Multiple sequence alignment - TraesCS5D01G000900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G000900 chr5D 100.000 7144 0 0 1 7144 942274 935131 0.000000e+00 13193.0
1 TraesCS5D01G000900 chr5D 97.647 85 2 0 3162 3246 14532755 14532671 5.770000e-31 147.0
2 TraesCS5D01G000900 chr5B 93.865 3912 99 45 1360 5194 210734 214581 0.000000e+00 5764.0
3 TraesCS5D01G000900 chr5B 83.112 977 54 45 5627 6570 214922 215820 0.000000e+00 787.0
4 TraesCS5D01G000900 chr5B 87.033 509 49 9 3 508 209320 209814 6.260000e-155 558.0
5 TraesCS5D01G000900 chr5B 94.398 357 11 3 5236 5588 214573 214924 2.270000e-149 540.0
6 TraesCS5D01G000900 chr5B 85.393 534 49 14 2493 3022 75494 74986 1.770000e-145 527.0
7 TraesCS5D01G000900 chr5B 84.473 541 56 12 2497 3027 77517 76995 6.390000e-140 508.0
8 TraesCS5D01G000900 chr5B 81.967 549 47 23 631 1148 209939 210466 1.110000e-112 418.0
9 TraesCS5D01G000900 chr5B 88.015 267 28 3 6880 7144 216353 216617 5.380000e-81 313.0
10 TraesCS5D01G000900 chr5B 83.557 298 33 8 2049 2345 76917 76635 1.530000e-66 265.0
11 TraesCS5D01G000900 chr5B 84.884 172 22 2 2889 3060 73610 73443 3.430000e-38 171.0
12 TraesCS5D01G000900 chr5A 93.883 1733 80 8 1678 3395 639585 641306 0.000000e+00 2590.0
13 TraesCS5D01G000900 chr5A 87.381 1989 116 56 4481 6393 642431 644360 0.000000e+00 2158.0
14 TraesCS5D01G000900 chr5A 97.189 498 13 1 3405 3901 641290 641787 0.000000e+00 841.0
15 TraesCS5D01G000900 chr5A 88.317 505 32 15 3984 4475 641786 642276 1.340000e-161 580.0
16 TraesCS5D01G000900 chr5A 82.517 715 48 37 936 1617 638896 639566 2.250000e-154 556.0
17 TraesCS5D01G000900 chr5A 79.827 347 40 16 3 329 637835 638171 7.210000e-55 226.0
18 TraesCS5D01G000900 chr5A 94.245 139 5 1 7009 7144 645075 645213 7.260000e-50 209.0
19 TraesCS5D01G000900 chr5A 97.959 49 1 0 6496 6544 644402 644450 1.280000e-12 86.1
20 TraesCS5D01G000900 chr7A 82.011 378 22 17 6810 7144 728649786 728650160 5.460000e-71 279.0
21 TraesCS5D01G000900 chr7A 92.188 64 5 0 2565 2628 660425928 660425991 2.740000e-14 91.6
22 TraesCS5D01G000900 chr3B 77.483 453 60 18 2179 2628 704331349 704330936 4.310000e-57 233.0
23 TraesCS5D01G000900 chr2B 76.380 453 64 21 2179 2628 467795502 467795914 3.380000e-48 204.0
24 TraesCS5D01G000900 chr4B 75.717 453 66 21 2179 2628 429296482 429296893 3.400000e-43 187.0
25 TraesCS5D01G000900 chr6D 75.771 454 62 21 2179 2628 469059872 469060281 1.220000e-42 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G000900 chr5D 935131 942274 7143 True 13193.000000 13193 100.00000 1 7144 1 chr5D.!!$R1 7143
1 TraesCS5D01G000900 chr5B 209320 216617 7297 False 1396.666667 5764 88.06500 3 7144 6 chr5B.!!$F1 7141
2 TraesCS5D01G000900 chr5B 73443 77517 4074 True 367.750000 527 84.57675 2049 3060 4 chr5B.!!$R1 1011
3 TraesCS5D01G000900 chr5A 637835 645213 7378 False 905.762500 2590 90.16475 3 7144 8 chr5A.!!$F1 7141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 986 0.178981 AAGCAAGCCAAGCAAGAGGA 60.179 50.0 0.00 0.0 0.00 3.71 F
1423 1810 0.036388 CTGCCTCTCGTTTGCCCTTA 60.036 55.0 0.00 0.0 0.00 2.69 F
3401 6330 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
3759 6688 0.108615 GCAGAAGCGTTCTAGGCTGA 60.109 55.0 0.00 0.0 38.53 4.26 F
4951 8070 0.378257 CTGTTGCTGGCGCGAATATT 59.622 50.0 12.10 0.0 39.65 1.28 F
5221 8409 0.038166 GGAACAGGCACCTTCCATCA 59.962 55.0 2.99 0.0 36.13 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 2598 1.070758 TGTTCAGAAAGAGCGCCTTCT 59.929 47.619 2.29 7.54 33.02 2.85 R
3408 6337 0.525311 CCTGCAAACACACACACACA 59.475 50.000 0.00 0.00 0.00 3.72 R
5202 8390 0.038166 TGATGGAAGGTGCCTGTTCC 59.962 55.000 2.70 2.70 42.39 3.62 R
5205 8393 1.145738 ACTTTGATGGAAGGTGCCTGT 59.854 47.619 0.00 0.00 0.00 4.00 R
6048 9309 0.039256 CCATTGCCACACAAACTCGG 60.039 55.000 0.00 0.00 42.86 4.63 R
6853 10483 0.613260 CTGGATCGTCCCCAACAAGA 59.387 55.000 2.23 0.00 35.03 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 79 6.036626 CACAAAACCACGCCTTTTATCTTTTT 59.963 34.615 0.00 0.00 0.00 1.94
119 135 7.673641 ATCCTCTCCATAATAAGCATCCTAG 57.326 40.000 0.00 0.00 0.00 3.02
120 136 5.423610 TCCTCTCCATAATAAGCATCCTAGC 59.576 44.000 0.00 0.00 0.00 3.42
122 138 6.609212 CCTCTCCATAATAAGCATCCTAGCTA 59.391 42.308 0.00 0.00 45.89 3.32
229 248 6.875948 TTAGAGCTAAATGCACTTTCACAA 57.124 33.333 0.00 0.00 45.94 3.33
243 262 4.397348 ACAAGGGATTGTGACGCC 57.603 55.556 0.00 0.00 33.23 5.68
248 267 1.077787 GGGATTGTGACGCCCATGA 60.078 57.895 0.00 0.00 41.64 3.07
345 397 1.139853 GCCGGAGAAGAGATGTTCCAT 59.860 52.381 5.05 0.00 0.00 3.41
350 402 4.039004 CGGAGAAGAGATGTTCCATCTCAT 59.961 45.833 27.17 19.67 45.18 2.90
370 423 4.899457 TCATACACGACCCCTCATAGAAAT 59.101 41.667 0.00 0.00 0.00 2.17
372 425 6.724441 TCATACACGACCCCTCATAGAAATAT 59.276 38.462 0.00 0.00 0.00 1.28
374 427 4.022242 ACACGACCCCTCATAGAAATATCG 60.022 45.833 0.00 0.00 0.00 2.92
381 434 3.261897 CCTCATAGAAATATCGTGGCCCT 59.738 47.826 0.00 0.00 0.00 5.19
398 451 0.608035 CCTTAAGAAAGGCGGCACCA 60.608 55.000 13.08 0.00 45.78 4.17
408 461 2.664851 CGGCACCACAGCTTCGAA 60.665 61.111 0.00 0.00 34.17 3.71
418 471 2.737376 GCTTCGAAACGACGCCCT 60.737 61.111 10.60 0.00 43.55 5.19
508 561 3.868985 ACGCCACCGGTCAAACCT 61.869 61.111 2.59 0.00 35.66 3.50
527 580 2.349755 GCCTTCGCCACCACCTTA 59.650 61.111 0.00 0.00 0.00 2.69
528 581 1.745489 GCCTTCGCCACCACCTTAG 60.745 63.158 0.00 0.00 0.00 2.18
534 587 1.908483 GCCACCACCTTAGAGGGAG 59.092 63.158 0.00 0.00 40.58 4.30
539 592 0.543749 CCACCTTAGAGGGAGCCAAG 59.456 60.000 0.00 0.00 40.58 3.61
541 594 1.484240 CACCTTAGAGGGAGCCAAGAG 59.516 57.143 0.00 0.00 40.58 2.85
542 595 1.362932 ACCTTAGAGGGAGCCAAGAGA 59.637 52.381 0.00 0.00 40.58 3.10
543 596 1.760029 CCTTAGAGGGAGCCAAGAGAC 59.240 57.143 0.00 0.00 0.00 3.36
545 598 0.395862 TAGAGGGAGCCAAGAGACGG 60.396 60.000 0.00 0.00 0.00 4.79
546 599 2.685380 AGGGAGCCAAGAGACGGG 60.685 66.667 0.00 0.00 0.00 5.28
547 600 3.003763 GGGAGCCAAGAGACGGGT 61.004 66.667 0.00 0.00 36.82 5.28
551 604 1.303888 AGCCAAGAGACGGGTCGTA 60.304 57.895 0.00 0.00 41.37 3.43
558 611 1.959282 AGAGACGGGTCGTAAAACAGT 59.041 47.619 0.00 0.00 41.37 3.55
559 612 3.149196 AGAGACGGGTCGTAAAACAGTA 58.851 45.455 0.00 0.00 41.37 2.74
560 613 3.760684 AGAGACGGGTCGTAAAACAGTAT 59.239 43.478 0.00 0.00 41.37 2.12
587 647 2.975799 GCGGGTGGAAAAGCGACA 60.976 61.111 0.00 0.00 0.00 4.35
608 668 2.537143 ACCTTTTCTCGAGCCCTAAGA 58.463 47.619 7.81 0.00 0.00 2.10
621 681 3.836562 AGCCCTAAGACTCGTTTCCTTTA 59.163 43.478 0.00 0.00 0.00 1.85
623 683 4.571176 GCCCTAAGACTCGTTTCCTTTATG 59.429 45.833 0.00 0.00 0.00 1.90
625 685 5.581085 CCCTAAGACTCGTTTCCTTTATGTG 59.419 44.000 0.00 0.00 0.00 3.21
626 686 5.063564 CCTAAGACTCGTTTCCTTTATGTGC 59.936 44.000 0.00 0.00 0.00 4.57
627 687 2.993899 AGACTCGTTTCCTTTATGTGCG 59.006 45.455 0.00 0.00 0.00 5.34
629 689 2.478894 ACTCGTTTCCTTTATGTGCGTG 59.521 45.455 0.00 0.00 0.00 5.34
698 854 1.338200 GGACCTGGCAACTCACTAGTG 60.338 57.143 17.17 17.17 35.62 2.74
699 855 1.344763 GACCTGGCAACTCACTAGTGT 59.655 52.381 21.99 1.10 35.62 3.55
700 856 1.070758 ACCTGGCAACTCACTAGTGTG 59.929 52.381 21.99 21.22 45.07 3.82
