Multiple sequence alignment - TraesCS5D01G000700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G000700 chr5D 100.000 2732 0 0 1 2732 877447 874716 0.000000e+00 5046.0
1 TraesCS5D01G000700 chr5D 97.742 2170 48 1 564 2732 527195194 527193025 0.000000e+00 3735.0
2 TraesCS5D01G000700 chr5D 97.697 2171 46 2 563 2732 220701965 220699798 0.000000e+00 3729.0
3 TraesCS5D01G000700 chr5D 97.292 2179 57 1 554 2732 77002195 77004371 0.000000e+00 3696.0
4 TraesCS5D01G000700 chr5D 96.289 539 20 0 571 1109 490432080 490432618 0.000000e+00 885.0
5 TraesCS5D01G000700 chr5D 98.022 455 4 4 1 455 404941134 404940685 0.000000e+00 785.0
6 TraesCS5D01G000700 chr5D 97.802 455 8 2 1 455 73901397 73901849 0.000000e+00 784.0
7 TraesCS5D01G000700 chr5D 97.802 455 7 2 1 455 426562371 426562822 0.000000e+00 782.0
8 TraesCS5D01G000700 chr4D 97.242 2284 48 8 456 2732 442428090 442425815 0.000000e+00 3855.0
9 TraesCS5D01G000700 chr4D 97.697 2171 49 1 563 2732 17337644 17335474 0.000000e+00 3731.0
10 TraesCS5D01G000700 chr4D 95.848 2288 56 18 462 2732 282074554 282076819 0.000000e+00 3663.0
11 TraesCS5D01G000700 chr4D 97.807 456 4 5 1 455 441577122 441576672 0.000000e+00 782.0
12 TraesCS5D01G000700 chr4D 95.161 62 3 0 456 517 472678060 472677999 6.230000e-17 99.0
13 TraesCS5D01G000700 chr3D 97.365 2277 35 4 456 2732 330284966 330282715 0.000000e+00 3849.0
14 TraesCS5D01G000700 chr3D 97.741 2169 46 1 564 2732 199108305 199106140 0.000000e+00 3731.0
15 TraesCS5D01G000700 chr1D 98.065 2170 36 3 564 2732 103258745 103256581 0.000000e+00 3770.0
16 TraesCS5D01G000700 chr1D 96.774 62 2 0 456 517 103258823 103258762 1.340000e-18 104.0
17 TraesCS5D01G000700 chr1D 94.828 58 3 0 460 517 44620743 44620686 1.040000e-14 91.6
18 TraesCS5D01G000700 chr1D 100.000 44 0 0 456 499 2268243 2268200 6.270000e-12 82.4
19 TraesCS5D01G000700 chr2D 97.650 2170 48 2 564 2732 421811243 421809076 0.000000e+00 3722.0
20 TraesCS5D01G000700 chr2D 96.774 62 2 0 456 517 421811321 421811260 1.340000e-18 104.0
21 TraesCS5D01G000700 chr7D 98.246 456 4 4 1 455 324830122 324829670 0.000000e+00 795.0
22 TraesCS5D01G000700 chr7D 98.022 455 5 4 1 455 171500983 171501433 0.000000e+00 787.0
23 TraesCS5D01G000700 chr7D 98.022 455 5 3 1 455 238358610 238358160 0.000000e+00 787.0
24 TraesCS5D01G000700 chr6D 97.802 455 6 4 1 455 128800625 128801075 0.000000e+00 782.0
25 TraesCS5D01G000700 chr6D 97.807 456 5 5 1 455 322020398 322019947 0.000000e+00 782.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G000700 chr5D 874716 877447 2731 True 5046 5046 100.0000 1 2732 1 chr5D.!!$R1 2731
1 TraesCS5D01G000700 chr5D 527193025 527195194 2169 True 3735 3735 97.7420 564 2732 1 chr5D.!!$R4 2168
2 TraesCS5D01G000700 chr5D 220699798 220701965 2167 True 3729 3729 97.6970 563 2732 1 chr5D.!!$R2 2169
3 TraesCS5D01G000700 chr5D 77002195 77004371 2176 False 3696 3696 97.2920 554 2732 1 chr5D.!!$F2 2178
4 TraesCS5D01G000700 chr5D 490432080 490432618 538 False 885 885 96.2890 571 1109 1 chr5D.!!$F4 538
5 TraesCS5D01G000700 chr4D 442425815 442428090 2275 True 3855 3855 97.2420 456 2732 1 chr4D.!!$R3 2276
6 TraesCS5D01G000700 chr4D 17335474 17337644 2170 True 3731 3731 97.6970 563 2732 1 chr4D.!!$R1 2169
7 TraesCS5D01G000700 chr4D 282074554 282076819 2265 False 3663 3663 95.8480 462 2732 1 chr4D.!!$F1 2270
8 TraesCS5D01G000700 chr3D 330282715 330284966 2251 True 3849 3849 97.3650 456 2732 1 chr3D.!!$R2 2276
9 TraesCS5D01G000700 chr3D 199106140 199108305 2165 True 3731 3731 97.7410 564 2732 1 chr3D.!!$R1 2168
10 TraesCS5D01G000700 chr1D 103256581 103258823 2242 True 1937 3770 97.4195 456 2732 2 chr1D.!!$R3 2276
11 TraesCS5D01G000700 chr2D 421809076 421811321 2245 True 1913 3722 97.2120 456 2732 2 chr2D.!!$R1 2276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.110486 GCAAGGACCTCCAAGACCAA 59.890 55.000 0.0 0.0 38.89 3.67 F
303 304 1.202940 AGGACCTCCAAGACCAAAAGC 60.203 52.381 0.0 0.0 38.89 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 1134 0.462759 GGCGCCAGATAGCAGAACTT 60.463 55.0 24.8 0.0 34.54 2.66 R
2218 2254 0.898789 GACCCCAGAAGACCTCGACA 60.899 60.0 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 9.726438 ATAATTATATGGAGAGGTACAACTTGC 57.274 33.333 0.00 0.00 0.00 4.01
86 87 6.808321 TTATATGGAGAGGTACAACTTGCT 57.192 37.500 0.00 0.00 0.00 3.91
87 88 2.839486 TGGAGAGGTACAACTTGCTG 57.161 50.000 0.00 0.00 0.00 4.41
88 89 1.347707 TGGAGAGGTACAACTTGCTGG 59.652 52.381 0.00 0.00 0.00 4.85
89 90 1.623811 GGAGAGGTACAACTTGCTGGA 59.376 52.381 0.00 0.00 0.00 3.86
90 91 2.237392 GGAGAGGTACAACTTGCTGGAT 59.763 50.000 0.00 0.00 0.00 3.41
91 92 3.307762 GGAGAGGTACAACTTGCTGGATT 60.308 47.826 0.00 0.00 0.00 3.01
92 93 4.327680 GAGAGGTACAACTTGCTGGATTT 58.672 43.478 0.00 0.00 0.00 2.17
93 94 4.074970 AGAGGTACAACTTGCTGGATTTG 58.925 43.478 0.00 0.00 0.00 2.32
94 95 4.072131 GAGGTACAACTTGCTGGATTTGA 58.928 43.478 0.00 0.00 0.00 2.69
95 96 4.666512 AGGTACAACTTGCTGGATTTGAT 58.333 39.130 0.00 0.00 0.00 2.57
96 97 4.460382 AGGTACAACTTGCTGGATTTGATG 59.540 41.667 0.00 0.00 0.00 3.07
97 98 3.308438 ACAACTTGCTGGATTTGATGC 57.692 42.857 0.00 0.00 0.00 3.91
98 99 2.629137 ACAACTTGCTGGATTTGATGCA 59.371 40.909 0.00 0.00 0.00 3.96
99 100 3.069872 ACAACTTGCTGGATTTGATGCAA 59.930 39.130 0.00 0.00 42.16 4.08
100 101 4.059511 CAACTTGCTGGATTTGATGCAAA 58.940 39.130 0.00 0.00 43.45 3.68
101 102 4.339872 ACTTGCTGGATTTGATGCAAAA 57.660 36.364 0.00 0.00 43.45 2.44
102 103 4.060205 ACTTGCTGGATTTGATGCAAAAC 58.940 39.130 0.00 0.00 43.45 2.43
103 104 3.747854 TGCTGGATTTGATGCAAAACA 57.252 38.095 0.00 0.00 36.90 2.83
104 105 4.274602 TGCTGGATTTGATGCAAAACAT 57.725 36.364 0.00 0.00 43.54 2.71
105 106 3.997681 TGCTGGATTTGATGCAAAACATG 59.002 39.130 0.00 0.00 39.84 3.21
106 107 4.247258 GCTGGATTTGATGCAAAACATGA 58.753 39.130 0.00 0.00 39.84 3.07
107 108 4.873827 GCTGGATTTGATGCAAAACATGAT 59.126 37.500 0.00 0.00 39.84 2.45
