Multiple sequence alignment - TraesCS5B01G570800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G570800 chr5B 100.000 2849 0 0 1 2849 712396206 712399054 0.000000e+00 5262.0
1 TraesCS5B01G570800 chr5B 96.540 578 20 0 2003 2580 411944215 411944792 0.000000e+00 957.0
2 TraesCS5B01G570800 chr5B 96.367 578 21 0 2003 2580 513959524 513958947 0.000000e+00 952.0
3 TraesCS5B01G570800 chr5B 96.367 578 21 0 2003 2580 546960869 546961446 0.000000e+00 952.0
4 TraesCS5B01G570800 chr5B 85.176 769 102 10 1030 1792 711268877 711268115 0.000000e+00 778.0
5 TraesCS5B01G570800 chr5B 95.492 244 9 1 2606 2849 576908212 576908453 3.440000e-104 388.0
6 TraesCS5B01G570800 chr5B 95.082 244 12 0 2606 2849 584262469 584262226 4.450000e-103 385.0
7 TraesCS5B01G570800 chr5B 94.779 249 8 4 2606 2849 26490546 26490298 1.600000e-102 383.0
8 TraesCS5B01G570800 chr5B 94.758 248 8 3 2607 2849 513953117 513952870 5.760000e-102 381.0
9 TraesCS5B01G570800 chr7B 89.801 1255 77 23 772 2006 783012 781789 0.000000e+00 1561.0
10 TraesCS5B01G570800 chr7B 97.582 579 14 0 2002 2580 741354520 741355098 0.000000e+00 992.0
11 TraesCS5B01G570800 chr7B 97.405 578 15 0 2003 2580 741359838 741360415 0.000000e+00 985.0
12 TraesCS5B01G570800 chr7B 85.897 780 100 8 1018 1792 1437074 1437848 0.000000e+00 822.0
13 TraesCS5B01G570800 chr7B 84.419 783 106 13 1018 1792 1482341 1483115 0.000000e+00 756.0
14 TraesCS5B01G570800 chr5D 92.360 1021 53 10 997 2003 562029009 562030018 0.000000e+00 1430.0
15 TraesCS5B01G570800 chr5D 84.655 769 106 10 1030 1792 561573001 561572239 0.000000e+00 756.0
16 TraesCS5B01G570800 chr5D 79.592 588 56 16 2 569 562027997 562028540 2.090000e-96 363.0
17 TraesCS5B01G570800 chr5D 83.824 136 22 0 1587 1722 287570998 287570863 2.300000e-26 130.0
18 TraesCS5B01G570800 chr5D 97.143 35 1 0 538 572 455827119 455827153 3.070000e-05 60.2
19 TraesCS5B01G570800 chr4A 97.405 578 15 0 2003 2580 672260696 672261273 0.000000e+00 985.0
20 TraesCS5B01G570800 chr4A 96.902 581 18 0 2000 2580 672248524 672249104 0.000000e+00 974.0
21 TraesCS5B01G570800 chr4A 96.367 578 21 0 2003 2580 720360972 720361549 0.000000e+00 952.0
22 TraesCS5B01G570800 chr4A 78.906 128 26 1 445 572 659222067 659221941 5.060000e-13 86.1
23 TraesCS5B01G570800 chr4B 96.348 575 21 0 2003 2577 54353758 54354332 0.000000e+00 946.0
24 TraesCS5B01G570800 chr4B 76.033 121 24 4 454 571 419994773 419994655 1.100000e-04 58.4
25 TraesCS5B01G570800 chr4D 84.379 781 110 8 1033 1807 504597468 504598242 0.000000e+00 756.0
26 TraesCS5B01G570800 chr6B 84.082 779 108 15 1032 1802 96655208 96654438 0.000000e+00 737.0
27 TraesCS5B01G570800 chr6B 95.902 244 10 0 2606 2849 17760921 17761164 2.060000e-106 396.0
28 TraesCS5B01G570800 chr6B 95.492 244 11 0 2606 2849 664672584 664672827 9.570000e-105 390.0
