Multiple sequence alignment - TraesCS5B01G571600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G571600 chr5B 100.000 4145 0 0 1 4145 712851360 712855504 0.000000e+00 7655.0
1 TraesCS5B01G571600 chr5D 92.666 2509 99 29 879 3353 562339482 562341939 0.000000e+00 3535.0
2 TraesCS5B01G571600 chr5D 85.690 594 59 12 1 576 562338630 562339215 1.650000e-168 603.0
3 TraesCS5B01G571600 chr5D 82.367 414 21 11 3755 4143 562342324 562342710 3.110000e-81 313.0
4 TraesCS5B01G571600 chr5D 95.238 42 1 1 3376 3416 562341945 562341986 9.620000e-07 65.8
5 TraesCS5B01G571600 chr7B 89.009 555 18 5 1082 1636 266801 266290 0.000000e+00 647.0
6 TraesCS5B01G571600 chr7B 95.455 374 10 1 36 402 267923 267550 1.280000e-164 590.0
7 TraesCS5B01G571600 chr7B 81.003 379 26 10 3793 4145 265549 265191 4.110000e-65 259.0
8 TraesCS5B01G571600 chr7B 94.737 152 8 0 2930 3081 266294 266143 1.930000e-58 237.0
9 TraesCS5B01G571600 chr7B 91.667 60 5 0 3149 3208 266117 266058 2.660000e-12 84.2
10 TraesCS5B01G571600 chr3B 92.336 274 16 3 2784 3052 772893947 772894220 6.500000e-103 385.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G571600 chr5B 712851360 712855504 4144 False 7655.00 7655 100.00000 1 4145 1 chr5B.!!$F1 4144
1 TraesCS5B01G571600 chr5D 562338630 562342710 4080 False 1129.20 3535 88.99025 1 4143 4 chr5D.!!$F1 4142
2 TraesCS5B01G571600 chr7B 265191 267923 2732 True 363.44 647 90.37420 36 4145 5 chr7B.!!$R1 4109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 494 0.173029 TTTTGTGGTGCTGTGCTGTG 59.827 50.0 0.0 0.00 0.0 3.66 F
1719 2130 0.179048 CCATGATTGCCGGCTACTCA 60.179 55.0 29.7 25.27 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2720 0.108585 GAGGTTGTCCCTTGCACAGA 59.891 55.0 0.0 0.0 46.51 3.41 R
3678 4214 0.036010 CTGCCCACGGATTCTTCTGT 60.036 55.0 0.0 0.0 42.37 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.698309 GCACAGATGTACTTACTAATCATGTAT 57.302 33.333 0.00 0.00 0.00 2.29
61 62 6.840527 TCCAGCATATCTCATGTCCAAATAA 58.159 36.000 0.00 0.00 0.00 1.40
75 76 2.695147 CCAAATAATGGGGAAGGCACTC 59.305 50.000 0.00 0.00 46.27 3.51
133 134 3.003897 CCTCGTCCTGAACTACTATCTGC 59.996 52.174 0.00 0.00 0.00 4.26
140 141 3.643320 CTGAACTACTATCTGCATCCCCA 59.357 47.826 0.00 0.00 0.00 4.96
402 410 8.610248 TTGATTTGATTTGATTTTCTGCACAT 57.390 26.923 0.00 0.00 0.00 3.21
438 490 0.249031 GTCCTTTTGTGGTGCTGTGC 60.249 55.000 0.00 0.00 0.00 4.57
439 491 0.395586 TCCTTTTGTGGTGCTGTGCT 60.396 50.000 0.00 0.00 0.00 4.40
440 492 0.249155 CCTTTTGTGGTGCTGTGCTG 60.249 55.000 0.00 0.00 0.00 4.41
442 494 0.173029 TTTTGTGGTGCTGTGCTGTG 59.827 50.000 0.00 0.00 0.00 3.66
443 495 0.679321 TTTGTGGTGCTGTGCTGTGA 60.679 50.000 0.00 0.00 0.00 3.58
444 496 1.375853 TTGTGGTGCTGTGCTGTGAC 61.376 55.000 0.00 0.00 0.00 3.67
445 497 1.819208 GTGGTGCTGTGCTGTGACA 60.819 57.895 0.00 0.00 0.00 3.58
446 498 1.077858 TGGTGCTGTGCTGTGACAA 60.078 52.632 0.00 0.00 0.00 3.18
447 499 0.679321 TGGTGCTGTGCTGTGACAAA 60.679 50.000 0.00 0.00 0.00 2.83
448 500 0.455410 GGTGCTGTGCTGTGACAAAA 59.545 50.000 0.00 0.00 0.00 2.44
449 501 1.135141 GGTGCTGTGCTGTGACAAAAA 60.135 47.619 0.00 0.00 0.00 1.94
495 547 5.755375 TGTGTAAAAGAAGAGAAGACAGCAG 59.245 40.000 0.00 0.00 0.00 4.24
497 549 6.145371 GTGTAAAAGAAGAGAAGACAGCAGAG 59.855 42.308 0.00 0.00 0.00 3.35
498 550 3.959535 AAGAAGAGAAGACAGCAGAGG 57.040 47.619 0.00 0.00 0.00 3.69
505 557 2.106566 GAAGACAGCAGAGGGAGATGA 58.893 52.381 0.00 0.00 0.00 2.92
506 558 1.779221 AGACAGCAGAGGGAGATGAG 58.221 55.000 0.00 0.00 0.00 2.90
507 559 1.287442 AGACAGCAGAGGGAGATGAGA 59.713 52.381 0.00 0.00 0.00 3.27
508 560 2.091166 AGACAGCAGAGGGAGATGAGAT 60.091 50.000 0.00 0.00 0.00 2.75
509 561 2.036217 GACAGCAGAGGGAGATGAGATG 59.964 54.545 0.00 0.00 0.00 2.90
511 563 2.297880 CAGCAGAGGGAGATGAGATGAG 59.702 54.545 0.00 0.00 0.00 2.90
512 564 2.177451 AGCAGAGGGAGATGAGATGAGA 59.823 50.000 0.00 0.00 0.00 3.27
513 565 3.167485 GCAGAGGGAGATGAGATGAGAT 58.833 50.000 0.00 0.00 0.00 2.75
514 566 3.056393 GCAGAGGGAGATGAGATGAGATG 60.056 52.174 0.00 0.00 0.00 2.90
515 567 3.056393 CAGAGGGAGATGAGATGAGATGC 60.056 52.174 0.00 0.00 0.00 3.91
581 633 5.649782 ATCTAAGGATGCCACTTTTGTTG 57.350 39.130 0.00 0.00 0.00 3.33
584 636 3.457610 AGGATGCCACTTTTGTTGTTG 57.542 42.857 0.00 0.00 0.00 3.33
586 638 3.197549 AGGATGCCACTTTTGTTGTTGTT 59.802 39.130 0.00 0.00 0.00 2.83
587 639 3.309410 GGATGCCACTTTTGTTGTTGTTG 59.691 43.478 0.00 0.00 0.00 3.33
589 641 3.733337 TGCCACTTTTGTTGTTGTTGTT 58.267 36.364 0.00 0.00 0.00 2.83
590 642 3.496130 TGCCACTTTTGTTGTTGTTGTTG 59.504 39.130 0.00 0.00 0.00 3.33
592 644 4.024472 GCCACTTTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
593 645 5.438972 CCACTTTTGTTGTTGTTGTTGTTG 58.561 37.500 0.00 0.00 0.00 3.33
601 747 5.755375 TGTTGTTGTTGTTGTTGTTGTTCAT 59.245 32.000 0.00 0.00 0.00 2.57
642 1022 8.642908 TGAATGAATGAATGAATGAATGAAGC 57.357 30.769 0.00 0.00 0.00 3.86
643 1023 8.254508 TGAATGAATGAATGAATGAATGAAGCA 58.745 29.630 0.00 0.00 0.00 3.91
644 1024 8.648557 AATGAATGAATGAATGAATGAAGCAG 57.351 30.769 0.00 0.00 0.00 4.24
645 1025 7.399245 TGAATGAATGAATGAATGAAGCAGA 57.601 32.000 0.00 0.00 0.00 4.26
646 1026 8.007405 TGAATGAATGAATGAATGAAGCAGAT 57.993 30.769 0.00 0.00 0.00 2.90
647 1027 8.135529 TGAATGAATGAATGAATGAAGCAGATC 58.864 33.333 0.00 0.00 0.00 2.75
648 1028 7.582667 ATGAATGAATGAATGAAGCAGATCA 57.417 32.000 0.00 0.00 0.00 2.92
649 1029 7.582667 TGAATGAATGAATGAAGCAGATCAT 57.417 32.000 0.00 0.00 41.74 2.45
650 1030 7.425606 TGAATGAATGAATGAAGCAGATCATG 58.574 34.615 0.00 0.00 39.90 3.07
761 1144 2.391616 TCAGGTCAATGCTACTGCTG 57.608 50.000 0.00 0.00 40.48 4.41
764 1147 2.816087 CAGGTCAATGCTACTGCTGTTT 59.184 45.455 0.09 0.00 40.48 2.83
767 1150 5.817296 CAGGTCAATGCTACTGCTGTTTATA 59.183 40.000 0.09 0.00 40.48 0.98
769 1152 7.657354 CAGGTCAATGCTACTGCTGTTTATATA 59.343 37.037 0.09 0.00 40.48 0.86
770 1153 8.378565 AGGTCAATGCTACTGCTGTTTATATAT 58.621 33.333 0.09 0.00 40.48 0.86
771 1154 9.003658 GGTCAATGCTACTGCTGTTTATATATT 57.996 33.333 0.09 0.00 40.48 1.28
804 1187 8.950208 AGAGAAAATACTAGTATGTTTGAGCC 57.050 34.615 17.61 6.56 0.00 4.70
805 1188 8.763601 AGAGAAAATACTAGTATGTTTGAGCCT 58.236 33.333 17.61 10.62 0.00 4.58
806 1189 8.950208 AGAAAATACTAGTATGTTTGAGCCTC 57.050 34.615 17.61 5.42 0.00 4.70
