Multiple sequence alignment - TraesCS5B01G572100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G572100 chr5B 100.000 2033 0 0 1 2033 712874846 712872814 0.000000e+00 3755.0
1 TraesCS5B01G572100 chr5B 85.566 769 88 10 7 753 712890107 712889340 0.000000e+00 784.0
2 TraesCS5B01G572100 chr5B 85.171 789 87 15 10 773 711715412 711714629 0.000000e+00 782.0
3 TraesCS5B01G572100 chr5B 79.664 536 69 19 898 1412 712884261 712883745 1.520000e-92 350.0
4 TraesCS5B01G572100 chr5B 100.000 63 0 0 2598 2660 712872249 712872187 1.670000e-22 117.0
5 TraesCS5B01G572100 chr5D 89.486 875 38 27 878 1734 562413132 562412294 0.000000e+00 1057.0
6 TraesCS5B01G572100 chr5D 86.819 789 79 7 7 772 562488156 562487370 0.000000e+00 857.0
7 TraesCS5B01G572100 chr5D 86.819 789 79 7 7 772 562531001 562530215 0.000000e+00 857.0
8 TraesCS5B01G572100 chr5D 84.286 770 96 7 7 753 562431671 562430904 0.000000e+00 728.0
9 TraesCS5B01G572100 chr5D 87.267 644 56 6 154 773 562414455 562413814 0.000000e+00 712.0
10 TraesCS5B01G572100 chr5D 90.278 72 3 3 1896 1966 526611618 526611686 1.010000e-14 91.6
11 TraesCS5B01G572100 chr5D 90.909 55 5 0 1042 1096 561805532 561805478 1.020000e-09 75.0
12 TraesCS5B01G572100 chr7B 87.215 790 75 7 7 773 229193 229979 0.000000e+00 876.0
13 TraesCS5B01G572100 chr7B 86.752 785 81 10 7 769 128635 129418 0.000000e+00 852.0
14 TraesCS5B01G572100 chr7B 85.359 765 85 13 7 747 222525 223286 0.000000e+00 767.0
15 TraesCS5B01G572100 chr7B 84.722 792 92 14 7 773 1154294 1155081 0.000000e+00 765.0
16 TraesCS5B01G572100 chr7B 86.799 553 28 15 874 1415 230514 231032 2.300000e-160 575.0
17 TraesCS5B01G572100 chr7B 90.572 297 14 8 1444 1731 231028 231319 5.370000e-102 381.0
18 TraesCS5B01G572100 chr7B 80.777 489 62 18 937 1412 224406 224875 1.170000e-93 353.0
19 TraesCS5B01G572100 chr7B 87.838 74 8 1 1890 1962 745245543 745245616 4.720000e-13 86.1
20 TraesCS5B01G572100 chr7B 89.655 58 6 0 1039 1096 1019224 1019281 1.020000e-09 75.0
21 TraesCS5B01G572100 chr4A 93.151 73 3 2 1896 1966 584075367 584075439 3.620000e-19 106.0
22 TraesCS5B01G572100 chr1D 90.244 82 6 2 1896 1976 270220685 270220765 3.620000e-19 106.0
23 TraesCS5B01G572100 chr6A 91.304 69 5 1 1898 1965 586845788 586845856 2.820000e-15 93.5
24 TraesCS5B01G572100 chr7D 90.278 72 4 3 1896 1966 7206204 7206135 1.010000e-14 91.6
25 TraesCS5B01G572100 chr4D 90.141 71 4 3 1898 1966 404670176 404670245 3.650000e-14 89.8
26 TraesCS5B01G572100 chr2D 87.500 80 5 5 1891 1966 614645583 614645661 1.310000e-13 87.9
27 TraesCS5B01G572100 chr3B 90.769 65 5 1 1898 1962 825581896 825581959 4.720000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G572100 chr5B 712872187 712874846 2659 True 1936.000000 3755 100.000000 1 2660 2 chr5B.!!$R4 2659
1 TraesCS5B01G572100 chr5B 712889340 712890107 767 True 784.000000 784 85.566000 7 753 1 chr5B.!!$R3 746
2 TraesCS5B01G572100 chr5B 711714629 711715412 783 True 782.000000 782 85.171000 10 773 1 chr5B.!!$R1 763
3 TraesCS5B01G572100 chr5B 712883745 712884261 516 True 350.000000 350 79.664000 898 1412 1 chr5B.!!$R2 514
4 TraesCS5B01G572100 chr5D 562412294 562414455 2161 True 884.500000 1057 88.376500 154 1734 2 chr5D.!!$R5 1580
5 TraesCS5B01G572100 chr5D 562487370 562488156 786 True 857.000000 857 86.819000 7 772 1 chr5D.!!$R3 765
6 TraesCS5B01G572100 chr5D 562530215 562531001 786 True 857.000000 857 86.819000 7 772 1 chr5D.!!$R4 765
7 TraesCS5B01G572100 chr5D 562430904 562431671 767 True 728.000000 728 84.286000 7 753 1 chr5D.!!$R2 746
8 TraesCS5B01G572100 chr7B 128635 129418 783 False 852.000000 852 86.752000 7 769 1 chr7B.!!$F1 762
9 TraesCS5B01G572100 chr7B 1154294 1155081 787 False 765.000000 765 84.722000 7 773 1 chr7B.!!$F3 766
10 TraesCS5B01G572100 chr7B 229193 231319 2126 False 610.666667 876 88.195333 7 1731 3 chr7B.!!$F6 1724
11 TraesCS5B01G572100 chr7B 222525 224875 2350 False 560.000000 767 83.068000 7 1412 2 chr7B.!!$F5 1405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 2061 0.03582 TCCTCCGGCAAACCATGTAC 60.036 55.0 0.0 0.0 34.57 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 3827 0.034896 CCGACTGCAAACACCTACCT 59.965 55.0 0.0 0.0 0.0 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 166 3.505773 GCCTCATGGGGCCATCCT 61.506 66.667 27.43 0.00 45.92 3.24
213 216 1.376466 GAGGAGCTCAACCTTGGCA 59.624 57.895 17.19 0.00 37.93 4.92
237 240 4.022589 CCAACAGCTTTCACAACATCTCAT 60.023 41.667 0.00 0.00 0.00 2.90
240 243 3.754850 CAGCTTTCACAACATCTCATGGA 59.245 43.478 0.00 0.00 33.60 3.41
269 273 2.115052 TTGCGTGGGTGCCAGAAT 59.885 55.556 0.00 0.00 32.34 2.40
272 276 1.675641 GCGTGGGTGCCAGAATCTT 60.676 57.895 0.00 0.00 32.34 2.40
278 282 1.282157 GGGTGCCAGAATCTTACCACT 59.718 52.381 9.41 0.00 33.10 4.00
308 312 2.558359 CACCAAGAATTTCAGGGGTGAC 59.442 50.000 20.56 0.00 46.67 3.67
331 335 1.670967 GCTACCCGGCGATGGTATTAC 60.671 57.143 9.30 1.72 37.70 1.89
347 351 4.224370 GGTATTACTGGTGGGTTCAAGAGA 59.776 45.833 0.00 0.00 0.00 3.10
350 354 2.127708 ACTGGTGGGTTCAAGAGACTT 58.872 47.619 0.00 0.00 0.00 3.01
357 361 2.104963 GGGTTCAAGAGACTTGAGGTGT 59.895 50.000 12.73 0.00 0.00 4.16
360 364 4.192317 GTTCAAGAGACTTGAGGTGTTGT 58.808 43.478 12.73 0.00 0.00 3.32
371 375 0.923358 AGGTGTTGTCCCTTGGTGAA 59.077 50.000 0.00 0.00 0.00 3.18
387 391 1.203441 TGAATGTGCTCTCAGGGGCT 61.203 55.000 0.00 0.00 0.00 5.19
393 397 2.911926 GCTCTCAGGGGCTGGGTTT 61.912 63.158 0.00 0.00 33.01 3.27