29 TraesCS5B01G570800 chr6B 94.355 248 7 3 2607 2849 22062083 22061838 9.640000e-100 374.0
30 TraesCS5B01G570800 chr5A 83.462 780 119 6 1033 1807 689251934 689252708 0.000000e+00 717.0
31 TraesCS5B01G570800 chr2D 81.545 699 115 13 1030 1722 27483445 27482755 5.330000e-157 564.0
32 TraesCS5B01G570800 chr2D 85.816 141 20 0 1583 1723 159575983 159576123 1.770000e-32 150.0
33 TraesCS5B01G570800 chr2D 85.000 140 21 0 1583 1722 480180547 480180408 2.960000e-30 143.0
34 TraesCS5B01G570800 chr2A 81.349 697 120 10 1030 1722 29721480 29720790 2.480000e-155 558.0
35 TraesCS5B01G570800 chr2A 85.816 141 20 0 1583 1723 170604809 170604949 1.770000e-32 150.0
36 TraesCS5B01G570800 chr1B 95.902 244 10 0 2606 2849 4124922 4124679 2.060000e-106 396.0
37 TraesCS5B01G570800 chrUn 94.650 243 13 0 2607 2849 76531526 76531284 7.450000e-101 377.0
38 TraesCS5B01G570800 chrUn 88.421 95 11 0 1586 1680 151561813 151561907 6.450000e-22 115.0
39 TraesCS5B01G570800 chrUn 88.764 89 10 0 1586 1674 146623868 146623956 3.000000e-20 110.0
40 TraesCS5B01G570800 chrUn 88.764 89 10 0 1592 1680 170965313 170965225 3.000000e-20 110.0
41 TraesCS5B01G570800 chr6A 82.143 140 25 0 1583 1722 414876524 414876385 1.390000e-23 121.0
42 TraesCS5B01G570800 chr3A 84.252 127 16 4 445 570 688609830 688609953 1.390000e-23 121.0
43 TraesCS5B01G570800 chr3A 80.870 115 18 3 460 572 159351079 159350967 1.410000e-13 87.9
44 TraesCS5B01G570800 chr3A 78.125 128 28 0 445 572 572347757 572347630 6.540000e-12 82.4
45 TraesCS5B01G570800 chr3A 77.857 140 23 8 435 571 696284677 696284543 2.350000e-11 80.5
46 TraesCS5B01G570800 chr7D 84.746 118 18 0 455 572 623508685 623508568 4.990000e-23 119.0
47 TraesCS5B01G570800 chr7D 81.982 111 17 2 463 572 607124380 607124272 1.090000e-14 91.6
48 TraesCS5B01G570800 chr7D 92.308 39 3 0 534 572 29717686 29717648 3.970000e-04 56.5
49 TraesCS5B01G570800 chr6D 81.429 140 26 0 1583 1722 302039306 302039445 6.450000e-22 115.0
50 TraesCS5B01G570800 chr6D 89.796 49 5 0 523 571 362219725 362219677 2.370000e-06 63.9
51 TraesCS5B01G570800 chr6D 88.462 52 5 1 520 571 454737389 454737339 8.520000e-06 62.1
52 TraesCS5B01G570800 chr1A 89.655 87 9 0 1592 1678 199209441 199209355 8.340000e-21 111.0
53 TraesCS5B01G570800 chr1A 79.070 129 25 2 445 572 586623630 586623757 1.410000e-13 87.9
54 TraesCS5B01G570800 chr3B 81.148 122 23 0 446 567 459449079 459448958 6.500000e-17 99.0
55 TraesCS5B01G570800 chr3B 80.620 129 22 3 445 571 143523363 143523490 2.340000e-16 97.1
56 TraesCS5B01G570800 chr1D 79.365 126 26 0 447 572 119406849 119406724 3.910000e-14 89.8
57 TraesCS5B01G570800 chr3D 100.000 29 0 0 543 571 316468134 316468106 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G570800 chr5B 712396206 712399054 2848 False 5262.0 5262 100.000 1 2849 1 chr5B.!!$F4 2848