108 109 5.006358 GCTGGATTTGATGCAAAACATGATC 59.994 40.000 0.00 0.00 39.84 2.92
109 110 5.421277 TGGATTTGATGCAAAACATGATCC 58.579 37.500 0.00 17.46 39.84 3.36
110 111 5.046520 TGGATTTGATGCAAAACATGATCCA 60.047 36.000 20.14 20.14 41.92 3.41
111 112 5.875910 GGATTTGATGCAAAACATGATCCAA 59.124 36.000 18.38 0.00 39.84 3.53
112 113 6.372103 GGATTTGATGCAAAACATGATCCAAA 59.628 34.615 18.38 0.00 39.84 3.28
113 114 6.788684 TTTGATGCAAAACATGATCCAAAG 57.211 33.333 0.00 0.00 39.84 2.77
114 115 5.725325 TGATGCAAAACATGATCCAAAGA 57.275 34.783 0.00 0.00 39.84 2.52
115 116 6.288941 TGATGCAAAACATGATCCAAAGAT 57.711 33.333 0.00 0.00 39.84 2.40
116 117 6.103330 TGATGCAAAACATGATCCAAAGATG 58.897 36.000 0.00 0.00 39.84 2.90
117 118 5.725325 TGCAAAACATGATCCAAAGATGA 57.275 34.783 0.00 0.00 30.90 2.92
118 119 5.716094 TGCAAAACATGATCCAAAGATGAG 58.284 37.500 0.00 0.00 30.90 2.90
119 120 5.107133 GCAAAACATGATCCAAAGATGAGG 58.893 41.667 0.00 0.00 30.90 3.86
120 121 5.657474 CAAAACATGATCCAAAGATGAGGG 58.343 41.667 0.00 0.00 30.90 4.30
121 122 4.868172 AACATGATCCAAAGATGAGGGA 57.132 40.909 0.00 0.00 30.90 4.20
122 123 4.868172 ACATGATCCAAAGATGAGGGAA 57.132 40.909 0.00 0.00 33.73 3.97
123 124 4.789807 ACATGATCCAAAGATGAGGGAAG 58.210 43.478 0.00 0.00 33.73 3.46
124 125 3.939740 TGATCCAAAGATGAGGGAAGG 57.060 47.619 0.00 0.00 33.73 3.46
125 126 3.192944 TGATCCAAAGATGAGGGAAGGT 58.807 45.455 0.00 0.00 33.73 3.50
126 127 3.593328 TGATCCAAAGATGAGGGAAGGTT 59.407 43.478 0.00 0.00 33.73 3.50
127 128 4.044571 TGATCCAAAGATGAGGGAAGGTTT 59.955 41.667 0.00 0.00 33.73 3.27
128 129 5.252863 TGATCCAAAGATGAGGGAAGGTTTA 59.747 40.000 0.00 0.00 33.73 2.01
129 130 5.179452 TCCAAAGATGAGGGAAGGTTTAG 57.821 43.478 0.00 0.00 0.00 1.85
130 131 4.018415 TCCAAAGATGAGGGAAGGTTTAGG 60.018 45.833 0.00 0.00 0.00 2.69
131 132 4.018415 CCAAAGATGAGGGAAGGTTTAGGA 60.018 45.833 0.00 0.00 0.00 2.94
132 133 5.189180 CAAAGATGAGGGAAGGTTTAGGAG 58.811 45.833 0.00 0.00 0.00 3.69
133 134 4.354208 AGATGAGGGAAGGTTTAGGAGA 57.646 45.455 0.00 0.00 0.00 3.71
134 135 4.294347 AGATGAGGGAAGGTTTAGGAGAG 58.706 47.826 0.00 0.00 0.00 3.20
135 136 3.562108 TGAGGGAAGGTTTAGGAGAGT 57.438 47.619 0.00 0.00 0.00 3.24
136 137 3.173965 TGAGGGAAGGTTTAGGAGAGTG 58.826 50.000 0.00 0.00 0.00 3.51
137 138 2.502130 GAGGGAAGGTTTAGGAGAGTGG 59.498 54.545 0.00 0.00 0.00 4.00
138 139 2.113777 AGGGAAGGTTTAGGAGAGTGGA 59.886 50.000 0.00 0.00 0.00 4.02
139 140 3.116174 GGGAAGGTTTAGGAGAGTGGAT 58.884 50.000 0.00 0.00 0.00 3.41
140 141 3.523972 GGGAAGGTTTAGGAGAGTGGATT 59.476 47.826 0.00 0.00 0.00 3.01
141 142 4.018324 GGGAAGGTTTAGGAGAGTGGATTT 60.018 45.833 0.00 0.00 0.00 2.17
142 143 4.944317 GGAAGGTTTAGGAGAGTGGATTTG 59.056 45.833 0.00 0.00 0.00 2.32
143 144 3.956744 AGGTTTAGGAGAGTGGATTTGC 58.043 45.455 0.00 0.00 0.00 3.68
144 145 3.330701 AGGTTTAGGAGAGTGGATTTGCA 59.669 43.478 0.00 0.00 0.00 4.08
145 146 3.440522 GGTTTAGGAGAGTGGATTTGCAC 59.559 47.826 0.00 0.00 0.00 4.57
146 147 4.327680 GTTTAGGAGAGTGGATTTGCACT 58.672 43.478 4.26 4.26 0.00 4.40
147 148 5.488341 GTTTAGGAGAGTGGATTTGCACTA 58.512 41.667 4.61 0.00 0.00 2.74
148 149 5.755409 TTAGGAGAGTGGATTTGCACTAA 57.245 39.130 4.61 0.00 0.00 2.24
149 150 4.213564 AGGAGAGTGGATTTGCACTAAG 57.786 45.455 4.61 0.00 0.00 2.18
150 151 3.054802 AGGAGAGTGGATTTGCACTAAGG 60.055 47.826 4.61 0.00 0.00 2.69
151 152 2.680339 GAGAGTGGATTTGCACTAAGGC 59.320 50.000 4.61 0.00 0.00 4.35
152 153 1.745653 GAGTGGATTTGCACTAAGGCC 59.254 52.381 4.61 0.00 0.00 5.19
153 154 1.075374 AGTGGATTTGCACTAAGGCCA 59.925 47.619 5.01 0.00 0.00 5.36
154 155 2.102578 GTGGATTTGCACTAAGGCCAT 58.897 47.619 5.01 0.00 0.00 4.40
155 156 2.101783 TGGATTTGCACTAAGGCCATG 58.898 47.619 5.01 0.00 0.00 3.66
156 157 1.410153 GGATTTGCACTAAGGCCATGG 59.590 52.381 7.63 7.63 0.00 3.66
157 158 0.826062 ATTTGCACTAAGGCCATGGC 59.174 50.000 29.47 29.47 41.06 4.40
158 159 0.541530 TTTGCACTAAGGCCATGGCA 60.542 50.000 36.56 16.97 44.11 4.92
159 160 0.541530 TTGCACTAAGGCCATGGCAA 60.542 50.000 36.56 20.59 44.11 4.52
160 161 0.966875 TGCACTAAGGCCATGGCAAG 60.967 55.000 36.56 29.35 44.11 4.01
161 162 0.680921 GCACTAAGGCCATGGCAAGA 60.681 55.000 36.56 19.75 44.11 3.02
162 163 1.386533 CACTAAGGCCATGGCAAGAG 58.613 55.000 36.56 28.64 44.11 2.85
163 164 0.257039 ACTAAGGCCATGGCAAGAGG 59.743 55.000 36.56 22.92 44.11 3.69
164 165 0.466922 CTAAGGCCATGGCAAGAGGG 60.467 60.000 36.56 17.38 44.11 4.30
165 166 0.918799 TAAGGCCATGGCAAGAGGGA 60.919 55.000 36.56 12.35 44.11 4.20
166 167 1.803453 AAGGCCATGGCAAGAGGGAA 61.803 55.000 36.56 0.00 44.11 3.97
167 168 1.075748 GGCCATGGCAAGAGGGAAT 60.076 57.895 36.56 0.00 44.11 3.01
168 169 0.688749 GGCCATGGCAAGAGGGAATT 60.689 55.000 36.56 0.00 44.11 2.17
169 170 0.462789 GCCATGGCAAGAGGGAATTG 59.537 55.000 32.08 0.00 41.49 2.32
170 171 1.856629 CCATGGCAAGAGGGAATTGT 58.143 50.000 0.00 0.00 0.00 2.71
171 172 2.181975 CCATGGCAAGAGGGAATTGTT 58.818 47.619 0.00 0.00 0.00 2.83
172 173 2.093869 CCATGGCAAGAGGGAATTGTTG 60.094 50.000 0.00 0.00 0.00 3.33
173 174 2.673775 TGGCAAGAGGGAATTGTTGA 57.326 45.000 0.00 0.00 0.00 3.18
174 175 2.956132 TGGCAAGAGGGAATTGTTGAA 58.044 42.857 0.00 0.00 0.00 2.69
175 176 3.303938 TGGCAAGAGGGAATTGTTGAAA 58.696 40.909 0.00 0.00 0.00 2.69
176 177 3.321682 TGGCAAGAGGGAATTGTTGAAAG 59.678 43.478 0.00 0.00 0.00 2.62
177 178 3.321968 GGCAAGAGGGAATTGTTGAAAGT 59.678 43.478 0.00 0.00 0.00 2.66
178 179 4.301628 GCAAGAGGGAATTGTTGAAAGTG 58.698 43.478 0.00 0.00 0.00 3.16
179 180 4.797275 GCAAGAGGGAATTGTTGAAAGTGG 60.797 45.833 0.00 0.00 0.00 4.00
180 181 4.184649 AGAGGGAATTGTTGAAAGTGGT 57.815 40.909 0.00 0.00 0.00 4.16
181 182 5.319043 AGAGGGAATTGTTGAAAGTGGTA 57.681 39.130 0.00 0.00 0.00 3.25
182 183 5.701224 AGAGGGAATTGTTGAAAGTGGTAA 58.299 37.500 0.00 0.00 0.00 2.85
183 184 6.133356 AGAGGGAATTGTTGAAAGTGGTAAA 58.867 36.000 0.00 0.00 0.00 2.01
184 185 6.265422 AGAGGGAATTGTTGAAAGTGGTAAAG 59.735 38.462 0.00 0.00 0.00 1.85