807 1190 8.763601 AGAAAATACTAGTATGTTTGAGCCTCT 58.236 33.333 17.61 7.37 0.00 3.69
814 1197 8.322091 ACTAGTATGTTTGAGCCTCTAAAATGT 58.678 33.333 0.00 0.00 0.00 2.71
819 1202 5.239306 TGTTTGAGCCTCTAAAATGTGTGAG 59.761 40.000 0.00 0.00 0.00 3.51
824 1207 4.999950 AGCCTCTAAAATGTGTGAGTGAAG 59.000 41.667 0.00 0.00 0.00 3.02
828 1211 6.486657 CCTCTAAAATGTGTGAGTGAAGGAAA 59.513 38.462 0.00 0.00 0.00 3.13
866 1262 8.862325 ACTACATCTTGAGTCTATCTATCTGG 57.138 38.462 0.00 0.00 0.00 3.86
867 1263 8.664992 ACTACATCTTGAGTCTATCTATCTGGA 58.335 37.037 0.00 0.00 0.00 3.86
868 1264 9.685276 CTACATCTTGAGTCTATCTATCTGGAT 57.315 37.037 0.00 0.00 0.00 3.41
869 1265 8.954834 ACATCTTGAGTCTATCTATCTGGATT 57.045 34.615 0.00 0.00 0.00 3.01
870 1266 9.378504 ACATCTTGAGTCTATCTATCTGGATTT 57.621 33.333 0.00 0.00 0.00 2.17
871 1267 9.642327 CATCTTGAGTCTATCTATCTGGATTTG 57.358 37.037 0.00 0.00 0.00 2.32
872 1268 9.599056 ATCTTGAGTCTATCTATCTGGATTTGA 57.401 33.333 0.00 0.00 0.00 2.69
873 1269 9.426534 TCTTGAGTCTATCTATCTGGATTTGAA 57.573 33.333 0.00 0.00 0.00 2.69
876 1272 9.599056 TGAGTCTATCTATCTGGATTTGAATCT 57.401 33.333 3.94 0.00 35.73 2.40
910 1306 8.010733 TGAAAACTGAATGGAAAGAAAGTGAT 57.989 30.769 0.00 0.00 0.00 3.06
957 1357 8.932945 TTTTTATGTATCTGTAGCTGACTCTG 57.067 34.615 0.00 0.00 0.00 3.35
958 1358 7.881775 TTTATGTATCTGTAGCTGACTCTGA 57.118 36.000 0.00 0.00 0.00 3.27
959 1359 5.766150 ATGTATCTGTAGCTGACTCTGAC 57.234 43.478 0.00 0.00 0.00 3.51
960 1360 4.849518 TGTATCTGTAGCTGACTCTGACT 58.150 43.478 0.00 0.00 0.00 3.41
961 1361 4.878971 TGTATCTGTAGCTGACTCTGACTC 59.121 45.833 0.00 0.00 0.00 3.36
962 1362 3.712016 TCTGTAGCTGACTCTGACTCT 57.288 47.619 0.00 0.00 0.00 3.24
995 1395 2.669569 TGAGCGGCAGCCAGAAAC 60.670 61.111 13.30 0.00 46.67 2.78
1143 1554 4.415332 GCGCTCACCGTCTTCCGA 62.415 66.667 0.00 0.00 39.56 4.55
1356 1767 2.357034 GCCAGGCTGTTCGACGAA 60.357 61.111 14.43 6.10 0.00 3.85
1357 1768 1.959226 GCCAGGCTGTTCGACGAAA 60.959 57.895 12.67 2.31 0.00 3.46
1358 1769 1.298859 GCCAGGCTGTTCGACGAAAT 61.299 55.000 12.67 0.00 0.00 2.17
1359 1770 0.443869 CCAGGCTGTTCGACGAAATG 59.556 55.000 12.67 9.10 0.00 2.32
1360 1771 0.179215 CAGGCTGTTCGACGAAATGC 60.179 55.000 20.78 20.78 0.00 3.56
1361 1772 1.134694 GGCTGTTCGACGAAATGCC 59.865 57.895 27.63 27.63 35.98 4.40
1371 1782 2.583045 GAAATGCCAATGCCGCGG 60.583 61.111 24.05 24.05 36.33 6.46
1461 1872 1.300542 GCTCTACCCTCGCATGCTC 60.301 63.158 17.13 0.00 0.00 4.26
1719 2130 0.179048 CCATGATTGCCGGCTACTCA 60.179 55.000 29.70 25.27 0.00 3.41
1722 2133 2.511600 ATTGCCGGCTACTCACGC 60.512 61.111 29.70 0.00 0.00 5.34
1986 2397 1.376424 CCTGCTCCATGCGTTCAGT 60.376 57.895 0.00 0.00 46.63 3.41
2019 2430 0.321671 CGAATGTGGTGTCCTGGACT 59.678 55.000 26.03 5.30 33.15 3.85
2029 2440 0.908198 GTCCTGGACTGCCTTGATCT 59.092 55.000 19.53 0.00 34.31 2.75
2133 2544 0.898789 TCACCGTCTCCACCCTTCTC 60.899 60.000 0.00 0.00 0.00 2.87
2154 2574 2.596851 GGGCTGTGGCTCCTCAGAA 61.597 63.158 18.94 0.00 39.18 3.02
2187 2607 7.116075 ACATGCTACAAAAATCCATGCTTAT 57.884 32.000 0.00 0.00 37.41 1.73
2226 2646 2.174639 TGGGTCTTTGGATGTGTCTGTT 59.825 45.455 0.00 0.00 0.00 3.16
2242 2662 2.027625 GTTGGGAACTCGCTGGTCG 61.028 63.158 0.00 0.00 40.15 4.79
2286 2706 3.188786 GATGACGCGTGGGCAGTC 61.189 66.667 20.70 0.00 40.58 3.51
2300 2720 1.841663 GCAGTCGCGACAACAATGGT 61.842 55.000 37.85 14.63 0.00 3.55
2380 2800 1.228675 CCAAGCAAGGCCCTTGAGT 60.229 57.895 27.54 10.29 43.42 3.41
2385 2805 1.809567 GCAAGGCCCTTGAGTTGGTG 61.810 60.000 27.54 0.00 43.42 4.17
2390 2810 2.069165 GCCCTTGAGTTGGTGGTCCT 62.069 60.000 0.00 0.00 34.23 3.85
2418 2838 1.267932 CGTGAGGAGGTTCGTATCGAC 60.268 57.143 0.00 0.00 34.89 4.20
2448 2868 2.124778 GCCTGCTTCCTCTCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
2467 2887 3.197790 CTGCGACCTTGCCATCCG 61.198 66.667 0.00 0.00 0.00 4.18
2471 2891 1.515954 CGACCTTGCCATCCGTAGT 59.484 57.895 0.00 0.00 0.00 2.73
2478 2898 2.731571 GCCATCCGTAGTGCCTGGA 61.732 63.158 0.00 0.00 35.96 3.86
2527 2947 0.107459 GGGATTGAGCAGTCAGGTCC 60.107 60.000 0.00 0.00 44.10 4.46
2589 3009 1.208052 TGTGTGGAGGATGCTAAGAGC 59.792 52.381 0.00 0.00 42.82 4.09
2658 3078 2.638480 TATCTGGGCTGGCATACAAC 57.362 50.000 2.88 0.00 0.00 3.32
2663 3083 1.272369 TGGGCTGGCATACAACAATGA 60.272 47.619 2.88 0.00 0.00 2.57
2735 3155 4.446371 GCACAGCCTGATAGTATCACTTT 58.554 43.478 8.84 0.00 35.06 2.66
2847 3267 1.148310 CACAAAGGAGCCACTACACG 58.852 55.000 0.00 0.00 0.00 4.49
2873 3293 4.585955 TTCTGGATATGTTAGGACGAGC 57.414 45.455 0.00 0.00 0.00 5.03
2985 3405 5.121380 AGCTCCATAATGATCTGGTTGTT 57.879 39.130 0.00 0.00 34.03 2.83
3066 3486 0.038744 CCCTTTCAGGCATCAGTGGT 59.961 55.000 0.00 0.00 32.73 4.16
3067 3487 1.171308 CCTTTCAGGCATCAGTGGTG 58.829 55.000 0.00 0.00 0.00 4.17
3068 3488 0.524862 CTTTCAGGCATCAGTGGTGC 59.475 55.000 20.53 20.53 41.78 5.01
3069 3489 0.111061 TTTCAGGCATCAGTGGTGCT 59.889 50.000 26.79 11.05 42.16 4.40
3070 3490 0.321919 TTCAGGCATCAGTGGTGCTC 60.322 55.000 26.79 16.97 42.16 4.26
3071 3491 1.748122 CAGGCATCAGTGGTGCTCC 60.748 63.158 26.79 12.14 42.16 4.70
3072 3492 1.922369 AGGCATCAGTGGTGCTCCT 60.922 57.895 26.79 14.28 42.16 3.69
3073 3493 1.001641 GGCATCAGTGGTGCTCCTT 60.002 57.895 26.79 0.00 42.16 3.36
3074 3494 1.310933 GGCATCAGTGGTGCTCCTTG 61.311 60.000 26.79 5.10 42.16 3.61
3075 3495 1.310933 GCATCAGTGGTGCTCCTTGG 61.311 60.000 21.36 0.00 39.45 3.61
3076 3496 0.325933 CATCAGTGGTGCTCCTTGGA 59.674 55.000 6.34 1.20 34.23 3.53
3077 3497 1.067295 ATCAGTGGTGCTCCTTGGAA 58.933 50.000 6.34 0.00 34.23 3.53
3078 3498 0.843309 TCAGTGGTGCTCCTTGGAAA 59.157 50.000 6.34 0.00 34.23 3.13
3079 3499 0.954452 CAGTGGTGCTCCTTGGAAAC 59.046 55.000 6.34 0.00 34.23 2.78
3080 3500 0.550914 AGTGGTGCTCCTTGGAAACA 59.449 50.000 6.34 0.00 39.83 2.83
3081 3501 1.145738 AGTGGTGCTCCTTGGAAACAT 59.854 47.619 6.34 0.00 42.32 2.71
3082 3502 1.270550 GTGGTGCTCCTTGGAAACATG 59.729 52.381 6.34 0.00 42.32 3.21
3083 3503 1.144708 TGGTGCTCCTTGGAAACATGA 59.855 47.619 6.34 0.00 42.32 3.07
3084 3504 1.815003 GGTGCTCCTTGGAAACATGAG 59.185 52.381 0.00 0.00 42.32 2.90
3085 3505 2.508526 GTGCTCCTTGGAAACATGAGT 58.491 47.619 0.00 0.00 42.32 3.41
3086 3506 2.227388 GTGCTCCTTGGAAACATGAGTG 59.773 50.000 0.00 0.00 42.32 3.51
3087 3507 2.158623 TGCTCCTTGGAAACATGAGTGT 60.159 45.455 0.00 0.00 42.32 3.55