395 399 1.463214 TCTCAGGGGCTGGGTTTCA 60.463 57.895 0.00 0.00 33.01 2.69
428 432 5.415701 GTCTCAATGCAAGAAAATGGAGGTA 59.584 40.000 0.00 0.00 0.00 3.08
439 443 7.219484 AGAAAATGGAGGTACTTGATTTGTG 57.781 36.000 0.00 0.00 41.55 3.33
500 504 2.040278 TGAGCTTCACCACCTTTGCTAT 59.960 45.455 0.00 0.00 0.00 2.97
548 553 1.145803 GCGACGCACCTAAGAGTTTT 58.854 50.000 16.42 0.00 0.00 2.43
552 557 0.165944 CGCACCTAAGAGTTTTGGCG 59.834 55.000 0.00 0.00 33.14 5.69
600 626 8.620416 GTTTTCACTAACATGCCATCATATGTA 58.380 33.333 1.90 0.00 36.56 2.29
639 665 2.144833 TTGGACGGCGACTTAGCGAA 62.145 55.000 16.62 0.00 38.18 4.70
660 686 4.927267 ACTCCCAAATGTCATAACAGGA 57.073 40.909 0.00 0.00 39.20 3.86
671 697 4.578516 TGTCATAACAGGAACCAACAACTG 59.421 41.667 0.00 0.00 37.01 3.16
680 706 3.489059 GGAACCAACAACTGTGTGACATG 60.489 47.826 0.00 0.00 38.27 3.21
717 743 1.931172 GTATCCGGGAATGACAACACG 59.069 52.381 0.00 1.50 0.00 4.49
732 758 3.456644 ACAACACGGTCATATATGGGGAA 59.543 43.478 12.78 0.00 0.00 3.97
733 759 4.104102 ACAACACGGTCATATATGGGGAAT 59.896 41.667 12.78 0.00 0.00 3.01
734 760 4.286297 ACACGGTCATATATGGGGAATG 57.714 45.455 12.78 7.82 0.00 2.67
769 795 2.812011 GGGAACAACCATGCCGTATATC 59.188 50.000 0.00 0.00 41.20 1.63
790 1807 2.505982 GGCGAGGAGGCAAGCATA 59.494 61.111 0.00 0.00 45.92 3.14
791 1808 1.072159 GGCGAGGAGGCAAGCATAT 59.928 57.895 0.00 0.00 45.92 1.78
839 1856 3.420839 CCTCGATGGGCAATTACAAAC 57.579 47.619 0.00 0.00 0.00 2.93
841 1858 2.752354 CTCGATGGGCAATTACAAACCA 59.248 45.455 0.00 0.00 35.39 3.67
842 1859 3.360867 TCGATGGGCAATTACAAACCAT 58.639 40.909 0.00 0.00 44.16 3.55
846 1863 4.046286 TGGGCAATTACAAACCATCTCT 57.954 40.909 0.00 0.00 0.00 3.10
847 1864 3.763360 TGGGCAATTACAAACCATCTCTG 59.237 43.478 0.00 0.00 0.00 3.35
848 1865 3.429410 GGGCAATTACAAACCATCTCTGC 60.429 47.826 0.00 0.00 0.00 4.26
849 1866 3.445096 GGCAATTACAAACCATCTCTGCT 59.555 43.478 0.00 0.00 0.00 4.24
851 1868 4.156556 GCAATTACAAACCATCTCTGCTGA 59.843 41.667 0.00 0.00 0.00 4.26
852 1869 5.675575 GCAATTACAAACCATCTCTGCTGAG 60.676 44.000 14.07 14.07 41.51 3.35
854 1871 1.701847 ACAAACCATCTCTGCTGAGGT 59.298 47.619 19.23 10.69 40.58 3.85
874 1898 8.172352 TGAGGTTTGCTTTATACTTTGCTTTA 57.828 30.769 0.00 0.00 0.00 1.85
875 1899 8.802267 TGAGGTTTGCTTTATACTTTGCTTTAT 58.198 29.630 0.00 0.00 0.00 1.40
906 1972 6.036191 GTCCACGTCTTGAATATTCTTCTTCC 59.964 42.308 16.24 0.00 0.00 3.46
925 2057 1.915078 CTCCTCCTCCGGCAAACCAT 61.915 60.000 0.00 0.00 34.57 3.55
926 2058 1.750399 CCTCCTCCGGCAAACCATG 60.750 63.158 0.00 0.00 34.57 3.66
927 2059 1.002134 CTCCTCCGGCAAACCATGT 60.002 57.895 0.00 0.00 34.57 3.21
928 2060 0.251916 CTCCTCCGGCAAACCATGTA 59.748 55.000 0.00 0.00 34.57 2.29
929 2061 0.035820 TCCTCCGGCAAACCATGTAC 60.036 55.000 0.00 0.00 34.57 2.90
930 2062 0.322098 CCTCCGGCAAACCATGTACA 60.322 55.000 0.00 0.00 34.57 2.90
931 2063 1.681780 CCTCCGGCAAACCATGTACAT 60.682 52.381 1.41 1.41 34.57 2.29
932 2064 2.091541 CTCCGGCAAACCATGTACATT 58.908 47.619 5.37 0.00 34.57 2.71
974 2118 6.813649 TCATAAGTATTTCATATGAGCTCCGC 59.186 38.462 12.15 0.00 33.58 5.54
1037 2181 2.670934 AGAAACAGCAGCGGCAGG 60.671 61.111 12.44 5.23 44.61 4.85
1045 2205 4.154347 CAGCGGCAGGAGGAGGTC 62.154 72.222 1.45 0.00 0.00 3.85
1174 2334 4.116328 TCTTCGTCGCCTGGCTCG 62.116 66.667 17.92 19.79 0.00 5.03
1228 2400 3.157949 CCTTCTCCCTCTCCGGCC 61.158 72.222 0.00 0.00 0.00 6.13
1410 2582 2.947652 CAACATGACCACCATCTCCATC 59.052 50.000 0.00 0.00 31.94 3.51
1411 2583 1.139654 ACATGACCACCATCTCCATCG 59.860 52.381 0.00 0.00 31.94 3.84
1412 2584 0.107456 ATGACCACCATCTCCATCGC 59.893 55.000 0.00 0.00 0.00 4.58
1413 2585 1.227674 GACCACCATCTCCATCGCC 60.228 63.158 0.00 0.00 0.00 5.54
1414 2586 2.280389 CCACCATCTCCATCGCCG 60.280 66.667 0.00 0.00 0.00 6.46
1415 2587 2.280389 CACCATCTCCATCGCCGG 60.280 66.667 0.00 0.00 0.00 6.13
1416 2588 4.241555 ACCATCTCCATCGCCGGC 62.242 66.667 19.07 19.07 0.00 6.13
1418 2590 4.592192 CATCTCCATCGCCGGCGT 62.592 66.667 44.16 30.06 40.74 5.68
1419 2591 4.592192 ATCTCCATCGCCGGCGTG 62.592 66.667 44.16 36.79 40.74 5.34
1543 2748 2.504244 GCGTCCGGTTCAGAGTCG 60.504 66.667 0.00 0.00 0.00 4.18
1548 2753 2.651361 CGGTTCAGAGTCGCCAGT 59.349 61.111 0.00 0.00 0.00 4.00
1665 2876 5.237815 TGCGACAGATACTTGTGAATTCTT 58.762 37.500 7.05 0.00 0.00 2.52
1666 2877 5.348724 TGCGACAGATACTTGTGAATTCTTC 59.651 40.000 7.05 0.90 0.00 2.87
1667 2878 5.578727 GCGACAGATACTTGTGAATTCTTCT 59.421 40.000 7.05 0.00 0.00 2.85
1681 2892 8.096414 TGTGAATTCTTCTCATGACTCATTACA 58.904 33.333 7.05 0.00 0.00 2.41
1682 2893 8.939929 GTGAATTCTTCTCATGACTCATTACAA 58.060 33.333 7.05 0.00 0.00 2.41
1683 2894 9.676861 TGAATTCTTCTCATGACTCATTACAAT 57.323 29.630 7.05 0.00 0.00 2.71
1720 2937 6.287589 AGTAGAGTAGATTGTTGTTGGAGG 57.712 41.667 0.00 0.00 0.00 4.30
1727 2944 1.790755 TTGTTGTTGGAGGTCGATCG 58.209 50.000 9.36 9.36 0.00 3.69
1731 2948 2.293677 TGTTGGAGGTCGATCGATTG 57.706 50.000 22.50 6.28 0.00 2.67
1734 2951 2.293677 TGGAGGTCGATCGATTGTTG 57.706 50.000 22.50 0.00 0.00 3.33
1735 2952 1.548719 TGGAGGTCGATCGATTGTTGT 59.451 47.619 22.50 2.36 0.00 3.32
1736 2953 2.194271 GGAGGTCGATCGATTGTTGTC 58.806 52.381 22.50 11.13 0.00 3.18
1737 2954 2.194271 GAGGTCGATCGATTGTTGTCC 58.806 52.381 22.50 15.35 0.00 4.02
1738 2955 0.921347 GGTCGATCGATTGTTGTCCG 59.079 55.000 22.50 3.41 0.00 4.79
1739 2956 1.468565 GGTCGATCGATTGTTGTCCGA 60.469 52.381 22.50 5.82 36.72 4.55
1740 2957 1.582502 GTCGATCGATTGTTGTCCGAC 59.417 52.381 22.50 14.95 38.17 4.79
