATGTGAAAGAAACCTTGTAATTG 57.467 29.630 0.00 0.00 0.00 2.32
3357 4506 7.713764 AATGTGAAAGAAACCTTGTAATTGC 57.286 32.000 0.00 0.00 0.00 3.56
3358 4507 6.214191 TGTGAAAGAAACCTTGTAATTGCA 57.786 33.333 0.00 0.00 0.00 4.08
3359 4508 6.815089 TGTGAAAGAAACCTTGTAATTGCAT 58.185 32.000 0.00 0.00 0.00 3.96
3360 4509 6.922957 TGTGAAAGAAACCTTGTAATTGCATC 59.077 34.615 0.00 0.00 0.00 3.91
3361 4510 6.922957 GTGAAAGAAACCTTGTAATTGCATCA 59.077 34.615 0.00 0.00 0.00 3.07
3362 4511 7.599998 GTGAAAGAAACCTTGTAATTGCATCAT 59.400 33.333 0.00 0.00 0.00 2.45
3363 4512 7.599621 TGAAAGAAACCTTGTAATTGCATCATG 59.400 33.333 0.00 0.00 0.00 3.07
3364 4513 6.594788 AGAAACCTTGTAATTGCATCATGT 57.405 33.333 0.00 0.00 0.00 3.21
3365 4514 6.996509 AGAAACCTTGTAATTGCATCATGTT 58.003 32.000 0.00 0.00 0.00 2.71
3366 4515 7.092716 AGAAACCTTGTAATTGCATCATGTTC 58.907 34.615 0.00 0.00 0.00 3.18
3367 4516 5.981088 ACCTTGTAATTGCATCATGTTCA 57.019 34.783 0.00 0.00 0.00 3.18
3368 4517 5.957798 ACCTTGTAATTGCATCATGTTCAG 58.042 37.500 0.00 0.00 0.00 3.02
3369 4518 5.711506 ACCTTGTAATTGCATCATGTTCAGA 59.288 36.000 0.00 0.00 0.00 3.27
3370 4519 6.209192 ACCTTGTAATTGCATCATGTTCAGAA 59.791 34.615 0.00 0.00 0.00 3.02
3371 4520 6.750501 CCTTGTAATTGCATCATGTTCAGAAG 59.249 38.462 0.00 0.00 0.00 2.85
3372 4521 6.198650 TGTAATTGCATCATGTTCAGAAGG 57.801 37.500 0.00 0.00 0.00 3.46
3373 4522 5.945191 TGTAATTGCATCATGTTCAGAAGGA 59.055 36.000 0.00 0.00 0.00 3.36
3374 4523 4.978083 ATTGCATCATGTTCAGAAGGAC 57.022 40.909 0.00 0.00 0.00 3.85
3375 4524 3.421919 TGCATCATGTTCAGAAGGACA 57.578 42.857 0.00 0.00 0.00 4.02
3376 4525 3.959293 TGCATCATGTTCAGAAGGACAT 58.041 40.909 0.00 0.00 0.00 3.06
3377 4526 5.101648 TGCATCATGTTCAGAAGGACATA 57.898 39.130 0.00 0.00 0.00 2.29
3378 4527 5.687780 TGCATCATGTTCAGAAGGACATAT 58.312 37.500 0.00 0.00 0.00 1.78
3379 4528 5.529800 TGCATCATGTTCAGAAGGACATATG 59.470 40.000 0.00 0.00 0.00 1.78
3380 4529 5.761726 GCATCATGTTCAGAAGGACATATGA 59.238 40.000 10.38 0.00 0.00 2.15
3381 4530 6.430308 GCATCATGTTCAGAAGGACATATGAT 59.570 38.462 10.38 0.00 35.17 2.45
3382 4531 7.040617 GCATCATGTTCAGAAGGACATATGATT 60.041 37.037 10.38 0.95 33.22 2.57
3383 4532 8.504815 CATCATGTTCAGAAGGACATATGATTC 58.495 37.037 10.38 10.28 33.22 2.52
3384 4533 6.994496 TCATGTTCAGAAGGACATATGATTCC 59.006 38.462 10.38 7.00 0.00 3.01
3385 4534 5.684704 TGTTCAGAAGGACATATGATTCCC 58.315 41.667 10.38 5.05 31.51 3.97
3386 4535 5.429762 TGTTCAGAAGGACATATGATTCCCT 59.570 40.000 10.38 7.24 31.51 4.20
3387 4536 5.557576 TCAGAAGGACATATGATTCCCTG 57.442 43.478 10.38 10.23 31.51 4.45
3388 4537 4.070716 CAGAAGGACATATGATTCCCTGC 58.929 47.826 10.38 8.59 31.51 4.85
3389 4538 3.718434 AGAAGGACATATGATTCCCTGCA 59.282 43.478 10.38 0.00 31.51 4.41
3390 4539 3.498774 AGGACATATGATTCCCTGCAC 57.501 47.619 10.38 0.00 31.51 4.57
3391 4540 2.779430 AGGACATATGATTCCCTGCACA 59.221 45.455 10.38 0.00 31.51 4.57
3392 4541 2.880890 GGACATATGATTCCCTGCACAC 59.119 50.000 10.38 0.00 0.00 3.82
3393 4542 3.544684 GACATATGATTCCCTGCACACA 58.455 45.455 10.38 0.00 0.00 3.72
3394 4543 4.139786 GACATATGATTCCCTGCACACAT 58.860 43.478 10.38 0.00 0.00 3.21
3395 4544 3.887110 ACATATGATTCCCTGCACACATG 59.113 43.478 10.38 0.00 0.00 3.21
3396 4545 1.771565 ATGATTCCCTGCACACATGG 58.228 50.000 0.00 0.00 33.13 3.66
3397 4546 0.966875 TGATTCCCTGCACACATGGC 60.967 55.000 0.00 0.00 31.98 4.40
3398 4547 0.682209 GATTCCCTGCACACATGGCT 60.682 55.000 0.00 0.00 31.98 4.75
3399 4548 0.682209 ATTCCCTGCACACATGGCTC 60.682 55.000 0.00 0.00 31.98 4.70
3400 4549 3.129502 CCCTGCACACATGGCTCG 61.130 66.667 0.00 0.00 0.00 5.03
3401 4550 2.359107 CCTGCACACATGGCTCGT 60.359 61.111 0.00 0.00 0.00 4.18
3402 4551 1.079197 CCTGCACACATGGCTCGTA 60.079 57.895 0.00 0.00 0.00 3.43
3403 4552 0.673333 CCTGCACACATGGCTCGTAA 60.673 55.000 0.00 0.00 0.00 3.18
3404 4553 0.443869 CTGCACACATGGCTCGTAAC 59.556 55.000 0.00 0.00 0.00 2.50
3405 4554 0.034756 TGCACACATGGCTCGTAACT 59.965 50.000 0.00 0.00 0.00 2.24
3406 4555 1.156736 GCACACATGGCTCGTAACTT 58.843 50.000 0.00 0.00 0.00 2.66
3407 4556 1.535462 GCACACATGGCTCGTAACTTT 59.465 47.619 0.00 0.00 0.00 2.66
3408 4557 2.031157 GCACACATGGCTCGTAACTTTT 60.031 45.455 0.00 0.00 0.00 2.27
3409 4558 3.550030 GCACACATGGCTCGTAACTTTTT 60.550 43.478 0.00 0.00 0.00 1.94
3432 4581 9.950680 TTTTTCTTTGAGAAGCACACTTAATAG 57.049 29.630 0.00 0.00 35.37 1.73
3433 4582 8.677148 TTTCTTTGAGAAGCACACTTAATAGT 57.323 30.769 0.00 0.00 35.37 2.12
3434 4583 7.891183 TCTTTGAGAAGCACACTTAATAGTC 57.109 36.000 0.00 0.00 35.82 2.59
3435 4584 6.874134 TCTTTGAGAAGCACACTTAATAGTCC 59.126 38.462 0.00 0.00 35.82 3.85
3436 4585 4.744570 TGAGAAGCACACTTAATAGTCCG 58.255 43.478 0.00 0.00 35.82 4.79
3437 4586 4.461431 TGAGAAGCACACTTAATAGTCCGA 59.539 41.667 0.00 0.00 35.82 4.55
3438 4587 5.000012 AGAAGCACACTTAATAGTCCGAG 58.000 43.478 0.00 0.00 35.82 4.63
3439 4588 4.463186 AGAAGCACACTTAATAGTCCGAGT 59.537 41.667 0.00 0.00 35.82 4.18
3440 4589 4.803098 AGCACACTTAATAGTCCGAGTT 57.197 40.909 0.00 0.00 30.26 3.01
3441 4590 5.909621 AGCACACTTAATAGTCCGAGTTA 57.090 39.130 0.00 0.00 30.26 2.24
3442 4591 5.648572 AGCACACTTAATAGTCCGAGTTAC 58.351 41.667 0.00 0.00 30.26 2.50
3443 4592 5.418209 AGCACACTTAATAGTCCGAGTTACT 59.582 40.000 0.00 0.00 30.26 2.24
3444 4593 5.742926 GCACACTTAATAGTCCGAGTTACTC 59.257 44.000 1.64 1.64 30.26 2.59
3445 4594 6.624423 GCACACTTAATAGTCCGAGTTACTCA 60.624 42.308 13.14 0.00 30.26 3.41
3446 4595 6.746364 CACACTTAATAGTCCGAGTTACTCAC 59.254 42.308 13.14 4.06 30.26 3.51
3447 4596 6.432162 ACACTTAATAGTCCGAGTTACTCACA 59.568 38.462 13.14 0.00 30.26 3.58
3448 4597 7.122353 ACACTTAATAGTCCGAGTTACTCACAT 59.878 37.037 13.14 0.00 30.26 3.21
3449 4598 7.974501 CACTTAATAGTCCGAGTTACTCACATT 59.025 37.037 13.14 8.66 30.26 2.71
3450 4599 8.529476 ACTTAATAGTCCGAGTTACTCACATTT 58.471 33.333 13.14 4.84 0.00 2.32