1 TraesCS5B01G570800 chr5B 411944215 411944792 577 False 957.0 957 96.540 2003 2580 1 chr5B.!!$F1 577
2 TraesCS5B01G570800 chr5B 513958947 513959524 577 True 952.0 952 96.367 2003 2580 1 chr5B.!!$R3 577
3 TraesCS5B01G570800 chr5B 546960869 546961446 577 False 952.0 952 96.367 2003 2580 1 chr5B.!!$F2 577
4 TraesCS5B01G570800 chr5B 711268115 711268877 762 True 778.0 778 85.176 1030 1792 1 chr5B.!!$R5 762
5 TraesCS5B01G570800 chr7B 781789 783012 1223 True 1561.0 1561 89.801 772 2006 1 chr7B.!!$R1 1234
6 TraesCS5B01G570800 chr7B 741354520 741355098 578 False 992.0 992 97.582 2002 2580 1 chr7B.!!$F3 578
7 TraesCS5B01G570800 chr7B 741359838 741360415 577 False 985.0 985 97.405 2003 2580 1 chr7B.!!$F4 577
8 TraesCS5B01G570800 chr7B 1437074 1437848 774 False 822.0 822 85.897 1018 1792 1 chr7B.!!$F1 774
9 TraesCS5B01G570800 chr7B 1482341 1483115 774 False 756.0 756 84.419 1018 1792 1 chr7B.!!$F2 774
10 TraesCS5B01G570800 chr5D 562027997 562030018 2021 False 896.5 1430 85.976 2 2003 2 chr5D.!!$F2 2001
11 TraesCS5B01G570800 chr5D 561572239 561573001 762 True 756.0 756 84.655 1030 1792 1 chr5D.!!$R2 762
12 TraesCS5B01G570800 chr4A 672260696 672261273 577 False 985.0 985 97.405 2003 2580 1 chr4A.!!$F2 577
13 TraesCS5B01G570800 chr4A 672248524 672249104 580 False 974.0 974 96.902 2000 2580 1 chr4A.!!$F1 580
14 TraesCS5B01G570800 chr4A 720360972 720361549 577 False 952.0 952 96.367 2003 2580 1 chr4A.!!$F3 577
15 TraesCS5B01G570800 chr4B 54353758 54354332 574 False 946.0 946 96.348 2003 2577 1 chr4B.!!$F1 574
16 TraesCS5B01G570800 chr4D 504597468 504598242 774 False 756.0 756 84.379 1033 1807 1 chr4D.!!$F1 774
17 TraesCS5B01G570800 chr6B 96654438 96655208 770 True 737.0 737 84.082 1032 1802 1 chr6B.!!$R2 770
18 TraesCS5B01G570800 chr5A 689251934 689252708 774 False 717.0 717 83.462 1033 1807 1 chr5A.!!$F1 774
19 TraesCS5B01G570800 chr2D 27482755 27483445 690 True 564.0 564 81.545 1030 1722 1 chr2D.!!$R1 692
20 TraesCS5B01G570800 chr2A 29720790 29721480 690 True 558.0 558 81.349 1030 1722 1 chr2A.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 917 0.032403 TACACCGACGAAACCCACAG 59.968 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2777 2922 0.320946 CCATTTGTGCAAGGCAAGGG 60.321 55.0 0.0 0.0 41.47 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.977789 TGTGCTTGTCAGATTAATTGAGTTA 57.022 32.000 0.00 0.00 0.00 2.24
30 31 8.454106 GTGCTTGTCAGATTAATTGAGTTATGT 58.546 33.333 0.00 0.00 0.00 2.29
32 33 9.282247 GCTTGTCAGATTAATTGAGTTATGTTG 57.718 33.333 0.00 0.00 0.00 3.33
71 72 7.423844 TCTAAAGTGGAAAGATGATAGCAGA 57.576 36.000 0.00 0.00 0.00 4.26
121 128 8.036575 ACATTATATGCAATATGTTGGGCAATC 58.963 33.333 4.23 0.00 40.40 2.67