185 186 5.304357 AGGGAATTGTTGAAAGTGGTAAAGG 59.696 40.000 0.00 0.00 0.00 3.11
186 187 5.303333 GGGAATTGTTGAAAGTGGTAAAGGA 59.697 40.000 0.00 0.00 0.00 3.36
187 188 6.014584 GGGAATTGTTGAAAGTGGTAAAGGAT 60.015 38.462 0.00 0.00 0.00 3.24
188 189 7.090808 GGAATTGTTGAAAGTGGTAAAGGATC 58.909 38.462 0.00 0.00 0.00 3.36
189 190 7.255801 GGAATTGTTGAAAGTGGTAAAGGATCA 60.256 37.037 0.00 0.00 0.00 2.92
190 191 7.781324 ATTGTTGAAAGTGGTAAAGGATCAT 57.219 32.000 0.00 0.00 0.00 2.45
191 192 7.595819 TTGTTGAAAGTGGTAAAGGATCATT 57.404 32.000 0.00 0.00 0.00 2.57
192 193 7.214467 TGTTGAAAGTGGTAAAGGATCATTC 57.786 36.000 0.00 0.00 0.00 2.67
193 194 6.208599 TGTTGAAAGTGGTAAAGGATCATTCC 59.791 38.462 0.00 0.00 42.96 3.01
194 195 5.886609 TGAAAGTGGTAAAGGATCATTCCA 58.113 37.500 0.00 0.00 45.30 3.53
195 196 6.310941 TGAAAGTGGTAAAGGATCATTCCAA 58.689 36.000 2.42 0.00 45.30 3.53
196 197 6.780031 TGAAAGTGGTAAAGGATCATTCCAAA 59.220 34.615 2.42 0.00 45.30 3.28
197 198 7.288852 TGAAAGTGGTAAAGGATCATTCCAAAA 59.711 33.333 2.42 0.00 45.30 2.44
198 199 6.840780 AGTGGTAAAGGATCATTCCAAAAG 57.159 37.500 2.42 0.00 45.30 2.27
199 200 5.185828 AGTGGTAAAGGATCATTCCAAAAGC 59.814 40.000 2.42 0.00 45.30 3.51
200 201 4.466015 TGGTAAAGGATCATTCCAAAAGCC 59.534 41.667 0.00 0.00 45.30 4.35
201 202 4.466015 GGTAAAGGATCATTCCAAAAGCCA 59.534 41.667 0.00 0.00 45.30 4.75
202 203 5.129320 GGTAAAGGATCATTCCAAAAGCCAT 59.871 40.000 0.00 0.00 45.30 4.40
203 204 6.323739 GGTAAAGGATCATTCCAAAAGCCATA 59.676 38.462 0.00 0.00 45.30 2.74
204 205 6.475596 AAAGGATCATTCCAAAAGCCATAG 57.524 37.500 0.00 0.00 45.30 2.23
205 206 5.134725 AGGATCATTCCAAAAGCCATAGT 57.865 39.130 0.00 0.00 45.30 2.12
206 207 4.891756 AGGATCATTCCAAAAGCCATAGTG 59.108 41.667 0.00 0.00 45.30 2.74
207 208 4.500375 GGATCATTCCAAAAGCCATAGTGC 60.500 45.833 0.00 0.00 42.12 4.40
208 209 3.429492 TCATTCCAAAAGCCATAGTGCA 58.571 40.909 0.00 0.00 0.00 4.57
209 210 3.831333 TCATTCCAAAAGCCATAGTGCAA 59.169 39.130 0.00 0.00 0.00 4.08
210 211 4.282957 TCATTCCAAAAGCCATAGTGCAAA 59.717 37.500 0.00 0.00 0.00 3.68
211 212 4.888326 TTCCAAAAGCCATAGTGCAAAT 57.112 36.364 0.00 0.00 0.00 2.32
212 213 4.888326 TCCAAAAGCCATAGTGCAAATT 57.112 36.364 0.00 0.00 0.00 1.82
213 214 5.226194 TCCAAAAGCCATAGTGCAAATTT 57.774 34.783 0.00 0.00 0.00 1.82
214 215 5.237048 TCCAAAAGCCATAGTGCAAATTTC 58.763 37.500 0.00 0.00 0.00 2.17
215 216 4.996122 CCAAAAGCCATAGTGCAAATTTCA 59.004 37.500 0.00 0.00 0.00 2.69
216 217 5.469421 CCAAAAGCCATAGTGCAAATTTCAA 59.531 36.000 0.00 0.00 0.00 2.69
217 218 6.017275 CCAAAAGCCATAGTGCAAATTTCAAA 60.017 34.615 0.00 0.00 0.00 2.69
218 219 6.790285 AAAGCCATAGTGCAAATTTCAAAG 57.210 33.333 0.00 0.00 0.00 2.77
219 220 5.726980 AGCCATAGTGCAAATTTCAAAGA 57.273 34.783 0.00 0.00 0.00 2.52
220 221 5.717119 AGCCATAGTGCAAATTTCAAAGAG 58.283 37.500 0.00 0.00 0.00 2.85
221 222 5.477984 AGCCATAGTGCAAATTTCAAAGAGA 59.522 36.000 0.00 0.00 0.00 3.10
222 223 6.154021 AGCCATAGTGCAAATTTCAAAGAGAT 59.846 34.615 0.00 0.00 0.00 2.75
223 224 6.815142 GCCATAGTGCAAATTTCAAAGAGATT 59.185 34.615 0.00 0.00 0.00 2.40
224 225 7.332678 GCCATAGTGCAAATTTCAAAGAGATTT 59.667 33.333 0.00 0.00 28.50 2.17
225 226 9.211485 CCATAGTGCAAATTTCAAAGAGATTTT 57.789 29.630 0.00 0.00 26.41 1.82
227 228 9.985730 ATAGTGCAAATTTCAAAGAGATTTTCA 57.014 25.926 0.00 0.00 26.41 2.69
228 229 8.721019 AGTGCAAATTTCAAAGAGATTTTCAA 57.279 26.923 0.00 0.00 26.59 2.69
229 230 9.165035 AGTGCAAATTTCAAAGAGATTTTCAAA 57.835 25.926 0.00 0.00 26.59 2.69
230 231 9.771915 GTGCAAATTTCAAAGAGATTTTCAAAA 57.228 25.926 0.00 0.00 26.59 2.44
231 232 9.991388 TGCAAATTTCAAAGAGATTTTCAAAAG 57.009 25.926 0.00 0.00 26.41 2.27
232 233 9.442033 GCAAATTTCAAAGAGATTTTCAAAAGG 57.558 29.630 0.00 0.00 26.41 3.11
233 234 9.442033 CAAATTTCAAAGAGATTTTCAAAAGGC 57.558 29.630 0.00 0.00 26.41 4.35
234 235 8.735692 AATTTCAAAGAGATTTTCAAAAGGCA 57.264 26.923 0.00 0.00 0.00 4.75
235 236 8.913487 ATTTCAAAGAGATTTTCAAAAGGCAT 57.087 26.923 0.00 0.00 0.00 4.40
236 237 8.735692 TTTCAAAGAGATTTTCAAAAGGCATT 57.264 26.923 0.00 0.00 0.00 3.56
237 238 8.735692 TTCAAAGAGATTTTCAAAAGGCATTT 57.264 26.923 0.00 0.00 0.00 2.32
238 239 8.735692 TCAAAGAGATTTTCAAAAGGCATTTT 57.264 26.923 2.67 2.67 39.22 1.82
239 240 9.176460 TCAAAGAGATTTTCAAAAGGCATTTTT 57.824 25.926 6.30 0.00 39.55 1.94
240 241 9.442033 CAAAGAGATTTTCAAAAGGCATTTTTC 57.558 29.630 6.30 1.79 36.87 2.29
241 242 8.969260 AAGAGATTTTCAAAAGGCATTTTTCT 57.031 26.923 6.30 6.88 36.87 2.52
242 243 8.599055 AGAGATTTTCAAAAGGCATTTTTCTC 57.401 30.769 19.89 19.89 37.45 2.87
243 244 8.206189 AGAGATTTTCAAAAGGCATTTTTCTCA 58.794 29.630 25.25 7.52 38.54 3.27
244 245 8.735692 AGATTTTCAAAAGGCATTTTTCTCAA 57.264 26.923 6.30 0.00 36.87 3.02
245 246 8.833493 AGATTTTCAAAAGGCATTTTTCTCAAG 58.167 29.630 6.30 0.00 36.87 3.02
246 247 7.920160 TTTTCAAAAGGCATTTTTCTCAAGT 57.080 28.000 6.30 0.00 36.87 3.16
247 248 6.907206 TTCAAAAGGCATTTTTCTCAAGTG 57.093 33.333 6.30 0.00 36.87 3.16
248 249 6.219417 TCAAAAGGCATTTTTCTCAAGTGA 57.781 33.333 6.30 0.00 36.87 3.41
249 250 6.638610 TCAAAAGGCATTTTTCTCAAGTGAA 58.361 32.000 6.30 0.00 36.87 3.18
250 251 7.102346 TCAAAAGGCATTTTTCTCAAGTGAAA 58.898 30.769 6.30 0.00 36.87 2.69
251 252 7.605691 TCAAAAGGCATTTTTCTCAAGTGAAAA 59.394 29.630 6.30 6.08 42.12 2.29
252 253 7.543947 AAAGGCATTTTTCTCAAGTGAAAAG 57.456 32.000 9.20 2.75 43.79 2.27
253 254 6.225981 AGGCATTTTTCTCAAGTGAAAAGT 57.774 33.333 9.20 5.29 43.79 2.66
254 255 7.346751 AGGCATTTTTCTCAAGTGAAAAGTA 57.653 32.000 9.20 0.00 43.79 2.24
255 256 7.955918 AGGCATTTTTCTCAAGTGAAAAGTAT 58.044 30.769 9.20 1.39 43.79 2.12
256 257 8.424133 AGGCATTTTTCTCAAGTGAAAAGTATT 58.576 29.630 9.20 0.00 43.79 1.89
257 258 9.045223 GGCATTTTTCTCAAGTGAAAAGTATTT 57.955 29.630 9.20 0.00 43.79 1.40
281 282 8.419076 TTTGTCTTGAGTCAAAATAAAAAGGC 57.581 30.769 7.06 0.00 32.00 4.35
282 283 7.106439 TGTCTTGAGTCAAAATAAAAAGGCA 57.894 32.000 7.06 0.00 0.00 4.75
283 284 7.551585 TGTCTTGAGTCAAAATAAAAAGGCAA 58.448 30.769 7.06 0.00 0.00 4.52