3088 3508 2.227388 GCTCCTTGGAAACATGAGTGTG 59.773 50.000 0.00 0.00 42.32 3.82
3089 3509 2.816087 CTCCTTGGAAACATGAGTGTGG 59.184 50.000 0.00 0.00 42.32 4.17
3153 3573 2.168521 AGCTAAAGCCTAACAGATGCGA 59.831 45.455 0.00 0.00 43.38 5.10
3158 3578 1.757118 AGCCTAACAGATGCGAGCTAA 59.243 47.619 0.00 0.00 0.00 3.09
3184 3604 4.287067 TCTGTTTCTCTATGCCAGGTTCTT 59.713 41.667 0.00 0.00 0.00 2.52
3208 3628 5.196695 GGATGCTTCCTATATGGATTTCCC 58.803 45.833 11.34 0.00 45.68 3.97
3209 3629 5.281193 GGATGCTTCCTATATGGATTTCCCA 60.281 44.000 11.34 0.00 45.68 4.37
3210 3630 7.304940 GGATGCTTCCTATATGGATTTCCCAC 61.305 46.154 11.34 0.00 45.68 4.61
3271 3710 2.106938 TCGACATCGAGCATGGGC 59.893 61.111 0.00 0.00 44.22 5.36
3283 3722 1.009829 GCATGGGCTTACGACAAGAG 58.990 55.000 0.00 0.00 36.96 2.85
3287 3726 0.796927 GGGCTTACGACAAGAGCAAC 59.203 55.000 5.84 0.00 38.14 4.17
3291 3730 1.125021 CTTACGACAAGAGCAACGCAG 59.875 52.381 0.00 0.00 0.00 5.18
3296 3735 1.537202 GACAAGAGCAACGCAGGATTT 59.463 47.619 0.00 0.00 0.00 2.17
3298 3737 2.287788 ACAAGAGCAACGCAGGATTTTG 60.288 45.455 0.00 0.00 0.00 2.44
3303 3742 1.689959 CAACGCAGGATTTTGTCAGC 58.310 50.000 0.00 0.00 0.00 4.26
3306 3745 1.577328 CGCAGGATTTTGTCAGCGGT 61.577 55.000 0.00 0.00 44.20 5.68
3308 3747 1.813513 CAGGATTTTGTCAGCGGTCT 58.186 50.000 0.00 0.00 0.00 3.85
3313 3752 3.981416 GGATTTTGTCAGCGGTCTTTTTC 59.019 43.478 0.00 0.00 0.00 2.29
3355 3794 6.845758 AGAAATTCCTCTGCATTGAAATCA 57.154 33.333 0.00 0.00 0.00 2.57
3357 3796 5.988310 AATTCCTCTGCATTGAAATCACA 57.012 34.783 0.00 0.00 0.00 3.58
3358 3797 6.540438 AATTCCTCTGCATTGAAATCACAT 57.460 33.333 0.00 0.00 0.00 3.21
3359 3798 4.976224 TCCTCTGCATTGAAATCACATG 57.024 40.909 0.00 0.00 0.00 3.21
3360 3799 4.591929 TCCTCTGCATTGAAATCACATGA 58.408 39.130 0.00 0.00 0.00 3.07
3361 3800 4.638865 TCCTCTGCATTGAAATCACATGAG 59.361 41.667 0.00 0.00 0.00 2.90
3362 3801 4.638865 CCTCTGCATTGAAATCACATGAGA 59.361 41.667 0.00 0.00 0.00 3.27
3363 3802 5.448768 CCTCTGCATTGAAATCACATGAGAC 60.449 44.000 0.00 0.00 0.00 3.36
3364 3803 5.005094 TCTGCATTGAAATCACATGAGACA 58.995 37.500 0.00 0.00 0.00 3.41
3365 3804 5.650703 TCTGCATTGAAATCACATGAGACAT 59.349 36.000 0.00 0.00 0.00 3.06
3366 3805 6.152154 TCTGCATTGAAATCACATGAGACATT 59.848 34.615 0.00 0.00 0.00 2.71
3367 3806 6.327154 TGCATTGAAATCACATGAGACATTC 58.673 36.000 0.00 6.63 0.00 2.67
3368 3807 6.152154 TGCATTGAAATCACATGAGACATTCT 59.848 34.615 16.19 1.62 0.00 2.40
3369 3808 7.337436 TGCATTGAAATCACATGAGACATTCTA 59.663 33.333 16.19 11.69 0.00 2.10
3370 3809 8.350722 GCATTGAAATCACATGAGACATTCTAT 58.649 33.333 16.19 12.90 0.00 1.98
3416 3856 3.011032 ACCCCATTCTGAATCAAGCTCTT 59.989 43.478 0.00 0.00 0.00 2.85
3418 3858 4.142227 CCCCATTCTGAATCAAGCTCTTTG 60.142 45.833 0.00 0.00 38.17 2.77
3431 3901 2.067766 GCTCTTTGAGAGTCACTGCAG 58.932 52.381 13.48 13.48 44.12 4.41
3455 3925 4.283467 TGCAGAGTATGGTATGTGGTATCC 59.717 45.833 0.00 0.00 0.00 2.59
3456 3926 4.283467 GCAGAGTATGGTATGTGGTATCCA 59.717 45.833 0.00 0.00 0.00 3.41
3486 3982 9.671279 AGTCAGTATACAATGTCAATGATTTGA 57.329 29.630 13.42 0.00 39.54 2.69
3487 3983 9.926751 GTCAGTATACAATGTCAATGATTTGAG 57.073 33.333 13.42 0.00 42.41 3.02
3488 3984 9.671279 TCAGTATACAATGTCAATGATTTGAGT 57.329 29.630 13.42 6.18 42.41 3.41
3493 3989 6.684686 ACAATGTCAATGATTTGAGTTCTGG 58.315 36.000 13.42 0.00 42.41 3.86
3494 3990 6.266103 ACAATGTCAATGATTTGAGTTCTGGT 59.734 34.615 13.42 0.00 42.41 4.00
3495 3991 7.448161 ACAATGTCAATGATTTGAGTTCTGGTA 59.552 33.333 13.42 0.00 42.41 3.25
3496 3992 8.298854 CAATGTCAATGATTTGAGTTCTGGTAA 58.701 33.333 3.68 0.00 42.41 2.85
3497 3993 7.439157 TGTCAATGATTTGAGTTCTGGTAAG 57.561 36.000 0.00 0.00 42.41 2.34
3498 3994 6.072508 TGTCAATGATTTGAGTTCTGGTAAGC 60.073 38.462 0.00 0.00 42.41 3.09
3499 3995 5.122239 TCAATGATTTGAGTTCTGGTAAGCG 59.878 40.000 0.00 0.00 36.94 4.68
3500 3996 4.002906 TGATTTGAGTTCTGGTAAGCGT 57.997 40.909 0.00 0.00 0.00 5.07
3501 3997 3.994392 TGATTTGAGTTCTGGTAAGCGTC 59.006 43.478 0.00 0.00 0.00 5.19
3502 3998 3.462483 TTTGAGTTCTGGTAAGCGTCA 57.538 42.857 0.00 0.00 0.00 4.35
3503 3999 3.678056 TTGAGTTCTGGTAAGCGTCAT 57.322 42.857 0.00 0.00 0.00 3.06
3504 4000 2.959516 TGAGTTCTGGTAAGCGTCATG 58.040 47.619 0.00 0.00 0.00 3.07
3505 4001 2.299013 TGAGTTCTGGTAAGCGTCATGT 59.701 45.455 0.00 0.00 0.00 3.21
3506 4002 2.668457 GAGTTCTGGTAAGCGTCATGTG 59.332 50.000 0.00 0.00 0.00 3.21
3507 4003 1.128692 GTTCTGGTAAGCGTCATGTGC 59.871 52.381 4.80 4.80 0.00 4.57
3508 4004 0.608130 TCTGGTAAGCGTCATGTGCT 59.392 50.000 9.01 9.01 46.68 4.40
3509 4005 1.822371 TCTGGTAAGCGTCATGTGCTA 59.178 47.619 14.05 0.56 43.14 3.49
3510 4006 2.232696 TCTGGTAAGCGTCATGTGCTAA 59.767 45.455 14.05 2.77 43.14 3.09
3511 4007 2.604914 CTGGTAAGCGTCATGTGCTAAG 59.395 50.000 14.05 7.54 43.14 2.18
3512 4008 2.232696 TGGTAAGCGTCATGTGCTAAGA 59.767 45.455 14.05 2.82 43.14 2.10
3513 4009 2.603560 GGTAAGCGTCATGTGCTAAGAC 59.396 50.000 14.05 12.13 43.14 3.01
3514 4010 2.455674 AAGCGTCATGTGCTAAGACA 57.544 45.000 14.05 0.00 43.14 3.41
3515 4011 2.001812 AGCGTCATGTGCTAAGACAG 57.998 50.000 12.45 0.00 41.87 3.51
3516 4012 1.002366 GCGTCATGTGCTAAGACAGG 58.998 55.000 5.60 0.00 32.68 4.00
3517 4013 1.002366 CGTCATGTGCTAAGACAGGC 58.998 55.000 0.00 0.00 32.68 4.85
3518 4014 1.672737 CGTCATGTGCTAAGACAGGCA 60.673 52.381 0.00 0.00 36.01 4.75
3519 4015 2.005451 GTCATGTGCTAAGACAGGCAG 58.995 52.381 0.00 0.00 39.22 4.85
3520 4016 1.901833 TCATGTGCTAAGACAGGCAGA 59.098 47.619 0.00 0.00 39.22 4.26
3521 4017 2.302733 TCATGTGCTAAGACAGGCAGAA 59.697 45.455 0.00 0.00 39.22 3.02
3543 4039 9.383519 CAGAATGCTTGGTCTAAACTCTAAATA 57.616 33.333 0.00 0.00 0.00 1.40
3545 4041 9.989869 GAATGCTTGGTCTAAACTCTAAATAAC 57.010 33.333 0.00 0.00 0.00 1.89
3546 4042 9.740710 AATGCTTGGTCTAAACTCTAAATAACT 57.259 29.630 0.00 0.00 0.00 2.24
3547 4043 9.740710 ATGCTTGGTCTAAACTCTAAATAACTT 57.259 29.630 0.00 0.00 0.00 2.66
3548 4044 9.216117 TGCTTGGTCTAAACTCTAAATAACTTC 57.784 33.333 0.00 0.00 0.00 3.01
3549 4045 9.216117 GCTTGGTCTAAACTCTAAATAACTTCA 57.784 33.333 0.00 0.00 0.00 3.02
3574 4110 9.242477 CAGATAGAATATCTAATGCCACATACG 57.758 37.037 0.00 0.00 31.96 3.06
3575 4111 8.972127 AGATAGAATATCTAATGCCACATACGT 58.028 33.333 0.00 0.00 31.96 3.57
3620 4156 1.561542 AGATTGTGGGGTAGCCTCTTG 59.438 52.381 11.48 0.00 0.00 3.02