1741 2958 0.921347 CGATCGATTGTTGTCCGACC 59.079 55.000 10.26 0.00 35.02 4.79
1742 2959 1.734377 CGATCGATTGTTGTCCGACCA 60.734 52.381 10.26 0.00 35.02 4.02
1743 2960 2.550978 GATCGATTGTTGTCCGACCAT 58.449 47.619 0.00 0.00 35.02 3.55
1744 2961 2.465860 TCGATTGTTGTCCGACCATT 57.534 45.000 0.00 0.00 0.00 3.16
1745 2962 3.596310 TCGATTGTTGTCCGACCATTA 57.404 42.857 0.00 0.00 0.00 1.90
1746 2963 4.131649 TCGATTGTTGTCCGACCATTAT 57.868 40.909 0.00 0.00 0.00 1.28
1747 2964 4.116961 TCGATTGTTGTCCGACCATTATC 58.883 43.478 0.00 0.00 0.00 1.75
1748 2965 4.119862 CGATTGTTGTCCGACCATTATCT 58.880 43.478 0.00 0.00 0.00 1.98
1749 2966 5.068067 TCGATTGTTGTCCGACCATTATCTA 59.932 40.000 0.00 0.00 0.00 1.98
1750 2967 5.751509 CGATTGTTGTCCGACCATTATCTAA 59.248 40.000 0.00 0.00 0.00 2.10
1751 2968 6.423905 CGATTGTTGTCCGACCATTATCTAAT 59.576 38.462 0.00 0.00 0.00 1.73
1752 2969 7.042051 CGATTGTTGTCCGACCATTATCTAATT 60.042 37.037 0.00 0.00 0.00 1.40
1753 2970 6.918892 TGTTGTCCGACCATTATCTAATTG 57.081 37.500 0.00 0.00 0.00 2.32
1754 2971 5.295787 TGTTGTCCGACCATTATCTAATTGC 59.704 40.000 0.00 0.00 0.00 3.56
1755 2972 5.290493 TGTCCGACCATTATCTAATTGCT 57.710 39.130 0.00 0.00 0.00 3.91
1756 2973 5.297547 TGTCCGACCATTATCTAATTGCTC 58.702 41.667 0.00 0.00 0.00 4.26
1757 2974 5.070446 TGTCCGACCATTATCTAATTGCTCT 59.930 40.000 0.00 0.00 0.00 4.09
1758 2975 5.992217 GTCCGACCATTATCTAATTGCTCTT 59.008 40.000 0.00 0.00 0.00 2.85
1759 2976 6.146347 GTCCGACCATTATCTAATTGCTCTTC 59.854 42.308 0.00 0.00 0.00 2.87
1760 2977 5.409826 CCGACCATTATCTAATTGCTCTTCC 59.590 44.000 0.00 0.00 0.00 3.46
1761 2978 6.226787 CGACCATTATCTAATTGCTCTTCCT 58.773 40.000 0.00 0.00 0.00 3.36
1762 2979 6.708054 CGACCATTATCTAATTGCTCTTCCTT 59.292 38.462 0.00 0.00 0.00 3.36
1763 2980 7.095439 CGACCATTATCTAATTGCTCTTCCTTC 60.095 40.741 0.00 0.00 0.00 3.46
1764 2981 7.001073 ACCATTATCTAATTGCTCTTCCTTCC 58.999 38.462 0.00 0.00 0.00 3.46
1765 2982 7.000472 CCATTATCTAATTGCTCTTCCTTCCA 59.000 38.462 0.00 0.00 0.00 3.53
1766 2983 7.668886 CCATTATCTAATTGCTCTTCCTTCCAT 59.331 37.037 0.00 0.00 0.00 3.41
1767 2984 8.512956 CATTATCTAATTGCTCTTCCTTCCATG 58.487 37.037 0.00 0.00 0.00 3.66
1768 2985 4.202441 TCTAATTGCTCTTCCTTCCATGC 58.798 43.478 0.00 0.00 0.00 4.06
1769 2986 2.519771 ATTGCTCTTCCTTCCATGCA 57.480 45.000 0.00 0.00 0.00 3.96
1770 2987 2.519771 TTGCTCTTCCTTCCATGCAT 57.480 45.000 0.00 0.00 0.00 3.96
1771 2988 1.758936 TGCTCTTCCTTCCATGCATG 58.241 50.000 20.19 20.19 0.00 4.06
1772 2989 0.384669 GCTCTTCCTTCCATGCATGC 59.615 55.000 21.69 11.82 0.00 4.06
1773 2990 1.758936 CTCTTCCTTCCATGCATGCA 58.241 50.000 25.04 25.04 0.00 3.96
1774 2991 2.307768 CTCTTCCTTCCATGCATGCAT 58.692 47.619 27.46 27.46 37.08 3.96
1785 3002 3.575965 ATGCATGCATGTATGATGCTG 57.424 42.857 31.74 0.68 44.79 4.41
1786 3003 2.303175 TGCATGCATGTATGATGCTGT 58.697 42.857 25.73 0.00 44.79 4.40
1787 3004 2.691011 TGCATGCATGTATGATGCTGTT 59.309 40.909 25.73 0.00 44.79 3.16
1788 3005 3.243267 TGCATGCATGTATGATGCTGTTC 60.243 43.478 25.73 7.29 44.79 3.18
1789 3006 3.551551 CATGCATGTATGATGCTGTTCG 58.448 45.455 17.96 0.00 44.79 3.95
1790 3007 2.631267 TGCATGTATGATGCTGTTCGT 58.369 42.857 11.54 0.00 44.79 3.85
1791 3008 3.009026 TGCATGTATGATGCTGTTCGTT 58.991 40.909 11.54 0.00 44.79 3.85
1792 3009 3.063861 TGCATGTATGATGCTGTTCGTTC 59.936 43.478 11.54 0.00 44.79 3.95
1793 3010 3.310774 GCATGTATGATGCTGTTCGTTCT 59.689 43.478 0.00 0.00 41.52 3.01
1794 3011 4.201851 GCATGTATGATGCTGTTCGTTCTT 60.202 41.667 0.00 0.00 41.52 2.52
1795 3012 5.674569 GCATGTATGATGCTGTTCGTTCTTT 60.675 40.000 0.00 0.00 41.52 2.52
1796 3013 5.940192 TGTATGATGCTGTTCGTTCTTTT 57.060 34.783 0.00 0.00 0.00 2.27
1797 3014 6.312399 TGTATGATGCTGTTCGTTCTTTTT 57.688 33.333 0.00 0.00 0.00 1.94
1798 3015 6.370593 TGTATGATGCTGTTCGTTCTTTTTC 58.629 36.000 0.00 0.00 0.00 2.29
1799 3016 5.695851 ATGATGCTGTTCGTTCTTTTTCT 57.304 34.783 0.00 0.00 0.00 2.52
1800 3017 5.499139 TGATGCTGTTCGTTCTTTTTCTT 57.501 34.783 0.00 0.00 0.00 2.52
1801 3018 5.890334 TGATGCTGTTCGTTCTTTTTCTTT 58.110 33.333 0.00 0.00 0.00 2.52
1802 3019 6.329496 TGATGCTGTTCGTTCTTTTTCTTTT 58.671 32.000 0.00 0.00 0.00 2.27
1803 3020 6.811170 TGATGCTGTTCGTTCTTTTTCTTTTT 59.189 30.769 0.00 0.00 0.00 1.94
1857 3074 8.990163 AAGGATCAAAGTTTTTACTTCCTACA 57.010 30.769 0.00 0.00 0.00 2.74
1858 3075 8.392372 AGGATCAAAGTTTTTACTTCCTACAC 57.608 34.615 0.00 0.00 0.00 2.90
1859 3076 7.447545 AGGATCAAAGTTTTTACTTCCTACACC 59.552 37.037 0.00 0.00 0.00 4.16
1860 3077 7.229907 GGATCAAAGTTTTTACTTCCTACACCA 59.770 37.037 0.00 0.00 0.00 4.17
1861 3078 7.941431 TCAAAGTTTTTACTTCCTACACCAA 57.059 32.000 0.00 0.00 0.00 3.67
1862 3079 7.764331 TCAAAGTTTTTACTTCCTACACCAAC 58.236 34.615 0.00 0.00 0.00 3.77
1863 3080 7.612633 TCAAAGTTTTTACTTCCTACACCAACT 59.387 33.333 0.00 0.00 0.00 3.16
1864 3081 7.949690 AAGTTTTTACTTCCTACACCAACTT 57.050 32.000 0.00 0.00 0.00 2.66
1865 3082 7.949690 AGTTTTTACTTCCTACACCAACTTT 57.050 32.000 0.00 0.00 0.00 2.66
1866 3083 8.357290 AGTTTTTACTTCCTACACCAACTTTT 57.643 30.769 0.00 0.00 0.00 2.27
1867 3084 8.464404 AGTTTTTACTTCCTACACCAACTTTTC 58.536 33.333 0.00 0.00 0.00 2.29
1868 3085 8.464404 GTTTTTACTTCCTACACCAACTTTTCT 58.536 33.333 0.00 0.00 0.00 2.52
1869 3086 7.562454 TTTACTTCCTACACCAACTTTTCTG 57.438 36.000 0.00 0.00 0.00 3.02
1870 3087 5.112129 ACTTCCTACACCAACTTTTCTGT 57.888 39.130 0.00 0.00 0.00 3.41
1871 3088 5.506708 ACTTCCTACACCAACTTTTCTGTT 58.493 37.500 0.00 0.00 0.00 3.16
1872 3089 5.949952 ACTTCCTACACCAACTTTTCTGTTT 59.050 36.000 0.00 0.00 0.00 2.83