701 857 1.070758 CCTGGCAACTCACTAGTGTGT 59.929 52.381 21.80 21.80 44.14 3.72
702 858 2.408050 CTGGCAACTCACTAGTGTGTC 58.592 52.381 26.09 17.72 44.14 3.67
742 899 3.005897 GGGGAGAGAAAAAGGAAAAGTGC 59.994 47.826 0.00 0.00 0.00 4.40
758 924 0.253327 GTGCGGGGGAAGAAGAAGAT 59.747 55.000 0.00 0.00 0.00 2.40
812 983 1.181098 GGGAAGCAAGCCAAGCAAGA 61.181 55.000 0.00 0.00 0.00 3.02
813 984 0.243095 GGAAGCAAGCCAAGCAAGAG 59.757 55.000 0.00 0.00 0.00 2.85
814 985 0.243095 GAAGCAAGCCAAGCAAGAGG 59.757 55.000 0.00 0.00 0.00 3.69
815 986 0.178981 AAGCAAGCCAAGCAAGAGGA 60.179 50.000 0.00 0.00 0.00 3.71
816 987 0.178981 AGCAAGCCAAGCAAGAGGAA 60.179 50.000 0.00 0.00 0.00 3.36
817 988 0.243095 GCAAGCCAAGCAAGAGGAAG 59.757 55.000 0.00 0.00 0.00 3.46
818 989 0.886563 CAAGCCAAGCAAGAGGAAGG 59.113 55.000 0.00 0.00 0.00 3.46
819 990 0.773644 AAGCCAAGCAAGAGGAAGGA 59.226 50.000 0.00 0.00 0.00 3.36
845 1016 1.741525 GCCAGAGCTAGAGCCAGAG 59.258 63.158 0.00 0.00 43.38 3.35
846 1017 1.741525 CCAGAGCTAGAGCCAGAGC 59.258 63.158 0.00 0.00 43.38 4.09
848 1019 1.042003 CAGAGCTAGAGCCAGAGCCA 61.042 60.000 0.00 0.00 43.38 4.75
849 1020 0.756442 AGAGCTAGAGCCAGAGCCAG 60.756 60.000 0.00 0.00 43.38 4.85
850 1021 0.754957 GAGCTAGAGCCAGAGCCAGA 60.755 60.000 0.00 0.00 43.38 3.86
856 1027 2.975075 AGAGCCAGAGCCAGATAGATT 58.025 47.619 0.00 0.00 41.25 2.40
1144 1438 0.874390 GGAGCTCAACACGAATGCAA 59.126 50.000 17.19 0.00 0.00 4.08
1145 1439 1.470098 GGAGCTCAACACGAATGCAAT 59.530 47.619 17.19 0.00 0.00 3.56
1148 1442 1.199789 GCTCAACACGAATGCAATCCA 59.800 47.619 0.00 0.00 0.00 3.41
1150 1444 3.688272 CTCAACACGAATGCAATCCATC 58.312 45.455 0.00 0.00 31.43 3.51
1151 1445 2.423185 TCAACACGAATGCAATCCATCC 59.577 45.455 0.00 0.00 31.43 3.51
1152 1446 1.392589 ACACGAATGCAATCCATCCC 58.607 50.000 0.00 0.00 31.43 3.85
1154 1448 0.552848 ACGAATGCAATCCATCCCCT 59.447 50.000 0.00 0.00 31.43 4.79
1155 1449 1.242076 CGAATGCAATCCATCCCCTC 58.758 55.000 0.00 0.00 31.43 4.30
1156 1450 1.202855 CGAATGCAATCCATCCCCTCT 60.203 52.381 0.00 0.00 31.43 3.69
1157 1451 2.038952 CGAATGCAATCCATCCCCTCTA 59.961 50.000 0.00 0.00 31.43 2.43
1158 1452 3.416156 GAATGCAATCCATCCCCTCTAC 58.584 50.000 0.00 0.00 31.43 2.59
1160 1454 1.140312 GCAATCCATCCCCTCTACCA 58.860 55.000 0.00 0.00 0.00 3.25
1162 1456 2.487986 GCAATCCATCCCCTCTACCAAG 60.488 54.545 0.00 0.00 0.00 3.61
1167 1461 1.137086 CATCCCCTCTACCAAGACACG 59.863 57.143 0.00 0.00 0.00 4.49
1169 1463 1.541310 CCCCTCTACCAAGACACGCA 61.541 60.000 0.00 0.00 0.00 5.24
1170 1464 0.389948 CCCTCTACCAAGACACGCAC 60.390 60.000 0.00 0.00 0.00 5.34
1191 1498 1.649664 CCGTTTCTCAGCAGATCTGG 58.350 55.000 23.89 8.67 43.06 3.86
1192 1499 1.066573 CCGTTTCTCAGCAGATCTGGT 60.067 52.381 21.55 21.55 43.06 4.00
1193 1500 2.613977 CCGTTTCTCAGCAGATCTGGTT 60.614 50.000 24.44 0.22 43.06 3.67
1230 1565 7.014092 TCAATTTTGATTCAGTTTGGTTTGC 57.986 32.000 0.00 0.00 31.01 3.68
1233 1568 8.610896 CAATTTTGATTCAGTTTGGTTTGCTTA 58.389 29.630 0.00 0.00 0.00 3.09
1253 1609 6.978080 TGCTTAATTCACTTCACCAAAGAAAC 59.022 34.615 0.00 0.00 38.44 2.78
1261 1617 5.861787 CACTTCACCAAAGAAACGACTTTTT 59.138 36.000 0.00 0.00 37.91 1.94
1262 1618 7.024768 CACTTCACCAAAGAAACGACTTTTTA 58.975 34.615 0.00 0.00 37.91 1.52
1263 1619 7.007995 CACTTCACCAAAGAAACGACTTTTTAC 59.992 37.037 0.00 0.00 37.91 2.01
1265 1621 6.778108 TCACCAAAGAAACGACTTTTTACTC 58.222 36.000 0.00 0.00 37.91 2.59
1266 1622 6.596497 TCACCAAAGAAACGACTTTTTACTCT 59.404 34.615 0.00 0.00 37.91 3.24
1267 1623 6.905609 CACCAAAGAAACGACTTTTTACTCTC 59.094 38.462 0.00 0.00 37.91 3.20
1299 1663 5.685075 CGGCCACTAGGTCTTATCTTGATTT 60.685 44.000 2.24 0.00 37.38 2.17
1301 1665 6.408662 GGCCACTAGGTCTTATCTTGATTTCT 60.409 42.308 0.00 0.00 36.28 2.52
1302 1666 6.481644 GCCACTAGGTCTTATCTTGATTTCTG 59.518 42.308 0.00 0.00 37.19 3.02
1303 1667 7.633772 GCCACTAGGTCTTATCTTGATTTCTGA 60.634 40.741 0.00 0.00 37.19 3.27
1304 1668 8.428063 CCACTAGGTCTTATCTTGATTTCTGAT 58.572 37.037 0.00 0.00 0.00 2.90
1305 1669 9.829507 CACTAGGTCTTATCTTGATTTCTGATT 57.170 33.333 0.00 0.00 0.00 2.57
1334 1698 7.766219 AATGAAAAGATATGCAACATTCAGC 57.234 32.000 0.00 0.00 0.00 4.26
1350 1714 1.071605 CAGCGCTTGGTCTTACAGAC 58.928 55.000 7.50 0.00 44.32 3.51
1423 1810 0.036388 CTGCCTCTCGTTTGCCCTTA 60.036 55.000 0.00 0.00 0.00 2.69
1562 1949 3.699894 CGGTGCTCAGGAGGTGCT 61.700 66.667 0.00 0.00 36.94 4.40
1630 2023 9.361315 CTCATTCATTCATATGTCTTGCAAAAA 57.639 29.630 0.00 0.00 33.34 1.94
1699 2102 8.423906 TCCCTTTTTATTTGTAGGTTGCAATA 57.576 30.769 0.59 0.00 0.00 1.90
1772 2175 3.802685 GTGGCATGTCTATTCGTAAGTCC 59.197 47.826 0.00 0.00 39.48 3.85
2171 2598 5.411781 GCTGTTTAGTAGCTGCTTCTCTTA 58.588 41.667 10.41 0.00 38.14 2.10
2186 2613 3.093057 TCTCTTAGAAGGCGCTCTTTCT 58.907 45.455 20.21 20.21 35.50 2.52
2187 2614 3.119316 TCTCTTAGAAGGCGCTCTTTCTG 60.119 47.826 23.14 13.09 35.50 3.02
2345 3691 6.092670 CACCCATTACATTGTTCTCACACTAG 59.907 42.308 0.00 0.00 30.32 2.57
2508 3923 9.691362 CCTAAATTTTGCAGTGTAGTTTGTTAT 57.309 29.630 0.00 0.00 0.00 1.89
2548 3963 2.721090 GTGTCGAAAACTTTCAGCATGC 59.279 45.455 10.51 10.51 37.01 4.06
2958 4382 4.974645 AGACCTTCAGTGTTCCATGTTA 57.025 40.909 0.00 0.00 0.00 2.41
3125 6054 9.190317 AGTTCCATACGATCTTATATATCTGCA 57.810 33.333 0.00 0.00 0.00 4.41
3126 6055 9.457110 GTTCCATACGATCTTATATATCTGCAG 57.543 37.037 7.63 7.63 0.00 4.41
3127 6056 8.980481 TCCATACGATCTTATATATCTGCAGA 57.020 34.615 20.79 20.79 0.00 4.26
3128 6057 9.061435 TCCATACGATCTTATATATCTGCAGAG 57.939 37.037 22.96 6.55 0.00 3.35
3351 6280 5.030295 CGTTCACCATCATTTTGTAGCATC 58.970 41.667 0.00 0.00 0.00 3.91
3401 6330 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3402 6331 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3403 6332 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3404 6333 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3405 6334 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3406 6335 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3407 6336 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3408 6337 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3471 6400 4.090642 GTGTGCAAGAGAAAGATGAGTACG 59.909 45.833 0.00 0.00 0.00 3.67
3649 6578 1.256812 CGATGGAGCCCAAAAGGTTT 58.743 50.000 0.00 0.00 36.95 3.27
3675 6604 2.181125 AGGGCATTGCACATGATTTGA 58.819 42.857 14.41 0.00 32.33 2.69
3759 6688 0.108615 GCAGAAGCGTTCTAGGCTGA 60.109 55.000 0.00 0.00 38.53 4.26
3887 6816 5.091261 ACGGTTCTGATTCTCAAGCTAAT 57.909 39.130 0.00 0.00 0.00 1.73
3934 6864 1.642762 AGGCCCATGATTTCCTTCTGT 59.357 47.619 0.00 0.00 0.00 3.41
3937 6867 3.620488 GCCCATGATTTCCTTCTGTACA 58.380 45.455 0.00 0.00 0.00 2.90
3939 6869 4.848357 CCCATGATTTCCTTCTGTACACT 58.152 43.478 0.00 0.00 0.00 3.55
3953 6883 6.000891 TCTGTACACTTTTGTTGCATGATC 57.999 37.500 0.00 0.00 37.15 2.92
3961 6891 1.521457 GTTGCATGATCCGCGGAGA 60.521 57.895 33.87 22.48 0.00 3.71
3977 6907 3.242543 GCGGAGATCATAGTGTTTGCTTG 60.243 47.826 0.00 0.00 0.00 4.01
3978 6908 3.242543 CGGAGATCATAGTGTTTGCTTGC 60.243 47.826 0.00 0.00 0.00 4.01