3628 4164 3.333680 TGGGGTAGCCTCTTGAAGAAAAT 59.666 43.478 11.48 0.00 0.00 1.82
3629 4165 4.202673 TGGGGTAGCCTCTTGAAGAAAATT 60.203 41.667 11.48 0.00 0.00 1.82
3630 4166 5.014755 TGGGGTAGCCTCTTGAAGAAAATTA 59.985 40.000 11.48 0.00 0.00 1.40
3631 4167 5.590663 GGGGTAGCCTCTTGAAGAAAATTAG 59.409 44.000 11.48 0.00 0.00 1.73
3633 4169 6.884836 GGGTAGCCTCTTGAAGAAAATTAGAA 59.115 38.462 2.95 0.00 0.00 2.10
3635 4171 8.793592 GGTAGCCTCTTGAAGAAAATTAGAAAA 58.206 33.333 0.00 0.00 0.00 2.29
3646 4182 6.443792 AGAAAATTAGAAAAACCGCGAACAT 58.556 32.000 8.23 0.00 0.00 2.71
3647 4183 6.362283 AGAAAATTAGAAAAACCGCGAACATG 59.638 34.615 8.23 0.00 0.00 3.21
3648 4184 2.604969 TAGAAAAACCGCGAACATGC 57.395 45.000 8.23 0.00 0.00 4.06
3665 4201 7.360691 GCGAACATGCATAGATTGTAGAATGAT 60.361 37.037 0.00 0.00 34.15 2.45
3666 4202 7.955864 CGAACATGCATAGATTGTAGAATGATG 59.044 37.037 0.00 0.00 0.00 3.07
3673 4209 4.778579 AGATTGTAGAATGATGCAGCAGT 58.221 39.130 11.66 8.03 0.00 4.40
3678 4214 6.816134 TGTAGAATGATGCAGCAGTTTTTA 57.184 33.333 11.66 0.00 0.00 1.52
3688 4225 5.762045 TGCAGCAGTTTTTACAGAAGAATC 58.238 37.500 0.00 0.00 0.00 2.52
3690 4227 5.385617 CAGCAGTTTTTACAGAAGAATCCG 58.614 41.667 0.00 0.00 0.00 4.18
3692 4229 5.049405 AGCAGTTTTTACAGAAGAATCCGTG 60.049 40.000 0.00 0.00 0.00 4.94
3696 4233 1.271856 TACAGAAGAATCCGTGGGCA 58.728 50.000 0.00 0.00 0.00 5.36
3697 4234 0.036010 ACAGAAGAATCCGTGGGCAG 60.036 55.000 0.00 0.00 0.00 4.85
3698 4235 0.250234 CAGAAGAATCCGTGGGCAGA 59.750 55.000 0.00 0.00 0.00 4.26
3699 4236 0.984230 AGAAGAATCCGTGGGCAGAA 59.016 50.000 0.00 0.00 0.00 3.02
3700 4237 1.561542 AGAAGAATCCGTGGGCAGAAT 59.438 47.619 0.00 0.00 0.00 2.40
3701 4238 2.025887 AGAAGAATCCGTGGGCAGAATT 60.026 45.455 0.00 0.00 0.00 2.17
3702 4239 2.514458 AGAATCCGTGGGCAGAATTT 57.486 45.000 0.00 0.00 0.00 1.82
3703 4240 2.369394 AGAATCCGTGGGCAGAATTTC 58.631 47.619 0.00 0.00 0.00 2.17
3704 4241 2.025887 AGAATCCGTGGGCAGAATTTCT 60.026 45.455 0.00 0.00 0.00 2.52
3705 4242 3.199946 AGAATCCGTGGGCAGAATTTCTA 59.800 43.478 0.00 0.00 0.00 2.10
3706 4243 2.691409 TCCGTGGGCAGAATTTCTAG 57.309 50.000 0.00 0.00 0.00 2.43
3707 4244 1.209504 TCCGTGGGCAGAATTTCTAGG 59.790 52.381 0.00 0.00 0.00 3.02
3708 4245 1.668419 CGTGGGCAGAATTTCTAGGG 58.332 55.000 0.00 0.00 0.00 3.53
3709 4246 1.747206 CGTGGGCAGAATTTCTAGGGG 60.747 57.143 0.00 0.00 0.00 4.79
3710 4247 1.564348 GTGGGCAGAATTTCTAGGGGA 59.436 52.381 0.00 0.00 0.00 4.81
3711 4248 1.564348 TGGGCAGAATTTCTAGGGGAC 59.436 52.381 0.00 0.00 0.00 4.46
3712 4249 1.564348 GGGCAGAATTTCTAGGGGACA 59.436 52.381 0.00 0.00 0.00 4.02
3713 4250 2.025321 GGGCAGAATTTCTAGGGGACAA 60.025 50.000 0.00 0.00 0.00 3.18
3714 4251 3.373110 GGGCAGAATTTCTAGGGGACAAT 60.373 47.826 0.00 0.00 0.00 2.71
3715 4252 4.281657 GGCAGAATTTCTAGGGGACAATT 58.718 43.478 0.00 0.00 0.00 2.32
3716 4253 4.711846 GGCAGAATTTCTAGGGGACAATTT 59.288 41.667 0.00 0.00 0.00 1.82
3717 4254 5.187772 GGCAGAATTTCTAGGGGACAATTTT 59.812 40.000 0.00 0.00 0.00 1.82
3718 4255 6.379988 GGCAGAATTTCTAGGGGACAATTTTA 59.620 38.462 0.00 0.00 0.00 1.52
3719 4256 7.069950 GGCAGAATTTCTAGGGGACAATTTTAT 59.930 37.037 0.00 0.00 0.00 1.40
3720 4257 7.922811 GCAGAATTTCTAGGGGACAATTTTATG 59.077 37.037 0.00 0.00 0.00 1.90
3721 4258 8.971073 CAGAATTTCTAGGGGACAATTTTATGT 58.029 33.333 0.00 0.00 35.90 2.29
3725 4262 7.817418 TTCTAGGGGACAATTTTATGTATGC 57.183 36.000 0.00 0.00 32.57 3.14
3726 4263 7.149202 TCTAGGGGACAATTTTATGTATGCT 57.851 36.000 0.00 0.00 32.57 3.79
3727 4264 6.998074 TCTAGGGGACAATTTTATGTATGCTG 59.002 38.462 0.00 0.00 32.57 4.41
3728 4265 5.518865 AGGGGACAATTTTATGTATGCTGT 58.481 37.500 0.00 0.00 32.57 4.40
3729 4266 5.594317 AGGGGACAATTTTATGTATGCTGTC 59.406 40.000 0.00 0.00 32.57 3.51
3730 4267 5.359576 GGGGACAATTTTATGTATGCTGTCA 59.640 40.000 0.00 0.00 34.71 3.58
3731 4268 6.460123 GGGGACAATTTTATGTATGCTGTCAG 60.460 42.308 0.00 0.00 34.71 3.51
3732 4269 6.460123 GGGACAATTTTATGTATGCTGTCAGG 60.460 42.308 1.14 0.00 34.71 3.86
3733 4270 6.318648 GGACAATTTTATGTATGCTGTCAGGA 59.681 38.462 1.14 0.00 34.71 3.86
3734 4271 7.148086 GGACAATTTTATGTATGCTGTCAGGAA 60.148 37.037 0.00 0.00 34.71 3.36
3735 4272 8.121305 ACAATTTTATGTATGCTGTCAGGAAA 57.879 30.769 0.00 0.00 0.00 3.13
3736 4273 8.584157 ACAATTTTATGTATGCTGTCAGGAAAA 58.416 29.630 0.00 0.00 0.00 2.29
3737 4274 9.590451 CAATTTTATGTATGCTGTCAGGAAAAT 57.410 29.630 0.00 0.00 31.02 1.82
3744 4281 9.851686 ATGTATGCTGTCAGGAAAATATAAGAA 57.148 29.630 0.00 0.00 0.00 2.52
3745 4282 9.851686 TGTATGCTGTCAGGAAAATATAAGAAT 57.148 29.630 0.00 0.00 0.00 2.40
3747 4284 8.757982 ATGCTGTCAGGAAAATATAAGAATGT 57.242 30.769 0.00 0.00 0.00 2.71
3748 4285 7.988737 TGCTGTCAGGAAAATATAAGAATGTG 58.011 34.615 1.14 0.00 0.00 3.21
3749 4286 7.828717 TGCTGTCAGGAAAATATAAGAATGTGA 59.171 33.333 1.14 0.00 0.00 3.58
3750 4287 8.125448 GCTGTCAGGAAAATATAAGAATGTGAC 58.875 37.037 1.14 0.00 0.00 3.67
3751 4288 9.166173 CTGTCAGGAAAATATAAGAATGTGACA 57.834 33.333 0.00 0.00 38.52 3.58
3752 4289 9.166173 TGTCAGGAAAATATAAGAATGTGACAG 57.834 33.333 0.00 0.00 36.54 3.51
3753 4290 9.167311 GTCAGGAAAATATAAGAATGTGACAGT 57.833 33.333 0.00 0.00 32.63 3.55
3764 4301 9.823647 ATAAGAATGTGACAGTAGTATTTCTGG 57.176 33.333 0.00 0.00 36.17 3.86
3831 4403 7.148086 CCCTGCACTAACAGCAATTTTATAAGA 60.148 37.037 0.00 0.00 42.17 2.10
3833 4405 7.250569 TGCACTAACAGCAATTTTATAAGAGC 58.749 34.615 0.00 0.00 39.39 4.09
3844 4416 9.023967 GCAATTTTATAAGAGCGAAATGATGTT 57.976 29.630 0.00 0.00 0.00 2.71
3879 4451 2.982488 CAGGGGCAAGGATAGGATAAGT 59.018 50.000 0.00 0.00 0.00 2.24
3880 4452 2.982488 AGGGGCAAGGATAGGATAAGTG 59.018 50.000 0.00 0.00 0.00 3.16
3882 4454 3.138468 GGGGCAAGGATAGGATAAGTGTT 59.862 47.826 0.00 0.00 0.00 3.32
3937 4509 1.086696 CCATCGACATTTGCCGAAGT 58.913 50.000 0.00 0.00 38.36 3.01
3938 4510 1.202065 CCATCGACATTTGCCGAAGTG 60.202 52.381 0.00 0.00 38.36 3.16
3939 4511 1.464608 CATCGACATTTGCCGAAGTGT 59.535 47.619 0.00 0.00 38.36 3.55
3940 4512 0.865111 TCGACATTTGCCGAAGTGTG 59.135 50.000 0.00 0.00 0.00 3.82
3941 4513 0.110238 CGACATTTGCCGAAGTGTGG 60.110 55.000 0.00 0.00 0.00 4.17
3948 4520 3.655481 CCGAAGTGTGGCTGGTTC 58.345 61.111 0.00 0.00 0.00 3.62
3949 4521 1.071471 CCGAAGTGTGGCTGGTTCT 59.929 57.895 0.00 0.00 0.00 3.01