1873 3090 6.095021 ACTTCCTACACCAACTTTTCTGTTTC 59.905 38.462 0.00 0.00 0.00 2.78
1874 3091 5.502079 TCCTACACCAACTTTTCTGTTTCA 58.498 37.500 0.00 0.00 0.00 2.69
1875 3092 5.946972 TCCTACACCAACTTTTCTGTTTCAA 59.053 36.000 0.00 0.00 0.00 2.69
1876 3093 6.094881 TCCTACACCAACTTTTCTGTTTCAAG 59.905 38.462 0.00 0.00 0.00 3.02
1877 3094 5.722021 ACACCAACTTTTCTGTTTCAAGT 57.278 34.783 0.00 0.00 31.90 3.16
1878 3095 6.827586 ACACCAACTTTTCTGTTTCAAGTA 57.172 33.333 0.00 0.00 30.37 2.24
1879 3096 7.404671 ACACCAACTTTTCTGTTTCAAGTAT 57.595 32.000 0.00 0.00 30.37 2.12
1880 3097 8.514330 ACACCAACTTTTCTGTTTCAAGTATA 57.486 30.769 0.00 0.00 30.37 1.47
1881 3098 9.131791 ACACCAACTTTTCTGTTTCAAGTATAT 57.868 29.630 0.00 0.00 30.37 0.86
1882 3099 9.965824 CACCAACTTTTCTGTTTCAAGTATATT 57.034 29.630 0.00 0.00 30.37 1.28
1891 3108 8.827177 TCTGTTTCAAGTATATTTCGTCTTGT 57.173 30.769 0.00 0.00 38.53 3.16
1892 3109 9.268268 TCTGTTTCAAGTATATTTCGTCTTGTT 57.732 29.630 0.00 0.00 38.53 2.83
1893 3110 9.878599 CTGTTTCAAGTATATTTCGTCTTGTTT 57.121 29.630 0.00 0.00 38.53 2.83
1894 3111 9.872757 TGTTTCAAGTATATTTCGTCTTGTTTC 57.127 29.630 0.00 0.00 38.53 2.78
1966 3183 6.843069 GTGCAAAACACCTCAAACAAATAT 57.157 33.333 0.00 0.00 44.02 1.28
1967 3184 7.245419 GTGCAAAACACCTCAAACAAATATT 57.755 32.000 0.00 0.00 44.02 1.28
1968 3185 7.693020 GTGCAAAACACCTCAAACAAATATTT 58.307 30.769 0.00 0.00 44.02 1.40
1969 3186 8.821894 GTGCAAAACACCTCAAACAAATATTTA 58.178 29.630 0.00 0.00 44.02 1.40
1970 3187 9.553064 TGCAAAACACCTCAAACAAATATTTAT 57.447 25.926 0.00 0.00 0.00 1.40
1976 3193 9.834628 ACACCTCAAACAAATATTTATTACGTG 57.165 29.630 0.00 3.95 0.00 4.49
1977 3194 8.794406 CACCTCAAACAAATATTTATTACGTGC 58.206 33.333 0.00 0.00 0.00 5.34
1978 3195 8.736244 ACCTCAAACAAATATTTATTACGTGCT 58.264 29.630 0.00 0.00 0.00 4.40
1979 3196 9.567848 CCTCAAACAAATATTTATTACGTGCTT 57.432 29.630 0.00 0.00 0.00 3.91
1982 3199 9.459276 CAAACAAATATTTATTACGTGCTTTGC 57.541 29.630 0.00 0.00 0.00 3.68
1983 3200 8.749841 AACAAATATTTATTACGTGCTTTGCA 57.250 26.923 0.00 0.00 35.60 4.08
1984 3201 8.393395 ACAAATATTTATTACGTGCTTTGCAG 57.607 30.769 0.00 0.00 40.08 4.41
1985 3202 8.240682 ACAAATATTTATTACGTGCTTTGCAGA 58.759 29.630 0.00 0.00 40.08 4.26
1986 3203 9.071221 CAAATATTTATTACGTGCTTTGCAGAA 57.929 29.630 0.00 0.00 40.08 3.02
1987 3204 9.632807 AAATATTTATTACGTGCTTTGCAGAAA 57.367 25.926 0.00 0.00 40.08 2.52
1988 3205 9.801873 AATATTTATTACGTGCTTTGCAGAAAT 57.198 25.926 0.00 0.00 40.08 2.17
1990 3207 8.841444 ATTTATTACGTGCTTTGCAGAAATAG 57.159 30.769 0.00 0.00 40.08 1.73
1991 3208 2.619013 ACGTGCTTTGCAGAAATAGC 57.381 45.000 0.00 0.00 40.08 2.97
1992 3209 1.879380 ACGTGCTTTGCAGAAATAGCA 59.121 42.857 0.00 0.00 40.08 3.49
2001 3218 4.100707 TGCAGAAATAGCAACATGAAGC 57.899 40.909 0.00 2.43 39.39 3.86
2002 3219 3.103738 GCAGAAATAGCAACATGAAGCG 58.896 45.455 0.00 0.00 35.48 4.68
2003 3220 3.426695 GCAGAAATAGCAACATGAAGCGT 60.427 43.478 0.00 0.00 35.48 5.07
2004 3221 4.726416 CAGAAATAGCAACATGAAGCGTT 58.274 39.130 0.00 1.26 35.48 4.84
2005 3222 5.673568 GCAGAAATAGCAACATGAAGCGTTA 60.674 40.000 0.00 0.00 35.48 3.18
2006 3223 6.489675 CAGAAATAGCAACATGAAGCGTTAT 58.510 36.000 0.00 0.00 35.48 1.89
2007 3224 6.968904 CAGAAATAGCAACATGAAGCGTTATT 59.031 34.615 0.00 1.82 35.48 1.40
2008 3225 8.122330 CAGAAATAGCAACATGAAGCGTTATTA 58.878 33.333 0.00 0.00 35.48 0.98
2009 3226 8.338259 AGAAATAGCAACATGAAGCGTTATTAG 58.662 33.333 0.00 0.00 35.48 1.73
2010 3227 7.553881 AATAGCAACATGAAGCGTTATTAGT 57.446 32.000 0.00 0.00 35.48 2.24
2011 3228 5.221891 AGCAACATGAAGCGTTATTAGTG 57.778 39.130 0.00 0.00 35.48 2.74
2012 3229 4.094887 AGCAACATGAAGCGTTATTAGTGG 59.905 41.667 0.00 0.00 35.48 4.00
2013 3230 4.094294 GCAACATGAAGCGTTATTAGTGGA 59.906 41.667 0.00 0.00 0.00 4.02
2014 3231 5.220854 GCAACATGAAGCGTTATTAGTGGAT 60.221 40.000 0.00 0.00 0.00 3.41
2015 3232 6.422223 CAACATGAAGCGTTATTAGTGGATC 58.578 40.000 0.00 0.00 0.00 3.36
2016 3233 5.670485 ACATGAAGCGTTATTAGTGGATCA 58.330 37.500 0.00 0.00 0.00 2.92
2017 3234 6.291377 ACATGAAGCGTTATTAGTGGATCAT 58.709 36.000 0.00 0.00 0.00 2.45
2018 3235 6.767902 ACATGAAGCGTTATTAGTGGATCATT 59.232 34.615 0.00 0.00 0.00 2.57
2019 3236 6.844696 TGAAGCGTTATTAGTGGATCATTC 57.155 37.500 0.00 0.00 0.00 2.67
2020 3237 5.758296 TGAAGCGTTATTAGTGGATCATTCC 59.242 40.000 0.00 0.00 42.94 3.01
2021 3238 4.307432 AGCGTTATTAGTGGATCATTCCG 58.693 43.478 0.00 0.00 45.89 4.30
2022 3239 3.432252 GCGTTATTAGTGGATCATTCCGG 59.568 47.826 0.00 0.00 45.89 5.14
2023 3240 3.994392 CGTTATTAGTGGATCATTCCGGG 59.006 47.826 0.00 0.00 45.89 5.73
2024 3241 4.324267 GTTATTAGTGGATCATTCCGGGG 58.676 47.826 0.00 0.00 45.89 5.73
2025 3242 2.184088 TTAGTGGATCATTCCGGGGA 57.816 50.000 0.00 0.00 45.89 4.81
2026 3243 2.184088 TAGTGGATCATTCCGGGGAA 57.816 50.000 0.00 2.05 45.89 3.97
2027 3244 0.839946 AGTGGATCATTCCGGGGAAG 59.160 55.000 0.00 0.00 45.89 3.46
2028 3245 0.179018 GTGGATCATTCCGGGGAAGG 60.179 60.000 0.00 5.78 45.89 3.46
2029 3246 1.352622 TGGATCATTCCGGGGAAGGG 61.353 60.000 11.74 4.27 45.89 3.95
2030 3247 1.456287 GATCATTCCGGGGAAGGGG 59.544 63.158 11.74 1.98 37.56 4.79
2031 3248 2.698776 GATCATTCCGGGGAAGGGGC 62.699 65.000 11.74 1.69 37.56 5.80
2032 3249 3.420482 CATTCCGGGGAAGGGGCT 61.420 66.667 0.00 0.00 37.56 5.19
2619 3836 4.621769 AGATAGGCAGTTTAGGTAGGTGT 58.378 43.478 0.00 0.00 0.00 4.16
2620 3837 5.030820 AGATAGGCAGTTTAGGTAGGTGTT 58.969 41.667 0.00 0.00 0.00 3.32