3451 4600 8.922058 TTAATAGTCCGAGTTACTCACATTTC 57.078 34.615 13.14 0.00 0.00 2.17
3452 4601 4.866508 AGTCCGAGTTACTCACATTTCA 57.133 40.909 13.14 0.00 0.00 2.69
3453 4602 4.810790 AGTCCGAGTTACTCACATTTCAG 58.189 43.478 13.14 0.00 0.00 3.02
3454 4603 4.523173 AGTCCGAGTTACTCACATTTCAGA 59.477 41.667 13.14 0.00 0.00 3.27
3455 4604 5.010719 AGTCCGAGTTACTCACATTTCAGAA 59.989 40.000 13.14 0.00 0.00 3.02
3456 4605 5.346281 GTCCGAGTTACTCACATTTCAGAAG 59.654 44.000 13.14 0.00 0.00 2.85
3457 4606 4.627467 CCGAGTTACTCACATTTCAGAAGG 59.373 45.833 13.14 0.00 0.00 3.46
3458 4607 4.627467 CGAGTTACTCACATTTCAGAAGGG 59.373 45.833 13.14 0.00 0.00 3.95
3459 4608 4.327680 AGTTACTCACATTTCAGAAGGGC 58.672 43.478 0.00 0.00 0.00 5.19
3460 4609 4.042187 AGTTACTCACATTTCAGAAGGGCT 59.958 41.667 0.00 0.00 0.00 5.19
3461 4610 5.248477 AGTTACTCACATTTCAGAAGGGCTA 59.752 40.000 0.00 0.00 0.00 3.93
3462 4611 4.640771 ACTCACATTTCAGAAGGGCTAA 57.359 40.909 0.00 0.00 0.00 3.09
3463 4612 5.184892 ACTCACATTTCAGAAGGGCTAAT 57.815 39.130 0.00 0.00 0.00 1.73
3464 4613 5.574188 ACTCACATTTCAGAAGGGCTAATT 58.426 37.500 0.00 0.00 0.00 1.40
3465 4614 6.012745 ACTCACATTTCAGAAGGGCTAATTT 58.987 36.000 0.00 0.00 0.00 1.82
3466 4615 7.175104 ACTCACATTTCAGAAGGGCTAATTTA 58.825 34.615 0.00 0.00 0.00 1.40
3467 4616 7.121315 ACTCACATTTCAGAAGGGCTAATTTAC 59.879 37.037 0.00 0.00 0.00 2.01
3468 4617 7.175104 TCACATTTCAGAAGGGCTAATTTACT 58.825 34.615 0.00 0.00 0.00 2.24
3469 4618 7.669722 TCACATTTCAGAAGGGCTAATTTACTT 59.330 33.333 0.00 0.00 0.00 2.24
3470 4619 8.956426 CACATTTCAGAAGGGCTAATTTACTTA 58.044 33.333 0.00 0.00 0.00 2.24
3471 4620 9.178758 ACATTTCAGAAGGGCTAATTTACTTAG 57.821 33.333 0.00 0.00 39.96 2.18
3472 4621 8.624776 CATTTCAGAAGGGCTAATTTACTTAGG 58.375 37.037 0.00 0.00 37.82 2.69
3473 4622 6.886178 TCAGAAGGGCTAATTTACTTAGGT 57.114 37.500 0.00 0.00 37.82 3.08
3474 4623 7.266905 TCAGAAGGGCTAATTTACTTAGGTT 57.733 36.000 0.00 0.00 37.82 3.50
3475 4624 7.110155 TCAGAAGGGCTAATTTACTTAGGTTG 58.890 38.462 0.00 0.00 37.82 3.77
3476 4625 6.884836 CAGAAGGGCTAATTTACTTAGGTTGT 59.115 38.462 0.00 0.00 37.82 3.32
3477 4626 6.884836 AGAAGGGCTAATTTACTTAGGTTGTG 59.115 38.462 0.00 0.00 37.82 3.33
3478 4627 6.382919 AGGGCTAATTTACTTAGGTTGTGA 57.617 37.500 0.00 0.00 37.82 3.58
3479 4628 6.970191 AGGGCTAATTTACTTAGGTTGTGAT 58.030 36.000 0.00 0.00 37.82 3.06
3480 4629 7.410991 AGGGCTAATTTACTTAGGTTGTGATT 58.589 34.615 0.00 0.00 37.82 2.57
3481 4630 7.556635 AGGGCTAATTTACTTAGGTTGTGATTC 59.443 37.037 0.00 0.00 37.82 2.52
3482 4631 7.556635 GGGCTAATTTACTTAGGTTGTGATTCT 59.443 37.037 0.00 0.00 37.82 2.40
3483 4632 8.398665 GGCTAATTTACTTAGGTTGTGATTCTG 58.601 37.037 0.00 0.00 37.82 3.02
3484 4633 9.162764 GCTAATTTACTTAGGTTGTGATTCTGA 57.837 33.333 0.00 0.00 37.82 3.27
3487 4636 8.738645 ATTTACTTAGGTTGTGATTCTGATCC 57.261 34.615 0.00 0.00 0.00 3.36
3488 4637 5.762179 ACTTAGGTTGTGATTCTGATCCA 57.238 39.130 0.00 0.00 0.00 3.41
3489 4638 5.491982 ACTTAGGTTGTGATTCTGATCCAC 58.508 41.667 0.00 0.00 0.00 4.02
3490 4639 5.013079 ACTTAGGTTGTGATTCTGATCCACA 59.987 40.000 8.07 8.07 0.00 4.17
3491 4640 4.371624 AGGTTGTGATTCTGATCCACAA 57.628 40.909 16.32 16.32 34.22 3.33
3492 4641 4.074970 AGGTTGTGATTCTGATCCACAAC 58.925 43.478 28.51 28.51 43.73 3.32
3493 4642 3.820467 GGTTGTGATTCTGATCCACAACA 59.180 43.478 32.42 14.28 44.72 3.33
3494 4643 4.320494 GGTTGTGATTCTGATCCACAACAC 60.320 45.833 32.42 24.77 44.72 3.32
3495 4644 4.084011 TGTGATTCTGATCCACAACACA 57.916 40.909 9.29 0.00 35.24 3.72
3496 4645 4.654915 TGTGATTCTGATCCACAACACAT 58.345 39.130 9.29 0.00 33.22 3.21
3497 4646 4.456566 TGTGATTCTGATCCACAACACATG 59.543 41.667 9.29 0.00 33.22 3.21
3498 4647 4.456911 GTGATTCTGATCCACAACACATGT 59.543 41.667 0.00 0.00 45.34 3.21
3507 4656 1.250328 ACAACACATGTGGCATCTGG 58.750 50.000 28.64 8.42 41.93 3.86
3508 4657 1.250328 CAACACATGTGGCATCTGGT 58.750 50.000 28.64 3.06 34.19 4.00
3509 4658 1.614903 CAACACATGTGGCATCTGGTT 59.385 47.619 28.64 9.32 34.19 3.67
3510 4659 1.999648 ACACATGTGGCATCTGGTTT 58.000 45.000 28.64 1.52 34.19 3.27
3511 4660 1.888512 ACACATGTGGCATCTGGTTTC 59.111 47.619 28.64 0.00 34.19 2.78
3512 4661 1.887854 CACATGTGGCATCTGGTTTCA 59.112 47.619 18.51 0.00 0.00 2.69
3513 4662 1.888512 ACATGTGGCATCTGGTTTCAC 59.111 47.619 0.00 0.00 0.00 3.18
3514 4663 1.887854 CATGTGGCATCTGGTTTCACA 59.112 47.619 0.00 0.00 41.64 3.58
3515 4664 2.291209 TGTGGCATCTGGTTTCACAT 57.709 45.000 0.00 0.00 34.01 3.21
3516 4665 1.887854 TGTGGCATCTGGTTTCACATG 59.112 47.619 0.00 0.00 34.01 3.21
3517 4666 0.889994 TGGCATCTGGTTTCACATGC 59.110 50.000 0.00 0.00 42.21 4.06
3518 4667 1.180029 GGCATCTGGTTTCACATGCT 58.820 50.000 6.58 0.00 42.45 3.79
3519 4668 1.135199 GGCATCTGGTTTCACATGCTG 60.135 52.381 6.58 0.00 42.45 4.41
3520 4669 1.814394 GCATCTGGTTTCACATGCTGA 59.186 47.619 0.00 0.00 40.57 4.26
3521 4670 2.426024 GCATCTGGTTTCACATGCTGAT 59.574 45.455 0.00 0.00 40.57 2.90
3522 4671 3.488721 GCATCTGGTTTCACATGCTGATC 60.489 47.826 0.00 0.00 40.57 2.92
3523 4672 3.421919 TCTGGTTTCACATGCTGATCA 57.578 42.857 0.00 0.00 0.00 2.92
3524 4673 3.959293 TCTGGTTTCACATGCTGATCAT 58.041 40.909 0.00 0.00 35.31 2.45
3525 4674 4.338012 TCTGGTTTCACATGCTGATCATT 58.662 39.130 0.00 0.00 31.79 2.57
3526 4675 4.768448 TCTGGTTTCACATGCTGATCATTT 59.232 37.500 0.00 0.00 31.79 2.32
3527 4676 5.945191 TCTGGTTTCACATGCTGATCATTTA 59.055 36.000 0.00 0.00 31.79 1.40
3528 4677 5.953183 TGGTTTCACATGCTGATCATTTAC 58.047 37.500 0.00 0.00 31.79 2.01
3529 4678 5.476254 TGGTTTCACATGCTGATCATTTACA 59.524 36.000 0.00 0.00 31.79 2.41
3530 4679 6.153170 TGGTTTCACATGCTGATCATTTACAT 59.847 34.615 0.00 0.00 31.79 2.29
3531 4680 7.037438 GGTTTCACATGCTGATCATTTACATT 58.963 34.615 0.00 0.00 31.79 2.71
3532 4681 8.190122 GGTTTCACATGCTGATCATTTACATTA 58.810 33.333 0.00 0.00 31.79 1.90
3533 4682 9.740239 GTTTCACATGCTGATCATTTACATTAT 57.260 29.630 0.00 0.00 31.79 1.28