3950 4522 0.535102 CCGAAGTGTGGCTGGTTCTT 60.535 55.000 0.00 0.00 0.00 2.52
3951 4523 1.270625 CCGAAGTGTGGCTGGTTCTTA 60.271 52.381 0.00 0.00 0.00 2.10
3952 4524 2.615493 CCGAAGTGTGGCTGGTTCTTAT 60.615 50.000 0.00 0.00 0.00 1.73
3953 4525 3.369052 CCGAAGTGTGGCTGGTTCTTATA 60.369 47.826 0.00 0.00 0.00 0.98
3954 4526 3.865745 CGAAGTGTGGCTGGTTCTTATAG 59.134 47.826 0.00 0.00 0.00 1.31
3955 4527 3.914426 AGTGTGGCTGGTTCTTATAGG 57.086 47.619 0.00 0.00 0.00 2.57
3956 4528 3.182152 AGTGTGGCTGGTTCTTATAGGT 58.818 45.455 0.00 0.00 0.00 3.08
3964 4536 4.651962 GCTGGTTCTTATAGGTCCTTCTCT 59.348 45.833 0.00 0.00 0.00 3.10
3982 4554 3.379688 TCTCTGATCCTTCACTCGTGATG 59.620 47.826 0.00 3.50 39.64 3.07
3986 4558 1.795768 TCCTTCACTCGTGATGTTGC 58.204 50.000 0.00 0.00 39.64 4.17
4002 4574 2.297315 TGTTGCCGGTAATTGATTGCAA 59.703 40.909 8.64 0.00 38.60 4.08
4038 4633 5.740290 ATTCTTCGTAGACTTTTCTGGGA 57.260 39.130 0.00 0.00 34.32 4.37
4039 4634 5.740290 TTCTTCGTAGACTTTTCTGGGAT 57.260 39.130 0.00 0.00 34.32 3.85
4040 4635 6.845758 TTCTTCGTAGACTTTTCTGGGATA 57.154 37.500 0.00 0.00 34.32 2.59
4041 4636 7.419711 TTCTTCGTAGACTTTTCTGGGATAT 57.580 36.000 0.00 0.00 34.32 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.547753 GCTGGAAAAGAAGTAGATACATGATTA 57.452 33.333 0.00 0.00 0.00 1.75
23 24 9.418045 GAGATATGCTGGAAAAGAAGTAGATAC 57.582 37.037 0.00 0.00 0.00 2.24
24 25 9.147732 TGAGATATGCTGGAAAAGAAGTAGATA 57.852 33.333 0.00 0.00 0.00 1.98
25 26 8.027524 TGAGATATGCTGGAAAAGAAGTAGAT 57.972 34.615 0.00 0.00 0.00 1.98
26 27 7.423844 TGAGATATGCTGGAAAAGAAGTAGA 57.576 36.000 0.00 0.00 0.00 2.59
29 30 6.421485 ACATGAGATATGCTGGAAAAGAAGT 58.579 36.000 0.00 0.00 0.00 3.01
31 32 5.824624 GGACATGAGATATGCTGGAAAAGAA 59.175 40.000 0.00 0.00 0.00 2.52
32 33 5.104402 TGGACATGAGATATGCTGGAAAAGA 60.104 40.000 0.00 0.00 0.00 2.52
33 34 5.128205 TGGACATGAGATATGCTGGAAAAG 58.872 41.667 0.00 0.00 0.00 2.27
34 35 5.114764 TGGACATGAGATATGCTGGAAAA 57.885 39.130 0.00 0.00 0.00 2.29
61 62 1.903877 CGTGAGAGTGCCTTCCCCAT 61.904 60.000 0.00 0.00 0.00 4.00
75 76 2.361357 ACCCCGAGGTCTCGTGAG 60.361 66.667 17.50 9.11 46.45 3.51
114 115 4.541779 GATGCAGATAGTAGTTCAGGACG 58.458 47.826 0.00 0.00 0.00 4.79
140 141 2.203153 GGGGAACGCCGCATGTAT 60.203 61.111 0.00 0.00 45.89 2.29
238 239 0.343372 TGGTTCAGCCCTCCTATCCT 59.657 55.000 0.00 0.00 36.04 3.24
408 460 3.947834 CCACAAAAGGACAGTCACTCTTT 59.052 43.478 2.17 0.32 0.00 2.52
416 468 1.340991 ACAGCACCACAAAAGGACAGT 60.341 47.619 0.00 0.00 0.00 3.55
478 530 2.566724 CCCTCTGCTGTCTTCTCTTCTT 59.433 50.000 0.00 0.00 0.00 2.52
495 547 2.898612 TGCATCTCATCTCATCTCCCTC 59.101 50.000 0.00 0.00 0.00 4.30
497 549 3.864243 GATGCATCTCATCTCATCTCCC 58.136 50.000 19.70 0.00 46.29 4.30
507 559 6.724893 TTGATTTGATTGGATGCATCTCAT 57.275 33.333 25.28 17.02 38.32 2.90
508 560 5.451381 GCTTGATTTGATTGGATGCATCTCA 60.451 40.000 25.28 18.15 0.00 3.27
509 561 4.982916 GCTTGATTTGATTGGATGCATCTC 59.017 41.667 25.28 15.83 0.00 2.75
511 563 4.945246 AGCTTGATTTGATTGGATGCATC 58.055 39.130 18.81 18.81 0.00 3.91
512 564 4.404394 TGAGCTTGATTTGATTGGATGCAT 59.596 37.500 0.00 0.00 0.00 3.96
513 565 3.764972 TGAGCTTGATTTGATTGGATGCA 59.235 39.130 0.00 0.00 0.00 3.96
514 566 4.110482 GTGAGCTTGATTTGATTGGATGC 58.890 43.478 0.00 0.00 0.00 3.91
515 567 5.578005 AGTGAGCTTGATTTGATTGGATG 57.422 39.130 0.00 0.00 0.00 3.51
549 601 6.002704 GTGGCATCCTTAGATTGATCTGATT 58.997 40.000 3.79 0.00 37.76 2.57
550 602 5.310068 AGTGGCATCCTTAGATTGATCTGAT 59.690 40.000 3.79 0.00 37.76 2.90
551 603 4.657504 AGTGGCATCCTTAGATTGATCTGA 59.342 41.667 3.79 0.00 37.76 3.27
566 618 3.932089 ACAACAACAACAAAAGTGGCATC 59.068 39.130 0.00 0.00 0.00 3.91
581 633 6.459257 TTGATGAACAACAACAACAACAAC 57.541 33.333 0.00 0.00 36.59 3.32
624 1004 7.582667 TGATCTGCTTCATTCATTCATTCAT 57.417 32.000 0.00 0.00 0.00 2.57
625 1005 7.068226 ACATGATCTGCTTCATTCATTCATTCA 59.932 33.333 0.00 0.00 34.09 2.57
626 1006 7.426410 ACATGATCTGCTTCATTCATTCATTC 58.574 34.615 0.00 0.00 34.09 2.67
627 1007 7.348080 ACATGATCTGCTTCATTCATTCATT 57.652 32.000 0.00 0.00 34.09 2.57
631 1011 6.377429 ACTCAACATGATCTGCTTCATTCATT 59.623 34.615 0.00 0.00 34.09 2.57
632 1012 5.886474 ACTCAACATGATCTGCTTCATTCAT 59.114 36.000 0.00 0.00 34.09 2.57
633 1013 5.250982 ACTCAACATGATCTGCTTCATTCA 58.749 37.500 0.00 0.00 34.09 2.57
634 1014 5.220815 GGACTCAACATGATCTGCTTCATTC 60.221 44.000 0.00 0.00 34.09 2.67
635 1015 4.639310 GGACTCAACATGATCTGCTTCATT 59.361 41.667 0.00 0.00 34.09 2.57
638 1018 3.603532 TGGACTCAACATGATCTGCTTC 58.396 45.455 0.00 0.00 0.00 3.86
639 1019 3.708403 TGGACTCAACATGATCTGCTT 57.292 42.857 0.00 0.00 0.00 3.91
640 1020 3.928005 ATGGACTCAACATGATCTGCT 57.072 42.857 0.00 0.00 0.00 4.24
641 1021 4.439700 CCAAATGGACTCAACATGATCTGC 60.440 45.833 0.00 0.00 37.39 4.26
642 1022 4.945543 TCCAAATGGACTCAACATGATCTG 59.054 41.667 0.00 0.00 39.78 2.90
643 1023 5.183530 TCCAAATGGACTCAACATGATCT 57.816 39.130 0.00 0.00 39.78 2.75
692 1072 8.629158 ACAACTATTTGTTTGTAGATGCTTTGA 58.371 29.630 0.00 0.00 43.89 2.69
742 1125 1.625315 ACAGCAGTAGCATTGACCTGA 59.375 47.619 0.00 0.00 45.49 3.86
743 1126 2.105006 ACAGCAGTAGCATTGACCTG 57.895 50.000 0.00 0.00 45.49 4.00
744 1127 2.867109 AACAGCAGTAGCATTGACCT 57.133 45.000 0.00 0.00 45.49 3.85
745 1128 6.867662 ATATAAACAGCAGTAGCATTGACC 57.132 37.500 0.00 0.00 45.49 4.02
779 1162 8.763601 AGGCTCAAACATACTAGTATTTTCTCT 58.236 33.333 12.87 5.07 0.00 3.10
780 1163 8.950208 AGGCTCAAACATACTAGTATTTTCTC 57.050 34.615 12.87 4.06 0.00 2.87
781 1164 8.763601 AGAGGCTCAAACATACTAGTATTTTCT 58.236 33.333 18.26 6.22 0.00 2.52
787 1170 9.817809 CATTTTAGAGGCTCAAACATACTAGTA 57.182 33.333 18.26 4.77 0.00 1.82
788 1171 8.322091 ACATTTTAGAGGCTCAAACATACTAGT 58.678 33.333 18.26 0.00 0.00 2.57
789 1172 8.607459 CACATTTTAGAGGCTCAAACATACTAG 58.393 37.037 18.26 0.00 0.00 2.57
790 1173 8.100791 ACACATTTTAGAGGCTCAAACATACTA 58.899 33.333 18.26 0.00 0.00 1.82
791 1174 6.942576 ACACATTTTAGAGGCTCAAACATACT 59.057 34.615 18.26 0.00 0.00 2.12
792 1175 7.023575 CACACATTTTAGAGGCTCAAACATAC 58.976 38.462 18.26 0.00 0.00 2.39
793 1176 6.939730 TCACACATTTTAGAGGCTCAAACATA 59.060 34.615 18.26 0.00 0.00 2.29
794 1177 5.769662 TCACACATTTTAGAGGCTCAAACAT 59.230 36.000 18.26 0.25 0.00 2.71
795 1178 5.129634 TCACACATTTTAGAGGCTCAAACA 58.870 37.500 18.26 0.00 0.00 2.83