2621 3838 5.487845 AGATAGGCAGTTTAGGTAGGTGTTT 59.512 40.000 0.00 0.00 0.00 2.83
2622 3839 3.751518 AGGCAGTTTAGGTAGGTGTTTG 58.248 45.455 0.00 0.00 0.00 2.93
2623 3840 2.228103 GGCAGTTTAGGTAGGTGTTTGC 59.772 50.000 0.00 0.00 0.00 3.68
2624 3841 2.882137 GCAGTTTAGGTAGGTGTTTGCA 59.118 45.455 0.00 0.00 0.00 4.08
2625 3842 3.058224 GCAGTTTAGGTAGGTGTTTGCAG 60.058 47.826 0.00 0.00 0.00 4.41
2626 3843 4.134563 CAGTTTAGGTAGGTGTTTGCAGT 58.865 43.478 0.00 0.00 0.00 4.40
2627 3844 4.213482 CAGTTTAGGTAGGTGTTTGCAGTC 59.787 45.833 0.00 0.00 0.00 3.51
2628 3845 2.736144 TAGGTAGGTGTTTGCAGTCG 57.264 50.000 0.00 0.00 0.00 4.18
2629 3846 0.034896 AGGTAGGTGTTTGCAGTCGG 59.965 55.000 0.00 0.00 0.00 4.79
2630 3847 0.250166 GGTAGGTGTTTGCAGTCGGT 60.250 55.000 0.00 0.00 0.00 4.69
2631 3848 1.589803 GTAGGTGTTTGCAGTCGGTT 58.410 50.000 0.00 0.00 0.00 4.44
2632 3849 2.548493 GGTAGGTGTTTGCAGTCGGTTA 60.548 50.000 0.00 0.00 0.00 2.85
2633 3850 1.589803 AGGTGTTTGCAGTCGGTTAC 58.410 50.000 0.00 0.00 0.00 2.50
2634 3851 0.233848 GGTGTTTGCAGTCGGTTACG 59.766 55.000 0.00 0.00 42.74 3.18
2635 3852 0.932399 GTGTTTGCAGTCGGTTACGT 59.068 50.000 0.00 0.00 41.85 3.57
2636 3853 2.126467 GTGTTTGCAGTCGGTTACGTA 58.874 47.619 0.00 0.00 41.85 3.57
2637 3854 2.539274 GTGTTTGCAGTCGGTTACGTAA 59.461 45.455 3.29 3.29 41.85 3.18
2638 3855 3.001127 GTGTTTGCAGTCGGTTACGTAAA 59.999 43.478 10.11 0.00 41.85 2.01
2639 3856 3.808726 TGTTTGCAGTCGGTTACGTAAAT 59.191 39.130 10.11 0.00 41.85 1.40
2640 3857 4.084433 TGTTTGCAGTCGGTTACGTAAATC 60.084 41.667 10.11 4.80 41.85 2.17
2641 3858 3.581024 TGCAGTCGGTTACGTAAATCT 57.419 42.857 10.11 3.59 41.85 2.40
2642 3859 4.700268 TGCAGTCGGTTACGTAAATCTA 57.300 40.909 10.11 0.00 41.85 1.98
2643 3860 4.665212 TGCAGTCGGTTACGTAAATCTAG 58.335 43.478 10.11 0.43 41.85 2.43
2644 3861 4.040376 GCAGTCGGTTACGTAAATCTAGG 58.960 47.826 10.11 0.55 41.85 3.02
2645 3862 4.201950 GCAGTCGGTTACGTAAATCTAGGA 60.202 45.833 10.11 0.00 41.85 2.94
2646 3863 5.506982 GCAGTCGGTTACGTAAATCTAGGAT 60.507 44.000 10.11 0.00 41.85 3.24
2647 3864 6.501781 CAGTCGGTTACGTAAATCTAGGATT 58.498 40.000 10.11 0.00 41.85 3.01
2648 3865 7.642669 CAGTCGGTTACGTAAATCTAGGATTA 58.357 38.462 10.11 0.00 41.85 1.75
2649 3866 8.295288 CAGTCGGTTACGTAAATCTAGGATTAT 58.705 37.037 10.11 0.00 41.85 1.28
2650 3867 8.510505 AGTCGGTTACGTAAATCTAGGATTATC 58.489 37.037 10.11 0.00 41.85 1.75
2651 3868 7.479916 GTCGGTTACGTAAATCTAGGATTATCG 59.520 40.741 10.11 0.00 41.85 2.92
2652 3869 7.387673 TCGGTTACGTAAATCTAGGATTATCGA 59.612 37.037 10.11 0.00 41.85 3.59
2653 3870 7.691463 CGGTTACGTAAATCTAGGATTATCGAG 59.309 40.741 10.11 0.00 34.81 4.04
2654 3871 7.967303 GGTTACGTAAATCTAGGATTATCGAGG 59.033 40.741 10.11 4.57 0.00 4.63
2655 3872 8.725148 GTTACGTAAATCTAGGATTATCGAGGA 58.275 37.037 10.11 0.00 0.00 3.71
2656 3873 7.380431 ACGTAAATCTAGGATTATCGAGGAG 57.620 40.000 16.75 0.00 0.00 3.69
2657 3874 6.127952 ACGTAAATCTAGGATTATCGAGGAGC 60.128 42.308 16.75 0.00 0.00 4.70
2658 3875 4.974368 AATCTAGGATTATCGAGGAGCG 57.026 45.455 0.00 0.00 42.69 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.294493 GCAAAGTCCTGCCGGCAA 61.294 61.111 32.09 14.75 36.25 4.52
1 2 4.269523 AGCAAAGTCCTGCCGGCA 62.270 61.111 30.59 30.59 43.73 5.69
2 3 3.741476 CAGCAAAGTCCTGCCGGC 61.741 66.667 22.73 22.73 43.73 6.13
3 4 3.058160 CCAGCAAAGTCCTGCCGG 61.058 66.667 0.00 0.00 43.73 6.13
4 5 3.058160 CCCAGCAAAGTCCTGCCG 61.058 66.667 0.00 0.00 43.73 5.69
5 6 1.228552 TTCCCAGCAAAGTCCTGCC 60.229 57.895 0.00 0.00 43.73 4.85
32 33 4.393778 GGAGGAGGACACCCCCGA 62.394 72.222 0.00 0.00 34.66 5.14
72 73 2.413142 GCCTTCCCAGCTGCATCAC 61.413 63.158 8.66 0.00 0.00 3.06
75 76 4.039092 ACGCCTTCCCAGCTGCAT 62.039 61.111 8.66 0.00 0.00 3.96
204 207 0.687427 AAGCTGTTGGTGCCAAGGTT 60.687 50.000 3.57 2.97 36.52 3.50
213 216 3.290710 AGATGTTGTGAAAGCTGTTGGT 58.709 40.909 0.00 0.00 0.00 3.67
237 240 1.965930 GCAACACGGTGAGCATCCA 60.966 57.895 16.29 0.00 0.00 3.41
308 312 4.647615 CCATCGCCGGGTAGCTCG 62.648 72.222 2.18 0.00 0.00 5.03
331 335 2.104792 TCAAGTCTCTTGAACCCACCAG 59.895 50.000 9.34 0.00 0.00 4.00
347 351 1.133792 CCAAGGGACAACACCTCAAGT 60.134 52.381 0.00 0.00 37.35 3.16
350 354 0.182537 CACCAAGGGACAACACCTCA 59.817 55.000 0.00 0.00 37.35 3.86
357 361 1.133513 AGCACATTCACCAAGGGACAA 60.134 47.619 0.00 0.00 0.00 3.18
360 364 1.003580 GAGAGCACATTCACCAAGGGA 59.996 52.381 0.00 0.00 0.00 4.20
371 375 2.677289 CCAGCCCCTGAGAGCACAT 61.677 63.158 0.00 0.00 32.44 3.21
387 391 3.117701 TGAGACAACCATTCTGAAACCCA 60.118 43.478 0.00 0.00 0.00 4.51
393 397 3.753815 TGCATTGAGACAACCATTCTGA 58.246 40.909 0.00 0.00 0.00 3.27
395 399 4.401022 TCTTGCATTGAGACAACCATTCT 58.599 39.130 0.00 0.00 0.00 2.40
428 432 0.031994 GGTTGCCGCACAAATCAAGT 59.968 50.000 0.00 0.00 40.82 3.16
466 470 1.936547 GAAGCTCACCAATCCACGATC 59.063 52.381 0.00 0.00 0.00 3.69
500 504 7.992033 ACCAATGAATTGTTTGAAAGATCCAAA 59.008 29.630 2.55 0.00 36.06 3.28
552 557 2.754254 CCCAACCCCTTTAGCGGC 60.754 66.667 0.00 0.00 0.00 6.53
600 626 4.261741 CCAAGTGTGCTTCTGTTATGCTTT 60.262 41.667 0.00 0.00 31.49 3.51
639 665 4.927267 TCCTGTTATGACATTTGGGAGT 57.073 40.909 0.00 0.00 34.72 3.85
660 686 3.351740 TCATGTCACACAGTTGTTGGTT 58.648 40.909 0.00 0.00 31.66 3.67
671 697 1.160137 GTTGCTCCCTCATGTCACAC 58.840 55.000 0.00 0.00 0.00 3.82
680 706 3.378427 GGATACAACATTGTTGCTCCCTC 59.622 47.826 26.50 17.50 42.35 4.30
717 743 5.476945 GGTGTTTCATTCCCCATATATGACC 59.523 44.000 14.54 5.32 0.00 4.02
732 758 3.008594 TGTTCCCAGATACGGTGTTTCAT 59.991 43.478 0.00 0.00 0.00 2.57