284 285 7.706179 TGTCTTGAGTCAAAATAAAAAGGCAAG 59.294 33.333 7.06 0.00 0.00 4.01
285 286 7.169813 GTCTTGAGTCAAAATAAAAAGGCAAGG 59.830 37.037 7.06 0.00 32.27 3.61
286 287 6.723298 TGAGTCAAAATAAAAAGGCAAGGA 57.277 33.333 0.00 0.00 0.00 3.36
287 288 6.512297 TGAGTCAAAATAAAAAGGCAAGGAC 58.488 36.000 0.00 0.00 0.00 3.85
288 289 5.853936 AGTCAAAATAAAAAGGCAAGGACC 58.146 37.500 0.00 0.00 0.00 4.46
289 290 5.602561 AGTCAAAATAAAAAGGCAAGGACCT 59.397 36.000 0.00 0.00 43.91 3.85
290 291 5.926542 GTCAAAATAAAAAGGCAAGGACCTC 59.073 40.000 0.00 0.00 39.93 3.85
291 292 5.011635 TCAAAATAAAAAGGCAAGGACCTCC 59.988 40.000 0.00 0.00 39.93 4.30
292 293 3.825908 ATAAAAAGGCAAGGACCTCCA 57.174 42.857 0.00 0.00 39.93 3.86
293 294 2.470057 AAAAAGGCAAGGACCTCCAA 57.530 45.000 0.00 0.00 39.93 3.53
294 295 2.001076 AAAAGGCAAGGACCTCCAAG 57.999 50.000 0.00 0.00 39.93 3.61
295 296 1.149101 AAAGGCAAGGACCTCCAAGA 58.851 50.000 0.00 0.00 39.93 3.02
296 297 0.402121 AAGGCAAGGACCTCCAAGAC 59.598 55.000 0.00 0.00 39.93 3.01
297 298 1.002011 GGCAAGGACCTCCAAGACC 60.002 63.158 0.00 0.00 38.89 3.85
298 299 1.761174 GCAAGGACCTCCAAGACCA 59.239 57.895 0.00 0.00 38.89 4.02
299 300 0.110486 GCAAGGACCTCCAAGACCAA 59.890 55.000 0.00 0.00 38.89 3.67
300 301 1.478654 GCAAGGACCTCCAAGACCAAA 60.479 52.381 0.00 0.00 38.89 3.28
301 302 2.944129 CAAGGACCTCCAAGACCAAAA 58.056 47.619 0.00 0.00 38.89 2.44
302 303 2.887152 CAAGGACCTCCAAGACCAAAAG 59.113 50.000 0.00 0.00 38.89 2.27
303 304 1.202940 AGGACCTCCAAGACCAAAAGC 60.203 52.381 0.00 0.00 38.89 3.51
304 305 1.478654 GGACCTCCAAGACCAAAAGCA 60.479 52.381 0.00 0.00 35.64 3.91
305 306 2.306847 GACCTCCAAGACCAAAAGCAA 58.693 47.619 0.00 0.00 0.00 3.91
306 307 2.294512 GACCTCCAAGACCAAAAGCAAG 59.705 50.000 0.00 0.00 0.00 4.01
307 308 2.310538 CCTCCAAGACCAAAAGCAAGT 58.689 47.619 0.00 0.00 0.00 3.16
308 309 2.294512 CCTCCAAGACCAAAAGCAAGTC 59.705 50.000 0.00 0.00 0.00 3.01
309 310 3.217626 CTCCAAGACCAAAAGCAAGTCT 58.782 45.455 0.00 0.00 42.58 3.24
313 314 2.310538 AGACCAAAAGCAAGTCTTGGG 58.689 47.619 14.40 8.70 43.30 4.12
314 315 2.031870 GACCAAAAGCAAGTCTTGGGT 58.968 47.619 14.40 11.71 43.30 4.51
315 316 1.756538 ACCAAAAGCAAGTCTTGGGTG 59.243 47.619 14.40 0.00 43.30 4.61
316 317 2.031120 CCAAAAGCAAGTCTTGGGTGA 58.969 47.619 14.40 0.00 36.70 4.02
317 318 2.430332 CCAAAAGCAAGTCTTGGGTGAA 59.570 45.455 14.40 0.00 36.70 3.18
318 319 3.070015 CCAAAAGCAAGTCTTGGGTGAAT 59.930 43.478 14.40 0.00 36.70 2.57
319 320 4.301628 CAAAAGCAAGTCTTGGGTGAATC 58.698 43.478 14.40 0.00 34.67 2.52
320 321 2.206576 AGCAAGTCTTGGGTGAATCC 57.793 50.000 14.40 0.00 0.00 3.01
321 322 1.425066 AGCAAGTCTTGGGTGAATCCA 59.575 47.619 14.40 0.00 38.11 3.41
322 323 2.158475 AGCAAGTCTTGGGTGAATCCAA 60.158 45.455 14.40 0.00 43.82 3.53
323 324 2.627699 GCAAGTCTTGGGTGAATCCAAA 59.372 45.455 14.40 0.00 45.13 3.28
324 325 3.069443 GCAAGTCTTGGGTGAATCCAAAA 59.931 43.478 14.40 0.00 45.13 2.44
325 326 4.262592 GCAAGTCTTGGGTGAATCCAAAAT 60.263 41.667 14.40 0.00 45.13 1.82
326 327 5.047377 GCAAGTCTTGGGTGAATCCAAAATA 60.047 40.000 14.40 0.00 45.13 1.40
327 328 6.518200 GCAAGTCTTGGGTGAATCCAAAATAA 60.518 38.462 14.40 0.00 45.13 1.40
328 329 7.614494 CAAGTCTTGGGTGAATCCAAAATAAT 58.386 34.615 4.52 0.00 45.13 1.28
329 330 8.748412 CAAGTCTTGGGTGAATCCAAAATAATA 58.252 33.333 4.52 0.00 45.13 0.98
330 331 8.893563 AGTCTTGGGTGAATCCAAAATAATAA 57.106 30.769 0.00 0.00 45.13 1.40
331 332 9.492730 AGTCTTGGGTGAATCCAAAATAATAAT 57.507 29.630 0.00 0.00 45.13 1.28
379 380 6.857437 ATATTGAAAGGGAGGTTTCTTTGG 57.143 37.500 0.00 0.00 37.34 3.28
380 381 3.963476 TGAAAGGGAGGTTTCTTTGGA 57.037 42.857 0.00 0.00 37.34 3.53
381 382 4.258457 TGAAAGGGAGGTTTCTTTGGAA 57.742 40.909 0.00 0.00 37.34 3.53
382 383 4.215109 TGAAAGGGAGGTTTCTTTGGAAG 58.785 43.478 0.00 0.00 37.34 3.46
383 384 4.079443 TGAAAGGGAGGTTTCTTTGGAAGA 60.079 41.667 0.00 0.00 37.34 2.87
384 385 4.536295 AAGGGAGGTTTCTTTGGAAGAA 57.464 40.909 0.00 0.00 45.30 2.52
409 410 7.855784 AAAATTTAAATCACCTCCCTCAAGT 57.144 32.000 0.10 0.00 0.00 3.16
410 411 7.468141 AAATTTAAATCACCTCCCTCAAGTC 57.532 36.000 0.10 0.00 0.00 3.01
411 412 5.576563 TTTAAATCACCTCCCTCAAGTCA 57.423 39.130 0.00 0.00 0.00 3.41
412 413 5.576563 TTAAATCACCTCCCTCAAGTCAA 57.423 39.130 0.00 0.00 0.00 3.18
413 414 4.453480 AAATCACCTCCCTCAAGTCAAA 57.547 40.909 0.00 0.00 0.00 2.69
414 415 4.664688 AATCACCTCCCTCAAGTCAAAT 57.335 40.909 0.00 0.00 0.00 2.32
415 416 5.779241 AATCACCTCCCTCAAGTCAAATA 57.221 39.130 0.00 0.00 0.00 1.40
416 417 5.779241 ATCACCTCCCTCAAGTCAAATAA 57.221 39.130 0.00 0.00 0.00 1.40
417 418 5.576563 TCACCTCCCTCAAGTCAAATAAA 57.423 39.130 0.00 0.00 0.00 1.40
418 419 5.947663 TCACCTCCCTCAAGTCAAATAAAA 58.052 37.500 0.00 0.00 0.00 1.52
419 420 6.552008 TCACCTCCCTCAAGTCAAATAAAAT 58.448 36.000 0.00 0.00 0.00 1.82
420 421 6.659242 TCACCTCCCTCAAGTCAAATAAAATC 59.341 38.462 0.00 0.00 0.00 2.17
421 422 6.660949 CACCTCCCTCAAGTCAAATAAAATCT 59.339 38.462 0.00 0.00 0.00 2.40
422 423 7.177392 CACCTCCCTCAAGTCAAATAAAATCTT 59.823 37.037 0.00 0.00 0.00 2.40
423 424 7.730332 ACCTCCCTCAAGTCAAATAAAATCTTT 59.270 33.333 0.00 0.00 0.00 2.52
424 425 8.588472 CCTCCCTCAAGTCAAATAAAATCTTTT 58.412 33.333 0.00 0.00 0.00 2.27
425 426 9.415544 CTCCCTCAAGTCAAATAAAATCTTTTG 57.584 33.333 0.00 0.00 34.80 2.44
426 427 9.142014 TCCCTCAAGTCAAATAAAATCTTTTGA 57.858 29.630 0.00 0.00 39.00 2.69
427 428 9.762933 CCCTCAAGTCAAATAAAATCTTTTGAA 57.237 29.630 0.11 0.00 41.90 2.69
453 454 8.986929 AAATCCAAATAAAATTTTGGGTGTCA 57.013 26.923 13.76 0.00 46.91 3.58
454 455 8.389779 AATCCAAATAAAATTTTGGGTGTCAC 57.610 30.769 13.76 0.00 46.91 3.67
532 533 3.876274 TGGAAACTCTCTCTTCGGATG 57.124 47.619 0.00 0.00 0.00 3.51
539 540 3.210227 CTCTCTCTTCGGATGTCTGCTA 58.790 50.000 0.00 0.00 0.00 3.49
862 877 1.564348 GGGTTTTGGCCTATGAGGAGA 59.436 52.381 3.32 0.00 37.67 3.71
865 880 3.274288 GTTTTGGCCTATGAGGAGACTG 58.726 50.000 3.32 0.00 44.43 3.51