796 1179 5.239525 ACTCACACATTTTAGAGGCTCAAAC 59.760 40.000 18.26 0.00 32.52 2.93
797 1180 5.239306 CACTCACACATTTTAGAGGCTCAAA 59.761 40.000 18.26 9.83 32.52 2.69
798 1181 4.756642 CACTCACACATTTTAGAGGCTCAA 59.243 41.667 18.26 6.29 32.52 3.02
799 1182 4.040339 TCACTCACACATTTTAGAGGCTCA 59.960 41.667 18.26 0.00 32.52 4.26
800 1183 4.569943 TCACTCACACATTTTAGAGGCTC 58.430 43.478 6.34 6.34 32.52 4.70
801 1184 4.623932 TCACTCACACATTTTAGAGGCT 57.376 40.909 0.00 0.00 32.52 4.58
802 1185 4.154918 CCTTCACTCACACATTTTAGAGGC 59.845 45.833 0.00 0.00 32.52 4.70
803 1186 5.551233 TCCTTCACTCACACATTTTAGAGG 58.449 41.667 0.00 0.00 32.52 3.69
804 1187 7.496529 TTTCCTTCACTCACACATTTTAGAG 57.503 36.000 0.00 0.00 0.00 2.43
805 1188 7.040478 CCATTTCCTTCACTCACACATTTTAGA 60.040 37.037 0.00 0.00 0.00 2.10
806 1189 7.040478 TCCATTTCCTTCACTCACACATTTTAG 60.040 37.037 0.00 0.00 0.00 1.85
807 1190 6.775142 TCCATTTCCTTCACTCACACATTTTA 59.225 34.615 0.00 0.00 0.00 1.52
808 1191 5.598005 TCCATTTCCTTCACTCACACATTTT 59.402 36.000 0.00 0.00 0.00 1.82
809 1192 5.139727 TCCATTTCCTTCACTCACACATTT 58.860 37.500 0.00 0.00 0.00 2.32
810 1193 4.728772 TCCATTTCCTTCACTCACACATT 58.271 39.130 0.00 0.00 0.00 2.71
811 1194 4.371624 TCCATTTCCTTCACTCACACAT 57.628 40.909 0.00 0.00 0.00 3.21
814 1197 8.717717 AGATATAATCCATTTCCTTCACTCACA 58.282 33.333 0.00 0.00 0.00 3.58
841 1224 8.664992 TCCAGATAGATAGACTCAAGATGTAGT 58.335 37.037 0.00 0.00 0.00 2.73
842 1225 9.685276 ATCCAGATAGATAGACTCAAGATGTAG 57.315 37.037 0.00 0.00 0.00 2.74
845 1228 9.642327 CAAATCCAGATAGATAGACTCAAGATG 57.358 37.037 0.00 0.00 0.00 2.90
881 1277 9.671279 ACTTTCTTTCCATTCAGTTTTCAAAAT 57.329 25.926 0.00 0.00 0.00 1.82
940 1340 5.104735 TCAGAGTCAGAGTCAGCTACAGATA 60.105 44.000 8.03 0.00 0.00 1.98
942 1342 3.008485 TCAGAGTCAGAGTCAGCTACAGA 59.992 47.826 8.03 0.00 0.00 3.41
957 1357 3.436704 CACTCAGAGTCAGAGTCAGAGTC 59.563 52.174 23.90 11.44 40.86 3.36
958 1358 3.072330 TCACTCAGAGTCAGAGTCAGAGT 59.928 47.826 21.95 21.95 42.71 3.24
959 1359 3.673902 TCACTCAGAGTCAGAGTCAGAG 58.326 50.000 20.86 20.86 44.11 3.35
960 1360 3.673902 CTCACTCAGAGTCAGAGTCAGA 58.326 50.000 14.76 9.71 44.11 3.27
961 1361 2.162208 GCTCACTCAGAGTCAGAGTCAG 59.838 54.545 14.76 13.10 44.11 3.51
962 1362 2.158559 GCTCACTCAGAGTCAGAGTCA 58.841 52.381 14.76 2.02 44.11 3.41
1044 1455 4.457496 CTCTGGCCGACGCATGGT 62.457 66.667 0.00 0.00 36.38 3.55
1226 1637 1.056103 CTGCGCGTGTATCTGATAGC 58.944 55.000 8.43 0.00 0.00 2.97
1230 1641 2.202743 GCCTGCGCGTGTATCTGA 60.203 61.111 8.43 0.00 0.00 3.27
1356 1767 3.520862 CTCCGCGGCATTGGCATT 61.521 61.111 23.51 0.00 43.71 3.56
1881 2292 2.478134 CTCCAGAGCAAACTTGAAGACG 59.522 50.000 0.00 0.00 0.00 4.18
1986 2397 2.894257 ATTCGGGCTGTCTGTGGCA 61.894 57.895 0.00 0.00 0.00 4.92
2019 2430 1.339438 GCAAGTCCAGAGATCAAGGCA 60.339 52.381 0.00 0.00 0.00 4.75
2029 2440 1.672030 CATGGCGTGCAAGTCCAGA 60.672 57.895 17.34 0.00 32.78 3.86
2133 2544 2.045536 GAGGAGCCACAGCCCTTG 60.046 66.667 0.00 0.00 39.09 3.61
2142 2553 2.555664 AGGAAAGATTCTGAGGAGCCA 58.444 47.619 0.00 0.00 0.00 4.75
2143 2554 3.452627 TGTAGGAAAGATTCTGAGGAGCC 59.547 47.826 0.00 0.00 0.00 4.70
2154 2574 7.615365 TGGATTTTTGTAGCATGTAGGAAAGAT 59.385 33.333 0.00 0.00 0.00 2.40
2187 2607 0.535780 CAAGGCTGGTCTTGAGCACA 60.536 55.000 9.05 0.00 44.98 4.57
2226 2646 2.599281 TCGACCAGCGAGTTCCCA 60.599 61.111 0.00 0.00 45.59 4.37
2242 2662 6.515272 TCTTGCAAACCTGGAATAAAGATC 57.485 37.500 0.00 0.00 31.82 2.75
2286 2706 0.110688 CACAGACCATTGTTGTCGCG 60.111 55.000 0.00 0.00 37.80 5.87
2300 2720 0.108585 GAGGTTGTCCCTTGCACAGA 59.891 55.000 0.00 0.00 46.51 3.41
2380 2800 1.142060 ACGAAACATGAGGACCACCAA 59.858 47.619 0.00 0.00 38.94 3.67
2390 2810 2.609491 CGAACCTCCTCACGAAACATGA 60.609 50.000 0.00 0.00 0.00 3.07
2418 2838 2.383527 GCAGGCGAGACTGAAACCG 61.384 63.158 10.61 0.00 40.97 4.44
2448 2868 3.869272 GATGGCAAGGTCGCAGCG 61.869 66.667 9.06 9.06 0.00 5.18
2471 2891 1.455402 TGCAAGTGCTTTCCAGGCA 60.455 52.632 4.69 0.00 42.66 4.75
2589 3009 2.744202 CTCCCTGATTGAGTGGAAAACG 59.256 50.000 0.00 0.00 0.00 3.60
2658 3078 4.212847 AGCGCTTCATAATAGCACTCATTG 59.787 41.667 2.64 0.00 38.55 2.82
2663 3083 3.126831 GACAGCGCTTCATAATAGCACT 58.873 45.455 7.50 0.00 38.55 4.40
2727 3147 3.969287 AGCACAGCAGAGAAAGTGATA 57.031 42.857 0.00 0.00 33.99 2.15
2847 3267 4.985409 CGTCCTAACATATCCAGAAAGAGC 59.015 45.833 0.00 0.00 0.00 4.09
2873 3293 2.796651 CCTCCGTAAGACGACCCG 59.203 66.667 0.00 0.00 46.05 5.28
2922 3342 1.623163 TGTACATGGACACGTCAGGA 58.377 50.000 6.68 0.00 0.00 3.86
2985 3405 4.158394 GCCTTCCTTGTGATATTTTCTGCA 59.842 41.667 0.00 0.00 0.00 4.41
3066 3486 2.158623 ACACTCATGTTTCCAAGGAGCA 60.159 45.455 0.00 0.00 34.46 4.26
3067 3487 2.227388 CACACTCATGTTTCCAAGGAGC 59.773 50.000 0.00 0.00 36.72 4.70
3068 3488 2.816087 CCACACTCATGTTTCCAAGGAG 59.184 50.000 0.00 0.00 36.72 3.69
3069 3489 2.174639 ACCACACTCATGTTTCCAAGGA 59.825 45.455 0.00 0.00 36.72 3.36
3070 3490 2.294233 CACCACACTCATGTTTCCAAGG 59.706 50.000 0.00 0.00 36.72 3.61
3071 3491 2.287788 GCACCACACTCATGTTTCCAAG 60.288 50.000 0.00 0.00 36.72 3.61
3072 3492 1.680735 GCACCACACTCATGTTTCCAA 59.319 47.619 0.00 0.00 36.72 3.53
3073 3493 1.133823 AGCACCACACTCATGTTTCCA 60.134 47.619 0.00 0.00 36.72 3.53
3074 3494 1.537202 GAGCACCACACTCATGTTTCC 59.463 52.381 0.00 0.00 36.72 3.13
3075 3495 1.537202 GGAGCACCACACTCATGTTTC 59.463 52.381 0.00 0.00 36.72 2.78
3076 3496 1.133823 TGGAGCACCACACTCATGTTT 60.134 47.619 0.00 0.00 41.77 2.83
3077 3497 0.473755 TGGAGCACCACACTCATGTT 59.526 50.000 0.00 0.00 41.77 2.71
3078 3498 2.144952 TGGAGCACCACACTCATGT 58.855 52.632 0.00 0.00 41.77 3.21
3088 3508 0.883833 CTGTGTTTCCATGGAGCACC 59.116 55.000 31.34 20.94 0.00 5.01
3089 3509 0.883833 CCTGTGTTTCCATGGAGCAC 59.116 55.000 29.56 29.56 0.00 4.40
3153 3573 5.365025 TGGCATAGAGAAACAGATCTTAGCT 59.635 40.000 0.00 0.00 0.00 3.32
3158 3578 4.036518 ACCTGGCATAGAGAAACAGATCT 58.963 43.478 0.00 0.00 0.00 2.75
3213 3633 8.478066 GGAATAATCCTTGTGGCTCTTATTTTT 58.522 33.333 0.00 0.00 42.93 1.94
3234 3660 6.127168 TGTCGAAAGAAATAGCCTGAGGAATA 60.127 38.462 0.65 0.00 45.01 1.75
3240 3666 4.112634 CGATGTCGAAAGAAATAGCCTGA 58.887 43.478 0.00 0.00 45.01 3.86
3242 3668 4.386867 TCGATGTCGAAAGAAATAGCCT 57.613 40.909 2.12 0.00 46.30 4.58