4118 7049 9.856488 TCACAGACTTACTTTAGATGTATTCAC 57.144 33.333 0.00 0.00 0.00 3.18
4310 7254 2.919666 GCAATTTGCCTGTCGTGTAT 57.080 45.000 10.34 0.00 37.42 2.29
4437 7390 6.211986 ACATCCCATATATTTCCATTTGCAGG 59.788 38.462 0.00 0.00 0.00 4.85
4549 7651 6.833933 TGCTGACAATCTACAGTATTCTCCTA 59.166 38.462 0.00 0.00 36.62 2.94
4550 7652 7.342026 TGCTGACAATCTACAGTATTCTCCTAA 59.658 37.037 0.00 0.00 36.62 2.69
4568 7670 6.150976 TCTCCTAAATTGTTTGCATCGATTGT 59.849 34.615 0.00 0.00 0.00 2.71
4647 7753 6.796785 TTTACCCTTGATAGGTACCACTAC 57.203 41.667 15.94 3.14 39.60 2.73
4945 8064 3.349006 AGTTCTGTTGCTGGCGCG 61.349 61.111 0.00 0.00 39.65 6.86
4951 8070 0.378257 CTGTTGCTGGCGCGAATATT 59.622 50.000 12.10 0.00 39.65 1.28
5002 8128 7.246674 AGGTATGCATATCTTTTGTGTTACG 57.753 36.000 13.97 0.00 0.00 3.18
5020 8146 9.926158 TGTGTTACGTATAGTCTTTAATTTCCA 57.074 29.630 0.00 0.00 0.00 3.53
5032 8158 9.739276 AGTCTTTAATTTCCATATCTGTCACAA 57.261 29.630 0.00 0.00 0.00 3.33
5206 8394 5.734720 TCAGTCATCTGAAATACCAGGAAC 58.265 41.667 0.00 0.00 46.17 3.62
5207 8395 5.248248 TCAGTCATCTGAAATACCAGGAACA 59.752 40.000 0.00 0.00 46.17 3.18
5208 8396 5.583854 CAGTCATCTGAAATACCAGGAACAG 59.416 44.000 0.00 0.00 43.76 3.16
5209 8397 4.878397 GTCATCTGAAATACCAGGAACAGG 59.122 45.833 0.00 0.00 42.48 4.00
5210 8398 3.350219 TCTGAAATACCAGGAACAGGC 57.650 47.619 0.00 0.00 39.28 4.85
5211 8399 2.642311 TCTGAAATACCAGGAACAGGCA 59.358 45.455 0.00 0.00 39.28 4.75
5212 8400 2.749621 CTGAAATACCAGGAACAGGCAC 59.250 50.000 0.00 0.00 39.28 5.01
5213 8401 2.092323 GAAATACCAGGAACAGGCACC 58.908 52.381 0.00 0.00 39.28 5.01
5214 8402 1.372501 AATACCAGGAACAGGCACCT 58.627 50.000 0.00 0.00 39.28 4.00
5215 8403 1.372501 ATACCAGGAACAGGCACCTT 58.627 50.000 0.00 0.00 39.28 3.50
5216 8404 0.690762 TACCAGGAACAGGCACCTTC 59.309 55.000 0.00 0.00 39.28 3.46
5217 8405 1.303643 CCAGGAACAGGCACCTTCC 60.304 63.158 0.00 0.00 36.28 3.46
5218 8406 1.455849 CAGGAACAGGCACCTTCCA 59.544 57.895 9.57 0.00 37.94 3.53
5219 8407 0.038744 CAGGAACAGGCACCTTCCAT 59.961 55.000 9.57 0.00 37.94 3.41
5220 8408 0.329596 AGGAACAGGCACCTTCCATC 59.670 55.000 9.57 0.00 37.94 3.51
5221 8409 0.038166 GGAACAGGCACCTTCCATCA 59.962 55.000 2.99 0.00 36.13 3.07
5222 8410 1.547675 GGAACAGGCACCTTCCATCAA 60.548 52.381 2.99 0.00 36.13 2.57
5223 8411 2.238521 GAACAGGCACCTTCCATCAAA 58.761 47.619 0.00 0.00 0.00 2.69
5224 8412 1.915141 ACAGGCACCTTCCATCAAAG 58.085 50.000 0.00 0.00 0.00 2.77
5225 8413 1.145738 ACAGGCACCTTCCATCAAAGT 59.854 47.619 0.00 0.00 0.00 2.66
5226 8414 1.542915 CAGGCACCTTCCATCAAAGTG 59.457 52.381 0.00 0.00 0.00 3.16
5227 8415 1.145738 AGGCACCTTCCATCAAAGTGT 59.854 47.619 0.00 0.00 0.00 3.55
5228 8416 1.541588 GGCACCTTCCATCAAAGTGTC 59.458 52.381 0.00 0.00 0.00 3.67
5229 8417 1.541588 GCACCTTCCATCAAAGTGTCC 59.458 52.381 0.00 0.00 0.00 4.02
5230 8418 2.815589 GCACCTTCCATCAAAGTGTCCT 60.816 50.000 0.00 0.00 0.00 3.85
5231 8419 2.816087 CACCTTCCATCAAAGTGTCCTG 59.184 50.000 0.00 0.00 0.00 3.86
5232 8420 1.815003 CCTTCCATCAAAGTGTCCTGC 59.185 52.381 0.00 0.00 0.00 4.85
5233 8421 2.507484 CTTCCATCAAAGTGTCCTGCA 58.493 47.619 0.00 0.00 0.00 4.41
5234 8422 2.885135 TCCATCAAAGTGTCCTGCAT 57.115 45.000 0.00 0.00 0.00 3.96
5235 8423 3.998913 TCCATCAAAGTGTCCTGCATA 57.001 42.857 0.00 0.00 0.00 3.14
5236 8424 3.877559 TCCATCAAAGTGTCCTGCATAG 58.122 45.455 0.00 0.00 0.00 2.23
5237 8425 2.947652 CCATCAAAGTGTCCTGCATAGG 59.052 50.000 0.00 0.00 46.06 2.57
5238 8426 2.113860 TCAAAGTGTCCTGCATAGGC 57.886 50.000 0.00 0.00 44.22 3.93
5323 8511 9.376075 TGTTCATGATTCTTTTGTTGCTTTTTA 57.624 25.926 0.00 0.00 0.00 1.52
5577 8794 7.540055 GTGAGATTGTGGTTTCATCATTCTTTC 59.460 37.037 0.00 0.00 0.00 2.62
5588 8805 9.630098 GTTTCATCATTCTTTCTGAAGCATTTA 57.370 29.630 0.00 0.00 38.18 1.40
5651 8868 6.417191 TTTTTCACTCGATATTTCCTTCCG 57.583 37.500 0.00 0.00 0.00 4.30
5671 8888 4.093952 CGCCACTGCTCGCAAAGG 62.094 66.667 5.26 5.26 34.43 3.11
5672 8889 2.980233 GCCACTGCTCGCAAAGGT 60.980 61.111 9.94 0.00 33.53 3.50
5674 8891 2.032981 CCACTGCTCGCAAAGGTTT 58.967 52.632 0.00 0.00 0.00 3.27
5675 8892 0.385390 CCACTGCTCGCAAAGGTTTT 59.615 50.000 0.00 0.00 0.00 2.43
5676 8893 1.202405 CCACTGCTCGCAAAGGTTTTT 60.202 47.619 0.00 0.00 0.00 1.94
5730 8987 1.597742 CCTGTCTTGTTGGTGGTCTG 58.402 55.000 0.00 0.00 0.00 3.51
5733 8990 2.103094 CTGTCTTGTTGGTGGTCTGAGA 59.897 50.000 0.00 0.00 0.00 3.27
5734 8991 2.103094 TGTCTTGTTGGTGGTCTGAGAG 59.897 50.000 0.00 0.00 0.00 3.20
5735 8992 2.103263 GTCTTGTTGGTGGTCTGAGAGT 59.897 50.000 0.00 0.00 0.00 3.24
5761 9018 6.022821 TGACTTTGTAAAACGTTGTAACTGC 58.977 36.000 0.00 0.00 0.00 4.40
5966 9223 1.010797 GCGCGCATGTCAAGGTATG 60.011 57.895 29.10 0.00 0.00 2.39
5967 9224 1.010797 CGCGCATGTCAAGGTATGC 60.011 57.895 8.75 0.00 44.67 3.14
6003 9264 1.234529 CCTCCCTCCCTCCCTAGTG 59.765 68.421 0.00 0.00 0.00 2.74
6028 9289 3.676873 GCAGCAAGTTGTTATGGATTGGG 60.677 47.826 4.48 0.00 0.00 4.12
6056 9317 1.758783 GCTTTTGCTGACCGAGTTTG 58.241 50.000 0.00 0.00 43.35 2.93
6057 9318 1.065551 GCTTTTGCTGACCGAGTTTGT 59.934 47.619 0.00 0.00 43.35 2.83
6058 9319 2.719798 CTTTTGCTGACCGAGTTTGTG 58.280 47.619 0.00 0.00 0.00 3.33
6059 9320 1.745232 TTTGCTGACCGAGTTTGTGT 58.255 45.000 0.00 0.00 0.00 3.72
6060 9321 1.013596 TTGCTGACCGAGTTTGTGTG 58.986 50.000 0.00 0.00 0.00 3.82
6061 9322 0.813610 TGCTGACCGAGTTTGTGTGG 60.814 55.000 0.00 0.00 0.00 4.17
6062 9323 1.941812 CTGACCGAGTTTGTGTGGC 59.058 57.895 0.00 0.00 0.00 5.01
6063 9324 0.813610 CTGACCGAGTTTGTGTGGCA 60.814 55.000 0.00 0.00 0.00 4.92
6064 9325 0.393132 TGACCGAGTTTGTGTGGCAA 60.393 50.000 0.00 0.00 34.87 4.52
6068 9329 0.039256 CGAGTTTGTGTGGCAATGGG 60.039 55.000 0.00 0.00 36.89 4.00
6144 9405 4.832608 GGCGAACGGTGGCCTAGG 62.833 72.222 20.46 3.67 44.86 3.02
6297 9590 9.634163 CATCCCATTCATGTGTATATTTTCATG 57.366 33.333 0.00 0.00 38.96 3.07
6298 9591 8.180706 TCCCATTCATGTGTATATTTTCATGG 57.819 34.615 0.00 0.00 38.39 3.66
6299 9592 8.003629 TCCCATTCATGTGTATATTTTCATGGA 58.996 33.333 0.00 0.00 38.39 3.41
6300 9593 8.301720 CCCATTCATGTGTATATTTTCATGGAG 58.698 37.037 0.00 0.00 38.39 3.86
6301 9594 7.811236 CCATTCATGTGTATATTTTCATGGAGC 59.189 37.037 0.00 0.00 38.39 4.70
6302 9595 6.882610 TCATGTGTATATTTTCATGGAGCC 57.117 37.500 0.00 0.00 38.39 4.70
6303 9596 5.469760 TCATGTGTATATTTTCATGGAGCCG 59.530 40.000 0.00 0.00 38.39 5.52
6304 9597 5.029807 TGTGTATATTTTCATGGAGCCGA 57.970 39.130 0.00 0.00 0.00 5.54
6305 9598 5.056480 TGTGTATATTTTCATGGAGCCGAG 58.944 41.667 0.00 0.00 0.00 4.63
6306 9599 4.065088 TGTATATTTTCATGGAGCCGAGC 58.935 43.478 0.00 0.00 0.00 5.03
6307 9600 2.708216 TATTTTCATGGAGCCGAGCA 57.292 45.000 0.00 0.00 0.00 4.26
6308 9601 2.062971 ATTTTCATGGAGCCGAGCAT 57.937 45.000 0.00 0.00 0.00 3.79
6328 9625 2.046507 GTGGTCAGCAGCAGGAGG 60.047 66.667 0.00 0.00 0.00 4.30
6388 9685 0.651610 GCATCGATTGTAGCGCGTTG 60.652 55.000 8.43 0.00 0.00 4.10
6389 9686 0.645355 CATCGATTGTAGCGCGTTGT 59.355 50.000 8.43 0.00 0.00 3.32
6392 9689 1.136474 TCGATTGTAGCGCGTTGTTTG 60.136 47.619 8.43 0.00 0.00 2.93
6393 9690 1.397945 CGATTGTAGCGCGTTGTTTGT 60.398 47.619 8.43 0.00 0.00 2.83