892 907 4.159693 AGACGTATCATGGTGCTTTGTCTA 59.840 41.667 2.14 0.00 32.81 2.59
958 973 1.694150 TCACTGCTAGTGTTCTGCCTT 59.306 47.619 13.59 0.00 46.03 4.35
966 981 1.873591 AGTGTTCTGCCTTAGTTTGCG 59.126 47.619 0.00 0.00 0.00 4.85
1059 1074 5.193679 GGTGATGCCTTATACCTTTCTGTT 58.806 41.667 0.00 0.00 0.00 3.16
1099 1114 4.663334 TCTTCAGCAAGGTGACTCTACTA 58.337 43.478 0.81 0.00 42.68 1.82
1119 1134 9.665719 TCTACTATTGATGACTTTTATGCACAA 57.334 29.630 0.00 0.00 0.00 3.33
1217 1232 3.512724 CAGGCCAATTTGGAGTTTCATCT 59.487 43.478 19.76 0.54 40.96 2.90
1459 1474 0.392327 GCTCTTGCCCACTCCTTCTC 60.392 60.000 0.00 0.00 0.00 2.87
1729 1744 1.264749 TGAGCAACCGCCCTCTACAT 61.265 55.000 0.00 0.00 39.83 2.29
1993 2014 2.673368 GGTTGTCGTGTCATCCTTGATC 59.327 50.000 0.00 0.00 33.56 2.92
2087 2108 1.982958 GGGTCTTTGGGAGTTGGACTA 59.017 52.381 0.00 0.00 0.00 2.59
2107 2128 3.151912 AGCTTCATGTTCCTTCTGCTT 57.848 42.857 0.00 0.00 0.00 3.91
2208 2244 0.537653 TGTGTGGTTCTCGGTTGTCA 59.462 50.000 0.00 0.00 0.00 3.58
2218 2254 5.469084 GGTTCTCGGTTGTCATCTTTAGTTT 59.531 40.000 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.193930 TGTCTTCTATCCTAGACCTTGGAGA 59.806 44.000 6.39 1.28 40.00 3.71
5 6 5.450453 TGTCTTCTATCCTAGACCTTGGAG 58.550 45.833 6.39 0.00 40.00 3.86
6 7 5.193930 TCTGTCTTCTATCCTAGACCTTGGA 59.806 44.000 2.87 2.87 40.00 3.53
7 8 5.450453 TCTGTCTTCTATCCTAGACCTTGG 58.550 45.833 0.00 0.00 40.00 3.61
8 9 7.411486 TTTCTGTCTTCTATCCTAGACCTTG 57.589 40.000 0.00 0.00 40.00 3.61
59 60 9.726438 GCAAGTTGTACCTCTCCATATAATTAT 57.274 33.333 4.48 2.97 0.00 1.28
60 61 8.934697 AGCAAGTTGTACCTCTCCATATAATTA 58.065 33.333 4.48 0.00 0.00 1.40
61 62 7.716998 CAGCAAGTTGTACCTCTCCATATAATT 59.283 37.037 4.48 0.00 0.00 1.40
62 63 7.220030 CAGCAAGTTGTACCTCTCCATATAAT 58.780 38.462 4.48 0.00 0.00 1.28
63 64 6.408092 CCAGCAAGTTGTACCTCTCCATATAA 60.408 42.308 4.48 0.00 0.00 0.98
64 65 5.070446 CCAGCAAGTTGTACCTCTCCATATA 59.930 44.000 4.48 0.00 0.00 0.86
65 66 4.141620 CCAGCAAGTTGTACCTCTCCATAT 60.142 45.833 4.48 0.00 0.00 1.78
66 67 3.197766 CCAGCAAGTTGTACCTCTCCATA 59.802 47.826 4.48 0.00 0.00 2.74
67 68 2.026822 CCAGCAAGTTGTACCTCTCCAT 60.027 50.000 4.48 0.00 0.00 3.41
68 69 1.347707 CCAGCAAGTTGTACCTCTCCA 59.652 52.381 4.48 0.00 0.00 3.86
69 70 1.623811 TCCAGCAAGTTGTACCTCTCC 59.376 52.381 4.48 0.00 0.00 3.71
70 71 3.618690 ATCCAGCAAGTTGTACCTCTC 57.381 47.619 4.48 0.00 0.00 3.20
71 72 4.074970 CAAATCCAGCAAGTTGTACCTCT 58.925 43.478 4.48 0.00 0.00 3.69
72 73 4.072131 TCAAATCCAGCAAGTTGTACCTC 58.928 43.478 4.48 0.00 0.00 3.85
73 74 4.098914 TCAAATCCAGCAAGTTGTACCT 57.901 40.909 4.48 0.00 0.00 3.08
74 75 4.737054 CATCAAATCCAGCAAGTTGTACC 58.263 43.478 4.48 0.00 0.00 3.34
75 76 4.168760 GCATCAAATCCAGCAAGTTGTAC 58.831 43.478 4.48 0.00 0.00 2.90
76 77 3.825585 TGCATCAAATCCAGCAAGTTGTA 59.174 39.130 4.48 0.00 33.48 2.41
77 78 2.629137 TGCATCAAATCCAGCAAGTTGT 59.371 40.909 4.48 0.00 33.48 3.32
78 79 3.306917 TGCATCAAATCCAGCAAGTTG 57.693 42.857 0.00 0.00 33.48 3.16
79 80 4.339872 TTTGCATCAAATCCAGCAAGTT 57.660 36.364 0.00 0.00 46.24 2.66
80 81 4.060205 GTTTTGCATCAAATCCAGCAAGT 58.940 39.130 0.00 0.00 46.24 3.16
81 82 4.059511 TGTTTTGCATCAAATCCAGCAAG 58.940 39.130 0.00 0.00 46.24 4.01
82 83 4.069300 TGTTTTGCATCAAATCCAGCAA 57.931 36.364 0.00 0.00 44.36 3.91
83 84 3.747854 TGTTTTGCATCAAATCCAGCA 57.252 38.095 0.00 0.00 33.19 4.41
84 85 4.247258 TCATGTTTTGCATCAAATCCAGC 58.753 39.130 0.00 0.00 35.19 4.85
85 86 5.522460 GGATCATGTTTTGCATCAAATCCAG 59.478 40.000 17.06 1.26 37.72 3.86
86 87 5.046520 TGGATCATGTTTTGCATCAAATCCA 60.047 36.000 18.84 18.84 41.27 3.41
87 88 5.421277 TGGATCATGTTTTGCATCAAATCC 58.579 37.500 16.10 16.10 37.99 3.01
88 89 6.971527 TTGGATCATGTTTTGCATCAAATC 57.028 33.333 0.00 0.00 35.19 2.17
89 90 7.162761 TCTTTGGATCATGTTTTGCATCAAAT 58.837 30.769 0.00 0.00 35.19 2.32
90 91 6.522946 TCTTTGGATCATGTTTTGCATCAAA 58.477 32.000 0.00 0.00 35.19 2.69
91 92 6.099159 TCTTTGGATCATGTTTTGCATCAA 57.901 33.333 0.00 0.00 35.19 2.57
92 93 5.725325 TCTTTGGATCATGTTTTGCATCA 57.275 34.783 0.00 0.00 35.19 3.07
93 94 6.334989 TCATCTTTGGATCATGTTTTGCATC 58.665 36.000 0.00 0.00 35.19 3.91
94 95 6.288941 TCATCTTTGGATCATGTTTTGCAT 57.711 33.333 0.00 0.00 38.60 3.96
95 96 5.336929 CCTCATCTTTGGATCATGTTTTGCA 60.337 40.000 0.00 0.00 0.00 4.08
96 97 5.107133 CCTCATCTTTGGATCATGTTTTGC 58.893 41.667 0.00 0.00 0.00 3.68
97 98 5.419788 TCCCTCATCTTTGGATCATGTTTTG 59.580 40.000 0.00 0.00 0.00 2.44
98 99 5.582953 TCCCTCATCTTTGGATCATGTTTT 58.417 37.500 0.00 0.00 0.00 2.43
99 100 5.197224 TCCCTCATCTTTGGATCATGTTT 57.803 39.130 0.00 0.00 0.00 2.83
100 101 4.868172 TCCCTCATCTTTGGATCATGTT 57.132 40.909 0.00 0.00 0.00 2.71
101 102 4.386088 CCTTCCCTCATCTTTGGATCATGT 60.386 45.833 0.00 0.00 0.00 3.21
102 103 4.142790 CCTTCCCTCATCTTTGGATCATG 58.857 47.826 0.00 0.00 0.00 3.07
103 104 3.790408 ACCTTCCCTCATCTTTGGATCAT 59.210 43.478 0.00 0.00 0.00 2.45
104 105 3.192944 ACCTTCCCTCATCTTTGGATCA 58.807 45.455 0.00 0.00 0.00 2.92
105 106 3.941704 ACCTTCCCTCATCTTTGGATC 57.058 47.619 0.00 0.00 0.00 3.36
106 107 4.682021 AAACCTTCCCTCATCTTTGGAT 57.318 40.909 0.00 0.00 0.00 3.41
107 108 4.018415 CCTAAACCTTCCCTCATCTTTGGA 60.018 45.833 0.00 0.00 0.00 3.53
108 109 4.018415 TCCTAAACCTTCCCTCATCTTTGG 60.018 45.833 0.00 0.00 0.00 3.28
109 110 5.045578 TCTCCTAAACCTTCCCTCATCTTTG 60.046 44.000 0.00 0.00 0.00 2.77
110 111 5.101529 TCTCCTAAACCTTCCCTCATCTTT 58.898 41.667 0.00 0.00 0.00 2.52
111 112 4.699994 TCTCCTAAACCTTCCCTCATCTT 58.300 43.478 0.00 0.00 0.00 2.40
112 113 4.265078 ACTCTCCTAAACCTTCCCTCATCT 60.265 45.833 0.00 0.00 0.00 2.90
113 114 4.034410 ACTCTCCTAAACCTTCCCTCATC 58.966 47.826 0.00 0.00 0.00 2.92
114 115 3.777522 CACTCTCCTAAACCTTCCCTCAT 59.222 47.826 0.00 0.00 0.00 2.90
115 116 3.173965 CACTCTCCTAAACCTTCCCTCA 58.826 50.000 0.00 0.00 0.00 3.86
116 117 2.502130 CCACTCTCCTAAACCTTCCCTC 59.498 54.545 0.00 0.00 0.00 4.30
117 118 2.113777 TCCACTCTCCTAAACCTTCCCT 59.886 50.000 0.00 0.00 0.00 4.20