733 759 2.369203 TGTTCCCAGATACGGTGTTTCA 59.631 45.455 0.00 0.00 0.00 2.69
734 760 3.048337 TGTTCCCAGATACGGTGTTTC 57.952 47.619 0.00 0.00 0.00 2.78
769 795 4.521062 CTTGCCTCCTCGCCTCCG 62.521 72.222 0.00 0.00 0.00 4.63
828 1845 4.156556 TCAGCAGAGATGGTTTGTAATTGC 59.843 41.667 0.00 0.00 0.00 3.56
830 1847 4.946157 CCTCAGCAGAGATGGTTTGTAATT 59.054 41.667 7.84 0.00 44.98 1.40
832 1849 3.327757 ACCTCAGCAGAGATGGTTTGTAA 59.672 43.478 7.84 0.00 44.98 2.41
835 1852 2.486472 ACCTCAGCAGAGATGGTTTG 57.514 50.000 7.84 0.00 44.98 2.93
836 1853 3.515602 AAACCTCAGCAGAGATGGTTT 57.484 42.857 7.84 7.83 44.98 3.27
838 1855 1.612726 GCAAACCTCAGCAGAGATGGT 60.613 52.381 7.84 0.00 44.98 3.55
839 1856 1.093159 GCAAACCTCAGCAGAGATGG 58.907 55.000 7.84 0.00 44.98 3.51
841 1858 2.875094 AAGCAAACCTCAGCAGAGAT 57.125 45.000 7.84 0.00 44.98 2.75
842 1859 2.645838 AAAGCAAACCTCAGCAGAGA 57.354 45.000 7.84 0.00 44.98 3.10
844 1861 5.165961 AGTATAAAGCAAACCTCAGCAGA 57.834 39.130 0.00 0.00 0.00 4.26
845 1862 5.886960 AAGTATAAAGCAAACCTCAGCAG 57.113 39.130 0.00 0.00 0.00 4.24
846 1863 5.564651 GCAAAGTATAAAGCAAACCTCAGCA 60.565 40.000 0.00 0.00 0.00 4.41
847 1864 4.859245 GCAAAGTATAAAGCAAACCTCAGC 59.141 41.667 0.00 0.00 0.00 4.26
848 1865 6.259550 AGCAAAGTATAAAGCAAACCTCAG 57.740 37.500 0.00 0.00 0.00 3.35
849 1866 6.648879 AAGCAAAGTATAAAGCAAACCTCA 57.351 33.333 0.00 0.00 0.00 3.86
852 1869 9.297586 GGTATAAAGCAAAGTATAAAGCAAACC 57.702 33.333 0.00 0.00 0.00 3.27
854 1871 9.849166 GTGGTATAAAGCAAAGTATAAAGCAAA 57.151 29.630 0.00 0.00 34.25 3.68
892 1958 5.279256 CGGAGGAGGAGGAAGAAGAATATTC 60.279 48.000 7.41 7.41 0.00 1.75
974 2118 1.448365 TACGTGGATGCAGCAGCTG 60.448 57.895 18.93 18.93 42.74 4.24
985 2129 1.447140 GCATTCCTGCGTACGTGGA 60.447 57.895 22.01 22.01 38.92 4.02
1201 2361 0.858139 AGGGAGAAGGAGGAGAGGGT 60.858 60.000 0.00 0.00 0.00 4.34
1207 2367 1.615814 CGGAGAGGGAGAAGGAGGA 59.384 63.158 0.00 0.00 0.00 3.71
1234 2406 3.721706 CTGGCCCTGTCCCTGTCC 61.722 72.222 0.00 0.00 0.00 4.02
1235 2407 3.721706 CCTGGCCCTGTCCCTGTC 61.722 72.222 0.00 0.00 0.00 3.51
1636 2847 2.497675 ACAAGTATCTGTCGCAGGATGT 59.502 45.455 6.95 3.78 39.31 3.06
1720 2937 1.582502 GTCGGACAACAATCGATCGAC 59.417 52.381 22.06 14.95 38.61 4.20
1727 2944 7.730364 ATTAGATAATGGTCGGACAACAATC 57.270 36.000 10.76 5.75 0.00 2.67
1731 2948 5.527582 AGCAATTAGATAATGGTCGGACAAC 59.472 40.000 10.76 0.00 0.00 3.32
1734 2951 5.542779 AGAGCAATTAGATAATGGTCGGAC 58.457 41.667 0.00 0.00 32.15 4.79
1735 2952 5.808366 AGAGCAATTAGATAATGGTCGGA 57.192 39.130 0.00 0.00 32.15 4.55
1736 2953 5.409826 GGAAGAGCAATTAGATAATGGTCGG 59.590 44.000 0.00 0.00 32.15 4.79
1737 2954 6.226787 AGGAAGAGCAATTAGATAATGGTCG 58.773 40.000 0.00 0.00 32.15 4.79
1738 2955 7.174080 GGAAGGAAGAGCAATTAGATAATGGTC 59.826 40.741 0.00 0.00 0.00 4.02
1739 2956 7.001073 GGAAGGAAGAGCAATTAGATAATGGT 58.999 38.462 0.00 0.00 0.00 3.55
1740 2957 7.000472 TGGAAGGAAGAGCAATTAGATAATGG 59.000 38.462 0.00 0.00 0.00 3.16
1741 2958 8.512956 CATGGAAGGAAGAGCAATTAGATAATG 58.487 37.037 0.00 0.00 0.00 1.90
1742 2959 7.176340 GCATGGAAGGAAGAGCAATTAGATAAT 59.824 37.037 0.00 0.00 0.00 1.28
1743 2960 6.488006 GCATGGAAGGAAGAGCAATTAGATAA 59.512 38.462 0.00 0.00 0.00 1.75
1744 2961 6.000219 GCATGGAAGGAAGAGCAATTAGATA 59.000 40.000 0.00 0.00 0.00 1.98
1745 2962 4.826183 GCATGGAAGGAAGAGCAATTAGAT 59.174 41.667 0.00 0.00 0.00 1.98
1746 2963 4.202441 GCATGGAAGGAAGAGCAATTAGA 58.798 43.478 0.00 0.00 0.00 2.10
1747 2964 3.949754 TGCATGGAAGGAAGAGCAATTAG 59.050 43.478 0.00 0.00 0.00 1.73
1748 2965 3.966979 TGCATGGAAGGAAGAGCAATTA 58.033 40.909 0.00 0.00 0.00 1.40
1749 2966 2.811410 TGCATGGAAGGAAGAGCAATT 58.189 42.857 0.00 0.00 0.00 2.32
1750 2967 2.519771 TGCATGGAAGGAAGAGCAAT 57.480 45.000 0.00 0.00 0.00 3.56
1751 2968 2.097036 CATGCATGGAAGGAAGAGCAA 58.903 47.619 19.40 0.00 35.45 3.91
1752 2969 1.758936 CATGCATGGAAGGAAGAGCA 58.241 50.000 19.40 0.00 36.34 4.26
1753 2970 0.384669 GCATGCATGGAAGGAAGAGC 59.615 55.000 27.34 5.70 0.00 4.09
1754 2971 1.758936 TGCATGCATGGAAGGAAGAG 58.241 50.000 27.34 0.00 0.00 2.85
1755 2972 2.447408 ATGCATGCATGGAAGGAAGA 57.553 45.000 31.74 0.00 35.03 2.87
1765 2982 2.890945 ACAGCATCATACATGCATGCAT 59.109 40.909 27.46 27.46 46.77 3.96
1766 2983 2.303175 ACAGCATCATACATGCATGCA 58.697 42.857 26.53 25.04 46.77 3.96
1767 2984 3.305964 GAACAGCATCATACATGCATGC 58.694 45.455 26.53 11.82 46.77 4.06
1768 2985 3.002965 ACGAACAGCATCATACATGCATG 59.997 43.478 25.09 25.09 46.77 4.06
1769 2986 3.208594 ACGAACAGCATCATACATGCAT 58.791 40.909 9.16 0.00 46.77 3.96
1770 2987 2.631267 ACGAACAGCATCATACATGCA 58.369 42.857 9.16 0.00 46.77 3.96
1771 2988 3.310774 AGAACGAACAGCATCATACATGC 59.689 43.478 0.00 0.00 44.85 4.06
1772 2989 5.475273 AAGAACGAACAGCATCATACATG 57.525 39.130 0.00 0.00 0.00 3.21
1773 2990 6.500684 AAAAGAACGAACAGCATCATACAT 57.499 33.333 0.00 0.00 0.00 2.29
1774 2991 5.940192 AAAAGAACGAACAGCATCATACA 57.060 34.783 0.00 0.00 0.00 2.29
1775 2992 6.603095 AGAAAAAGAACGAACAGCATCATAC 58.397 36.000 0.00 0.00 0.00 2.39
1776 2993 6.801539 AGAAAAAGAACGAACAGCATCATA 57.198 33.333 0.00 0.00 0.00 2.15
1777 2994 5.695851 AGAAAAAGAACGAACAGCATCAT 57.304 34.783 0.00 0.00 0.00 2.45
1778 2995 5.499139 AAGAAAAAGAACGAACAGCATCA 57.501 34.783 0.00 0.00 0.00 3.07
1779 2996 6.812481 AAAAGAAAAAGAACGAACAGCATC 57.188 33.333 0.00 0.00 0.00 3.91
1831 3048 9.416284 TGTAGGAAGTAAAAACTTTGATCCTTT 57.584 29.630 0.00 0.00 0.00 3.11