3562 4711 6.805713 CAACTTATGTTGTTGTTTCCTTCCT 58.194 36.000 12.21 0.00 46.08 3.36
3563 4712 6.635030 ACTTATGTTGTTGTTTCCTTCCTC 57.365 37.500 0.00 0.00 0.00 3.71
3564 4713 6.126409 ACTTATGTTGTTGTTTCCTTCCTCA 58.874 36.000 0.00 0.00 0.00 3.86
3565 4714 6.263168 ACTTATGTTGTTGTTTCCTTCCTCAG 59.737 38.462 0.00 0.00 0.00 3.35
3566 4715 3.287222 TGTTGTTGTTTCCTTCCTCAGG 58.713 45.455 0.00 0.00 45.64 3.86
3567 4716 2.623416 GTTGTTGTTTCCTTCCTCAGGG 59.377 50.000 0.00 0.00 44.12 4.45
3568 4717 1.850345 TGTTGTTTCCTTCCTCAGGGT 59.150 47.619 0.00 0.00 44.12 4.34
3569 4718 2.230660 GTTGTTTCCTTCCTCAGGGTG 58.769 52.381 0.00 0.00 44.12 4.61
3570 4719 0.771127 TGTTTCCTTCCTCAGGGTGG 59.229 55.000 0.00 0.00 44.12 4.61
3571 4720 0.038310 GTTTCCTTCCTCAGGGTGGG 59.962 60.000 0.00 0.00 44.12 4.61
3572 4721 0.104144 TTTCCTTCCTCAGGGTGGGA 60.104 55.000 0.00 0.00 44.12 4.37
3573 4722 0.104144 TTCCTTCCTCAGGGTGGGAA 60.104 55.000 8.31 8.31 44.12 3.97
3574 4723 0.104144 TCCTTCCTCAGGGTGGGAAA 60.104 55.000 0.00 0.00 44.12 3.13
3575 4724 0.329596 CCTTCCTCAGGGTGGGAAAG 59.670 60.000 0.00 0.00 40.53 2.62
3576 4725 1.362224 CTTCCTCAGGGTGGGAAAGA 58.638 55.000 0.00 0.00 40.53 2.52
3577 4726 1.705186 CTTCCTCAGGGTGGGAAAGAA 59.295 52.381 0.00 0.00 40.53 2.52
3578 4727 2.059756 TCCTCAGGGTGGGAAAGAAT 57.940 50.000 0.00 0.00 0.00 2.40
3579 4728 1.635487 TCCTCAGGGTGGGAAAGAATG 59.365 52.381 0.00 0.00 0.00 2.67
3580 4729 1.635487 CCTCAGGGTGGGAAAGAATGA 59.365 52.381 0.00 0.00 0.00 2.57
3581 4730 2.619074 CCTCAGGGTGGGAAAGAATGAC 60.619 54.545 0.00 0.00 0.00 3.06
3582 4731 2.040278 CTCAGGGTGGGAAAGAATGACA 59.960 50.000 0.00 0.00 0.00 3.58
3583 4732 2.445145 TCAGGGTGGGAAAGAATGACAA 59.555 45.455 0.00 0.00 0.00 3.18
3584 4733 3.117322 TCAGGGTGGGAAAGAATGACAAA 60.117 43.478 0.00 0.00 0.00 2.83
3585 4734 3.834231 CAGGGTGGGAAAGAATGACAAAT 59.166 43.478 0.00 0.00 0.00 2.32
3586 4735 5.016173 CAGGGTGGGAAAGAATGACAAATA 58.984 41.667 0.00 0.00 0.00 1.40
3587 4736 5.658190 CAGGGTGGGAAAGAATGACAAATAT 59.342 40.000 0.00 0.00 0.00 1.28
3588 4737 6.155049 CAGGGTGGGAAAGAATGACAAATATT 59.845 38.462 0.00 0.00 0.00 1.28
3589 4738 6.730507 AGGGTGGGAAAGAATGACAAATATTT 59.269 34.615 0.00 0.00 0.00 1.40
3590 4739 7.237471 AGGGTGGGAAAGAATGACAAATATTTT 59.763 33.333 0.00 0.00 0.00 1.82
3591 4740 8.536175 GGGTGGGAAAGAATGACAAATATTTTA 58.464 33.333 0.00 0.00 0.00 1.52
3592 4741 9.936759 GGTGGGAAAGAATGACAAATATTTTAA 57.063 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.777802 ACTAGCCATTGACTCGAGATATTG 58.222 41.667 21.68 12.78 0.00 1.90
1 2 5.772672 AGACTAGCCATTGACTCGAGATATT 59.227 40.000 21.68 0.00 0.00 1.28
2 3 5.321102 AGACTAGCCATTGACTCGAGATAT 58.679 41.667 21.68 6.16 0.00 1.63
3 4 4.720046 AGACTAGCCATTGACTCGAGATA 58.280 43.478 21.68 4.17 0.00 1.98
4 5 3.561143 AGACTAGCCATTGACTCGAGAT 58.439 45.455 21.68 2.93 0.00 2.75
5 6 2.946329 GAGACTAGCCATTGACTCGAGA 59.054 50.000 21.68 0.00 0.00 4.04
6 7 2.034053 GGAGACTAGCCATTGACTCGAG 59.966 54.545 11.84 11.84 0.00 4.04
7 8 2.025155 GGAGACTAGCCATTGACTCGA 58.975 52.381 0.00 0.00 0.00 4.04
8 9 2.028130 AGGAGACTAGCCATTGACTCG 58.972 52.381 0.00 0.00 40.61 4.18
9 10 4.187694 CAAAGGAGACTAGCCATTGACTC 58.812 47.826 0.00 0.00 42.68 3.36
10 11 3.620966 GCAAAGGAGACTAGCCATTGACT 60.621 47.826 6.93 0.00 42.68 3.41
11 12 2.680339 GCAAAGGAGACTAGCCATTGAC 59.320 50.000 6.93 0.00 42.68 3.18
12 13 2.305635 TGCAAAGGAGACTAGCCATTGA 59.694 45.455 6.93 0.00 42.68 2.57
13 14 2.681848 CTGCAAAGGAGACTAGCCATTG 59.318 50.000 0.00 0.00 42.68 2.82
14 15 2.356535 CCTGCAAAGGAGACTAGCCATT 60.357 50.000 0.00 0.00 42.68 3.16
15 16 1.211457 CCTGCAAAGGAGACTAGCCAT 59.789 52.381 0.00 0.00 42.68 4.40
16 17 0.615331 CCTGCAAAGGAGACTAGCCA 59.385 55.000 0.00 0.00 42.68 4.75
17 18 0.905357 TCCTGCAAAGGAGACTAGCC 59.095 55.000 0.00 0.00 42.68 3.93
18 19 2.770164 TTCCTGCAAAGGAGACTAGC 57.230 50.000 0.00 0.00 42.68 3.42
19 20 5.006386 ACATTTTCCTGCAAAGGAGACTAG 58.994 41.667 0.00 0.00 42.68 2.57
20 21 4.761739 CACATTTTCCTGCAAAGGAGACTA 59.238 41.667 0.00 0.00 42.68 2.59
21 22 6.059406 GCACATTTTCCTGCAAAGGAGACT 62.059 45.833 0.00 0.00 39.43 3.24
22 23 3.858503 GCACATTTTCCTGCAAAGGAGAC 60.859 47.826 0.00 0.00 39.43 3.36
23 24 2.297033 GCACATTTTCCTGCAAAGGAGA 59.703 45.455 0.00 0.00 39.43 3.71
24 25 2.298163 AGCACATTTTCCTGCAAAGGAG 59.702 45.455 0.00 0.00 39.43 3.69
25 26 2.318908 AGCACATTTTCCTGCAAAGGA 58.681 42.857 0.00 0.00 35.73 3.36
26 27 2.825861 AGCACATTTTCCTGCAAAGG 57.174 45.000 0.00 0.00 35.73 3.11
27 28 4.022068 TCCTAAGCACATTTTCCTGCAAAG 60.022 41.667 0.00 0.00 35.73 2.77
28 29 3.894427 TCCTAAGCACATTTTCCTGCAAA 59.106 39.130 0.00 0.00 35.73 3.68
29 30 3.495331 TCCTAAGCACATTTTCCTGCAA 58.505 40.909 0.00 0.00 35.73 4.08
30 31 3.153369 TCCTAAGCACATTTTCCTGCA 57.847 42.857 0.00 0.00 35.73 4.41
31 32 3.950395 AGATCCTAAGCACATTTTCCTGC 59.050 43.478 0.00 0.00 0.00 4.85
32 33 5.649395 TCAAGATCCTAAGCACATTTTCCTG 59.351 40.000 0.00 0.00 0.00 3.86
33 34 5.819991 TCAAGATCCTAAGCACATTTTCCT 58.180 37.500 0.00 0.00 0.00 3.36
34 35 5.067023 CCTCAAGATCCTAAGCACATTTTCC 59.933 44.000 0.00 0.00 0.00 3.13
35 36 5.449725 GCCTCAAGATCCTAAGCACATTTTC 60.450 44.000 0.00 0.00 0.00 2.29
36 37 4.400567 GCCTCAAGATCCTAAGCACATTTT 59.599 41.667 0.00 0.00 0.00 1.82
37 38 3.950395 GCCTCAAGATCCTAAGCACATTT 59.050 43.478 0.00 0.00 0.00 2.32
38 39 3.201708 AGCCTCAAGATCCTAAGCACATT 59.798 43.478 0.00 0.00 0.00 2.71
39 40 2.776536 AGCCTCAAGATCCTAAGCACAT 59.223 45.455 0.00 0.00 0.00 3.21
40 41 2.169352 GAGCCTCAAGATCCTAAGCACA 59.831 50.000 0.00 0.00 0.00 4.57
41 42 2.169352 TGAGCCTCAAGATCCTAAGCAC 59.831 50.000 0.00 0.00 0.00 4.40
42 43 2.470990 TGAGCCTCAAGATCCTAAGCA 58.529 47.619 0.00 0.00 0.00 3.91
79 80 8.882415 ATCGTCAAGTTCACTAAAAAGAAGTA 57.118 30.769 0.00 0.00 0.00 2.24
87 88 7.494625 ACTCAAGAAATCGTCAAGTTCACTAAA 59.505 33.333 0.00 0.00 34.40 1.85