3271 3710 1.125021 CTGCGTTGCTCTTGTCGTAAG 59.875 52.381 0.00 0.00 0.00 2.34
3273 3712 0.666274 CCTGCGTTGCTCTTGTCGTA 60.666 55.000 0.00 0.00 0.00 3.43
3275 3714 1.016130 ATCCTGCGTTGCTCTTGTCG 61.016 55.000 0.00 0.00 0.00 4.35
3278 3717 2.287788 ACAAAATCCTGCGTTGCTCTTG 60.288 45.455 0.00 0.00 0.00 3.02
3283 3722 1.689959 CTGACAAAATCCTGCGTTGC 58.310 50.000 0.00 0.00 0.00 4.17
3287 3726 1.135315 CCGCTGACAAAATCCTGCG 59.865 57.895 0.00 0.00 44.08 5.18
3291 3730 3.643159 AAAAGACCGCTGACAAAATCC 57.357 42.857 0.00 0.00 0.00 3.01
3296 3735 2.158813 AGAGGAAAAAGACCGCTGACAA 60.159 45.455 0.00 0.00 36.30 3.18
3298 3737 2.171341 AGAGGAAAAAGACCGCTGAC 57.829 50.000 0.00 0.00 36.30 3.51
3341 3780 5.005094 TGTCTCATGTGATTTCAATGCAGA 58.995 37.500 0.02 0.00 0.00 4.26
3373 3812 9.722317 TGGGGTGGAACATAATCTATTTTATTT 57.278 29.630 0.00 0.00 44.52 1.40
3374 3813 9.897040 ATGGGGTGGAACATAATCTATTTTATT 57.103 29.630 0.00 0.00 44.52 1.40
3377 3816 8.067488 AGAATGGGGTGGAACATAATCTATTTT 58.933 33.333 0.00 0.00 44.52 1.82
3431 3901 3.543680 ACCACATACCATACTCTGCAC 57.456 47.619 0.00 0.00 0.00 4.57
3455 3925 9.586435 TCATTGACATTGTATACTGACTAAGTG 57.414 33.333 4.17 0.00 40.26 3.16
3460 3930 9.671279 TCAAATCATTGACATTGTATACTGACT 57.329 29.630 4.17 0.00 40.59 3.41
3461 3931 9.926751 CTCAAATCATTGACATTGTATACTGAC 57.073 33.333 4.17 0.00 40.59 3.51
3484 3980 2.299013 ACATGACGCTTACCAGAACTCA 59.701 45.455 0.00 0.00 0.00 3.41
3485 3981 2.668457 CACATGACGCTTACCAGAACTC 59.332 50.000 0.00 0.00 0.00 3.01
3486 3982 2.688507 CACATGACGCTTACCAGAACT 58.311 47.619 0.00 0.00 0.00 3.01
3487 3983 1.128692 GCACATGACGCTTACCAGAAC 59.871 52.381 0.00 0.00 0.00 3.01
3488 3984 1.001974 AGCACATGACGCTTACCAGAA 59.998 47.619 0.00 0.00 35.82 3.02
3489 3985 0.608130 AGCACATGACGCTTACCAGA 59.392 50.000 0.00 0.00 35.82 3.86
3490 3986 2.293677 TAGCACATGACGCTTACCAG 57.706 50.000 17.30 0.00 40.96 4.00
3491 3987 2.232696 TCTTAGCACATGACGCTTACCA 59.767 45.455 17.30 0.00 40.96 3.25
3492 3988 2.603560 GTCTTAGCACATGACGCTTACC 59.396 50.000 17.30 3.38 40.96 2.85
3493 3989 3.250744 TGTCTTAGCACATGACGCTTAC 58.749 45.455 17.30 13.72 40.96 2.34
3494 3990 3.511699 CTGTCTTAGCACATGACGCTTA 58.488 45.455 17.30 9.36 40.96 3.09
3495 3991 2.341257 CTGTCTTAGCACATGACGCTT 58.659 47.619 17.30 4.93 40.96 4.68
3496 3992 1.404717 CCTGTCTTAGCACATGACGCT 60.405 52.381 16.52 16.52 43.62 5.07
3497 3993 1.002366 CCTGTCTTAGCACATGACGC 58.998 55.000 0.00 1.03 34.74 5.19
3498 3994 1.002366 GCCTGTCTTAGCACATGACG 58.998 55.000 0.00 0.00 34.74 4.35
3499 3995 2.005451 CTGCCTGTCTTAGCACATGAC 58.995 52.381 0.00 0.00 34.68 3.06
3500 3996 1.901833 TCTGCCTGTCTTAGCACATGA 59.098 47.619 0.00 0.00 34.68 3.07
3501 3997 2.391616 TCTGCCTGTCTTAGCACATG 57.608 50.000 0.00 0.00 34.68 3.21
3502 3998 3.276857 CATTCTGCCTGTCTTAGCACAT 58.723 45.455 0.00 0.00 34.68 3.21
3503 3999 2.703416 CATTCTGCCTGTCTTAGCACA 58.297 47.619 0.00 0.00 34.68 4.57
3504 4000 1.399791 GCATTCTGCCTGTCTTAGCAC 59.600 52.381 0.00 0.00 37.42 4.40
3505 4001 1.280133 AGCATTCTGCCTGTCTTAGCA 59.720 47.619 0.00 0.00 46.52 3.49
3506 4002 2.035530 AGCATTCTGCCTGTCTTAGC 57.964 50.000 0.00 0.00 46.52 3.09
3507 4003 2.681848 CCAAGCATTCTGCCTGTCTTAG 59.318 50.000 0.00 0.00 46.52 2.18
3508 4004 2.040278 ACCAAGCATTCTGCCTGTCTTA 59.960 45.455 0.00 0.00 46.52 2.10
3509 4005 1.202976 ACCAAGCATTCTGCCTGTCTT 60.203 47.619 0.00 0.00 46.52 3.01
3510 4006 0.403271 ACCAAGCATTCTGCCTGTCT 59.597 50.000 0.00 0.00 46.52 3.41
3511 4007 0.807496 GACCAAGCATTCTGCCTGTC 59.193 55.000 0.00 0.00 46.52 3.51
3512 4008 0.403271 AGACCAAGCATTCTGCCTGT 59.597 50.000 0.00 0.00 46.52 4.00
3513 4009 2.408271 TAGACCAAGCATTCTGCCTG 57.592 50.000 0.00 0.00 46.52 4.85
3514 4010 3.084786 GTTTAGACCAAGCATTCTGCCT 58.915 45.455 0.00 0.00 46.52 4.75
3515 4011 3.084786 AGTTTAGACCAAGCATTCTGCC 58.915 45.455 0.00 0.00 46.52 4.85
3516 4012 4.006319 AGAGTTTAGACCAAGCATTCTGC 58.994 43.478 0.00 0.00 45.46 4.26
3517 4013 7.672983 TTTAGAGTTTAGACCAAGCATTCTG 57.327 36.000 0.00 0.00 0.00 3.02
3518 4014 9.959721 TTATTTAGAGTTTAGACCAAGCATTCT 57.040 29.630 0.00 0.00 0.00 2.40
3519 4015 9.989869 GTTATTTAGAGTTTAGACCAAGCATTC 57.010 33.333 0.00 0.00 0.00 2.67
3520 4016 9.740710 AGTTATTTAGAGTTTAGACCAAGCATT 57.259 29.630 0.00 0.00 0.00 3.56
3521 4017 9.740710 AAGTTATTTAGAGTTTAGACCAAGCAT 57.259 29.630 0.00 0.00 0.00 3.79
3543 4039 9.717942 GTGGCATTAGATATTCTATCTGAAGTT 57.282 33.333 6.87 0.00 38.18 2.66
3545 4041 9.887629 ATGTGGCATTAGATATTCTATCTGAAG 57.112 33.333 6.87 0.00 38.18 3.02
3548 4044 9.242477 CGTATGTGGCATTAGATATTCTATCTG 57.758 37.037 6.87 0.00 0.00 2.90
3549 4045 8.972127 ACGTATGTGGCATTAGATATTCTATCT 58.028 33.333 0.00 2.50 0.00 1.98
3553 4049 9.944376 ATTTACGTATGTGGCATTAGATATTCT 57.056 29.630 0.00 0.00 0.00 2.40
3563 4059 9.944663 CAAGTTATTTATTTACGTATGTGGCAT 57.055 29.630 0.00 0.00 0.00 4.40
3585 4121 6.351881 CCCCACAATCTGTATACTACACAAGT 60.352 42.308 4.17 0.00 42.62 3.16
3612 4148 8.144478 GGTTTTTCTAATTTTCTTCAAGAGGCT 58.856 33.333 0.00 0.00 0.00 4.58
3620 4156 6.415573 TGTTCGCGGTTTTTCTAATTTTCTTC 59.584 34.615 6.13 0.00 0.00 2.87
3628 4164 2.290916 TGCATGTTCGCGGTTTTTCTAA 59.709 40.909 6.13 0.00 33.35 2.10
3629 4165 1.874231 TGCATGTTCGCGGTTTTTCTA 59.126 42.857 6.13 0.00 33.35 2.10
3630 4166 0.665835 TGCATGTTCGCGGTTTTTCT 59.334 45.000 6.13 0.00 33.35 2.52
3631 4167 1.696988 ATGCATGTTCGCGGTTTTTC 58.303 45.000 6.13 0.00 33.35 2.29
3633 4169 2.080693 TCTATGCATGTTCGCGGTTTT 58.919 42.857 10.16 0.00 33.35 2.43
3635 4171 1.953559 ATCTATGCATGTTCGCGGTT 58.046 45.000 10.16 0.00 33.35 4.44
3636 4172 1.599071 CAATCTATGCATGTTCGCGGT 59.401 47.619 10.16 0.00 33.35 5.68
3637 4173 1.599071 ACAATCTATGCATGTTCGCGG 59.401 47.619 10.16 0.00 33.35 6.46
3646 4182 5.180680 GCTGCATCATTCTACAATCTATGCA 59.819 40.000 0.00 0.00 41.69 3.96
3647 4183 5.180680 TGCTGCATCATTCTACAATCTATGC 59.819 40.000 0.00 0.00 38.16 3.14
3648 4184 6.427242 ACTGCTGCATCATTCTACAATCTATG 59.573 38.462 1.31 0.00 0.00 2.23
3665 4201 5.278463 GGATTCTTCTGTAAAAACTGCTGCA 60.278 40.000 0.88 0.88 0.00 4.41
3666 4202 5.157067 GGATTCTTCTGTAAAAACTGCTGC 58.843 41.667 0.00 0.00 0.00 5.25
3673 4209 3.504520 GCCCACGGATTCTTCTGTAAAAA 59.495 43.478 0.00 0.00 39.53 1.94
3678 4214 0.036010 CTGCCCACGGATTCTTCTGT 60.036 55.000 0.00 0.00 42.37 3.41