126 133 4.293216 GCAATATGTTGGGCAATCCTTGC 61.293 47.826 4.23 3.27 44.40 4.01
127 134 6.486658 GCAATATGTTGGGCAATCCTTGCT 62.487 45.833 11.26 0.00 44.47 3.91
128 135 7.877155 GCAATATGTTGGGCAATCCTTGCTT 62.877 44.000 11.26 0.00 44.47 3.91
138 145 4.178545 CAATCCTTGCTTACCAAACCAG 57.821 45.455 0.00 0.00 31.94 4.00
139 146 3.525800 ATCCTTGCTTACCAAACCAGT 57.474 42.857 0.00 0.00 31.94 4.00
145 152 2.685897 TGCTTACCAAACCAGTGTGTTC 59.314 45.455 0.00 0.00 0.00 3.18
157 164 3.820467 CCAGTGTGTTCAAGCCTCATTTA 59.180 43.478 0.00 0.00 0.00 1.40
160 167 2.819608 TGTGTTCAAGCCTCATTTAGCC 59.180 45.455 0.00 0.00 0.00 3.93
170 177 0.546122 TCATTTAGCCATGAGCCCGT 59.454 50.000 0.00 0.00 45.47 5.28
171 178 1.064758 TCATTTAGCCATGAGCCCGTT 60.065 47.619 0.00 0.00 45.47 4.44
172 179 2.171659 TCATTTAGCCATGAGCCCGTTA 59.828 45.455 0.00 0.00 45.47 3.18
173 180 3.149196 CATTTAGCCATGAGCCCGTTAT 58.851 45.455 0.00 0.00 45.47 1.89
174 181 4.041075 TCATTTAGCCATGAGCCCGTTATA 59.959 41.667 0.00 0.00 45.47 0.98
176 183 2.479566 AGCCATGAGCCCGTTATATG 57.520 50.000 0.00 0.00 45.47 1.78
199 210 0.106419 GTCCTGTCCAAACCCAACCA 60.106 55.000 0.00 0.00 0.00 3.67
215 226 3.313526 CCAACCATAGAGTAAGCACATGC 59.686 47.826 0.00 0.00 42.49 4.06
251 272 7.624360 TTGTCCTAAAACATTGTATAGCCAG 57.376 36.000 0.00 0.00 0.00 4.85
252 273 6.119536 TGTCCTAAAACATTGTATAGCCAGG 58.880 40.000 0.00 0.00 0.00 4.45
253 274 6.120220 GTCCTAAAACATTGTATAGCCAGGT 58.880 40.000 0.00 0.00 0.00 4.00
254 275 7.092802 TGTCCTAAAACATTGTATAGCCAGGTA 60.093 37.037 0.00 0.00 0.00 3.08
255 276 7.441458 GTCCTAAAACATTGTATAGCCAGGTAG 59.559 40.741 0.00 0.00 0.00 3.18
256 277 7.346175 TCCTAAAACATTGTATAGCCAGGTAGA 59.654 37.037 0.00 0.00 0.00 2.59
257 278 7.990886 CCTAAAACATTGTATAGCCAGGTAGAA 59.009 37.037 0.00 0.00 0.00 2.10
258 279 9.561069 CTAAAACATTGTATAGCCAGGTAGAAT 57.439 33.333 0.00 0.00 0.00 2.40
259 280 8.451908 AAAACATTGTATAGCCAGGTAGAATC 57.548 34.615 0.00 0.00 0.00 2.52
260 281 6.747414 ACATTGTATAGCCAGGTAGAATCA 57.253 37.500 0.00 0.00 0.00 2.57
261 282 6.525629 ACATTGTATAGCCAGGTAGAATCAC 58.474 40.000 0.00 0.00 0.00 3.06
262 283 4.848562 TGTATAGCCAGGTAGAATCACG 57.151 45.455 0.00 0.00 0.00 4.35
263 284 4.212716 TGTATAGCCAGGTAGAATCACGT 58.787 43.478 0.00 0.00 0.00 4.49
264 285 4.277672 TGTATAGCCAGGTAGAATCACGTC 59.722 45.833 0.00 0.00 0.00 4.34
265 286 0.456221 AGCCAGGTAGAATCACGTCG 59.544 55.000 0.00 0.00 0.00 5.12
266 287 0.527817 GCCAGGTAGAATCACGTCGG 60.528 60.000 0.00 0.00 0.00 4.79
267 288 0.815734 CCAGGTAGAATCACGTCGGT 59.184 55.000 0.00 0.00 0.00 4.69
268 289 1.203994 CCAGGTAGAATCACGTCGGTT 59.796 52.381 0.00 0.00 0.00 4.44
269 290 2.353406 CCAGGTAGAATCACGTCGGTTT 60.353 50.000 0.00 0.00 0.00 3.27
270 291 2.666508 CAGGTAGAATCACGTCGGTTTG 59.333 50.000 0.00 0.00 0.00 2.93