6396 9693 1.816370 TGTAGCGCGTTGTTTGTTTG 58.184 45.000 8.43 0.00 0.00 2.93
6398 9695 2.178783 GTAGCGCGTTGTTTGTTTGTT 58.821 42.857 8.43 0.00 0.00 2.83
6400 9697 1.388431 AGCGCGTTGTTTGTTTGTTTG 59.612 42.857 8.43 0.00 0.00 2.93
6403 9700 3.788941 CGCGTTGTTTGTTTGTTTGTTT 58.211 36.364 0.00 0.00 0.00 2.83
6405 9702 4.519147 GCGTTGTTTGTTTGTTTGTTTGT 58.481 34.783 0.00 0.00 0.00 2.83
6406 9703 4.964555 GCGTTGTTTGTTTGTTTGTTTGTT 59.035 33.333 0.00 0.00 0.00 2.83
6407 9704 5.452623 GCGTTGTTTGTTTGTTTGTTTGTTT 59.547 32.000 0.00 0.00 0.00 2.83
6408 9705 6.556812 GCGTTGTTTGTTTGTTTGTTTGTTTG 60.557 34.615 0.00 0.00 0.00 2.93
6409 9706 6.466097 CGTTGTTTGTTTGTTTGTTTGTTTGT 59.534 30.769 0.00 0.00 0.00 2.83
6410 9707 7.007456 CGTTGTTTGTTTGTTTGTTTGTTTGTT 59.993 29.630 0.00 0.00 0.00 2.83
6411 9708 8.639428 GTTGTTTGTTTGTTTGTTTGTTTGTTT 58.361 25.926 0.00 0.00 0.00 2.83
6412 9709 8.161754 TGTTTGTTTGTTTGTTTGTTTGTTTG 57.838 26.923 0.00 0.00 0.00 2.93
6413 9710 7.807907 TGTTTGTTTGTTTGTTTGTTTGTTTGT 59.192 25.926 0.00 0.00 0.00 2.83
6414 9711 8.639428 GTTTGTTTGTTTGTTTGTTTGTTTGTT 58.361 25.926 0.00 0.00 0.00 2.83
6415 9712 8.742554 TTGTTTGTTTGTTTGTTTGTTTGTTT 57.257 23.077 0.00 0.00 0.00 2.83
6416 9713 8.161754 TGTTTGTTTGTTTGTTTGTTTGTTTG 57.838 26.923 0.00 0.00 0.00 2.93
6417 9714 7.807907 TGTTTGTTTGTTTGTTTGTTTGTTTGT 59.192 25.926 0.00 0.00 0.00 2.83
6418 9715 8.639428 GTTTGTTTGTTTGTTTGTTTGTTTGTT 58.361 25.926 0.00 0.00 0.00 2.83
6497 9794 8.551440 TGTTGTAGTAGAGTACCACCTTATCTA 58.449 37.037 0.00 0.00 0.00 1.98
6612 9968 6.649973 AGCTATCGAGTACTAAATCGCTTCTA 59.350 38.462 0.00 0.00 38.79 2.10
6614 9970 7.802251 GCTATCGAGTACTAAATCGCTTCTAAA 59.198 37.037 0.00 0.00 38.79 1.85
6616 9972 7.909777 TCGAGTACTAAATCGCTTCTAAATG 57.090 36.000 0.00 0.00 38.79 2.32
6617 9973 6.417044 TCGAGTACTAAATCGCTTCTAAATGC 59.583 38.462 0.00 0.00 38.79 3.56
6619 9975 7.096023 CGAGTACTAAATCGCTTCTAAATGCAT 60.096 37.037 0.00 0.00 31.42 3.96
6620 9976 8.077836 AGTACTAAATCGCTTCTAAATGCATC 57.922 34.615 0.00 0.00 0.00 3.91
6622 9978 7.320443 ACTAAATCGCTTCTAAATGCATCAA 57.680 32.000 0.00 0.00 0.00 2.57
6623 9979 7.189512 ACTAAATCGCTTCTAAATGCATCAAC 58.810 34.615 0.00 0.00 0.00 3.18
6624 9980 5.565592 AATCGCTTCTAAATGCATCAACA 57.434 34.783 0.00 0.00 0.00 3.33
6625 9981 5.565592 ATCGCTTCTAAATGCATCAACAA 57.434 34.783 0.00 0.00 0.00 2.83
6626 9982 5.369685 TCGCTTCTAAATGCATCAACAAA 57.630 34.783 0.00 0.00 0.00 2.83
6627 9983 5.767269 TCGCTTCTAAATGCATCAACAAAA 58.233 33.333 0.00 0.00 0.00 2.44
6628 9984 6.212235 TCGCTTCTAAATGCATCAACAAAAA 58.788 32.000 0.00 0.00 0.00 1.94
6632 10080 8.166706 GCTTCTAAATGCATCAACAAAAAGATG 58.833 33.333 0.00 0.00 43.42 2.90
6635 10083 8.030692 TCTAAATGCATCAACAAAAAGATGAGG 58.969 33.333 0.00 0.00 43.28 3.86
6653 10101 9.775854 AAGATGAGGATTATTATCAGTCAACAG 57.224 33.333 0.00 0.00 32.29 3.16
6718 10172 8.807118 TGTATATGAAGGTAACAAAATTGCCAA 58.193 29.630 0.00 0.00 41.41 4.52
6719 10173 9.816354 GTATATGAAGGTAACAAAATTGCCAAT 57.184 29.630 0.00 0.00 41.41 3.16
6720 10174 8.947055 ATATGAAGGTAACAAAATTGCCAATC 57.053 30.769 0.00 0.00 41.41 2.67
6721 10175 5.546526 TGAAGGTAACAAAATTGCCAATCC 58.453 37.500 0.00 0.00 41.41 3.01
6722 10176 5.070981 TGAAGGTAACAAAATTGCCAATCCA 59.929 36.000 0.00 0.00 41.41 3.41
6726 10180 6.262049 AGGTAACAAAATTGCCAATCCAAAAC 59.738 34.615 0.00 0.00 41.41 2.43
6727 10181 6.038714 GGTAACAAAATTGCCAATCCAAAACA 59.961 34.615 0.00 0.00 0.00 2.83
6730 10184 5.826737 ACAAAATTGCCAATCCAAAACATGA 59.173 32.000 0.00 0.00 0.00 3.07
6731 10185 5.945466 AAATTGCCAATCCAAAACATGAC 57.055 34.783 0.00 0.00 0.00 3.06
6732 10186 4.620589 ATTGCCAATCCAAAACATGACA 57.379 36.364 0.00 0.00 0.00 3.58
6733 10187 4.412796 TTGCCAATCCAAAACATGACAA 57.587 36.364 0.00 0.00 0.00 3.18
6734 10188 3.992643 TGCCAATCCAAAACATGACAAG 58.007 40.909 0.00 0.00 0.00 3.16
6735 10189 3.640498 TGCCAATCCAAAACATGACAAGA 59.360 39.130 0.00 0.00 0.00 3.02
6736 10190 4.100653 TGCCAATCCAAAACATGACAAGAA 59.899 37.500 0.00 0.00 0.00 2.52
6737 10191 5.055812 GCCAATCCAAAACATGACAAGAAA 58.944 37.500 0.00 0.00 0.00 2.52
6741 10195 7.280652 CCAATCCAAAACATGACAAGAAAAAGT 59.719 33.333 0.00 0.00 0.00 2.66
6742 10196 9.311916 CAATCCAAAACATGACAAGAAAAAGTA 57.688 29.630 0.00 0.00 0.00 2.24
6744 10198 8.696410 TCCAAAACATGACAAGAAAAAGTAAC 57.304 30.769 0.00 0.00 0.00 2.50
6746 10200 8.930760 CCAAAACATGACAAGAAAAAGTAACAA 58.069 29.630 0.00 0.00 0.00 2.83
6750 10204 8.062065 ACATGACAAGAAAAAGTAACAAGGAA 57.938 30.769 0.00 0.00 0.00 3.36
6752 10206 7.095695 TGACAAGAAAAAGTAACAAGGAAGG 57.904 36.000 0.00 0.00 0.00 3.46
6753 10207 6.887545 TGACAAGAAAAAGTAACAAGGAAGGA 59.112 34.615 0.00 0.00 0.00 3.36
6755 10209 8.129496 ACAAGAAAAAGTAACAAGGAAGGAAA 57.871 30.769 0.00 0.00 0.00 3.13
6757 10211 8.466798 CAAGAAAAAGTAACAAGGAAGGAAAGA 58.533 33.333 0.00 0.00 0.00 2.52
6758 10212 8.589701 AGAAAAAGTAACAAGGAAGGAAAGAA 57.410 30.769 0.00 0.00 0.00 2.52
6760 10214 9.647797 GAAAAAGTAACAAGGAAGGAAAGAAAA 57.352 29.630 0.00 0.00 0.00 2.29
6761 10215 9.653287 AAAAAGTAACAAGGAAGGAAAGAAAAG 57.347 29.630 0.00 0.00 0.00 2.27
6763 10217 8.589701 AAGTAACAAGGAAGGAAAGAAAAGAA 57.410 30.769 0.00 0.00 0.00 2.52
6764 10218 8.226819 AGTAACAAGGAAGGAAAGAAAAGAAG 57.773 34.615 0.00 0.00 0.00 2.85
6765 10219 5.521906 ACAAGGAAGGAAAGAAAAGAAGC 57.478 39.130 0.00 0.00 0.00 3.86
6767 10221 4.086706 AGGAAGGAAAGAAAAGAAGCGA 57.913 40.909 0.00 0.00 0.00 4.93
6768 10222 4.657013 AGGAAGGAAAGAAAAGAAGCGAT 58.343 39.130 0.00 0.00 0.00 4.58
6770 10224 5.536538 AGGAAGGAAAGAAAAGAAGCGATTT 59.463 36.000 0.00 0.00 0.00 2.17
6798 10383 6.414408 TCGTTTTGTTGATGCATTTTTGTT 57.586 29.167 0.00 0.00 0.00 2.83
6799 10384 6.246449 TCGTTTTGTTGATGCATTTTTGTTG 58.754 32.000 0.00 0.00 0.00 3.33
6800 10385 5.451662 CGTTTTGTTGATGCATTTTTGTTGG 59.548 36.000 0.00 0.00 0.00 3.77
6803 10388 4.378774 TGTTGATGCATTTTTGTTGGAGG 58.621 39.130 0.00 0.00 0.00 4.30
6806 10391 3.258872 TGATGCATTTTTGTTGGAGGGAG 59.741 43.478 0.00 0.00 0.00 4.30
6807 10392 1.969923 TGCATTTTTGTTGGAGGGAGG 59.030 47.619 0.00 0.00 0.00 4.30
6808 10393 1.338105 GCATTTTTGTTGGAGGGAGGC 60.338 52.381 0.00 0.00 0.00 4.70
6813 10443 3.787001 GTTGGAGGGAGGCGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
6835 10465 4.074647 GGCGTACAAGTGGCCTTT 57.925 55.556 3.32 0.00 43.52 3.11
6839 10469 1.803334 CGTACAAGTGGCCTTTGCTA 58.197 50.000 17.17 8.68 37.74 3.49
6850 10480 1.618343 GCCTTTGCTACACCAACCAAT 59.382 47.619 0.00 0.00 33.53 3.16
6852 10482 3.157087 CCTTTGCTACACCAACCAATCT 58.843 45.455 0.00 0.00 0.00 2.40
6853 10483 3.573967 CCTTTGCTACACCAACCAATCTT 59.426 43.478 0.00 0.00 0.00 2.40
6854 10484 4.321230 CCTTTGCTACACCAACCAATCTTC 60.321 45.833 0.00 0.00 0.00 2.87
6855 10485 3.788227 TGCTACACCAACCAATCTTCT 57.212 42.857 0.00 0.00 0.00 2.85
6859 10489 4.278419 GCTACACCAACCAATCTTCTTGTT 59.722 41.667 0.00 0.00 0.00 2.83
6860 10490 4.654091 ACACCAACCAATCTTCTTGTTG 57.346 40.909 0.00 0.00 0.00 3.33
6878 10546 1.758514 GGGGACGATCCAGAGAGCA 60.759 63.158 6.41 0.00 38.64 4.26
6879 10547 1.739049 GGGACGATCCAGAGAGCAG 59.261 63.158 6.41 0.00 38.64 4.24