118 119 2.547990 TCCACTCTCCTAAACCTTCCC 58.452 52.381 0.00 0.00 0.00 3.97
119 120 4.846168 AATCCACTCTCCTAAACCTTCC 57.154 45.455 0.00 0.00 0.00 3.46
120 121 4.396478 GCAAATCCACTCTCCTAAACCTTC 59.604 45.833 0.00 0.00 0.00 3.46
121 122 4.202567 TGCAAATCCACTCTCCTAAACCTT 60.203 41.667 0.00 0.00 0.00 3.50
122 123 3.330701 TGCAAATCCACTCTCCTAAACCT 59.669 43.478 0.00 0.00 0.00 3.50
123 124 3.440522 GTGCAAATCCACTCTCCTAAACC 59.559 47.826 0.00 0.00 33.02 3.27
124 125 4.327680 AGTGCAAATCCACTCTCCTAAAC 58.672 43.478 0.00 0.00 42.10 2.01
125 126 4.640771 AGTGCAAATCCACTCTCCTAAA 57.359 40.909 0.00 0.00 42.10 1.85
126 127 5.338381 CCTTAGTGCAAATCCACTCTCCTAA 60.338 44.000 0.00 0.00 44.48 2.69
127 128 4.162320 CCTTAGTGCAAATCCACTCTCCTA 59.838 45.833 0.00 0.00 44.48 2.94
128 129 3.054802 CCTTAGTGCAAATCCACTCTCCT 60.055 47.826 0.00 0.00 44.48 3.69
129 130 3.274288 CCTTAGTGCAAATCCACTCTCC 58.726 50.000 0.00 0.00 44.48 3.71
130 131 2.680339 GCCTTAGTGCAAATCCACTCTC 59.320 50.000 0.00 0.00 44.48 3.20
131 132 2.619074 GGCCTTAGTGCAAATCCACTCT 60.619 50.000 0.00 0.00 44.48 3.24
132 133 1.745653 GGCCTTAGTGCAAATCCACTC 59.254 52.381 0.00 0.00 44.48 3.51
133 134 1.075374 TGGCCTTAGTGCAAATCCACT 59.925 47.619 3.32 0.23 46.98 4.00
134 135 1.544724 TGGCCTTAGTGCAAATCCAC 58.455 50.000 3.32 0.00 35.98 4.02
135 136 2.101783 CATGGCCTTAGTGCAAATCCA 58.898 47.619 3.32 0.00 0.00 3.41
136 137 1.410153 CCATGGCCTTAGTGCAAATCC 59.590 52.381 3.32 0.00 0.00 3.01
137 138 1.202452 GCCATGGCCTTAGTGCAAATC 60.202 52.381 27.24 0.00 34.56 2.17
138 139 0.826062 GCCATGGCCTTAGTGCAAAT 59.174 50.000 27.24 0.00 34.56 2.32
139 140 0.541530 TGCCATGGCCTTAGTGCAAA 60.542 50.000 33.44 8.21 41.09 3.68
140 141 0.541530 TTGCCATGGCCTTAGTGCAA 60.542 50.000 33.44 15.69 41.09 4.08
141 142 0.966875 CTTGCCATGGCCTTAGTGCA 60.967 55.000 33.44 9.85 41.09 4.57
142 143 0.680921 TCTTGCCATGGCCTTAGTGC 60.681 55.000 33.44 6.83 41.09 4.40
143 144 1.386533 CTCTTGCCATGGCCTTAGTG 58.613 55.000 33.44 22.09 41.09 2.74
144 145 0.257039 CCTCTTGCCATGGCCTTAGT 59.743 55.000 33.44 0.00 41.09 2.24
145 146 0.466922 CCCTCTTGCCATGGCCTTAG 60.467 60.000 33.44 25.32 41.09 2.18
146 147 0.918799 TCCCTCTTGCCATGGCCTTA 60.919 55.000 33.44 17.61 41.09 2.69
147 148 1.803453 TTCCCTCTTGCCATGGCCTT 61.803 55.000 33.44 0.00 41.09 4.35
148 149 1.587522 ATTCCCTCTTGCCATGGCCT 61.588 55.000 33.44 4.33 41.09 5.19
149 150 0.688749 AATTCCCTCTTGCCATGGCC 60.689 55.000 33.44 16.23 41.09 5.36
150 151 0.462789 CAATTCCCTCTTGCCATGGC 59.537 55.000 30.54 30.54 42.35 4.40
151 152 1.856629 ACAATTCCCTCTTGCCATGG 58.143 50.000 7.63 7.63 0.00 3.66
152 153 2.827322 TCAACAATTCCCTCTTGCCATG 59.173 45.455 0.00 0.00 0.00 3.66
153 154 3.173953 TCAACAATTCCCTCTTGCCAT 57.826 42.857 0.00 0.00 0.00 4.40
154 155 2.673775 TCAACAATTCCCTCTTGCCA 57.326 45.000 0.00 0.00 0.00 4.92
155 156 3.321968 ACTTTCAACAATTCCCTCTTGCC 59.678 43.478 0.00 0.00 0.00 4.52
156 157 4.301628 CACTTTCAACAATTCCCTCTTGC 58.698 43.478 0.00 0.00 0.00 4.01
157 158 4.342092 ACCACTTTCAACAATTCCCTCTTG 59.658 41.667 0.00 0.00 0.00 3.02
158 159 4.546674 ACCACTTTCAACAATTCCCTCTT 58.453 39.130 0.00 0.00 0.00 2.85
159 160 4.184649 ACCACTTTCAACAATTCCCTCT 57.815 40.909 0.00 0.00 0.00 3.69
160 161 6.399639 TTTACCACTTTCAACAATTCCCTC 57.600 37.500 0.00 0.00 0.00 4.30
161 162 5.304357 CCTTTACCACTTTCAACAATTCCCT 59.696 40.000 0.00 0.00 0.00 4.20
162 163 5.303333 TCCTTTACCACTTTCAACAATTCCC 59.697 40.000 0.00 0.00 0.00 3.97
163 164 6.399639 TCCTTTACCACTTTCAACAATTCC 57.600 37.500 0.00 0.00 0.00 3.01
164 165 7.657336 TGATCCTTTACCACTTTCAACAATTC 58.343 34.615 0.00 0.00 0.00 2.17
165 166 7.595819 TGATCCTTTACCACTTTCAACAATT 57.404 32.000 0.00 0.00 0.00 2.32
166 167 7.781324 ATGATCCTTTACCACTTTCAACAAT 57.219 32.000 0.00 0.00 0.00 2.71
167 168 7.255801 GGAATGATCCTTTACCACTTTCAACAA 60.256 37.037 0.00 0.00 42.93 2.83
168 169 6.208599 GGAATGATCCTTTACCACTTTCAACA 59.791 38.462 0.00 0.00 42.93 3.33
169 170 6.208599 TGGAATGATCCTTTACCACTTTCAAC 59.791 38.462 0.00 0.00 46.70 3.18
170 171 6.310941 TGGAATGATCCTTTACCACTTTCAA 58.689 36.000 0.00 0.00 46.70 2.69
171 172 5.886609 TGGAATGATCCTTTACCACTTTCA 58.113 37.500 0.00 0.00 46.70 2.69
172 173 6.834168 TTGGAATGATCCTTTACCACTTTC 57.166 37.500 0.00 0.00 46.70 2.62
173 174 7.610580 TTTTGGAATGATCCTTTACCACTTT 57.389 32.000 0.00 0.00 46.70 2.66
174 175 6.295292 GCTTTTGGAATGATCCTTTACCACTT 60.295 38.462 0.00 0.00 46.70 3.16
175 176 5.185828 GCTTTTGGAATGATCCTTTACCACT 59.814 40.000 0.00 0.00 46.70 4.00
176 177 5.410924 GCTTTTGGAATGATCCTTTACCAC 58.589 41.667 0.00 0.00 46.70 4.16
177 178 4.466015 GGCTTTTGGAATGATCCTTTACCA 59.534 41.667 0.00 0.00 46.70 3.25
178 179 4.466015 TGGCTTTTGGAATGATCCTTTACC 59.534 41.667 0.00 0.00 46.70 2.85
179 180 5.659440 TGGCTTTTGGAATGATCCTTTAC 57.341 39.130 0.00 0.00 46.70 2.01
180 181 7.068593 CACTATGGCTTTTGGAATGATCCTTTA 59.931 37.037 0.00 0.00 46.70 1.85
181 182 5.960202 ACTATGGCTTTTGGAATGATCCTTT 59.040 36.000 0.00 0.00 46.70 3.11
182 183 5.361857 CACTATGGCTTTTGGAATGATCCTT 59.638 40.000 0.00 0.00 46.70 3.36
183 184 4.891756 CACTATGGCTTTTGGAATGATCCT 59.108 41.667 0.00 0.00 46.70 3.24
184 185 4.500375 GCACTATGGCTTTTGGAATGATCC 60.500 45.833 0.00 0.00 46.76 3.36
185 186 4.098349 TGCACTATGGCTTTTGGAATGATC 59.902 41.667 0.00 0.00 34.04 2.92
186 187 4.025360 TGCACTATGGCTTTTGGAATGAT 58.975 39.130 0.00 0.00 34.04 2.45
187 188 3.429492 TGCACTATGGCTTTTGGAATGA 58.571 40.909 0.00 0.00 34.04 2.57
188 189 3.872511 TGCACTATGGCTTTTGGAATG 57.127 42.857 0.00 0.00 34.04 2.67
189 190 4.888326 TTTGCACTATGGCTTTTGGAAT 57.112 36.364 0.00 0.00 34.04 3.01
190 191 4.888326 ATTTGCACTATGGCTTTTGGAA 57.112 36.364 0.00 0.00 34.04 3.53
191 192 4.888326 AATTTGCACTATGGCTTTTGGA 57.112 36.364 0.00 0.00 34.04 3.53
192 193 4.996122 TGAAATTTGCACTATGGCTTTTGG 59.004 37.500 0.00 0.00 34.04 3.28
193 194 6.542574 TTGAAATTTGCACTATGGCTTTTG 57.457 33.333 0.00 0.00 34.04 2.44