88 89 6.984474 ACTCAAGAAATCGTCAAGTTCACTAA 59.016 34.615 0.00 0.00 34.40 2.24
89 90 6.513180 ACTCAAGAAATCGTCAAGTTCACTA 58.487 36.000 0.00 0.00 34.40 2.74
105 106 1.467734 GACTAGCCGACGACTCAAGAA 59.532 52.381 0.00 0.00 0.00 2.52
109 110 0.249676 AGAGACTAGCCGACGACTCA 59.750 55.000 0.00 0.00 0.00 3.41
156 157 4.832266 AGCTCAGTCGATCTCAAGGATAAT 59.168 41.667 0.00 0.00 34.33 1.28
171 172 6.307031 TCTCGATCATTTAGTAGCTCAGTC 57.693 41.667 0.00 0.00 0.00 3.51
172 173 6.072175 GGATCTCGATCATTTAGTAGCTCAGT 60.072 42.308 8.97 0.00 39.54 3.41
173 174 6.150976 AGGATCTCGATCATTTAGTAGCTCAG 59.849 42.308 8.97 0.00 39.54 3.35
174 175 6.007076 AGGATCTCGATCATTTAGTAGCTCA 58.993 40.000 8.97 0.00 39.54 4.26
189 194 4.439253 TCTCCACATCTTAGGATCTCGA 57.561 45.455 0.00 0.00 32.53 4.04
242 248 5.685954 GCAGCATAAATGTGTCTCAATCATG 59.314 40.000 0.00 0.00 0.00 3.07
244 250 4.701171 TGCAGCATAAATGTGTCTCAATCA 59.299 37.500 0.00 0.00 0.00 2.57
251 257 5.496133 AGAATCTGCAGCATAAATGTGTC 57.504 39.130 9.47 0.00 0.00 3.67
302 308 4.119442 TGATTGACTTCTTACGGTAGGC 57.881 45.455 0.00 0.00 0.00 3.93
396 405 2.157738 GGTTCAGAGCATTTGAGCACT 58.842 47.619 0.00 0.00 35.80 4.40
412 421 6.307155 CACATTTCGACTTGTTATGAGGTTC 58.693 40.000 0.00 0.00 0.00 3.62
421 430 2.158667 AGACCCCACATTTCGACTTGTT 60.159 45.455 0.00 0.00 0.00 2.83
443 452 7.442364 GGATCATTAGACATGGAAATCTTCGAA 59.558 37.037 0.00 0.00 0.00 3.71
457 466 5.822519 GCAATGTACCAAGGATCATTAGACA 59.177 40.000 0.00 0.00 0.00 3.41
470 479 5.492855 ACCTACTGTTAGCAATGTACCAA 57.507 39.130 0.00 0.00 0.00 3.67
494 503 7.412129 CGAATCATGAAAATGATGTGTTTTGGG 60.412 37.037 0.00 0.00 40.81 4.12
507 516 3.968265 ACAGGGTCCGAATCATGAAAAT 58.032 40.909 0.00 0.00 0.00 1.82
530 539 9.671279 TGTATTATCATGAAAACTGTGAGATGT 57.329 29.630 0.00 0.00 0.00 3.06
545 557 4.990543 AACGGATGCGTGTATTATCATG 57.009 40.909 14.66 0.00 0.00 3.07
549 810 4.952460 ACCTAAACGGATGCGTGTATTAT 58.048 39.130 14.66 0.00 36.31 1.28
557 818 0.457166 TGACGACCTAAACGGATGCG 60.457 55.000 4.58 4.58 36.31 4.73
558 819 0.997196 GTGACGACCTAAACGGATGC 59.003 55.000 0.00 0.00 36.31 3.91
562 823 0.780002 CAACGTGACGACCTAAACGG 59.220 55.000 13.70 0.00 40.25 4.44
564 825 2.138596 TCCAACGTGACGACCTAAAC 57.861 50.000 13.70 0.00 0.00 2.01
567 828 2.679450 CAATTCCAACGTGACGACCTA 58.321 47.619 13.70 0.00 0.00 3.08
568 829 1.508632 CAATTCCAACGTGACGACCT 58.491 50.000 13.70 0.00 0.00 3.85
569 830 0.110373 GCAATTCCAACGTGACGACC 60.110 55.000 13.70 0.00 0.00 4.79
570 831 0.110373 GGCAATTCCAACGTGACGAC 60.110 55.000 13.70 0.00 34.01 4.34
571 832 1.231958 GGGCAATTCCAACGTGACGA 61.232 55.000 13.70 0.00 36.21 4.20
572 833 1.209127 GGGCAATTCCAACGTGACG 59.791 57.895 2.24 2.24 36.21 4.35
573 834 1.467342 GTAGGGCAATTCCAACGTGAC 59.533 52.381 0.00 0.00 36.21 3.67
574 835 1.349688 AGTAGGGCAATTCCAACGTGA 59.650 47.619 0.00 0.00 36.21 4.35
575 836 1.737793 GAGTAGGGCAATTCCAACGTG 59.262 52.381 0.00 0.00 36.21 4.49
576 837 1.339727 GGAGTAGGGCAATTCCAACGT 60.340 52.381 0.00 0.00 36.21 3.99
578 839 2.808906 AGGAGTAGGGCAATTCCAAC 57.191 50.000 3.96 0.00 36.21 3.77
579 840 3.430453 CAAAGGAGTAGGGCAATTCCAA 58.570 45.455 3.96 0.00 36.21 3.53
580 841 2.883888 GCAAAGGAGTAGGGCAATTCCA 60.884 50.000 3.96 0.00 36.21 3.53
581 842 1.751351 GCAAAGGAGTAGGGCAATTCC 59.249 52.381 0.00 0.00 0.00 3.01
582 843 2.424956 CTGCAAAGGAGTAGGGCAATTC 59.575 50.000 0.00 0.00 33.58 2.17
585 846 0.771127 ACTGCAAAGGAGTAGGGCAA 59.229 50.000 0.00 0.00 33.58 4.52
586 847 0.771127 AACTGCAAAGGAGTAGGGCA 59.229 50.000 0.00 0.00 0.00 5.36
587 848 2.781681 TAACTGCAAAGGAGTAGGGC 57.218 50.000 0.00 0.00 0.00 5.19
588 849 4.192317 GACATAACTGCAAAGGAGTAGGG 58.808 47.826 0.00 0.00 0.00 3.53
589 850 4.832248 TGACATAACTGCAAAGGAGTAGG 58.168 43.478 0.00 0.00 0.00 3.18
590 851 5.295292 CCATGACATAACTGCAAAGGAGTAG 59.705 44.000 0.00 0.00 0.00 2.57
591 852 5.185454 CCATGACATAACTGCAAAGGAGTA 58.815 41.667 0.00 0.00 0.00 2.59
592 853 4.012374 CCATGACATAACTGCAAAGGAGT 58.988 43.478 0.00 0.00 0.00 3.85
657 1521 6.567891 GCCCGCTCCAATTAACTATGTTATTC 60.568 42.308 0.00 0.00 0.00 1.75
668 1532 0.472471 CTAGGGCCCGCTCCAATTAA 59.528 55.000 18.44 0.00 0.00 1.40
752 1625 1.534729 GAATTTTGACTGGGCGGAGT 58.465 50.000 0.00 0.00 0.00 3.85
756 1629 0.897863 TGGGGAATTTTGACTGGGCG 60.898 55.000 0.00 0.00 0.00 6.13
855 1744 3.090532 AGACGGGGATGGAAGGGC 61.091 66.667 0.00 0.00 0.00 5.19
980 1884 2.200092 GCCGATCCCTCCTCTCCT 59.800 66.667 0.00 0.00 0.00 3.69
981 1885 2.920384 GGCCGATCCCTCCTCTCC 60.920 72.222 0.00 0.00 0.00 3.71
982 1886 3.299190 CGGCCGATCCCTCCTCTC 61.299 72.222 24.07 0.00 0.00 3.20
1551 2455 1.082756 CCAAAGCGCGTGTTGAGTC 60.083 57.895 20.81 0.00 0.00 3.36
1555 2459 2.051345 GGACCAAAGCGCGTGTTG 60.051 61.111 8.43 12.32 0.00 3.33
1640 2544 4.926238 GGATTCAGTATGGTCTAGCAATCG 59.074 45.833 0.00 0.00 36.16 3.34
1645 2549 2.303311 GGGGGATTCAGTATGGTCTAGC 59.697 54.545 0.00 0.00 36.16 3.42
1667 2573 8.060090 GCAACATGAAGAAACTGAAGAAAAATG 58.940 33.333 0.00 0.00 0.00 2.32
1674 2580 6.369005 CAGTAGCAACATGAAGAAACTGAAG 58.631 40.000 0.00 0.00 36.13 3.02
1711 2629 9.672673 AGAGCACACAGTAAATAAAACTATGAT 57.327 29.630 0.00 0.00 0.00 2.45
1712 2630 8.935844 CAGAGCACACAGTAAATAAAACTATGA 58.064 33.333 0.00 0.00 0.00 2.15
1713 2631 8.721478 ACAGAGCACACAGTAAATAAAACTATG 58.279 33.333 0.00 0.00 0.00 2.23
1715 2633 8.671384 AACAGAGCACACAGTAAATAAAACTA 57.329 30.769 0.00 0.00 0.00 2.24
1746 2670 1.961277 AGCAGCAGCCGTGTTACAC 60.961 57.895 5.27 5.27 43.56 2.90
1779 2712 5.048921 ACAGAGCACATCAATTCTTCTTGTG 60.049 40.000 0.00 0.00 40.42 3.33
1780 2713 5.048921 CACAGAGCACATCAATTCTTCTTGT 60.049 40.000 0.00 0.00 0.00 3.16
1781 2714 5.391449 CACAGAGCACATCAATTCTTCTTG 58.609 41.667 0.00 0.00 0.00 3.02
1804 2740 5.163754 ACACACAAACAGAGTAAAACAGAGC 60.164 40.000 0.00 0.00 0.00 4.09
1816 2752 3.427368 GCACAATGACACACACAAACAGA 60.427 43.478 0.00 0.00 0.00 3.41