6880 10548 1.067250 GGACGATCCAGAGAGCAGC 59.933 63.158 0.00 0.00 36.28 5.25
6883 10551 1.047596 ACGATCCAGAGAGCAGCCAT 61.048 55.000 0.00 0.00 0.00 4.40
6884 10552 0.600518 CGATCCAGAGAGCAGCCATG 60.601 60.000 0.00 0.00 0.00 3.66
6891 10559 3.912907 GAGCAGCCATGGCCATGC 61.913 66.667 36.08 33.01 43.17 4.06
6920 10600 2.285668 CCCAAGCTCCTCCCTCCA 60.286 66.667 0.00 0.00 0.00 3.86
6927 10607 0.765903 GCTCCTCCCTCCATCCATCA 60.766 60.000 0.00 0.00 0.00 3.07
6932 10612 2.495004 CCTCCCTCCATCCATCATCTCT 60.495 54.545 0.00 0.00 0.00 3.10
6994 10683 1.003355 ACGCCACCACCAGAATCAG 60.003 57.895 0.00 0.00 0.00 2.90
7014 10718 4.074526 GCAGCAGCGACTCCTCCA 62.075 66.667 0.00 0.00 0.00 3.86
7017 10721 3.695606 GCAGCGACTCCTCCACCA 61.696 66.667 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.076863 GTGTTGTAGAGAAGCCGCATT 58.923 47.619 0.00 0.00 0.00 3.56
1 2 1.001974 TGTGTTGTAGAGAAGCCGCAT 59.998 47.619 0.00 0.00 0.00 4.73
6 7 7.422399 TGGTTTTATTTGTGTTGTAGAGAAGC 58.578 34.615 0.00 0.00 0.00 3.86
7 8 9.796120 TTTGGTTTTATTTGTGTTGTAGAGAAG 57.204 29.630 0.00 0.00 0.00 2.85
36 37 1.906824 GTGGTGACTCGAGGGTCCA 60.907 63.158 18.41 17.39 35.54 4.02
38 40 0.391597 TTTGTGGTGACTCGAGGGTC 59.608 55.000 18.41 7.66 36.81 4.46
42 44 1.597663 GTGGTTTTGTGGTGACTCGAG 59.402 52.381 11.84 11.84 0.00 4.04
119 135 8.723942 TTATCTCAGTTCATCTTTTTCCTAGC 57.276 34.615 0.00 0.00 0.00 3.42
122 138 9.972106 AGATTTATCTCAGTTCATCTTTTTCCT 57.028 29.630 0.00 0.00 29.30 3.36
229 248 1.077501 CATGGGCGTCACAATCCCT 60.078 57.895 0.00 0.00 40.69 4.20
243 262 3.455910 TCTGGATAAGGGTCAACTCATGG 59.544 47.826 0.00 0.00 0.00 3.66
345 397 2.454336 ATGAGGGGTCGTGTATGAGA 57.546 50.000 0.00 0.00 0.00 3.27
350 402 5.182570 CGATATTTCTATGAGGGGTCGTGTA 59.817 44.000 0.00 0.00 0.00 2.90
370 423 3.553828 CCTTTCTTAAGGGCCACGATA 57.446 47.619 6.18 0.00 46.10 2.92
372 425 3.948735 CCTTTCTTAAGGGCCACGA 57.051 52.632 6.18 0.00 46.10 4.35
381 434 0.179015 TGTGGTGCCGCCTTTCTTAA 60.179 50.000 0.00 0.00 38.35 1.85
418 471 1.733041 CACGCCTTCGCTTTCTCGA 60.733 57.895 0.00 0.00 39.84 4.04
493 546 2.983592 CCAGGTTTGACCGGTGGC 60.984 66.667 14.63 0.00 44.90 5.01
497 550 1.971695 GAAGGCCAGGTTTGACCGG 60.972 63.158 5.01 0.00 44.90 5.28
498 551 2.325082 CGAAGGCCAGGTTTGACCG 61.325 63.158 5.01 0.00 44.90 4.79
526 579 0.395862 CCGTCTCTTGGCTCCCTCTA 60.396 60.000 0.00 0.00 0.00 2.43
527 580 1.684049 CCGTCTCTTGGCTCCCTCT 60.684 63.158 0.00 0.00 0.00 3.69
528 581 2.726351 CCCGTCTCTTGGCTCCCTC 61.726 68.421 0.00 0.00 0.00 4.30
534 587 0.037975 TTTACGACCCGTCTCTTGGC 60.038 55.000 0.00 0.00 41.54 4.52
539 592 2.428888 ACTGTTTTACGACCCGTCTC 57.571 50.000 0.00 0.00 41.54 3.36
541 594 3.578688 ACATACTGTTTTACGACCCGTC 58.421 45.455 0.00 0.00 41.54 4.79
542 595 3.665745 ACATACTGTTTTACGACCCGT 57.334 42.857 0.00 0.00 44.35 5.28
543 596 3.423907 GCAACATACTGTTTTACGACCCG 60.424 47.826 0.00 0.00 38.77 5.28
545 598 3.423907 CGGCAACATACTGTTTTACGACC 60.424 47.826 0.00 0.00 38.77 4.79
546 599 3.429543 TCGGCAACATACTGTTTTACGAC 59.570 43.478 0.00 0.00 38.77 4.34
547 600 3.651206 TCGGCAACATACTGTTTTACGA 58.349 40.909 0.00 6.43 38.77 3.43
548 601 3.181524 CCTCGGCAACATACTGTTTTACG 60.182 47.826 0.00 0.00 38.77 3.18
551 604 1.539827 GCCTCGGCAACATACTGTTTT 59.460 47.619 2.41 0.00 38.77 2.43
558 611 3.395702 ACCCGCCTCGGCAACATA 61.396 61.111 8.87 0.00 46.86 2.29
587 647 2.904434 TCTTAGGGCTCGAGAAAAGGTT 59.096 45.455 18.75 0.00 0.00 3.50
608 668 2.478894 CACGCACATAAAGGAAACGAGT 59.521 45.455 0.00 0.00 0.00 4.18
742 899 2.501723 TCTTCATCTTCTTCTTCCCCCG 59.498 50.000 0.00 0.00 0.00 5.73
758 924 5.850046 ATTTTCCCCTTCTCTTCTCTTCA 57.150 39.130 0.00 0.00 0.00 3.02
802 973 1.270826 GTTTCCTTCCTCTTGCTTGGC 59.729 52.381 0.00 0.00 0.00 4.52
812 983 1.203440 TCTGGCTAGGGTTTCCTTCCT 60.203 52.381 0.00 0.00 41.56 3.36
813 984 1.210722 CTCTGGCTAGGGTTTCCTTCC 59.789 57.143 0.00 0.00 41.56 3.46
814 985 1.407575 GCTCTGGCTAGGGTTTCCTTC 60.408 57.143 0.00 0.00 44.38 3.46
815 986 0.621082 GCTCTGGCTAGGGTTTCCTT 59.379 55.000 0.00 0.00 44.38 3.36
816 987 2.302019 GCTCTGGCTAGGGTTTCCT 58.698 57.895 0.00 0.00 46.96 3.36
817 988 4.966123 GCTCTGGCTAGGGTTTCC 57.034 61.111 0.00 0.00 35.22 3.13
835 1006 3.824001 ATCTATCTGGCTCTGGCTCTA 57.176 47.619 0.00 0.00 38.73 2.43
845 1016 4.333926 GGTGTTTCTGTCAATCTATCTGGC 59.666 45.833 0.00 0.00 0.00 4.85
846 1017 5.491070 TGGTGTTTCTGTCAATCTATCTGG 58.509 41.667 0.00 0.00 0.00 3.86
848 1019 7.308830 GCTTTTGGTGTTTCTGTCAATCTATCT 60.309 37.037 0.00 0.00 0.00 1.98
849 1020 6.803807 GCTTTTGGTGTTTCTGTCAATCTATC 59.196 38.462 0.00 0.00 0.00 2.08
850 1021 6.568462 CGCTTTTGGTGTTTCTGTCAATCTAT 60.568 38.462 0.00 0.00 0.00 1.98
856 1027 1.202245 GCGCTTTTGGTGTTTCTGTCA 60.202 47.619 0.00 0.00 0.00 3.58
927 1166 2.284995 GAGGGAGGGACTGTGCCT 60.285 66.667 21.59 21.59 42.67 4.75
928 1167 3.403558 GGAGGGAGGGACTGTGCC 61.404 72.222 10.74 10.74 41.55 5.01
931 1170 2.781406 GAGGGAGGGAGGGACTGT 59.219 66.667 0.00 0.00 41.55 3.55
932 1171 2.041405 GGAGGGAGGGAGGGACTG 60.041 72.222 0.00 0.00 41.55 3.51
934 1173 3.369388 AGGGAGGGAGGGAGGGAC 61.369 72.222 0.00 0.00 0.00 4.46
1144 1438 2.022035 TGTCTTGGTAGAGGGGATGGAT 60.022 50.000 0.00 0.00 0.00 3.41
1145 1439 1.364678 TGTCTTGGTAGAGGGGATGGA 59.635 52.381 0.00 0.00 0.00 3.41
1148 1442 1.486211 CGTGTCTTGGTAGAGGGGAT 58.514 55.000 0.00 0.00 0.00 3.85
1150 1444 1.218316 GCGTGTCTTGGTAGAGGGG 59.782 63.158 0.00 0.00 0.00 4.79
1151 1445 0.389948 GTGCGTGTCTTGGTAGAGGG 60.390 60.000 0.00 0.00 0.00 4.30
1152 1446 0.732880 CGTGCGTGTCTTGGTAGAGG 60.733 60.000 0.00 0.00 0.00 3.69
1154 1448 1.372499 GCGTGCGTGTCTTGGTAGA 60.372 57.895 0.00 0.00 0.00 2.59
1155 1449 2.380410 GGCGTGCGTGTCTTGGTAG 61.380 63.158 0.00 0.00 0.00 3.18
1156 1450 2.356553 GGCGTGCGTGTCTTGGTA 60.357 61.111 0.00 0.00 0.00 3.25
1160 1454 2.877974 GAAACGGCGTGCGTGTCTT 61.878 57.895 15.70 0.85 0.00 3.01
1162 1456 3.277742 GAGAAACGGCGTGCGTGTC 62.278 63.158 15.70 6.67 0.00 3.67
1191 1498 3.632643 AATTGATTGGGATTGGCCAAC 57.367 42.857 23.27 14.64 38.95 3.77
1192 1499 4.042560 TCAAAATTGATTGGGATTGGCCAA 59.957 37.500 23.00 23.00 32.81 4.52
1193 1500 3.586174 TCAAAATTGATTGGGATTGGCCA 59.414 39.130 0.00 0.00 32.81 5.36
1216 1551 6.872920 AGTGAATTAAGCAAACCAAACTGAA 58.127 32.000 0.00 0.00 0.00 3.02
1217 1552 6.463995 AGTGAATTAAGCAAACCAAACTGA 57.536 33.333 0.00 0.00 0.00 3.41
1220 1555 6.019075 GGTGAAGTGAATTAAGCAAACCAAAC 60.019 38.462 0.00 0.00 0.00 2.93
1221 1556 6.045955 GGTGAAGTGAATTAAGCAAACCAAA 58.954 36.000 0.00 0.00 0.00 3.28
1225 1560 6.978080 TCTTTGGTGAAGTGAATTAAGCAAAC 59.022 34.615 3.48 0.00 42.33 2.93
1230 1565 7.376072 GTCGTTTCTTTGGTGAAGTGAATTAAG 59.624 37.037 0.00 0.00 36.70 1.85
1233 1568 5.357032 AGTCGTTTCTTTGGTGAAGTGAATT 59.643 36.000 0.00 0.00 36.70 2.17
1253 1609 4.259970 CGGCATGATGAGAGTAAAAAGTCG 60.260 45.833 0.00 0.00 0.00 4.18
1261 1617 1.048160 TGGCCGGCATGATGAGAGTA 61.048 55.000 30.85 0.00 0.00 2.59
1262 1618 2.369633 TGGCCGGCATGATGAGAGT 61.370 57.895 30.85 0.00 0.00 3.24
1263 1619 1.890979 GTGGCCGGCATGATGAGAG 60.891 63.158 30.85 0.00 0.00 3.20
1265 1621 0.602106 CTAGTGGCCGGCATGATGAG 60.602 60.000 30.85 13.16 0.00 2.90