3688 4225 1.668419 CCTAGAAATTCTGCCCACGG 58.332 55.000 5.64 0.00 0.00 4.94
3690 4227 1.564348 TCCCCTAGAAATTCTGCCCAC 59.436 52.381 5.64 0.00 0.00 4.61
3692 4229 1.564348 TGTCCCCTAGAAATTCTGCCC 59.436 52.381 5.64 0.00 0.00 5.36
3699 4236 8.860088 GCATACATAAAATTGTCCCCTAGAAAT 58.140 33.333 0.00 0.00 0.00 2.17
3700 4237 8.058847 AGCATACATAAAATTGTCCCCTAGAAA 58.941 33.333 0.00 0.00 0.00 2.52
3701 4238 7.502226 CAGCATACATAAAATTGTCCCCTAGAA 59.498 37.037 0.00 0.00 0.00 2.10
3702 4239 6.998074 CAGCATACATAAAATTGTCCCCTAGA 59.002 38.462 0.00 0.00 0.00 2.43
3703 4240 6.772716 ACAGCATACATAAAATTGTCCCCTAG 59.227 38.462 0.00 0.00 0.00 3.02
3704 4241 6.668645 ACAGCATACATAAAATTGTCCCCTA 58.331 36.000 0.00 0.00 0.00 3.53
3705 4242 5.518865 ACAGCATACATAAAATTGTCCCCT 58.481 37.500 0.00 0.00 0.00 4.79
3706 4243 5.359576 TGACAGCATACATAAAATTGTCCCC 59.640 40.000 0.00 0.00 34.18 4.81
3707 4244 6.449635 TGACAGCATACATAAAATTGTCCC 57.550 37.500 0.00 0.00 34.18 4.46
3708 4245 6.318648 TCCTGACAGCATACATAAAATTGTCC 59.681 38.462 0.00 0.00 34.18 4.02
3709 4246 7.320443 TCCTGACAGCATACATAAAATTGTC 57.680 36.000 0.00 0.00 35.31 3.18
3710 4247 7.701539 TTCCTGACAGCATACATAAAATTGT 57.298 32.000 0.00 0.00 0.00 2.71
3711 4248 8.984891 TTTTCCTGACAGCATACATAAAATTG 57.015 30.769 0.00 0.00 0.00 2.32
3718 4255 9.851686 TTCTTATATTTTCCTGACAGCATACAT 57.148 29.630 0.00 0.00 0.00 2.29
3719 4256 9.851686 ATTCTTATATTTTCCTGACAGCATACA 57.148 29.630 0.00 0.00 0.00 2.29
3721 4258 9.851686 ACATTCTTATATTTTCCTGACAGCATA 57.148 29.630 0.00 0.00 0.00 3.14
3722 4259 8.627403 CACATTCTTATATTTTCCTGACAGCAT 58.373 33.333 0.00 0.00 0.00 3.79
3723 4260 7.828717 TCACATTCTTATATTTTCCTGACAGCA 59.171 33.333 0.00 0.00 0.00 4.41
3724 4261 8.125448 GTCACATTCTTATATTTTCCTGACAGC 58.875 37.037 0.00 0.00 0.00 4.40
3725 4262 9.166173 TGTCACATTCTTATATTTTCCTGACAG 57.834 33.333 0.00 0.00 32.58 3.51
3726 4263 9.166173 CTGTCACATTCTTATATTTTCCTGACA 57.834 33.333 0.00 0.00 34.60 3.58
3727 4264 9.167311 ACTGTCACATTCTTATATTTTCCTGAC 57.833 33.333 0.00 0.00 0.00 3.51
3738 4275 9.823647 CCAGAAATACTACTGTCACATTCTTAT 57.176 33.333 0.00 0.00 32.93 1.73
3739 4276 8.258007 CCCAGAAATACTACTGTCACATTCTTA 58.742 37.037 0.00 0.00 32.93 2.10
3740 4277 7.106239 CCCAGAAATACTACTGTCACATTCTT 58.894 38.462 0.00 0.00 32.93 2.52
3741 4278 6.213600 ACCCAGAAATACTACTGTCACATTCT 59.786 38.462 0.00 0.00 32.93 2.40
3742 4279 6.407202 ACCCAGAAATACTACTGTCACATTC 58.593 40.000 0.00 0.00 32.93 2.67
3743 4280 6.374417 ACCCAGAAATACTACTGTCACATT 57.626 37.500 0.00 0.00 32.93 2.71
3744 4281 6.668283 AGTACCCAGAAATACTACTGTCACAT 59.332 38.462 0.00 0.00 29.70 3.21
3745 4282 6.014647 AGTACCCAGAAATACTACTGTCACA 58.985 40.000 0.00 0.00 29.70 3.58
3746 4283 6.527057 AGTACCCAGAAATACTACTGTCAC 57.473 41.667 0.00 0.00 29.70 3.67
3747 4284 6.495872 ACAAGTACCCAGAAATACTACTGTCA 59.504 38.462 0.00 0.00 31.30 3.58
3748 4285 6.932947 ACAAGTACCCAGAAATACTACTGTC 58.067 40.000 0.00 0.00 31.30 3.51
3749 4286 6.930068 ACAAGTACCCAGAAATACTACTGT 57.070 37.500 0.00 0.00 31.30 3.55
3750 4287 8.308931 TGTAACAAGTACCCAGAAATACTACTG 58.691 37.037 0.00 0.00 31.30 2.74
3751 4288 8.426569 TGTAACAAGTACCCAGAAATACTACT 57.573 34.615 0.00 0.00 31.30 2.57
3752 4289 7.277319 GCTGTAACAAGTACCCAGAAATACTAC 59.723 40.741 0.00 0.00 31.30 2.73
3753 4290 7.038870 TGCTGTAACAAGTACCCAGAAATACTA 60.039 37.037 0.00 0.00 31.30 1.82
3756 4293 6.116711 TGCTGTAACAAGTACCCAGAAATA 57.883 37.500 0.00 0.00 30.94 1.40
3764 4301 7.414098 CCACAAGATATTGCTGTAACAAGTACC 60.414 40.741 0.00 0.00 31.96 3.34
3797 4338 4.163268 TGCTGTTAGTGCAGGGATGTATAA 59.837 41.667 0.00 0.00 37.00 0.98
3803 4372 2.814805 ATTGCTGTTAGTGCAGGGAT 57.185 45.000 0.00 0.00 41.71 3.85
3844 4416 2.108075 TGCCCCTGTGAAGAAGAAATGA 59.892 45.455 0.00 0.00 0.00 2.57
3852 4424 1.839994 CTATCCTTGCCCCTGTGAAGA 59.160 52.381 0.00 0.00 0.00 2.87
3879 4451 7.440556 CACATGATGTTTATTTGTTTCCCAACA 59.559 33.333 0.00 0.00 41.39 3.33
3880 4452 7.095271 CCACATGATGTTTATTTGTTTCCCAAC 60.095 37.037 0.00 0.00 31.20 3.77
3882 4454 6.268617 TCCACATGATGTTTATTTGTTTCCCA 59.731 34.615 0.00 0.00 0.00 4.37
3937 4509 2.504175 GGACCTATAAGAACCAGCCACA 59.496 50.000 0.00 0.00 0.00 4.17
3938 4510 2.772515 AGGACCTATAAGAACCAGCCAC 59.227 50.000 0.00 0.00 0.00 5.01
3939 4511 3.130734 AGGACCTATAAGAACCAGCCA 57.869 47.619 0.00 0.00 0.00 4.75
3940 4512 3.712218 AGAAGGACCTATAAGAACCAGCC 59.288 47.826 0.00 0.00 0.00 4.85
3941 4513 4.651962 AGAGAAGGACCTATAAGAACCAGC 59.348 45.833 0.00 0.00 0.00 4.85
3942 4514 5.894393 TCAGAGAAGGACCTATAAGAACCAG 59.106 44.000 0.00 0.00 0.00 4.00
3943 4515 5.838955 TCAGAGAAGGACCTATAAGAACCA 58.161 41.667 0.00 0.00 0.00 3.67
3944 4516 6.014925 GGATCAGAGAAGGACCTATAAGAACC 60.015 46.154 0.00 0.00 0.00 3.62
3945 4517 6.780522 AGGATCAGAGAAGGACCTATAAGAAC 59.219 42.308 0.00 0.00 0.00 3.01
3946 4518 6.928202 AGGATCAGAGAAGGACCTATAAGAA 58.072 40.000 0.00 0.00 0.00 2.52
3947 4519 6.538209 AGGATCAGAGAAGGACCTATAAGA 57.462 41.667 0.00 0.00 0.00 2.10
3948 4520 6.780031 TGAAGGATCAGAGAAGGACCTATAAG 59.220 42.308 0.00 0.00 0.00 1.73
3949 4521 6.551601 GTGAAGGATCAGAGAAGGACCTATAA 59.448 42.308 0.00 0.00 35.88 0.98
3950 4522 6.071984 GTGAAGGATCAGAGAAGGACCTATA 58.928 44.000 0.00 0.00 35.88 1.31
3951 4523 4.898861 GTGAAGGATCAGAGAAGGACCTAT 59.101 45.833 0.00 0.00 35.88 2.57
3952 4524 4.017037 AGTGAAGGATCAGAGAAGGACCTA 60.017 45.833 0.00 0.00 35.88 3.08
3953 4525 3.103742 GTGAAGGATCAGAGAAGGACCT 58.896 50.000 0.00 0.00 35.88 3.85
3954 4526 3.103742 AGTGAAGGATCAGAGAAGGACC 58.896 50.000 0.00 0.00 35.88 4.46
3955 4527 3.181491 CGAGTGAAGGATCAGAGAAGGAC 60.181 52.174 0.00 0.00 35.88 3.85
3956 4528 3.020274 CGAGTGAAGGATCAGAGAAGGA 58.980 50.000 0.00 0.00 35.88 3.36
3964 4536 3.588955 CAACATCACGAGTGAAGGATCA 58.411 45.455 10.15 0.00 43.58 2.92
3982 4554 2.645730 TGCAATCAATTACCGGCAAC 57.354 45.000 0.00 0.00 0.00 4.17
3986 4558 2.230025 TGTGGTTGCAATCAATTACCGG 59.770 45.455 15.37 0.00 34.29 5.28
4002 4574 9.445419 GTCTACGAAGAATAGTCACCATGTGGT 62.445 44.444 0.00 0.00 40.74 4.16
4013 4585 6.436532 TCCCAGAAAAGTCTACGAAGAATAGT 59.563 38.462 0.00 0.00 32.16 2.12
4014 4586 6.864342 TCCCAGAAAAGTCTACGAAGAATAG 58.136 40.000 0.00 0.00 32.16 1.73
4018 4590 8.707796 ATATATCCCAGAAAAGTCTACGAAGA 57.292 34.615 0.00 0.00 30.85 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.