1817 2753 2.853594 GCACAATGACACACACAAACAG 59.146 45.455 0.00 0.00 0.00 3.16
1818 2754 2.229784 TGCACAATGACACACACAAACA 59.770 40.909 0.00 0.00 0.00 2.83
1819 2755 2.873609 TGCACAATGACACACACAAAC 58.126 42.857 0.00 0.00 0.00 2.93
1820 2756 3.119209 ACATGCACAATGACACACACAAA 60.119 39.130 0.00 0.00 38.72 2.83
1821 2757 2.426381 ACATGCACAATGACACACACAA 59.574 40.909 0.00 0.00 38.72 3.33
1822 2758 2.022934 ACATGCACAATGACACACACA 58.977 42.857 0.00 0.00 38.72 3.72
1838 2794 1.355971 CGACCAAGGAACGGTACATG 58.644 55.000 0.00 0.00 36.69 3.21
1843 2799 2.406002 ATTGCCGACCAAGGAACGGT 62.406 55.000 21.92 7.76 46.95 4.83
1984 2942 3.081061 TGGATACAGGTTCATGTTGCAC 58.919 45.455 0.00 0.00 46.17 4.57
1999 2957 6.292919 GGCACTGAAACGAAGAATATGGATAC 60.293 42.308 0.00 0.00 0.00 2.24
2000 2958 5.758296 GGCACTGAAACGAAGAATATGGATA 59.242 40.000 0.00 0.00 0.00 2.59
2007 2965 2.270352 TGGGCACTGAAACGAAGAAT 57.730 45.000 0.00 0.00 0.00 2.40
2014 2972 2.479566 TCAGAGATGGGCACTGAAAC 57.520 50.000 0.00 0.00 40.55 2.78
2023 2981 5.711976 ACTTACAAAACCAATCAGAGATGGG 59.288 40.000 9.33 0.00 41.17 4.00
2024 2982 6.824305 ACTTACAAAACCAATCAGAGATGG 57.176 37.500 3.88 3.88 42.60 3.51
2030 2988 9.003658 AGATTGAGTACTTACAAAACCAATCAG 57.996 33.333 21.88 0.00 40.34 2.90
2033 2991 7.309194 GCCAGATTGAGTACTTACAAAACCAAT 60.309 37.037 0.00 0.00 0.00 3.16
2036 2994 5.472137 TGCCAGATTGAGTACTTACAAAACC 59.528 40.000 0.00 0.00 0.00 3.27
2038 2996 7.759489 ATTGCCAGATTGAGTACTTACAAAA 57.241 32.000 0.00 0.00 0.00 2.44
2046 3004 4.702131 AGGAACAATTGCCAGATTGAGTAC 59.298 41.667 5.05 0.00 38.93 2.73
2070 3032 3.149196 CAAAGGCAGACACCTAACACAT 58.851 45.455 0.00 0.00 39.93 3.21
2093 3059 3.898741 CCTCCTTATACCTCTGGTCCTTC 59.101 52.174 0.00 0.00 37.09 3.46
2143 3109 3.015327 GCACAAAGAGAGAGGCATTGAT 58.985 45.455 0.00 0.00 0.00 2.57
2146 3112 2.039480 TGAGCACAAAGAGAGAGGCATT 59.961 45.455 0.00 0.00 0.00 3.56
2168 3134 3.815962 AGAGCAGAGCATATGAAGCAATG 59.184 43.478 6.97 0.00 0.00 2.82
2177 3143 1.270412 GCAGAGCAGAGCAGAGCATAT 60.270 52.381 0.00 0.00 0.00 1.78
2178 3144 0.104487 GCAGAGCAGAGCAGAGCATA 59.896 55.000 0.00 0.00 0.00 3.14
2179 3145 1.153329 GCAGAGCAGAGCAGAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
2180 3146 1.828461 AAGCAGAGCAGAGCAGAGCA 61.828 55.000 0.00 0.00 0.00 4.26
2181 3147 0.674269 AAAGCAGAGCAGAGCAGAGC 60.674 55.000 0.00 0.00 0.00 4.09
2183 3149 0.954449 GCAAAGCAGAGCAGAGCAGA 60.954 55.000 0.00 0.00 0.00 4.26
2184 3150 0.956410 AGCAAAGCAGAGCAGAGCAG 60.956 55.000 0.00 0.00 0.00 4.24
2186 3152 0.168568 GAAGCAAAGCAGAGCAGAGC 59.831 55.000 0.00 0.00 0.00 4.09
2187 3153 0.803740 GGAAGCAAAGCAGAGCAGAG 59.196 55.000 0.00 0.00 0.00 3.35
2188 3154 0.952497 CGGAAGCAAAGCAGAGCAGA 60.952 55.000 0.00 0.00 0.00 4.26
2191 3176 1.028868 ATCCGGAAGCAAAGCAGAGC 61.029 55.000 9.01 0.00 0.00 4.09
2313 3338 8.023021 AGCATAAAACTATGATGGAGTCAGTA 57.977 34.615 0.00 0.00 40.92 2.74
2319 3344 6.773638 AGGGTAGCATAAAACTATGATGGAG 58.226 40.000 0.00 0.00 0.00 3.86
2320 3345 6.763715 AGGGTAGCATAAAACTATGATGGA 57.236 37.500 0.00 0.00 0.00 3.41
2417 3525 4.614555 TGCTGACTTGTGTTGTAGTTTG 57.385 40.909 0.00 0.00 0.00 2.93
2428 3536 3.678289 TCAGTGCATATTGCTGACTTGT 58.322 40.909 0.10 0.00 45.31 3.16
2552 3677 2.767536 GCTGGAACTTATGCGAGCA 58.232 52.632 0.00 0.00 0.00 4.26
2687 3826 2.100216 GCTACATGGTTTGCGCCG 59.900 61.111 4.18 0.00 0.00 6.46
2757 3901 5.916661 ACGACAACTAGTCTGGTTCATAT 57.083 39.130 0.00 0.00 45.32 1.78
2799 3943 3.926616 AGACTTTATTCTGGTGGACACG 58.073 45.455 0.00 0.00 0.00 4.49
2890 4039 6.914215 GCATAACACCAACAACAGATGATATG 59.086 38.462 0.00 0.00 0.00 1.78
2923 4072 1.710244 ACCAATGGTCACCTGATGGAA 59.290 47.619 17.06 0.00 37.04 3.53
2934 4083 1.446907 CTCACTGCTCACCAATGGTC 58.553 55.000 0.00 0.00 31.02 4.02
2936 4085 0.607217 TGCTCACTGCTCACCAATGG 60.607 55.000 0.00 0.00 43.37 3.16
2953 4102 2.161609 CAGACCGGGTAAAAAGATGTGC 59.838 50.000 6.32 0.00 0.00 4.57
2967 4116 1.613437 ACCAAATTTGCTTCAGACCGG 59.387 47.619 12.92 0.00 0.00 5.28
2969 4118 2.351738 CCGACCAAATTTGCTTCAGACC 60.352 50.000 12.92 0.00 0.00 3.85
2976 4125 8.840833 ATTTAAATAAACCGACCAAATTTGCT 57.159 26.923 12.92 0.00 0.00 3.91
2980 4129 7.880713 AGCCAATTTAAATAAACCGACCAAATT 59.119 29.630 0.01 0.00 0.00 1.82
2981 4130 7.390823 AGCCAATTTAAATAAACCGACCAAAT 58.609 30.769 0.01 0.00 0.00 2.32
3204 4353 5.714806 CACTTGTAAACCCCACCTGAATATT 59.285 40.000 0.00 0.00 0.00 1.28
3205 4354 5.014755 TCACTTGTAAACCCCACCTGAATAT 59.985 40.000 0.00 0.00 0.00 1.28
3206 4355 4.351407 TCACTTGTAAACCCCACCTGAATA 59.649 41.667 0.00 0.00 0.00 1.75
3207 4356 3.139397 TCACTTGTAAACCCCACCTGAAT 59.861 43.478 0.00 0.00 0.00 2.57
3208 4357 2.510382 TCACTTGTAAACCCCACCTGAA 59.490 45.455 0.00 0.00 0.00 3.02
3209 4358 2.105821 CTCACTTGTAAACCCCACCTGA 59.894 50.000 0.00 0.00 0.00 3.86
3210 4359 2.158667 ACTCACTTGTAAACCCCACCTG 60.159 50.000 0.00 0.00 0.00 4.00
3211 4360 2.132686 ACTCACTTGTAAACCCCACCT 58.867 47.619 0.00 0.00 0.00 4.00
3212 4361 2.651382 ACTCACTTGTAAACCCCACC 57.349 50.000 0.00 0.00 0.00 4.61
3213 4362 7.748691 TTAATAACTCACTTGTAAACCCCAC 57.251 36.000 0.00 0.00 0.00 4.61
3214 4363 8.000127 AGTTTAATAACTCACTTGTAAACCCCA 59.000 33.333 0.00 0.00 40.60 4.96
3215 4364 8.400184 AGTTTAATAACTCACTTGTAAACCCC 57.600 34.615 0.00 0.00 40.60 4.95
3216 4365 9.673454 CAAGTTTAATAACTCACTTGTAAACCC 57.327 33.333 7.53 0.00 43.74 4.11
3250 4399 9.196139 ACTTCATCCCGGATTTATTTTATCAAA 57.804 29.630 0.73 0.00 0.00 2.69
3251 4400 8.760980 ACTTCATCCCGGATTTATTTTATCAA 57.239 30.769 0.73 0.00 0.00 2.57
3252 4401 7.996066 TGACTTCATCCCGGATTTATTTTATCA 59.004 33.333 0.73 0.00 0.00 2.15
3253 4402 8.391075 TGACTTCATCCCGGATTTATTTTATC 57.609 34.615 0.73 0.00 0.00 1.75
3254 4403 8.940397 ATGACTTCATCCCGGATTTATTTTAT 57.060 30.769 0.73 0.00 28.78 1.40