1266 1622 1.447217 CTAGTGGCCGGCATGATGA 59.553 57.895 30.85 6.80 0.00 2.92
1267 1623 1.598962 CCTAGTGGCCGGCATGATG 60.599 63.158 30.85 14.62 0.00 3.07
1306 1670 9.491675 TGAATGTTGCATATCTTTTCATTTTGT 57.508 25.926 0.00 0.00 0.00 2.83
1307 1671 9.967245 CTGAATGTTGCATATCTTTTCATTTTG 57.033 29.630 0.00 0.00 0.00 2.44
1308 1672 8.662141 GCTGAATGTTGCATATCTTTTCATTTT 58.338 29.630 0.00 0.00 0.00 1.82
1318 1682 3.040795 CAAGCGCTGAATGTTGCATATC 58.959 45.455 12.58 0.00 0.00 1.63
1350 1714 4.371855 TCTAATCTAAGGCGTGTCTGTG 57.628 45.455 0.00 0.00 0.00 3.66
1423 1810 5.409712 TCCTATCTGGACCTGATTGATGAT 58.590 41.667 17.98 0.00 40.56 2.45
1562 1949 6.945435 ACAAACAGAGAGACAGAGAGAGATTA 59.055 38.462 0.00 0.00 0.00 1.75
1649 2042 7.555965 AGTTATCAGCAGAACCAAAACTTTTT 58.444 30.769 0.00 0.00 0.00 1.94
1651 2044 6.239036 GGAGTTATCAGCAGAACCAAAACTTT 60.239 38.462 0.00 0.00 0.00 2.66
1652 2045 5.241728 GGAGTTATCAGCAGAACCAAAACTT 59.758 40.000 0.00 0.00 0.00 2.66
1699 2102 3.197265 GCTGGTGTTGTGCTCAAATTTT 58.803 40.909 2.18 0.00 35.20 1.82
1726 2129 2.436115 GGAGGGCCGTAGTTGCAC 60.436 66.667 0.00 0.00 0.00 4.57
1772 2175 2.932614 CAAGGAACGCTGACAGAATAGG 59.067 50.000 6.65 0.00 0.00 2.57
1845 2260 1.896465 GAGTACCTCCAAGAGCACTGT 59.104 52.381 0.00 0.00 0.00 3.55
2171 2598 1.070758 TGTTCAGAAAGAGCGCCTTCT 59.929 47.619 2.29 7.54 33.02 2.85
2186 2613 6.292150 TCATAACAGTGTGGTTGTATGTTCA 58.708 36.000 0.00 0.00 35.77 3.18
2187 2614 6.795098 TCATAACAGTGTGGTTGTATGTTC 57.205 37.500 0.00 0.00 35.77 3.18
2345 3691 2.220133 CACATGCAACAAAAGAGCTTGC 59.780 45.455 0.00 0.00 40.63 4.01
2407 3754 1.122632 TCGGCCCTTCAACTACACCA 61.123 55.000 0.00 0.00 0.00 4.17
2508 3923 5.065474 CGACACAAGTTAGAAAACCAGGAAA 59.935 40.000 0.00 0.00 36.15 3.13
2548 3963 6.732154 CAATACAAGCTACCATTTCTGATGG 58.268 40.000 3.58 3.58 44.54 3.51
2801 4216 6.096001 GCAAGAATATGGATGAAGAGGTTTGT 59.904 38.462 0.00 0.00 0.00 2.83
2958 4382 5.598005 TGATCCAAATTTCCAGACACAAAGT 59.402 36.000 0.00 0.00 0.00 2.66
3123 6052 4.874966 AGATTTAGAACATCTGCACTCTGC 59.125 41.667 0.00 0.00 45.29 4.26
3124 6053 6.675002 GCAAGATTTAGAACATCTGCACTCTG 60.675 42.308 0.00 0.00 31.00 3.35
3125 6054 5.353678 GCAAGATTTAGAACATCTGCACTCT 59.646 40.000 0.00 0.00 31.00 3.24
3126 6055 5.448360 GGCAAGATTTAGAACATCTGCACTC 60.448 44.000 0.00 0.00 31.00 3.51
3127 6056 4.397417 GGCAAGATTTAGAACATCTGCACT 59.603 41.667 0.00 0.00 31.00 4.40
3128 6057 4.397417 AGGCAAGATTTAGAACATCTGCAC 59.603 41.667 0.00 0.00 31.00 4.57
3323 6252 3.634448 ACAAAATGATGGTGAACGGACAA 59.366 39.130 0.00 0.00 0.00 3.18
3326 6255 3.438781 GCTACAAAATGATGGTGAACGGA 59.561 43.478 0.00 0.00 0.00 4.69
3329 6258 6.094603 AGAGATGCTACAAAATGATGGTGAAC 59.905 38.462 0.00 0.00 0.00 3.18
3401 6330 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3402 6331 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
3403 6332 2.315011 CAAACACACACACACACACAC 58.685 47.619 0.00 0.00 0.00 3.82
3404 6333 1.335415 GCAAACACACACACACACACA 60.335 47.619 0.00 0.00 0.00 3.72
3405 6334 1.335415 TGCAAACACACACACACACAC 60.335 47.619 0.00 0.00 0.00 3.82
3406 6335 0.954452 TGCAAACACACACACACACA 59.046 45.000 0.00 0.00 0.00 3.72
3407 6336 1.616620 CTGCAAACACACACACACAC 58.383 50.000 0.00 0.00 0.00 3.82
3408 6337 0.525311 CCTGCAAACACACACACACA 59.475 50.000 0.00 0.00 0.00 3.72
3471 6400 2.213499 CCGCAAAGGATATCAGGTGAC 58.787 52.381 4.83 0.00 45.00 3.67
3649 6578 1.545136 CATGTGCAATGCCCTAACACA 59.455 47.619 1.53 0.00 44.56 3.72
3675 6604 7.339466 AGTGTTTTCAGGTTCACTTGATAACTT 59.661 33.333 19.04 9.92 41.15 2.66
3729 6658 1.225704 GCTTCTGCCCTACCTGCAT 59.774 57.895 0.00 0.00 38.22 3.96
3759 6688 4.219143 TGCTATCGTCGTCGTCATTAAT 57.781 40.909 1.33 0.00 38.33 1.40
3887 6816 7.782897 TTCAGTTCAAGAATAGAGGAGAGAA 57.217 36.000 0.00 0.00 0.00 2.87
3934 6864 3.365868 GCGGATCATGCAACAAAAGTGTA 60.366 43.478 0.00 0.00 36.80 2.90
3937 6867 1.401409 CGCGGATCATGCAACAAAAGT 60.401 47.619 0.00 0.00 0.00 2.66
3939 6869 0.109365 CCGCGGATCATGCAACAAAA 60.109 50.000 24.07 0.00 0.00 2.44
3953 6883 1.860950 CAAACACTATGATCTCCGCGG 59.139 52.381 22.12 22.12 0.00 6.46
4034 6965 5.189928 TCAAAGCTGAACTTGAACCAGTAA 58.810 37.500 0.00 0.00 39.09 2.24
4070 7001 7.860373 TGTGAGTTGCTTTATGATTGTAACAAC 59.140 33.333 0.00 0.00 37.11 3.32
4310 7254 5.157395 TCATATCAGGGAAGGATCATCACA 58.843 41.667 0.00 0.00 0.00 3.58
4437 7390 7.625828 AACAGATTATAAACTACAGGCAACC 57.374 36.000 0.00 0.00 37.17 3.77
4524 7626 5.658634 AGGAGAATACTGTAGATTGTCAGCA 59.341 40.000 3.73 0.00 35.37 4.41
4549 7651 4.510711 TGCAACAATCGATGCAAACAATTT 59.489 33.333 8.90 0.00 46.61 1.82
4550 7652 4.056740 TGCAACAATCGATGCAAACAATT 58.943 34.783 8.90 0.00 46.61 2.32
4568 7670 7.172868 ACATAAAAAGATGATGATGGTGCAA 57.827 32.000 0.00 0.00 0.00 4.08
4647 7753 4.201950 GCTAACCTATTGTCAGCCACATTG 60.202 45.833 0.00 0.00 33.90 2.82
4945 8064 7.268586 TCACTACAAGAGAGCTTCCAATATTC 58.731 38.462 0.00 0.00 30.14 1.75
4951 8070 3.834813 ACATCACTACAAGAGAGCTTCCA 59.165 43.478 0.00 0.00 30.14 3.53
5014 8140 7.037438 GCAACATTTGTGACAGATATGGAAAT 58.963 34.615 7.71 0.00 0.00 2.17
5019 8145 4.142622 ACCGCAACATTTGTGACAGATATG 60.143 41.667 1.01 2.14 43.66 1.78
5020 8146 4.009675 ACCGCAACATTTGTGACAGATAT 58.990 39.130 1.01 0.00 43.66 1.63
5022 8148 2.229792 ACCGCAACATTTGTGACAGAT 58.770 42.857 1.01 0.00 43.66 2.90
5024 8150 3.829886 ATACCGCAACATTTGTGACAG 57.170 42.857 1.01 0.00 43.66 3.51
5026 8152 5.734855 ATCTATACCGCAACATTTGTGAC 57.265 39.130 1.01 0.00 43.66 3.67
5027 8153 6.578944 ACTATCTATACCGCAACATTTGTGA 58.421 36.000 1.01 0.00 43.66 3.58
5029 8155 7.170998 GCTTACTATCTATACCGCAACATTTGT 59.829 37.037 0.00 0.00 0.00 2.83
5030 8156 7.170828 TGCTTACTATCTATACCGCAACATTTG 59.829 37.037 0.00 0.00 0.00 2.32
5032 8158 6.755206 TGCTTACTATCTATACCGCAACATT 58.245 36.000 0.00 0.00 0.00 2.71
5033 8159 6.340962 TGCTTACTATCTATACCGCAACAT 57.659 37.500 0.00 0.00 0.00 2.71
5194 8382 1.710809 AGGTGCCTGTTCCTGGTATTT 59.289 47.619 0.00 0.00 32.29 1.40
5195 8383 1.372501 AGGTGCCTGTTCCTGGTATT 58.627 50.000 0.00 0.00 32.29 1.89
5196 8384 1.282157 GAAGGTGCCTGTTCCTGGTAT 59.718 52.381 0.00 0.00 33.97 2.73
5197 8385 0.690762 GAAGGTGCCTGTTCCTGGTA 59.309 55.000 0.00 0.00 33.97 3.25
5198 8386 1.456287 GAAGGTGCCTGTTCCTGGT 59.544 57.895 0.00 0.00 33.97 4.00
5199 8387 1.303643 GGAAGGTGCCTGTTCCTGG 60.304 63.158 2.48 0.00 39.42 4.45
5200 8388 0.038744 ATGGAAGGTGCCTGTTCCTG 59.961 55.000 9.61 0.00 42.51 3.86
5201 8389 0.329596 GATGGAAGGTGCCTGTTCCT 59.670 55.000 9.61 0.00 42.51 3.36
5202 8390 0.038166 TGATGGAAGGTGCCTGTTCC 59.962 55.000 2.70 2.70 42.39 3.62
5203 8391 1.909700 TTGATGGAAGGTGCCTGTTC 58.090 50.000 0.00 0.00 0.00 3.18
5204 8392 2.242043 CTTTGATGGAAGGTGCCTGTT 58.758 47.619 0.00 0.00 0.00 3.16
5205 8393 1.145738 ACTTTGATGGAAGGTGCCTGT 59.854 47.619 0.00 0.00 0.00 4.00
5206 8394 1.542915 CACTTTGATGGAAGGTGCCTG 59.457 52.381 0.00 0.00 35.13 4.85
5207 8395 1.145738 ACACTTTGATGGAAGGTGCCT 59.854 47.619 0.00 0.00 43.76 4.75
5208 8396 1.541588 GACACTTTGATGGAAGGTGCC 59.458 52.381 0.00 0.00 43.76 5.01
5209 8397 1.541588 GGACACTTTGATGGAAGGTGC 59.458 52.381 0.00 0.00 43.76 5.01