194 195 6.991531 TCTTTGAAATTTGCACTATGGCTTTT 59.008 30.769 0.00 0.00 34.04 2.27
195 196 6.523840 TCTTTGAAATTTGCACTATGGCTTT 58.476 32.000 0.00 0.00 34.04 3.51
196 197 6.015180 TCTCTTTGAAATTTGCACTATGGCTT 60.015 34.615 0.00 0.00 34.04 4.35
197 198 5.477984 TCTCTTTGAAATTTGCACTATGGCT 59.522 36.000 0.00 0.00 34.04 4.75
198 199 5.713025 TCTCTTTGAAATTTGCACTATGGC 58.287 37.500 0.00 0.00 0.00 4.40
199 200 8.767478 AAATCTCTTTGAAATTTGCACTATGG 57.233 30.769 0.00 0.00 0.00 2.74
201 202 9.985730 TGAAAATCTCTTTGAAATTTGCACTAT 57.014 25.926 0.00 0.00 0.00 2.12
202 203 9.814899 TTGAAAATCTCTTTGAAATTTGCACTA 57.185 25.926 0.00 0.00 29.64 2.74
203 204 8.721019 TTGAAAATCTCTTTGAAATTTGCACT 57.279 26.923 0.00 0.00 29.64 4.40
204 205 9.771915 TTTTGAAAATCTCTTTGAAATTTGCAC 57.228 25.926 0.00 0.00 29.64 4.57
205 206 9.991388 CTTTTGAAAATCTCTTTGAAATTTGCA 57.009 25.926 0.00 0.00 0.00 4.08
206 207 9.442033 CCTTTTGAAAATCTCTTTGAAATTTGC 57.558 29.630 0.00 0.00 0.00 3.68
207 208 9.442033 GCCTTTTGAAAATCTCTTTGAAATTTG 57.558 29.630 0.00 0.00 0.00 2.32
208 209 9.176460 TGCCTTTTGAAAATCTCTTTGAAATTT 57.824 25.926 0.00 0.00 0.00 1.82
209 210 8.735692 TGCCTTTTGAAAATCTCTTTGAAATT 57.264 26.923 0.00 0.00 0.00 1.82
210 211 8.913487 ATGCCTTTTGAAAATCTCTTTGAAAT 57.087 26.923 0.00 0.00 0.00 2.17
211 212 8.735692 AATGCCTTTTGAAAATCTCTTTGAAA 57.264 26.923 0.00 0.00 0.00 2.69
212 213 8.735692 AAATGCCTTTTGAAAATCTCTTTGAA 57.264 26.923 0.00 0.00 0.00 2.69
213 214 8.735692 AAAATGCCTTTTGAAAATCTCTTTGA 57.264 26.923 0.00 0.00 33.33 2.69
214 215 9.442033 GAAAAATGCCTTTTGAAAATCTCTTTG 57.558 29.630 0.16 0.00 37.36 2.77
215 216 9.399797 AGAAAAATGCCTTTTGAAAATCTCTTT 57.600 25.926 0.16 0.00 37.36 2.52
216 217 8.969260 AGAAAAATGCCTTTTGAAAATCTCTT 57.031 26.923 0.16 0.00 37.36 2.85
217 218 8.206189 TGAGAAAAATGCCTTTTGAAAATCTCT 58.794 29.630 18.46 9.64 37.36 3.10
218 219 8.369218 TGAGAAAAATGCCTTTTGAAAATCTC 57.631 30.769 14.16 14.16 37.36 2.75
219 220 8.735692 TTGAGAAAAATGCCTTTTGAAAATCT 57.264 26.923 0.16 0.00 37.36 2.40
220 221 8.615211 ACTTGAGAAAAATGCCTTTTGAAAATC 58.385 29.630 0.16 0.00 37.36 2.17
221 222 8.400186 CACTTGAGAAAAATGCCTTTTGAAAAT 58.600 29.630 0.16 0.00 37.36 1.82
222 223 7.605691 TCACTTGAGAAAAATGCCTTTTGAAAA 59.394 29.630 0.16 0.00 37.36 2.29
223 224 7.102346 TCACTTGAGAAAAATGCCTTTTGAAA 58.898 30.769 0.16 0.00 37.36 2.69
224 225 6.638610 TCACTTGAGAAAAATGCCTTTTGAA 58.361 32.000 0.16 0.00 37.36 2.69
225 226 6.219417 TCACTTGAGAAAAATGCCTTTTGA 57.781 33.333 0.16 0.00 37.36 2.69
226 227 6.907206 TTCACTTGAGAAAAATGCCTTTTG 57.093 33.333 0.16 0.00 37.36 2.44
227 228 7.607607 ACTTTTCACTTGAGAAAAATGCCTTTT 59.392 29.630 7.22 0.00 44.27 2.27
228 229 7.105588 ACTTTTCACTTGAGAAAAATGCCTTT 58.894 30.769 7.22 0.00 44.27 3.11
229 230 6.643388 ACTTTTCACTTGAGAAAAATGCCTT 58.357 32.000 7.22 0.00 44.27 4.35
230 231 6.225981 ACTTTTCACTTGAGAAAAATGCCT 57.774 33.333 7.22 0.00 44.27 4.75
231 232 8.593492 AATACTTTTCACTTGAGAAAAATGCC 57.407 30.769 7.22 0.00 44.27 4.40
238 239 9.787532 CAAGACAAAATACTTTTCACTTGAGAA 57.212 29.630 15.32 0.00 40.80 2.87
239 240 9.173021 TCAAGACAAAATACTTTTCACTTGAGA 57.827 29.630 17.20 6.26 41.39 3.27
241 242 8.956426 ACTCAAGACAAAATACTTTTCACTTGA 58.044 29.630 18.58 18.58 42.50 3.02
242 243 9.226345 GACTCAAGACAAAATACTTTTCACTTG 57.774 33.333 14.77 14.77 40.32 3.16
243 244 8.956426 TGACTCAAGACAAAATACTTTTCACTT 58.044 29.630 0.00 0.00 0.00 3.16
244 245 8.506168 TGACTCAAGACAAAATACTTTTCACT 57.494 30.769 0.00 0.00 0.00 3.41
245 246 9.567848 TTTGACTCAAGACAAAATACTTTTCAC 57.432 29.630 5.40 0.00 36.92 3.18
255 256 8.878769 GCCTTTTTATTTTGACTCAAGACAAAA 58.121 29.630 17.97 17.97 46.95 2.44
256 257 8.037758 TGCCTTTTTATTTTGACTCAAGACAAA 58.962 29.630 4.00 4.00 37.76 2.83
257 258 7.551585 TGCCTTTTTATTTTGACTCAAGACAA 58.448 30.769 0.00 0.00 0.00 3.18
258 259 7.106439 TGCCTTTTTATTTTGACTCAAGACA 57.894 32.000 0.00 0.00 0.00 3.41
259 260 7.169813 CCTTGCCTTTTTATTTTGACTCAAGAC 59.830 37.037 0.00 0.00 31.61 3.01
260 261 7.069331 TCCTTGCCTTTTTATTTTGACTCAAGA 59.931 33.333 0.00 0.00 31.61 3.02
261 262 7.169813 GTCCTTGCCTTTTTATTTTGACTCAAG 59.830 37.037 0.00 0.00 0.00 3.02
262 263 6.983890 GTCCTTGCCTTTTTATTTTGACTCAA 59.016 34.615 0.00 0.00 0.00 3.02
263 264 6.462347 GGTCCTTGCCTTTTTATTTTGACTCA 60.462 38.462 0.00 0.00 0.00 3.41
264 265 5.926542 GGTCCTTGCCTTTTTATTTTGACTC 59.073 40.000 0.00 0.00 0.00 3.36
265 266 5.602561 AGGTCCTTGCCTTTTTATTTTGACT 59.397 36.000 0.00 0.00 34.71 3.41
266 267 5.853936 AGGTCCTTGCCTTTTTATTTTGAC 58.146 37.500 0.00 0.00 34.71 3.18
267 268 5.011635 GGAGGTCCTTGCCTTTTTATTTTGA 59.988 40.000 0.00 0.00 39.34 2.69
268 269 5.221621 TGGAGGTCCTTGCCTTTTTATTTTG 60.222 40.000 0.00 0.00 39.34 2.44
269 270 4.904853 TGGAGGTCCTTGCCTTTTTATTTT 59.095 37.500 0.00 0.00 39.34 1.82
270 271 4.488770 TGGAGGTCCTTGCCTTTTTATTT 58.511 39.130 0.00 0.00 39.34 1.40
271 272 4.126520 TGGAGGTCCTTGCCTTTTTATT 57.873 40.909 0.00 0.00 39.34 1.40
272 273 3.825908 TGGAGGTCCTTGCCTTTTTAT 57.174 42.857 0.00 0.00 39.34 1.40
273 274 3.139397 TCTTGGAGGTCCTTGCCTTTTTA 59.861 43.478 0.00 0.00 39.34 1.52
274 275 2.091333 TCTTGGAGGTCCTTGCCTTTTT 60.091 45.455 0.00 0.00 39.34 1.94
275 276 1.499007 TCTTGGAGGTCCTTGCCTTTT 59.501 47.619 0.00 0.00 39.34 2.27
276 277 1.149101 TCTTGGAGGTCCTTGCCTTT 58.851 50.000 0.00 0.00 39.34 3.11
277 278 0.402121 GTCTTGGAGGTCCTTGCCTT 59.598 55.000 0.00 0.00 39.34 4.35
278 279 1.492993 GGTCTTGGAGGTCCTTGCCT 61.493 60.000 0.00 0.00 42.53 4.75
279 280 1.002011 GGTCTTGGAGGTCCTTGCC 60.002 63.158 0.00 0.00 36.82 4.52
280 281 0.110486 TTGGTCTTGGAGGTCCTTGC 59.890 55.000 0.00 0.00 36.82 4.01
281 282 2.656947 TTTGGTCTTGGAGGTCCTTG 57.343 50.000 0.00 0.00 36.82 3.61
282 283 2.753168 GCTTTTGGTCTTGGAGGTCCTT 60.753 50.000 0.00 0.00 36.82 3.36
283 284 1.202940 GCTTTTGGTCTTGGAGGTCCT 60.203 52.381 0.00 0.00 36.82 3.85
284 285 1.248486 GCTTTTGGTCTTGGAGGTCC 58.752 55.000 0.00 0.00 0.00 4.46
285 286 1.981256 TGCTTTTGGTCTTGGAGGTC 58.019 50.000 0.00 0.00 0.00 3.85