3255 4404 8.629158 CAATGACTTCATCCCGGATTTATTTTA 58.371 33.333 0.73 0.00 35.10 1.52
3256 4405 7.341769 TCAATGACTTCATCCCGGATTTATTTT 59.658 33.333 0.73 0.00 35.10 1.82
3257 4406 6.833416 TCAATGACTTCATCCCGGATTTATTT 59.167 34.615 0.73 0.00 35.10 1.40
3258 4407 6.364701 TCAATGACTTCATCCCGGATTTATT 58.635 36.000 0.73 0.00 35.10 1.40
3259 4408 5.940617 TCAATGACTTCATCCCGGATTTAT 58.059 37.500 0.73 0.00 35.10 1.40
3260 4409 5.366482 TCAATGACTTCATCCCGGATTTA 57.634 39.130 0.73 0.00 35.10 1.40
3261 4410 4.235079 TCAATGACTTCATCCCGGATTT 57.765 40.909 0.73 0.00 35.10 2.17
3262 4411 3.931907 TCAATGACTTCATCCCGGATT 57.068 42.857 0.73 0.00 35.10 3.01
3263 4412 3.545703 GTTCAATGACTTCATCCCGGAT 58.454 45.455 0.73 0.00 35.10 4.18
3264 4413 2.676750 CGTTCAATGACTTCATCCCGGA 60.677 50.000 0.73 0.00 35.10 5.14
3265 4414 1.665679 CGTTCAATGACTTCATCCCGG 59.334 52.381 0.00 0.00 35.10 5.73
3266 4415 1.665679 CCGTTCAATGACTTCATCCCG 59.334 52.381 0.00 0.00 35.10 5.14
3267 4416 2.985896 TCCGTTCAATGACTTCATCCC 58.014 47.619 0.00 0.00 35.10 3.85
3268 4417 5.371115 TTTTCCGTTCAATGACTTCATCC 57.629 39.130 0.00 0.00 35.10 3.51
3269 4418 6.381801 ACATTTTCCGTTCAATGACTTCATC 58.618 36.000 5.07 0.00 35.10 2.92
3270 4419 6.331369 ACATTTTCCGTTCAATGACTTCAT 57.669 33.333 5.07 0.00 38.41 2.57
3271 4420 5.559991 CGACATTTTCCGTTCAATGACTTCA 60.560 40.000 5.07 0.00 34.89 3.02
3272 4421 4.846137 CGACATTTTCCGTTCAATGACTTC 59.154 41.667 5.07 0.00 34.89 3.01
3273 4422 4.274950 ACGACATTTTCCGTTCAATGACTT 59.725 37.500 0.00 0.00 35.21 3.01
3274 4423 3.813166 ACGACATTTTCCGTTCAATGACT 59.187 39.130 0.00 0.00 35.21 3.41
3275 4424 4.141855 ACGACATTTTCCGTTCAATGAC 57.858 40.909 0.00 0.00 35.21 3.06
3276 4425 3.810386 TGACGACATTTTCCGTTCAATGA 59.190 39.130 0.00 0.00 39.30 2.57
3277 4426 3.906008 GTGACGACATTTTCCGTTCAATG 59.094 43.478 0.00 0.00 39.30 2.82
3278 4427 3.363575 CGTGACGACATTTTCCGTTCAAT 60.364 43.478 0.00 0.00 39.30 2.57
3279 4428 2.033577 CGTGACGACATTTTCCGTTCAA 60.034 45.455 0.00 0.00 39.30 2.69
3280 4429 1.523515 CGTGACGACATTTTCCGTTCA 59.476 47.619 0.00 0.00 39.30 3.18
3281 4430 1.136446 CCGTGACGACATTTTCCGTTC 60.136 52.381 6.54 0.00 39.30 3.95
3282 4431 0.863144 CCGTGACGACATTTTCCGTT 59.137 50.000 6.54 0.00 39.30 4.44
3283 4432 1.562575 GCCGTGACGACATTTTCCGT 61.563 55.000 6.54 0.00 42.17 4.69
3284 4433 1.131826 GCCGTGACGACATTTTCCG 59.868 57.895 6.54 0.00 0.00 4.30
3285 4434 0.802494 ATGCCGTGACGACATTTTCC 59.198 50.000 6.54 0.00 0.00 3.13
3286 4435 1.463056 TCATGCCGTGACGACATTTTC 59.537 47.619 6.54 0.00 25.39 2.29
3287 4436 1.196808 GTCATGCCGTGACGACATTTT 59.803 47.619 6.54 0.00 46.99 1.82
3288 4437 0.796312 GTCATGCCGTGACGACATTT 59.204 50.000 6.54 0.00 46.99 2.32
3289 4438 2.456000 GTCATGCCGTGACGACATT 58.544 52.632 6.54 0.00 46.99 2.71
3290 4439 4.185413 GTCATGCCGTGACGACAT 57.815 55.556 6.54 2.90 46.99 3.06
3296 4445 2.696989 AGATCATTGTCATGCCGTGA 57.303 45.000 0.00 0.00 0.00 4.35
3297 4446 2.804527 CCTAGATCATTGTCATGCCGTG 59.195 50.000 0.00 0.00 0.00 4.94
3298 4447 2.700371 TCCTAGATCATTGTCATGCCGT 59.300 45.455 0.00 0.00 0.00 5.68
3299 4448 3.391506 TCCTAGATCATTGTCATGCCG 57.608 47.619 0.00 0.00 0.00 5.69
3300 4449 6.645790 ATTTTCCTAGATCATTGTCATGCC 57.354 37.500 0.00 0.00 0.00 4.40
3301 4450 6.420008 GCAATTTTCCTAGATCATTGTCATGC 59.580 38.462 0.00 0.00 0.00 4.06
3302 4451 6.635641 CGCAATTTTCCTAGATCATTGTCATG 59.364 38.462 0.00 0.00 0.00 3.07
3303 4452 6.319658 ACGCAATTTTCCTAGATCATTGTCAT 59.680 34.615 0.00 0.00 0.00 3.06
3304 4453 5.647658 ACGCAATTTTCCTAGATCATTGTCA 59.352 36.000 0.00 0.00 0.00 3.58
3305 4454 6.124088 ACGCAATTTTCCTAGATCATTGTC 57.876 37.500 0.00 0.00 0.00 3.18
3306 4455 7.552687 TCTTACGCAATTTTCCTAGATCATTGT 59.447 33.333 0.00 0.00 0.00 2.71
3307 4456 7.919690 TCTTACGCAATTTTCCTAGATCATTG 58.080 34.615 0.00 0.00 0.00 2.82
3308 4457 8.506168 TTCTTACGCAATTTTCCTAGATCATT 57.494 30.769 0.00 0.00 0.00 2.57
3309 4458 8.506168 TTTCTTACGCAATTTTCCTAGATCAT 57.494 30.769 0.00 0.00 0.00 2.45
3310 4459 7.915293 TTTCTTACGCAATTTTCCTAGATCA 57.085 32.000 0.00 0.00 0.00 2.92
3311 4460 8.398665 ACATTTCTTACGCAATTTTCCTAGATC 58.601 33.333 0.00 0.00 0.00 2.75
3312 4461 8.184192 CACATTTCTTACGCAATTTTCCTAGAT 58.816 33.333 0.00 0.00 0.00 1.98
3313 4462 7.389330 TCACATTTCTTACGCAATTTTCCTAGA 59.611 33.333 0.00 0.00 0.00 2.43
3314 4463 7.526608 TCACATTTCTTACGCAATTTTCCTAG 58.473 34.615 0.00 0.00 0.00 3.02
3315 4464 7.441890 TCACATTTCTTACGCAATTTTCCTA 57.558 32.000 0.00 0.00 0.00 2.94
3316 4465 6.325919 TCACATTTCTTACGCAATTTTCCT 57.674 33.333 0.00 0.00 0.00 3.36
3317 4466 7.381139 TCTTTCACATTTCTTACGCAATTTTCC 59.619 33.333 0.00 0.00 0.00 3.13
3318 4467 8.280909 TCTTTCACATTTCTTACGCAATTTTC 57.719 30.769 0.00 0.00 0.00 2.29
3319 4468 8.641499 TTCTTTCACATTTCTTACGCAATTTT 57.359 26.923 0.00 0.00 0.00 1.82
3320 4469 8.539674 GTTTCTTTCACATTTCTTACGCAATTT 58.460 29.630 0.00 0.00 0.00 1.82
3321 4470 7.169140 GGTTTCTTTCACATTTCTTACGCAATT 59.831 33.333 0.00 0.00 0.00 2.32
3322 4471 6.640907 GGTTTCTTTCACATTTCTTACGCAAT 59.359 34.615 0.00 0.00 0.00 3.56
3323 4472 5.974751 GGTTTCTTTCACATTTCTTACGCAA 59.025 36.000 0.00 0.00 0.00 4.85
3324 4473 5.298276 AGGTTTCTTTCACATTTCTTACGCA 59.702 36.000 0.00 0.00 0.00 5.24
3325 4474 5.758924 AGGTTTCTTTCACATTTCTTACGC 58.241 37.500 0.00 0.00 0.00 4.42
3326 4475 7.193595 ACAAGGTTTCTTTCACATTTCTTACG 58.806 34.615 0.00 0.00 0.00 3.18
3330 4479 9.533253 CAATTACAAGGTTTCTTTCACATTTCT 57.467 29.630 0.00 0.00 0.00 2.52
3331 4480 8.275632 GCAATTACAAGGTTTCTTTCACATTTC 58.724 33.333 0.00 0.00 0.00 2.17
3332 4481 7.768120 TGCAATTACAAGGTTTCTTTCACATTT 59.232 29.630 0.00 0.00 0.00 2.32
3333 4482 7.271511 TGCAATTACAAGGTTTCTTTCACATT 58.728 30.769 0.00 0.00 0.00 2.71
3334 4483 6.815089 TGCAATTACAAGGTTTCTTTCACAT 58.185 32.000 0.00 0.00 0.00 3.21
3335 4484 6.214191 TGCAATTACAAGGTTTCTTTCACA 57.786 33.333 0.00 0.00 0.00 3.58