1832 3049 8.847196 GTGTAGGAAGTAAAAACTTTGATCCTT 58.153 33.333 0.00 0.00 0.00 3.36
1833 3050 7.447545 GGTGTAGGAAGTAAAAACTTTGATCCT 59.552 37.037 0.00 0.00 0.00 3.24
1834 3051 7.229907 TGGTGTAGGAAGTAAAAACTTTGATCC 59.770 37.037 0.00 0.00 0.00 3.36
1835 3052 8.161699 TGGTGTAGGAAGTAAAAACTTTGATC 57.838 34.615 0.00 0.00 0.00 2.92
1836 3053 8.410912 GTTGGTGTAGGAAGTAAAAACTTTGAT 58.589 33.333 0.00 0.00 0.00 2.57
1837 3054 7.612633 AGTTGGTGTAGGAAGTAAAAACTTTGA 59.387 33.333 0.00 0.00 0.00 2.69
1838 3055 7.768240 AGTTGGTGTAGGAAGTAAAAACTTTG 58.232 34.615 0.00 0.00 0.00 2.77
1839 3056 7.949690 AGTTGGTGTAGGAAGTAAAAACTTT 57.050 32.000 0.00 0.00 0.00 2.66
1840 3057 7.949690 AAGTTGGTGTAGGAAGTAAAAACTT 57.050 32.000 0.00 0.00 32.16 2.66
1841 3058 7.949690 AAAGTTGGTGTAGGAAGTAAAAACT 57.050 32.000 0.00 0.00 0.00 2.66
1842 3059 8.464404 AGAAAAGTTGGTGTAGGAAGTAAAAAC 58.536 33.333 0.00 0.00 0.00 2.43
1843 3060 8.463607 CAGAAAAGTTGGTGTAGGAAGTAAAAA 58.536 33.333 0.00 0.00 0.00 1.94
1844 3061 7.612633 ACAGAAAAGTTGGTGTAGGAAGTAAAA 59.387 33.333 0.00 0.00 0.00 1.52
1845 3062 7.114095 ACAGAAAAGTTGGTGTAGGAAGTAAA 58.886 34.615 0.00 0.00 0.00 2.01
1846 3063 6.655930 ACAGAAAAGTTGGTGTAGGAAGTAA 58.344 36.000 0.00 0.00 0.00 2.24
1847 3064 6.243216 ACAGAAAAGTTGGTGTAGGAAGTA 57.757 37.500 0.00 0.00 0.00 2.24
1848 3065 5.112129 ACAGAAAAGTTGGTGTAGGAAGT 57.888 39.130 0.00 0.00 0.00 3.01
1849 3066 6.094881 TGAAACAGAAAAGTTGGTGTAGGAAG 59.905 38.462 0.00 0.00 0.00 3.46
1850 3067 5.946972 TGAAACAGAAAAGTTGGTGTAGGAA 59.053 36.000 0.00 0.00 0.00 3.36
1851 3068 5.502079 TGAAACAGAAAAGTTGGTGTAGGA 58.498 37.500 0.00 0.00 0.00 2.94
1852 3069 5.828299 TGAAACAGAAAAGTTGGTGTAGG 57.172 39.130 0.00 0.00 0.00 3.18
1853 3070 6.852664 ACTTGAAACAGAAAAGTTGGTGTAG 58.147 36.000 0.00 0.00 29.98 2.74
1854 3071 6.827586 ACTTGAAACAGAAAAGTTGGTGTA 57.172 33.333 0.00 0.00 29.98 2.90
1855 3072 5.722021 ACTTGAAACAGAAAAGTTGGTGT 57.278 34.783 0.00 0.00 29.98 4.16
1856 3073 9.965824 AATATACTTGAAACAGAAAAGTTGGTG 57.034 29.630 0.00 0.00 35.77 4.17
1865 3082 9.268268 ACAAGACGAAATATACTTGAAACAGAA 57.732 29.630 0.00 0.00 41.16 3.02
1866 3083 8.827177 ACAAGACGAAATATACTTGAAACAGA 57.173 30.769 0.00 0.00 41.16 3.41
1867 3084 9.878599 AAACAAGACGAAATATACTTGAAACAG 57.121 29.630 0.00 0.00 41.16 3.16
1868 3085 9.872757 GAAACAAGACGAAATATACTTGAAACA 57.127 29.630 0.00 0.00 41.16 2.83
1936 3153 2.024414 GAGGTGTTTTGCACTTCCAGT 58.976 47.619 0.00 0.00 45.19 4.00
1937 3154 2.781945 GAGGTGTTTTGCACTTCCAG 57.218 50.000 0.00 0.00 45.19 3.86
1941 3158 3.951775 TGTTTGAGGTGTTTTGCACTT 57.048 38.095 0.00 0.00 46.86 3.16
1942 3159 3.951775 TTGTTTGAGGTGTTTTGCACT 57.048 38.095 0.00 0.00 46.86 4.40
1943 3160 6.843069 ATATTTGTTTGAGGTGTTTTGCAC 57.157 33.333 0.00 0.00 46.97 4.57
1944 3161 7.856145 AAATATTTGTTTGAGGTGTTTTGCA 57.144 28.000 0.00 0.00 0.00 4.08
1950 3167 9.834628 CACGTAATAAATATTTGTTTGAGGTGT 57.165 29.630 14.38 3.89 0.00 4.16
1951 3168 8.794406 GCACGTAATAAATATTTGTTTGAGGTG 58.206 33.333 14.38 17.15 0.00 4.00
1952 3169 8.736244 AGCACGTAATAAATATTTGTTTGAGGT 58.264 29.630 14.38 7.48 0.00 3.85
1953 3170 9.567848 AAGCACGTAATAAATATTTGTTTGAGG 57.432 29.630 14.38 6.95 0.00 3.86
1956 3173 9.459276 GCAAAGCACGTAATAAATATTTGTTTG 57.541 29.630 14.38 8.86 0.00 2.93
1957 3174 9.197694 TGCAAAGCACGTAATAAATATTTGTTT 57.802 25.926 14.38 8.87 31.71 2.83
1958 3175 8.749841 TGCAAAGCACGTAATAAATATTTGTT 57.250 26.923 13.76 13.76 31.71 2.83
1959 3176 8.240682 TCTGCAAAGCACGTAATAAATATTTGT 58.759 29.630 11.05 0.84 33.79 2.83
1960 3177 8.613613 TCTGCAAAGCACGTAATAAATATTTG 57.386 30.769 11.05 0.00 33.79 2.32
1961 3178 9.632807 TTTCTGCAAAGCACGTAATAAATATTT 57.367 25.926 5.89 5.89 33.79 1.40
1962 3179 9.801873 ATTTCTGCAAAGCACGTAATAAATATT 57.198 25.926 0.00 0.00 33.79 1.28
1964 3181 9.929722 CTATTTCTGCAAAGCACGTAATAAATA 57.070 29.630 0.00 0.00 33.79 1.40
1965 3182 7.432252 GCTATTTCTGCAAAGCACGTAATAAAT 59.568 33.333 0.00 0.00 33.79 1.40
1966 3183 6.745450 GCTATTTCTGCAAAGCACGTAATAAA 59.255 34.615 0.00 0.00 33.79 1.40
1967 3184 6.128145 TGCTATTTCTGCAAAGCACGTAATAA 60.128 34.615 0.00 0.00 39.92 1.40
1968 3185 5.352846 TGCTATTTCTGCAAAGCACGTAATA 59.647 36.000 0.00 0.00 39.92 0.98
1969 3186 4.155826 TGCTATTTCTGCAAAGCACGTAAT 59.844 37.500 0.00 0.00 39.92 1.89
1970 3187 3.500299 TGCTATTTCTGCAAAGCACGTAA 59.500 39.130 0.00 0.00 39.92 3.18
1971 3188 3.070748 TGCTATTTCTGCAAAGCACGTA 58.929 40.909 0.00 0.00 39.92 3.57
1972 3189 1.879380 TGCTATTTCTGCAAAGCACGT 59.121 42.857 3.95 0.00 39.92 4.49
1973 3190 2.617250 TGCTATTTCTGCAAAGCACG 57.383 45.000 3.95 0.00 39.92 5.34
1979 3196 4.487948 GCTTCATGTTGCTATTTCTGCAA 58.512 39.130 0.00 0.00 46.48 4.08
1980 3197 3.426560 CGCTTCATGTTGCTATTTCTGCA 60.427 43.478 10.00 0.00 38.80 4.41
1981 3198 3.103738 CGCTTCATGTTGCTATTTCTGC 58.896 45.455 10.00 0.00 0.00 4.26
1982 3199 4.346734 ACGCTTCATGTTGCTATTTCTG 57.653 40.909 10.00 0.00 0.00 3.02
1983 3200 6.683974 ATAACGCTTCATGTTGCTATTTCT 57.316 33.333 10.00 0.00 0.00 2.52
1984 3201 8.122952 ACTAATAACGCTTCATGTTGCTATTTC 58.877 33.333 10.00 0.00 0.00 2.17
1985 3202 7.910162 CACTAATAACGCTTCATGTTGCTATTT 59.090 33.333 10.00 4.65 0.00 1.40
1986 3203 7.409697 CACTAATAACGCTTCATGTTGCTATT 58.590 34.615 10.00 9.91 0.00 1.73
1987 3204 6.017934 CCACTAATAACGCTTCATGTTGCTAT 60.018 38.462 10.00 1.75 0.00 2.97
1988 3205 5.293324 CCACTAATAACGCTTCATGTTGCTA 59.707 40.000 10.00 0.00 0.00 3.49
1989 3206 4.094887 CCACTAATAACGCTTCATGTTGCT 59.905 41.667 10.00 0.00 0.00 3.91