286 287 2.310538 CTTGCTTTTGGTCTTGGAGGT 58.689 47.619 0.00 0.00 0.00 3.85
287 288 2.294512 GACTTGCTTTTGGTCTTGGAGG 59.705 50.000 0.00 0.00 0.00 4.30
288 289 3.217626 AGACTTGCTTTTGGTCTTGGAG 58.782 45.455 0.00 0.00 37.04 3.86
289 290 3.297134 AGACTTGCTTTTGGTCTTGGA 57.703 42.857 0.00 0.00 37.04 3.53
292 293 2.695147 CCCAAGACTTGCTTTTGGTCTT 59.305 45.455 9.85 0.00 46.89 3.01
293 294 2.310538 CCCAAGACTTGCTTTTGGTCT 58.689 47.619 9.85 0.00 39.74 3.85
294 295 2.031870 ACCCAAGACTTGCTTTTGGTC 58.968 47.619 9.85 0.00 39.74 4.02
295 296 1.756538 CACCCAAGACTTGCTTTTGGT 59.243 47.619 9.85 8.30 39.74 3.67
296 297 2.031120 TCACCCAAGACTTGCTTTTGG 58.969 47.619 9.85 7.67 40.79 3.28
297 298 3.799281 TTCACCCAAGACTTGCTTTTG 57.201 42.857 9.85 3.89 33.60 2.44
298 299 3.321968 GGATTCACCCAAGACTTGCTTTT 59.678 43.478 9.85 0.00 33.60 2.27
299 300 2.893489 GGATTCACCCAAGACTTGCTTT 59.107 45.455 9.85 0.00 33.60 3.51
300 301 2.158475 TGGATTCACCCAAGACTTGCTT 60.158 45.455 9.85 0.00 38.00 3.91
301 302 1.425066 TGGATTCACCCAAGACTTGCT 59.575 47.619 9.85 0.00 38.00 3.91
302 303 1.909700 TGGATTCACCCAAGACTTGC 58.090 50.000 9.85 0.00 38.00 4.01
303 304 4.935352 TTTTGGATTCACCCAAGACTTG 57.065 40.909 8.31 8.31 45.89 3.16
304 305 7.797121 ATTATTTTGGATTCACCCAAGACTT 57.203 32.000 0.00 0.00 45.89 3.01
305 306 8.893563 TTATTATTTTGGATTCACCCAAGACT 57.106 30.769 0.00 0.00 45.89 3.24
353 354 8.981659 CCAAAGAAACCTCCCTTTCAATATATT 58.018 33.333 0.00 0.00 33.26 1.28
354 355 8.343787 TCCAAAGAAACCTCCCTTTCAATATAT 58.656 33.333 0.00 0.00 33.26 0.86
355 356 7.704727 TCCAAAGAAACCTCCCTTTCAATATA 58.295 34.615 0.00 0.00 33.26 0.86
356 357 6.561294 TCCAAAGAAACCTCCCTTTCAATAT 58.439 36.000 0.00 0.00 33.26 1.28
357 358 5.959512 TCCAAAGAAACCTCCCTTTCAATA 58.040 37.500 0.00 0.00 33.26 1.90
358 359 4.814967 TCCAAAGAAACCTCCCTTTCAAT 58.185 39.130 0.00 0.00 33.26 2.57
359 360 4.258457 TCCAAAGAAACCTCCCTTTCAA 57.742 40.909 0.00 0.00 33.26 2.69
360 361 3.963476 TCCAAAGAAACCTCCCTTTCA 57.037 42.857 0.00 0.00 33.26 2.69
361 362 4.470602 TCTTCCAAAGAAACCTCCCTTTC 58.529 43.478 0.00 0.00 33.83 2.62
362 363 4.536295 TCTTCCAAAGAAACCTCCCTTT 57.464 40.909 0.00 0.00 33.83 3.11
363 364 4.536295 TTCTTCCAAAGAAACCTCCCTT 57.464 40.909 0.00 0.00 44.10 3.95
384 385 8.262601 ACTTGAGGGAGGTGATTTAAATTTTT 57.737 30.769 1.43 0.00 0.00 1.94
385 386 7.508977 TGACTTGAGGGAGGTGATTTAAATTTT 59.491 33.333 1.43 0.00 0.00 1.82
386 387 7.010160 TGACTTGAGGGAGGTGATTTAAATTT 58.990 34.615 1.43 0.00 0.00 1.82
387 388 6.552008 TGACTTGAGGGAGGTGATTTAAATT 58.448 36.000 1.43 0.00 0.00 1.82
388 389 6.139679 TGACTTGAGGGAGGTGATTTAAAT 57.860 37.500 0.00 0.00 0.00 1.40
389 390 5.576563 TGACTTGAGGGAGGTGATTTAAA 57.423 39.130 0.00 0.00 0.00 1.52
390 391 5.576563 TTGACTTGAGGGAGGTGATTTAA 57.423 39.130 0.00 0.00 0.00 1.52
391 392 5.576563 TTTGACTTGAGGGAGGTGATTTA 57.423 39.130 0.00 0.00 0.00 1.40
392 393 4.453480 TTTGACTTGAGGGAGGTGATTT 57.547 40.909 0.00 0.00 0.00 2.17
393 394 4.664688 ATTTGACTTGAGGGAGGTGATT 57.335 40.909 0.00 0.00 0.00 2.57
394 395 5.779241 TTATTTGACTTGAGGGAGGTGAT 57.221 39.130 0.00 0.00 0.00 3.06
395 396 5.576563 TTTATTTGACTTGAGGGAGGTGA 57.423 39.130 0.00 0.00 0.00 4.02
396 397 6.660949 AGATTTTATTTGACTTGAGGGAGGTG 59.339 38.462 0.00 0.00 0.00 4.00
397 398 6.794534 AGATTTTATTTGACTTGAGGGAGGT 58.205 36.000 0.00 0.00 0.00 3.85
398 399 7.709149 AAGATTTTATTTGACTTGAGGGAGG 57.291 36.000 0.00 0.00 0.00 4.30
399 400 9.415544 CAAAAGATTTTATTTGACTTGAGGGAG 57.584 33.333 0.00 0.00 38.50 4.30
400 401 9.142014 TCAAAAGATTTTATTTGACTTGAGGGA 57.858 29.630 0.00 0.00 39.81 4.20
401 402 9.762933 TTCAAAAGATTTTATTTGACTTGAGGG 57.237 29.630 0.78 0.00 43.20 4.30
433 434 6.145371 CGAGGTGACACCCAAAATTTTATTTG 59.855 38.462 21.32 3.53 39.75 2.32
434 435 6.220201 CGAGGTGACACCCAAAATTTTATTT 58.780 36.000 21.32 0.00 39.75 1.40
435 436 5.279256 CCGAGGTGACACCCAAAATTTTATT 60.279 40.000 21.32 0.00 39.75 1.40
436 437 4.219725 CCGAGGTGACACCCAAAATTTTAT 59.780 41.667 21.32 0.00 39.75 1.40
437 438 3.570550 CCGAGGTGACACCCAAAATTTTA 59.429 43.478 21.32 0.00 39.75 1.52
438 439 2.364002 CCGAGGTGACACCCAAAATTTT 59.636 45.455 21.32 0.00 39.75 1.82
439 440 1.960689 CCGAGGTGACACCCAAAATTT 59.039 47.619 21.32 0.00 39.75 1.82
440 441 1.616159 CCGAGGTGACACCCAAAATT 58.384 50.000 21.32 0.68 39.75 1.82
441 442 0.893727 GCCGAGGTGACACCCAAAAT 60.894 55.000 21.32 1.51 39.75 1.82
442 443 1.527380 GCCGAGGTGACACCCAAAA 60.527 57.895 21.32 0.00 39.75 2.44
443 444 2.112297 GCCGAGGTGACACCCAAA 59.888 61.111 21.32 0.00 39.75 3.28
444 445 3.948719 GGCCGAGGTGACACCCAA 61.949 66.667 21.32 0.00 39.75 4.12
448 449 4.736896 GTCGGGCCGAGGTGACAC 62.737 72.222 31.98 12.88 36.23 3.67
517 518 1.748493 GCAGACATCCGAAGAGAGAGT 59.252 52.381 0.00 0.00 0.00 3.24
862 877 3.849911 CACCATGATACGTCTGAACAGT 58.150 45.455 0.00 0.00 0.00 3.55
865 880 2.893637 AGCACCATGATACGTCTGAAC 58.106 47.619 0.00 0.00 0.00 3.18
892 907 2.969821 TCAAGCCACTGGGTGTAAAT 57.030 45.000 0.00 0.00 36.17 1.40
958 973 3.390135 CCAGAAACTCAGACGCAAACTA 58.610 45.455 0.00 0.00 0.00 2.24
966 981 2.635427 AGGAAGACCCAGAAACTCAGAC 59.365 50.000 0.00 0.00 37.41 3.51
1059 1074 0.390340 GAGCATGCTCCTGACGAACA 60.390 55.000 33.31 0.00 37.11 3.18
1086 1101 7.726033 AAAGTCATCAATAGTAGAGTCACCT 57.274 36.000 0.00 0.00 0.00 4.00
1099 1114 8.362639 AGAACTTTGTGCATAAAAGTCATCAAT 58.637 29.630 23.07 11.80 44.93 2.57
1119 1134 0.462759 GGCGCCAGATAGCAGAACTT 60.463 55.000 24.80 0.00 34.54 2.66
1729 1744 2.689658 CCATGGGGATGTACCTGACTA 58.310 52.381 2.85 0.00 38.98 2.59
1993 2014 3.070159 TCCTGGACAGAACAAGAGTCAAG 59.930 47.826 0.00 0.00 33.94 3.02
2087 2108 2.875094 AGCAGAAGGAACATGAAGCT 57.125 45.000 0.00 0.00 0.00 3.74
2107 2128 2.463589 GAACTGGCGATGGTGGTGGA 62.464 60.000 0.00 0.00 0.00 4.02
2208 2244 6.159988 CAGAAGACCTCGACAAACTAAAGAT 58.840 40.000 0.00 0.00 0.00 2.40
2218 2254 0.898789 GACCCCAGAAGACCTCGACA 60.899 60.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.