3336 4485 6.922957 TGATGCAATTACAAGGTTTCTTTCAC 59.077 34.615 0.00 0.00 0.00 3.18
3337 4486 7.048629 TGATGCAATTACAAGGTTTCTTTCA 57.951 32.000 0.00 0.00 0.00 2.69
3338 4487 7.599998 ACATGATGCAATTACAAGGTTTCTTTC 59.400 33.333 0.00 0.00 0.00 2.62
3339 4488 7.444299 ACATGATGCAATTACAAGGTTTCTTT 58.556 30.769 0.00 0.00 0.00 2.52
3340 4489 6.996509 ACATGATGCAATTACAAGGTTTCTT 58.003 32.000 0.00 0.00 0.00 2.52
3341 4490 6.594788 ACATGATGCAATTACAAGGTTTCT 57.405 33.333 0.00 0.00 0.00 2.52
3342 4491 6.867816 TGAACATGATGCAATTACAAGGTTTC 59.132 34.615 0.00 0.00 0.00 2.78
3343 4492 6.757237 TGAACATGATGCAATTACAAGGTTT 58.243 32.000 0.00 0.00 0.00 3.27
3344 4493 6.209192 TCTGAACATGATGCAATTACAAGGTT 59.791 34.615 0.00 0.00 0.00 3.50
3345 4494 5.711506 TCTGAACATGATGCAATTACAAGGT 59.288 36.000 0.00 0.00 0.00 3.50
3346 4495 6.198650 TCTGAACATGATGCAATTACAAGG 57.801 37.500 0.00 0.00 0.00 3.61
3347 4496 6.750501 CCTTCTGAACATGATGCAATTACAAG 59.249 38.462 0.00 0.00 0.00 3.16
3348 4497 6.433716 TCCTTCTGAACATGATGCAATTACAA 59.566 34.615 0.00 0.00 0.00 2.41
3349 4498 5.945191 TCCTTCTGAACATGATGCAATTACA 59.055 36.000 0.00 0.00 0.00 2.41
3350 4499 6.127925 TGTCCTTCTGAACATGATGCAATTAC 60.128 38.462 0.00 0.00 0.00 1.89
3351 4500 5.945191 TGTCCTTCTGAACATGATGCAATTA 59.055 36.000 0.00 0.00 0.00 1.40
3352 4501 4.768448 TGTCCTTCTGAACATGATGCAATT 59.232 37.500 0.00 0.00 0.00 2.32
3353 4502 4.338012 TGTCCTTCTGAACATGATGCAAT 58.662 39.130 0.00 0.00 0.00 3.56
3354 4503 3.753815 TGTCCTTCTGAACATGATGCAA 58.246 40.909 0.00 0.00 0.00 4.08
3355 4504 3.421919 TGTCCTTCTGAACATGATGCA 57.578 42.857 0.00 0.00 0.00 3.96
3356 4505 5.761726 TCATATGTCCTTCTGAACATGATGC 59.238 40.000 0.00 0.00 0.00 3.91
3357 4506 7.981102 ATCATATGTCCTTCTGAACATGATG 57.019 36.000 0.00 0.00 32.24 3.07
3358 4507 7.664731 GGAATCATATGTCCTTCTGAACATGAT 59.335 37.037 0.00 0.00 34.28 2.45
3359 4508 6.994496 GGAATCATATGTCCTTCTGAACATGA 59.006 38.462 0.00 0.00 0.00 3.07
3360 4509 6.206243 GGGAATCATATGTCCTTCTGAACATG 59.794 42.308 11.14 0.00 34.10 3.21
3361 4510 6.102321 AGGGAATCATATGTCCTTCTGAACAT 59.898 38.462 11.14 0.00 34.10 2.71
3362 4511 5.429762 AGGGAATCATATGTCCTTCTGAACA 59.570 40.000 11.14 0.00 34.10 3.18
3363 4512 5.762218 CAGGGAATCATATGTCCTTCTGAAC 59.238 44.000 11.14 0.00 34.10 3.18
3364 4513 5.688500 GCAGGGAATCATATGTCCTTCTGAA 60.689 44.000 16.37 0.00 34.10 3.02
3365 4514 4.202398 GCAGGGAATCATATGTCCTTCTGA 60.202 45.833 16.37 0.00 34.10 3.27
3366 4515 4.070716 GCAGGGAATCATATGTCCTTCTG 58.929 47.826 11.14 11.24 34.10 3.02
3367 4516 3.718434 TGCAGGGAATCATATGTCCTTCT 59.282 43.478 11.14 0.41 34.10 2.85
3368 4517 3.817647 GTGCAGGGAATCATATGTCCTTC 59.182 47.826 11.14 8.79 34.10 3.46
3369 4518 3.202818 TGTGCAGGGAATCATATGTCCTT 59.797 43.478 11.14 2.40 34.10 3.36
3370 4519 2.779430 TGTGCAGGGAATCATATGTCCT 59.221 45.455 11.14 7.72 34.10 3.85
3371 4520 2.880890 GTGTGCAGGGAATCATATGTCC 59.119 50.000 1.90 3.18 0.00 4.02
3372 4521 3.544684 TGTGTGCAGGGAATCATATGTC 58.455 45.455 1.90 0.00 0.00 3.06
3373 4522 3.650281 TGTGTGCAGGGAATCATATGT 57.350 42.857 1.90 0.00 0.00 2.29
3374 4523 4.499037 CATGTGTGCAGGGAATCATATG 57.501 45.455 0.00 0.00 0.00 1.78
3384 4533 0.673333 TTACGAGCCATGTGTGCAGG 60.673 55.000 0.00 0.00 0.00 4.85
3385 4534 0.443869 GTTACGAGCCATGTGTGCAG 59.556 55.000 0.00 0.00 0.00 4.41
3386 4535 0.034756 AGTTACGAGCCATGTGTGCA 59.965 50.000 0.00 0.00 0.00 4.57
3387 4536 1.156736 AAGTTACGAGCCATGTGTGC 58.843 50.000 0.00 0.00 0.00 4.57
3388 4537 3.896648 AAAAGTTACGAGCCATGTGTG 57.103 42.857 0.00 0.00 0.00 3.82
3406 4555 9.950680 CTATTAAGTGTGCTTCTCAAAGAAAAA 57.049 29.630 0.00 0.00 33.19 1.94
3407 4556 9.120538 ACTATTAAGTGTGCTTCTCAAAGAAAA 57.879 29.630 0.00 0.00 31.78 2.29
3408 4557 8.677148 ACTATTAAGTGTGCTTCTCAAAGAAA 57.323 30.769 0.00 0.00 31.78 2.52
3409 4558 7.387948 GGACTATTAAGTGTGCTTCTCAAAGAA 59.612 37.037 0.00 0.00 35.56 2.52
3410 4559 6.874134 GGACTATTAAGTGTGCTTCTCAAAGA 59.126 38.462 0.00 0.00 35.56 2.52
3411 4560 6.183360 CGGACTATTAAGTGTGCTTCTCAAAG 60.183 42.308 0.00 0.00 35.56 2.77
3412 4561 5.637810 CGGACTATTAAGTGTGCTTCTCAAA 59.362 40.000 0.00 0.00 35.56 2.69
3413 4562 5.047590 TCGGACTATTAAGTGTGCTTCTCAA 60.048 40.000 0.00 0.00 35.56 3.02
3414 4563 4.461431 TCGGACTATTAAGTGTGCTTCTCA 59.539 41.667 0.00 0.00 35.56 3.27
3415 4564 4.995124 TCGGACTATTAAGTGTGCTTCTC 58.005 43.478 0.00 0.00 35.56 2.87
3416 4565 4.463186 ACTCGGACTATTAAGTGTGCTTCT 59.537 41.667 0.00 0.00 35.56 2.85
3417 4566 4.745649 ACTCGGACTATTAAGTGTGCTTC 58.254 43.478 0.00 0.00 35.56 3.86
3418 4567 4.803098 ACTCGGACTATTAAGTGTGCTT 57.197 40.909 0.00 0.00 35.56 3.91
3419 4568 4.803098 AACTCGGACTATTAAGTGTGCT 57.197 40.909 0.00 0.00 35.56 4.40
3420 4569 5.648572 AGTAACTCGGACTATTAAGTGTGC 58.351 41.667 0.00 0.00 35.56 4.57
3421 4570 6.746364 GTGAGTAACTCGGACTATTAAGTGTG 59.254 42.308 0.00 0.00 32.19 3.82
3422 4571 6.432162 TGTGAGTAACTCGGACTATTAAGTGT 59.568 38.462 0.00 0.00 32.19 3.55
3423 4572 6.849502 TGTGAGTAACTCGGACTATTAAGTG 58.150 40.000 0.00 0.00 32.19 3.16
3424 4573 7.642082 ATGTGAGTAACTCGGACTATTAAGT 57.358 36.000 0.00 0.00 33.85 2.24
3425 4574 8.928270 AAATGTGAGTAACTCGGACTATTAAG 57.072 34.615 0.00 0.00 32.35 1.85
3426 4575 8.525316 TGAAATGTGAGTAACTCGGACTATTAA 58.475 33.333 0.00 0.00 32.35 1.40
3427 4576 8.058667 TGAAATGTGAGTAACTCGGACTATTA 57.941 34.615 0.00 0.00 32.35 0.98
3428 4577 6.931838 TGAAATGTGAGTAACTCGGACTATT 58.068 36.000 0.00 0.00 32.35 1.73
3429 4578 6.377429 TCTGAAATGTGAGTAACTCGGACTAT 59.623 38.462 0.00 0.00 32.35 2.12
3430 4579 5.708697 TCTGAAATGTGAGTAACTCGGACTA 59.291 40.000 0.00 0.00 32.35 2.59
3431 4580 4.523173 TCTGAAATGTGAGTAACTCGGACT 59.477 41.667 0.00 0.00 32.35 3.85
3432 4581 4.806330 TCTGAAATGTGAGTAACTCGGAC 58.194 43.478 0.00 0.00 32.35 4.79
3433 4582 5.462530 TTCTGAAATGTGAGTAACTCGGA 57.537 39.130 0.00 0.00 32.35 4.55
3434 4583 4.627467 CCTTCTGAAATGTGAGTAACTCGG 59.373 45.833 0.00 0.00 32.35 4.63