5210 8398 2.816087 CAGGACACTTTGATGGAAGGTG 59.184 50.000 0.00 0.00 45.09 4.00
5211 8399 2.815589 GCAGGACACTTTGATGGAAGGT 60.816 50.000 0.00 0.00 0.00 3.50
5212 8400 1.815003 GCAGGACACTTTGATGGAAGG 59.185 52.381 0.00 0.00 0.00 3.46
5213 8401 2.507484 TGCAGGACACTTTGATGGAAG 58.493 47.619 0.00 0.00 0.00 3.46
5214 8402 2.655090 TGCAGGACACTTTGATGGAA 57.345 45.000 0.00 0.00 0.00 3.53
5215 8403 2.885135 ATGCAGGACACTTTGATGGA 57.115 45.000 0.00 0.00 0.00 3.41
5216 8404 2.947652 CCTATGCAGGACACTTTGATGG 59.052 50.000 0.00 0.00 45.91 3.51
5217 8405 2.357009 GCCTATGCAGGACACTTTGATG 59.643 50.000 0.00 0.00 45.91 3.07
5218 8406 2.025981 TGCCTATGCAGGACACTTTGAT 60.026 45.455 0.00 0.00 45.91 2.57
5219 8407 1.350684 TGCCTATGCAGGACACTTTGA 59.649 47.619 0.00 0.00 45.91 2.69
5220 8408 1.825090 TGCCTATGCAGGACACTTTG 58.175 50.000 0.00 0.00 45.91 2.77
5231 8419 6.654161 AGAGAAAATATGACAGATGCCTATGC 59.346 38.462 0.00 0.00 38.26 3.14
5232 8420 7.361031 GCAGAGAAAATATGACAGATGCCTATG 60.361 40.741 0.00 0.00 0.00 2.23
5233 8421 6.654161 GCAGAGAAAATATGACAGATGCCTAT 59.346 38.462 0.00 0.00 0.00 2.57
5234 8422 5.994054 GCAGAGAAAATATGACAGATGCCTA 59.006 40.000 0.00 0.00 0.00 3.93
5235 8423 4.820716 GCAGAGAAAATATGACAGATGCCT 59.179 41.667 0.00 0.00 0.00 4.75
5236 8424 4.820716 AGCAGAGAAAATATGACAGATGCC 59.179 41.667 0.00 0.00 0.00 4.40
5237 8425 6.374565 AAGCAGAGAAAATATGACAGATGC 57.625 37.500 0.00 0.00 0.00 3.91
5238 8426 7.496920 TGGTAAGCAGAGAAAATATGACAGATG 59.503 37.037 0.00 0.00 0.00 2.90
5239 8427 7.568349 TGGTAAGCAGAGAAAATATGACAGAT 58.432 34.615 0.00 0.00 0.00 2.90
5240 8428 6.946340 TGGTAAGCAGAGAAAATATGACAGA 58.054 36.000 0.00 0.00 0.00 3.41
5241 8429 7.044181 TCTGGTAAGCAGAGAAAATATGACAG 58.956 38.462 0.00 0.00 0.00 3.51
5242 8430 6.946340 TCTGGTAAGCAGAGAAAATATGACA 58.054 36.000 0.00 0.00 0.00 3.58
5243 8431 8.341173 CAATCTGGTAAGCAGAGAAAATATGAC 58.659 37.037 0.00 0.00 31.61 3.06
5244 8432 8.049117 ACAATCTGGTAAGCAGAGAAAATATGA 58.951 33.333 0.00 0.00 31.61 2.15
5245 8433 8.218338 ACAATCTGGTAAGCAGAGAAAATATG 57.782 34.615 0.00 0.00 31.61 1.78
5634 8851 2.798499 CGTGCGGAAGGAAATATCGAGT 60.798 50.000 0.00 0.00 0.00 4.18
5730 8987 7.019418 ACAACGTTTTACAAAGTCAAACTCTC 58.981 34.615 0.00 0.00 30.37 3.20
5733 8990 8.291740 AGTTACAACGTTTTACAAAGTCAAACT 58.708 29.630 0.00 0.00 30.37 2.66
5734 8991 8.360132 CAGTTACAACGTTTTACAAAGTCAAAC 58.640 33.333 0.00 0.00 0.00 2.93
5735 8992 7.060864 GCAGTTACAACGTTTTACAAAGTCAAA 59.939 33.333 0.00 0.00 0.00 2.69
5761 9018 2.595463 CACCACCTGCCACCACAG 60.595 66.667 0.00 0.00 37.42 3.66
5966 9223 1.509923 GAGGGTTCAAGCATGCTGC 59.490 57.895 23.48 11.79 45.46 5.25
5967 9224 1.318158 GGGAGGGTTCAAGCATGCTG 61.318 60.000 23.48 15.40 0.00 4.41
5968 9225 1.000396 GGGAGGGTTCAAGCATGCT 60.000 57.895 16.30 16.30 0.00 3.79
6003 9264 4.708726 ATCCATAACAACTTGCTGCTTC 57.291 40.909 0.00 0.00 0.00 3.86
6028 9289 2.130395 GTCAGCAAAAGCAAAAGCTCC 58.870 47.619 0.00 0.00 34.61 4.70
6040 9301 1.400142 CACACAAACTCGGTCAGCAAA 59.600 47.619 0.00 0.00 0.00 3.68
6041 9302 1.013596 CACACAAACTCGGTCAGCAA 58.986 50.000 0.00 0.00 0.00 3.91
6042 9303 0.813610 CCACACAAACTCGGTCAGCA 60.814 55.000 0.00 0.00 0.00 4.41
6043 9304 1.941812 CCACACAAACTCGGTCAGC 59.058 57.895 0.00 0.00 0.00 4.26
6044 9305 0.813610 TGCCACACAAACTCGGTCAG 60.814 55.000 0.00 0.00 0.00 3.51
6045 9306 0.393132 TTGCCACACAAACTCGGTCA 60.393 50.000 0.00 0.00 34.56 4.02
6046 9307 0.951558 ATTGCCACACAAACTCGGTC 59.048 50.000 0.00 0.00 42.86 4.79
6047 9308 0.667993 CATTGCCACACAAACTCGGT 59.332 50.000 0.00 0.00 42.86 4.69
6048 9309 0.039256 CCATTGCCACACAAACTCGG 60.039 55.000 0.00 0.00 42.86 4.63
6049 9310 0.039256 CCCATTGCCACACAAACTCG 60.039 55.000 0.00 0.00 42.86 4.18
6050 9311 1.327303 TCCCATTGCCACACAAACTC 58.673 50.000 0.00 0.00 42.86 3.01
6051 9312 1.619827 CATCCCATTGCCACACAAACT 59.380 47.619 0.00 0.00 42.86 2.66
6052 9313 1.617850 TCATCCCATTGCCACACAAAC 59.382 47.619 0.00 0.00 42.86 2.93
6053 9314 2.006805 TCATCCCATTGCCACACAAA 57.993 45.000 0.00 0.00 42.86 2.83
6054 9315 2.006805 TTCATCCCATTGCCACACAA 57.993 45.000 0.00 0.00 44.01 3.33
6055 9316 2.006805 TTTCATCCCATTGCCACACA 57.993 45.000 0.00 0.00 0.00 3.72
6056 9317 3.264104 CATTTTCATCCCATTGCCACAC 58.736 45.455 0.00 0.00 0.00 3.82
6057 9318 2.905085 ACATTTTCATCCCATTGCCACA 59.095 40.909 0.00 0.00 0.00 4.17
6058 9319 3.615224 ACATTTTCATCCCATTGCCAC 57.385 42.857 0.00 0.00 0.00 5.01
6059 9320 3.869140 GCAACATTTTCATCCCATTGCCA 60.869 43.478 0.00 0.00 35.95 4.92
6060 9321 2.679336 GCAACATTTTCATCCCATTGCC 59.321 45.455 0.00 0.00 35.95 4.52
6061 9322 3.336468 TGCAACATTTTCATCCCATTGC 58.664 40.909 0.00 0.00 40.99 3.56
6062 9323 3.936453 CCTGCAACATTTTCATCCCATTG 59.064 43.478 0.00 0.00 0.00 2.82
6063 9324 3.839490 TCCTGCAACATTTTCATCCCATT 59.161 39.130 0.00 0.00 0.00 3.16
6064 9325 3.196254 GTCCTGCAACATTTTCATCCCAT 59.804 43.478 0.00 0.00 0.00 4.00
6068 9329 4.682860 CACTTGTCCTGCAACATTTTCATC 59.317 41.667 0.00 0.00 32.90 2.92
6140 9401 2.432510 GCTATGGCTATGCTACCCCTAG 59.567 54.545 0.00 0.00 35.22 3.02
6144 9405 0.984230 TGGCTATGGCTATGCTACCC 59.016 55.000 0.00 0.00 38.73 3.69
6297 9590 2.825836 CCACCAATGCTCGGCTCC 60.826 66.667 0.00 0.00 0.00 4.70
6298 9591 2.045926 ACCACCAATGCTCGGCTC 60.046 61.111 0.00 0.00 0.00 4.70
6299 9592 2.045926 GACCACCAATGCTCGGCT 60.046 61.111 0.00 0.00 0.00 5.52
6300 9593 2.359850 TGACCACCAATGCTCGGC 60.360 61.111 0.00 0.00 0.00 5.54
6301 9594 2.401766 GCTGACCACCAATGCTCGG 61.402 63.158 0.00 0.00 0.00 4.63
6302 9595 1.642037 CTGCTGACCACCAATGCTCG 61.642 60.000 0.00 0.00 0.00 5.03
6303 9596 1.930908 GCTGCTGACCACCAATGCTC 61.931 60.000 0.00 0.00 0.00 4.26
6304 9597 1.975407 GCTGCTGACCACCAATGCT 60.975 57.895 0.00 0.00 0.00 3.79
6305 9598 2.209064 CTGCTGCTGACCACCAATGC 62.209 60.000 0.00 0.00 0.00 3.56
6306 9599 1.592400 CCTGCTGCTGACCACCAATG 61.592 60.000 8.20 0.00 0.00 2.82
6307 9600 1.303888 CCTGCTGCTGACCACCAAT 60.304 57.895 8.20 0.00 0.00 3.16
6308 9601 2.113774 CCTGCTGCTGACCACCAA 59.886 61.111 8.20 0.00 0.00 3.67
6388 9685 8.162906 ACAAACAAACAAACAAACAAACAAAC 57.837 26.923 0.00 0.00 0.00 2.93
6389 9686 8.742554 AACAAACAAACAAACAAACAAACAAA 57.257 23.077 0.00 0.00 0.00 2.83
6392 9689 8.162906 ACAAACAAACAAACAAACAAACAAAC 57.837 26.923 0.00 0.00 0.00 2.93
6393 9690 8.742554 AACAAACAAACAAACAAACAAACAAA 57.257 23.077 0.00 0.00 0.00 2.83
6396 9693 7.484959 TCCAAACAAACAAACAAACAAACAAAC 59.515 29.630 0.00 0.00 0.00 2.93
6398 9695 7.083875 TCCAAACAAACAAACAAACAAACAA 57.916 28.000 0.00 0.00 0.00 2.83
6400 9697 6.580416 CCATCCAAACAAACAAACAAACAAAC 59.420 34.615 0.00 0.00 0.00 2.93
6403 9700 5.180117 CACCATCCAAACAAACAAACAAACA 59.820 36.000 0.00 0.00 0.00 2.83
6405 9702 5.551233 TCACCATCCAAACAAACAAACAAA 58.449 33.333 0.00 0.00 0.00 2.83
6406 9703 5.152623 TCACCATCCAAACAAACAAACAA 57.847 34.783 0.00 0.00 0.00 2.83
6407 9704 4.808414 TCACCATCCAAACAAACAAACA 57.192 36.364 0.00 0.00 0.00 2.83
6408 9705 5.814705 TCATTCACCATCCAAACAAACAAAC 59.185 36.000 0.00 0.00 0.00 2.93
6409 9706 5.982356 TCATTCACCATCCAAACAAACAAA 58.018 33.333 0.00 0.00 0.00 2.83
6410 9707 5.604758 TCATTCACCATCCAAACAAACAA 57.395 34.783 0.00 0.00 0.00 2.83