1990 3207 4.094294 TCCACTAATAACGCTTCATGTTGC 59.906 41.667 0.00 0.00 0.00 4.17
1991 3208 5.794687 TCCACTAATAACGCTTCATGTTG 57.205 39.130 0.00 0.00 0.00 3.33
1992 3209 6.112734 TGATCCACTAATAACGCTTCATGTT 58.887 36.000 0.00 0.00 0.00 2.71
1993 3210 5.670485 TGATCCACTAATAACGCTTCATGT 58.330 37.500 0.00 0.00 0.00 3.21
1994 3211 6.791887 ATGATCCACTAATAACGCTTCATG 57.208 37.500 0.00 0.00 0.00 3.07
1995 3212 6.428159 GGAATGATCCACTAATAACGCTTCAT 59.572 38.462 0.00 0.00 45.79 2.57
1996 3213 5.758296 GGAATGATCCACTAATAACGCTTCA 59.242 40.000 0.00 0.00 45.79 3.02
1997 3214 5.107453 CGGAATGATCCACTAATAACGCTTC 60.107 44.000 0.00 0.00 46.97 3.86
1998 3215 4.750098 CGGAATGATCCACTAATAACGCTT 59.250 41.667 0.00 0.00 46.97 4.68
1999 3216 4.307432 CGGAATGATCCACTAATAACGCT 58.693 43.478 0.00 0.00 46.97 5.07
2000 3217 3.432252 CCGGAATGATCCACTAATAACGC 59.568 47.826 0.00 0.00 46.97 4.84
2001 3218 3.994392 CCCGGAATGATCCACTAATAACG 59.006 47.826 0.73 0.00 46.97 3.18
2002 3219 4.041198 TCCCCGGAATGATCCACTAATAAC 59.959 45.833 0.73 0.00 46.97 1.89
2003 3220 4.236195 TCCCCGGAATGATCCACTAATAA 58.764 43.478 0.73 0.00 46.97 1.40
2004 3221 3.864328 TCCCCGGAATGATCCACTAATA 58.136 45.455 0.73 0.00 46.97 0.98
2005 3222 2.701551 TCCCCGGAATGATCCACTAAT 58.298 47.619 0.73 0.00 46.97 1.73
2006 3223 2.184088 TCCCCGGAATGATCCACTAA 57.816 50.000 0.73 0.00 46.97 2.24
2007 3224 2.047061 CTTCCCCGGAATGATCCACTA 58.953 52.381 0.73 0.00 46.97 2.74
2008 3225 0.839946 CTTCCCCGGAATGATCCACT 59.160 55.000 0.73 0.00 46.97 4.00
2009 3226 0.179018 CCTTCCCCGGAATGATCCAC 60.179 60.000 0.73 0.00 46.97 4.02
2010 3227 1.352622 CCCTTCCCCGGAATGATCCA 61.353 60.000 0.73 0.00 46.97 3.41
2011 3228 1.456287 CCCTTCCCCGGAATGATCC 59.544 63.158 0.73 0.00 42.80 3.36
2012 3229 1.456287 CCCCTTCCCCGGAATGATC 59.544 63.158 0.73 0.00 33.28 2.92
2013 3230 2.768022 GCCCCTTCCCCGGAATGAT 61.768 63.158 0.73 0.00 33.28 2.45
2014 3231 3.416880 GCCCCTTCCCCGGAATGA 61.417 66.667 0.73 0.00 33.28 2.57
2015 3232 3.420482 AGCCCCTTCCCCGGAATG 61.420 66.667 0.73 0.00 33.28 2.67
2597 3814 4.621769 ACACCTACCTAAACTGCCTATCT 58.378 43.478 0.00 0.00 0.00 1.98
2598 3815 5.354842 AACACCTACCTAAACTGCCTATC 57.645 43.478 0.00 0.00 0.00 2.08
2599 3816 5.497474 CAAACACCTACCTAAACTGCCTAT 58.503 41.667 0.00 0.00 0.00 2.57
2600 3817 4.804934 GCAAACACCTACCTAAACTGCCTA 60.805 45.833 0.00 0.00 0.00 3.93
2601 3818 3.751518 CAAACACCTACCTAAACTGCCT 58.248 45.455 0.00 0.00 0.00 4.75
2602 3819 2.228103 GCAAACACCTACCTAAACTGCC 59.772 50.000 0.00 0.00 0.00 4.85
2603 3820 2.882137 TGCAAACACCTACCTAAACTGC 59.118 45.455 0.00 0.00 0.00 4.40
2604 3821 4.134563 ACTGCAAACACCTACCTAAACTG 58.865 43.478 0.00 0.00 0.00 3.16
2605 3822 4.386711 GACTGCAAACACCTACCTAAACT 58.613 43.478 0.00 0.00 0.00 2.66
2606 3823 3.185797 CGACTGCAAACACCTACCTAAAC 59.814 47.826 0.00 0.00 0.00 2.01
2607 3824 3.395639 CGACTGCAAACACCTACCTAAA 58.604 45.455 0.00 0.00 0.00 1.85
2608 3825 2.289195 CCGACTGCAAACACCTACCTAA 60.289 50.000 0.00 0.00 0.00 2.69
2609 3826 1.274167 CCGACTGCAAACACCTACCTA 59.726 52.381 0.00 0.00 0.00 3.08
2610 3827 0.034896 CCGACTGCAAACACCTACCT 59.965 55.000 0.00 0.00 0.00 3.08
2611 3828 0.250166 ACCGACTGCAAACACCTACC 60.250 55.000 0.00 0.00 0.00 3.18
2612 3829 1.589803 AACCGACTGCAAACACCTAC 58.410 50.000 0.00 0.00 0.00 3.18
2613 3830 2.758009 GTAACCGACTGCAAACACCTA 58.242 47.619 0.00 0.00 0.00 3.08
2614 3831 1.589803 GTAACCGACTGCAAACACCT 58.410 50.000 0.00 0.00 0.00 4.00
2615 3832 0.233848 CGTAACCGACTGCAAACACC 59.766 55.000 0.00 0.00 35.63 4.16
2616 3833 0.932399 ACGTAACCGACTGCAAACAC 59.068 50.000 0.00 0.00 37.88 3.32
2617 3834 2.505628 TACGTAACCGACTGCAAACA 57.494 45.000 0.00 0.00 37.88 2.83
2618 3835 3.857923 TTTACGTAACCGACTGCAAAC 57.142 42.857 7.70 0.00 37.88 2.93
2619 3836 4.309099 AGATTTACGTAACCGACTGCAAA 58.691 39.130 7.70 0.00 37.88 3.68
2620 3837 3.916761 AGATTTACGTAACCGACTGCAA 58.083 40.909 7.70 0.00 37.88 4.08
2621 3838 3.581024 AGATTTACGTAACCGACTGCA 57.419 42.857 7.70 0.00 37.88 4.41
2622 3839 4.040376 CCTAGATTTACGTAACCGACTGC 58.960 47.826 7.70 0.00 37.88 4.40
2623 3840 5.490139 TCCTAGATTTACGTAACCGACTG 57.510 43.478 7.70 0.00 37.88 3.51
2624 3841 6.705863 AATCCTAGATTTACGTAACCGACT 57.294 37.500 7.70 7.58 37.88 4.18
2625 3842 7.479916 CGATAATCCTAGATTTACGTAACCGAC 59.520 40.741 7.70 0.23 37.88 4.79
2626 3843 7.387673 TCGATAATCCTAGATTTACGTAACCGA 59.612 37.037 7.70 0.00 37.88 4.69
2627 3844 7.521529 TCGATAATCCTAGATTTACGTAACCG 58.478 38.462 7.70 0.00 40.83 4.44
2628 3845 7.967303 CCTCGATAATCCTAGATTTACGTAACC 59.033 40.741 7.70 3.17 0.00 2.85
2629 3846 8.725148 TCCTCGATAATCCTAGATTTACGTAAC 58.275 37.037 7.70 0.00 0.00 2.50
2630 3847 8.853077 TCCTCGATAATCCTAGATTTACGTAA 57.147 34.615 3.29 3.29 0.00 3.18
2631 3848 7.065563 GCTCCTCGATAATCCTAGATTTACGTA 59.934 40.741 0.00 0.00 0.00 3.57
2632 3849 6.127952 GCTCCTCGATAATCCTAGATTTACGT 60.128 42.308 0.00 0.00 0.00 3.57
2633 3850 6.259638 GCTCCTCGATAATCCTAGATTTACG 58.740 44.000 0.00 3.09 0.00 3.18
2634 3851 6.093771 TCGCTCCTCGATAATCCTAGATTTAC 59.906 42.308 0.00 0.00 43.16 2.01
2635 3852 6.178324 TCGCTCCTCGATAATCCTAGATTTA 58.822 40.000 0.00 0.00 43.16 1.40
2636 3853 5.010933 TCGCTCCTCGATAATCCTAGATTT 58.989 41.667 0.00 0.00 43.16 2.17
2637 3854 4.590918 TCGCTCCTCGATAATCCTAGATT 58.409 43.478 0.00 0.00 43.16 2.40
2638 3855 4.223556 TCGCTCCTCGATAATCCTAGAT 57.776 45.455 0.00 0.00 43.16 1.98
2639 3856 3.697619 TCGCTCCTCGATAATCCTAGA 57.302 47.619 0.00 0.00 43.16 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.