3435 4584 4.627467 CCCTTCTGAAATGTGAGTAACTCG 59.373 45.833 0.00 0.00 32.35 4.18
3436 4585 4.393371 GCCCTTCTGAAATGTGAGTAACTC 59.607 45.833 0.00 0.00 0.00 3.01
3437 4586 4.042187 AGCCCTTCTGAAATGTGAGTAACT 59.958 41.667 0.00 0.00 0.00 2.24
3438 4587 4.327680 AGCCCTTCTGAAATGTGAGTAAC 58.672 43.478 0.00 0.00 0.00 2.50
3439 4588 4.640771 AGCCCTTCTGAAATGTGAGTAA 57.359 40.909 0.00 0.00 0.00 2.24
3440 4589 5.755409 TTAGCCCTTCTGAAATGTGAGTA 57.245 39.130 0.00 0.00 0.00 2.59
3441 4590 4.640771 TTAGCCCTTCTGAAATGTGAGT 57.359 40.909 0.00 0.00 0.00 3.41
3442 4591 6.521151 AAATTAGCCCTTCTGAAATGTGAG 57.479 37.500 0.00 0.00 0.00 3.51
3443 4592 7.175104 AGTAAATTAGCCCTTCTGAAATGTGA 58.825 34.615 0.00 0.00 0.00 3.58
3444 4593 7.396540 AGTAAATTAGCCCTTCTGAAATGTG 57.603 36.000 0.00 0.00 0.00 3.21
3445 4594 9.178758 CTAAGTAAATTAGCCCTTCTGAAATGT 57.821 33.333 0.00 0.00 34.78 2.71
3446 4595 8.624776 CCTAAGTAAATTAGCCCTTCTGAAATG 58.375 37.037 0.00 0.00 39.76 2.32
3447 4596 8.336987 ACCTAAGTAAATTAGCCCTTCTGAAAT 58.663 33.333 0.00 0.00 39.76 2.17
3448 4597 7.696017 ACCTAAGTAAATTAGCCCTTCTGAAA 58.304 34.615 0.00 0.00 39.76 2.69
3449 4598 7.266905 ACCTAAGTAAATTAGCCCTTCTGAA 57.733 36.000 0.00 0.00 39.76 3.02
3450 4599 6.886178 ACCTAAGTAAATTAGCCCTTCTGA 57.114 37.500 0.00 0.00 39.76 3.27
3451 4600 6.884836 ACAACCTAAGTAAATTAGCCCTTCTG 59.115 38.462 0.00 0.00 39.76 3.02
3452 4601 6.884836 CACAACCTAAGTAAATTAGCCCTTCT 59.115 38.462 0.00 0.00 39.76 2.85
3453 4602 6.882678 TCACAACCTAAGTAAATTAGCCCTTC 59.117 38.462 0.00 0.00 39.76 3.46
3454 4603 6.786122 TCACAACCTAAGTAAATTAGCCCTT 58.214 36.000 0.00 0.00 39.76 3.95
3455 4604 6.382919 TCACAACCTAAGTAAATTAGCCCT 57.617 37.500 0.00 0.00 39.76 5.19
3456 4605 7.556635 AGAATCACAACCTAAGTAAATTAGCCC 59.443 37.037 0.00 0.00 39.76 5.19
3457 4606 8.398665 CAGAATCACAACCTAAGTAAATTAGCC 58.601 37.037 0.00 0.00 39.76 3.93
3458 4607 9.162764 TCAGAATCACAACCTAAGTAAATTAGC 57.837 33.333 0.00 0.00 39.76 3.09
3461 4610 9.178758 GGATCAGAATCACAACCTAAGTAAATT 57.821 33.333 0.00 0.00 33.21 1.82
3462 4611 8.328758 TGGATCAGAATCACAACCTAAGTAAAT 58.671 33.333 0.00 0.00 33.21 1.40
3463 4612 7.606456 GTGGATCAGAATCACAACCTAAGTAAA 59.394 37.037 0.00 0.00 33.21 2.01
3464 4613 7.103641 GTGGATCAGAATCACAACCTAAGTAA 58.896 38.462 0.00 0.00 33.21 2.24
3465 4614 6.212589 TGTGGATCAGAATCACAACCTAAGTA 59.787 38.462 6.70 0.00 33.21 2.24
3466 4615 5.013079 TGTGGATCAGAATCACAACCTAAGT 59.987 40.000 6.70 0.00 33.21 2.24
3467 4616 5.491070 TGTGGATCAGAATCACAACCTAAG 58.509 41.667 6.70 0.00 33.21 2.18
3468 4617 5.497464 TGTGGATCAGAATCACAACCTAA 57.503 39.130 6.70 0.00 33.21 2.69
3469 4618 5.221823 TGTTGTGGATCAGAATCACAACCTA 60.222 40.000 29.71 19.33 43.70 3.08
3470 4619 4.074970 GTTGTGGATCAGAATCACAACCT 58.925 43.478 26.24 0.00 41.64 3.50
3471 4620 3.820467 TGTTGTGGATCAGAATCACAACC 59.180 43.478 29.71 20.19 43.70 3.77
3472 4621 4.275689 TGTGTTGTGGATCAGAATCACAAC 59.724 41.667 28.03 28.03 44.06 3.32
3473 4622 4.459330 TGTGTTGTGGATCAGAATCACAA 58.541 39.130 14.40 14.40 31.67 3.33
3474 4623 4.084011 TGTGTTGTGGATCAGAATCACA 57.916 40.909 5.40 5.40 31.91 3.58
3475 4624 4.456911 ACATGTGTTGTGGATCAGAATCAC 59.543 41.667 0.00 0.00 37.11 3.06
3476 4625 4.654915 ACATGTGTTGTGGATCAGAATCA 58.345 39.130 0.00 0.00 37.11 2.57
3488 4637 1.250328 CCAGATGCCACATGTGTTGT 58.750 50.000 23.79 9.24 39.91 3.32
3489 4638 1.250328 ACCAGATGCCACATGTGTTG 58.750 50.000 23.79 11.11 0.00 3.33
3490 4639 1.999648 AACCAGATGCCACATGTGTT 58.000 45.000 23.79 8.85 0.00 3.32
3491 4640 1.888512 GAAACCAGATGCCACATGTGT 59.111 47.619 23.79 6.10 0.00 3.72
3492 4641 1.887854 TGAAACCAGATGCCACATGTG 59.112 47.619 19.31 19.31 0.00 3.21
3493 4642 1.888512 GTGAAACCAGATGCCACATGT 59.111 47.619 0.00 0.00 0.00 3.21
3494 4643 1.887854 TGTGAAACCAGATGCCACATG 59.112 47.619 0.00 0.00 34.36 3.21
3495 4644 2.291209 TGTGAAACCAGATGCCACAT 57.709 45.000 0.00 0.00 34.36 3.21
3496 4645 1.887854 CATGTGAAACCAGATGCCACA 59.112 47.619 0.00 0.00 41.24 4.17
3497 4646 2.642139 CATGTGAAACCAGATGCCAC 57.358 50.000 0.00 0.00 34.36 5.01
3501 4650 3.692593 TGATCAGCATGTGAAACCAGATG 59.307 43.478 0.00 0.00 39.19 2.90
3502 4651 3.959293 TGATCAGCATGTGAAACCAGAT 58.041 40.909 0.00 0.00 39.19 2.90
3503 4652 3.421919 TGATCAGCATGTGAAACCAGA 57.578 42.857 0.00 0.00 39.19 3.86
3504 4653 4.713824 AATGATCAGCATGTGAAACCAG 57.286 40.909 0.09 0.00 39.19 4.00
3505 4654 5.476254 TGTAAATGATCAGCATGTGAAACCA 59.524 36.000 0.09 0.00 39.19 3.67
3506 4655 5.953183 TGTAAATGATCAGCATGTGAAACC 58.047 37.500 0.09 0.00 39.19 3.27
3507 4656 9.740239 ATAATGTAAATGATCAGCATGTGAAAC 57.260 29.630 0.09 0.00 39.19 2.78
3539 4688 6.605594 TGAGGAAGGAAACAACAACATAAGTT 59.394 34.615 0.00 0.00 38.88 2.66
3540 4689 6.126409 TGAGGAAGGAAACAACAACATAAGT 58.874 36.000 0.00 0.00 0.00 2.24
3541 4690 6.633500 TGAGGAAGGAAACAACAACATAAG 57.367 37.500 0.00 0.00 0.00 1.73
3542 4691 6.633500 CTGAGGAAGGAAACAACAACATAA 57.367 37.500 0.00 0.00 0.00 1.90
3556 4705 0.329596 CTTTCCCACCCTGAGGAAGG 59.670 60.000 0.00 0.34 42.91 3.46
3557 4706 1.362224 TCTTTCCCACCCTGAGGAAG 58.638 55.000 0.00 0.00 42.91 3.46
3558 4707 1.827792 TTCTTTCCCACCCTGAGGAA 58.172 50.000 0.00 0.00 40.41 3.36
3559 4708 1.635487 CATTCTTTCCCACCCTGAGGA 59.365 52.381 0.00 0.00 36.73 3.71
3560 4709 1.635487 TCATTCTTTCCCACCCTGAGG 59.365 52.381 0.00 0.00 40.04 3.86
3561 4710 2.040278 TGTCATTCTTTCCCACCCTGAG 59.960 50.000 0.00 0.00 0.00 3.35
3562 4711 2.061848 TGTCATTCTTTCCCACCCTGA 58.938 47.619 0.00 0.00 0.00 3.86
3563 4712 2.584835 TGTCATTCTTTCCCACCCTG 57.415 50.000 0.00 0.00 0.00 4.45
3564 4713 3.611025 TTTGTCATTCTTTCCCACCCT 57.389 42.857 0.00 0.00 0.00 4.34
3565 4714 6.544928 AATATTTGTCATTCTTTCCCACCC 57.455 37.500 0.00 0.00 0.00 4.61
3566 4715 9.936759 TTAAAATATTTGTCATTCTTTCCCACC 57.063 29.630 0.39 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.