6411 9708 5.604758 TTCATTCACCATCCAAACAAACA 57.395 34.783 0.00 0.00 0.00 2.83
6412 9709 6.222389 TCATTCATTCACCATCCAAACAAAC 58.778 36.000 0.00 0.00 0.00 2.93
6413 9710 6.416631 TCATTCATTCACCATCCAAACAAA 57.583 33.333 0.00 0.00 0.00 2.83
6414 9711 6.416631 TTCATTCATTCACCATCCAAACAA 57.583 33.333 0.00 0.00 0.00 2.83
6415 9712 6.210984 TCATTCATTCATTCACCATCCAAACA 59.789 34.615 0.00 0.00 0.00 2.83
6416 9713 6.632909 TCATTCATTCATTCACCATCCAAAC 58.367 36.000 0.00 0.00 0.00 2.93
6417 9714 6.854091 TCATTCATTCATTCACCATCCAAA 57.146 33.333 0.00 0.00 0.00 3.28
6418 9715 6.854091 TTCATTCATTCATTCACCATCCAA 57.146 33.333 0.00 0.00 0.00 3.53
6478 9775 6.546772 AGCAGTTAGATAAGGTGGTACTCTAC 59.453 42.308 0.00 0.00 0.00 2.59
6479 9776 6.670617 AGCAGTTAGATAAGGTGGTACTCTA 58.329 40.000 0.00 0.00 0.00 2.43
6480 9777 5.520751 AGCAGTTAGATAAGGTGGTACTCT 58.479 41.667 0.00 0.00 0.00 3.24
6481 9778 5.855740 AGCAGTTAGATAAGGTGGTACTC 57.144 43.478 0.00 0.00 0.00 2.59
6486 9783 5.854010 TGACTAGCAGTTAGATAAGGTGG 57.146 43.478 0.00 0.00 33.39 4.61
6489 9786 7.890515 TCATCATGACTAGCAGTTAGATAAGG 58.109 38.462 0.00 0.00 33.39 2.69
6497 9794 8.155510 ACATAATCATCATCATGACTAGCAGTT 58.844 33.333 0.00 0.00 42.05 3.16
6588 9894 5.691815 AGAAGCGATTTAGTACTCGATAGC 58.308 41.667 0.00 7.00 37.05 2.97
6589 9895 9.828852 ATTTAGAAGCGATTTAGTACTCGATAG 57.171 33.333 0.00 0.00 37.05 2.08
6593 9899 6.198403 TGCATTTAGAAGCGATTTAGTACTCG 59.802 38.462 0.00 0.00 37.92 4.18
6612 9968 6.761312 TCCTCATCTTTTTGTTGATGCATTT 58.239 32.000 0.00 0.00 39.69 2.32
6614 9970 5.988310 TCCTCATCTTTTTGTTGATGCAT 57.012 34.783 0.00 0.00 39.69 3.96
6616 9972 8.937634 AATAATCCTCATCTTTTTGTTGATGC 57.062 30.769 0.00 0.00 39.69 3.91
6627 9983 9.775854 CTGTTGACTGATAATAATCCTCATCTT 57.224 33.333 0.00 0.00 0.00 2.40
6628 9984 9.152327 TCTGTTGACTGATAATAATCCTCATCT 57.848 33.333 0.00 0.00 0.00 2.90
6632 10080 8.948631 TTGTCTGTTGACTGATAATAATCCTC 57.051 34.615 0.00 0.00 43.29 3.71
6691 10139 8.976353 TGGCAATTTTGTTACCTTCATATACAT 58.024 29.630 0.00 0.00 0.00 2.29
6693 10141 9.816354 ATTGGCAATTTTGTTACCTTCATATAC 57.184 29.630 6.96 0.00 0.00 1.47
6699 10153 5.546526 TGGATTGGCAATTTTGTTACCTTC 58.453 37.500 14.93 0.00 0.00 3.46
6703 10157 7.020914 TGTTTTGGATTGGCAATTTTGTTAC 57.979 32.000 14.93 9.23 0.00 2.50
6707 10161 6.144175 GTCATGTTTTGGATTGGCAATTTTG 58.856 36.000 14.93 4.23 0.00 2.44
6714 10168 4.255833 TCTTGTCATGTTTTGGATTGGC 57.744 40.909 0.00 0.00 0.00 4.52
6715 10169 7.280652 ACTTTTTCTTGTCATGTTTTGGATTGG 59.719 33.333 0.00 0.00 0.00 3.16
6716 10170 8.200364 ACTTTTTCTTGTCATGTTTTGGATTG 57.800 30.769 0.00 0.00 0.00 2.67
6718 10172 9.313118 GTTACTTTTTCTTGTCATGTTTTGGAT 57.687 29.630 0.00 0.00 0.00 3.41
6719 10173 8.307483 TGTTACTTTTTCTTGTCATGTTTTGGA 58.693 29.630 0.00 0.00 0.00 3.53
6720 10174 8.472683 TGTTACTTTTTCTTGTCATGTTTTGG 57.527 30.769 0.00 0.00 0.00 3.28
6721 10175 9.956797 CTTGTTACTTTTTCTTGTCATGTTTTG 57.043 29.630 0.00 0.00 0.00 2.44
6722 10176 9.150348 CCTTGTTACTTTTTCTTGTCATGTTTT 57.850 29.630 0.00 0.00 0.00 2.43
6726 10180 7.649306 CCTTCCTTGTTACTTTTTCTTGTCATG 59.351 37.037 0.00 0.00 0.00 3.07
6727 10181 7.559897 TCCTTCCTTGTTACTTTTTCTTGTCAT 59.440 33.333 0.00 0.00 0.00 3.06
6730 10184 7.712204 TTCCTTCCTTGTTACTTTTTCTTGT 57.288 32.000 0.00 0.00 0.00 3.16
6731 10185 8.466798 TCTTTCCTTCCTTGTTACTTTTTCTTG 58.533 33.333 0.00 0.00 0.00 3.02
6732 10186 8.589701 TCTTTCCTTCCTTGTTACTTTTTCTT 57.410 30.769 0.00 0.00 0.00 2.52
6733 10187 8.589701 TTCTTTCCTTCCTTGTTACTTTTTCT 57.410 30.769 0.00 0.00 0.00 2.52
6734 10188 9.647797 TTTTCTTTCCTTCCTTGTTACTTTTTC 57.352 29.630 0.00 0.00 0.00 2.29
6735 10189 9.653287 CTTTTCTTTCCTTCCTTGTTACTTTTT 57.347 29.630 0.00 0.00 0.00 1.94
6736 10190 9.031537 TCTTTTCTTTCCTTCCTTGTTACTTTT 57.968 29.630 0.00 0.00 0.00 2.27
6737 10191 8.589701 TCTTTTCTTTCCTTCCTTGTTACTTT 57.410 30.769 0.00 0.00 0.00 2.66
6741 10195 6.238648 CGCTTCTTTTCTTTCCTTCCTTGTTA 60.239 38.462 0.00 0.00 0.00 2.41
6742 10196 5.450550 CGCTTCTTTTCTTTCCTTCCTTGTT 60.451 40.000 0.00 0.00 0.00 2.83
6744 10198 4.275936 TCGCTTCTTTTCTTTCCTTCCTTG 59.724 41.667 0.00 0.00 0.00 3.61
6746 10200 4.086706 TCGCTTCTTTTCTTTCCTTCCT 57.913 40.909 0.00 0.00 0.00 3.36
6750 10204 6.149129 ACAAAATCGCTTCTTTTCTTTCCT 57.851 33.333 0.00 0.00 0.00 3.36
6752 10206 7.051408 CGAAACAAAATCGCTTCTTTTCTTTC 58.949 34.615 0.00 0.00 32.14 2.62
6753 10207 6.530181 ACGAAACAAAATCGCTTCTTTTCTTT 59.470 30.769 0.00 0.00 43.88 2.52
6755 10209 5.578776 ACGAAACAAAATCGCTTCTTTTCT 58.421 33.333 0.00 0.00 43.88 2.52
6757 10211 6.641176 AAACGAAACAAAATCGCTTCTTTT 57.359 29.167 0.00 0.00 43.88 2.27
6758 10212 6.090223 ACAAAACGAAACAAAATCGCTTCTTT 59.910 30.769 0.00 0.00 43.88 2.52
6760 10214 5.099575 ACAAAACGAAACAAAATCGCTTCT 58.900 33.333 0.00 0.00 43.88 2.85
6761 10215 5.369947 ACAAAACGAAACAAAATCGCTTC 57.630 34.783 0.00 0.00 43.88 3.86
6763 10217 4.859798 TCAACAAAACGAAACAAAATCGCT 59.140 33.333 0.00 0.00 43.88 4.93
6764 10218 5.119815 TCAACAAAACGAAACAAAATCGC 57.880 34.783 0.00 0.00 43.88 4.58
6765 10219 5.611200 GCATCAACAAAACGAAACAAAATCG 59.389 36.000 0.00 0.00 45.47 3.34
6767 10221 6.414408 TGCATCAACAAAACGAAACAAAAT 57.586 29.167 0.00 0.00 0.00 1.82
6768 10222 5.845985 TGCATCAACAAAACGAAACAAAA 57.154 30.435 0.00 0.00 0.00 2.44
6770 10224 6.414408 AAATGCATCAACAAAACGAAACAA 57.586 29.167 0.00 0.00 0.00 2.83
6776 10361 5.451662 CCAACAAAAATGCATCAACAAAACG 59.548 36.000 0.00 0.00 0.00 3.60
6813 10443 2.813908 CCACTTGTACGCCTCCGC 60.814 66.667 0.00 0.00 38.22 5.54
6835 10465 3.788227 AGAAGATTGGTTGGTGTAGCA 57.212 42.857 0.00 0.00 0.00 3.49
6839 10469 4.654091 CAACAAGAAGATTGGTTGGTGT 57.346 40.909 0.00 0.00 37.54 4.16
6850 10480 1.278127 GGATCGTCCCCAACAAGAAGA 59.722 52.381 0.00 0.00 0.00 2.87
6852 10482 1.003118 CTGGATCGTCCCCAACAAGAA 59.997 52.381 2.23 0.00 35.03 2.52
6853 10483 0.613260 CTGGATCGTCCCCAACAAGA 59.387 55.000 2.23 0.00 35.03 3.02
6854 10484 0.613260 TCTGGATCGTCCCCAACAAG 59.387 55.000 2.23 0.00 35.03 3.16
6855 10485 0.613260 CTCTGGATCGTCCCCAACAA 59.387 55.000 2.23 0.00 35.03 2.83
6859 10489 1.758514 GCTCTCTGGATCGTCCCCA 60.759 63.158 2.23 0.00 35.03 4.96
6860 10490 1.743321 CTGCTCTCTGGATCGTCCCC 61.743 65.000 2.23 0.00 35.03 4.81
6861 10491 1.739049 CTGCTCTCTGGATCGTCCC 59.261 63.158 2.23 0.00 35.03 4.46
6862 10492 1.067250 GCTGCTCTCTGGATCGTCC 59.933 63.158 0.00 0.00 36.96 4.79
6863 10493 1.067250 GGCTGCTCTCTGGATCGTC 59.933 63.158 0.00 0.00 0.00 4.20
6864 10494 1.047596 ATGGCTGCTCTCTGGATCGT 61.048 55.000 0.00 0.00 0.00 3.73
6920 10600 2.035193 CCGTCGTTGAGAGATGATGGAT 59.965 50.000 0.06 0.00 42.06 3.41
6927 10607 0.966920 AACCACCGTCGTTGAGAGAT 59.033 50.000 0.00 0.00 0.00 2.75
6932 10612 1.887854 TGAGATAACCACCGTCGTTGA 59.112 47.619 0.00 0.00 0.00 3.18
6968 10657 4.250305 GTGGTGGCGTGGTGGACT 62.250 66.667 0.00 0.00 0.00 3.85
6994 10683 1.809209 GAGGAGTCGCTGCTGCTTC 60.809 63.158 14.03 8.26 37.29 3.86
7005 10694 1.841556 TGGTGGTGGTGGAGGAGTC 60.842 63.158 0.00 0.00 0.00 3.36
7006 10695 2.147387 GTGGTGGTGGTGGAGGAGT 61.147 63.158 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.