271 292 1.997606 GGTAGAATCACGTCGGTTTGG 59.002 52.381 0.00 0.00 0.00 3.28
272 293 1.392510 GTAGAATCACGTCGGTTTGGC 59.607 52.381 0.00 0.00 0.00 4.52
277 298 0.878523 TCACGTCGGTTTGGCTCTTG 60.879 55.000 0.00 0.00 0.00 3.02
287 308 3.447742 GTTTGGCTCTTGTTGGTTCTTG 58.552 45.455 0.00 0.00 0.00 3.02
291 312 2.297701 GCTCTTGTTGGTTCTTGGTGA 58.702 47.619 0.00 0.00 0.00 4.02
325 346 9.388346 CTTCTTCTACGATTGATAGATACACAC 57.612 37.037 0.00 0.00 0.00 3.82
326 347 8.446599 TCTTCTACGATTGATAGATACACACA 57.553 34.615 0.00 0.00 0.00 3.72
327 348 8.343366 TCTTCTACGATTGATAGATACACACAC 58.657 37.037 0.00 0.00 0.00 3.82
329 350 7.415229 TCTACGATTGATAGATACACACACAC 58.585 38.462 0.00 0.00 0.00 3.82
330 351 5.961272 ACGATTGATAGATACACACACACA 58.039 37.500 0.00 0.00 0.00 3.72
331 352 5.805486 ACGATTGATAGATACACACACACAC 59.195 40.000 0.00 0.00 0.00 3.82
332 353 5.804979 CGATTGATAGATACACACACACACA 59.195 40.000 0.00 0.00 0.00 3.72
333 354 6.237569 CGATTGATAGATACACACACACACAC 60.238 42.308 0.00 0.00 0.00 3.82
334 355 5.461032 TGATAGATACACACACACACACA 57.539 39.130 0.00 0.00 0.00 3.72
335 356 6.036577 TGATAGATACACACACACACACAT 57.963 37.500 0.00 0.00 0.00 3.21
336 357 7.164230 TGATAGATACACACACACACACATA 57.836 36.000 0.00 0.00 0.00 2.29
337 358 7.781056 TGATAGATACACACACACACACATAT 58.219 34.615 0.00 0.00 0.00 1.78
338 359 8.908903 TGATAGATACACACACACACACATATA 58.091 33.333 0.00 0.00 0.00 0.86
339 360 9.914131 GATAGATACACACACACACACATATAT 57.086 33.333 0.00 0.00 0.00 0.86
370 391 7.050970 AGGAGACTAAACCCAACAAATTTTC 57.949 36.000 0.00 0.00 40.61 2.29
400 421 4.261578 TGTCGGTTTGTCCCTAAACTAG 57.738 45.455 0.00 0.00 39.78 2.57
401 422 2.998670 GTCGGTTTGTCCCTAAACTAGC 59.001 50.000 0.00 0.00 39.78 3.42
402 423 2.027837 TCGGTTTGTCCCTAAACTAGCC 60.028 50.000 0.00 0.00 39.78 3.93
403 424 2.289819 CGGTTTGTCCCTAAACTAGCCA 60.290 50.000 0.00 0.00 39.78 4.75
413 434 6.016777 GTCCCTAAACTAGCCATGATCATTTG 60.017 42.308 5.16 1.34 0.00 2.32
422 443 9.632638 ACTAGCCATGATCATTTGTTAAACTAT 57.367 29.630 5.16 0.00 0.00 2.12
432 453 9.722056 ATCATTTGTTAAACTATGATCGAAAGC 57.278 29.630 0.00 0.00 33.63 3.51
442 463 0.371645 GATCGAAAGCTCTTGGCACG 59.628 55.000 0.00 0.00 44.79 5.34
458 479 1.476074 CACGTGTGCTCGCAATTTTT 58.524 45.000 7.58 0.00 0.00 1.94
480 501 5.828299 TTGGATTTATTTCAGGCCTAACG 57.172 39.130 3.98 0.00 0.00 3.18
499 520 4.874977 TGACGTGCGTTGCGTGGA 62.875 61.111 0.00 0.00 43.04 4.02
502 523 4.368808 CGTGCGTTGCGTGGAAGG 62.369 66.667 0.00 0.00 0.00 3.46
507 528 2.372690 CGTTGCGTGGAAGGAGACG 61.373 63.158 0.00 0.00 38.63 4.18
510 531 0.179067 TTGCGTGGAAGGAGACGTTT 60.179 50.000 0.00 0.00 37.89 3.60
512 533 0.599204 GCGTGGAAGGAGACGTTTCA 60.599 55.000 8.50 0.00 37.89 2.69
513 534 1.860676 CGTGGAAGGAGACGTTTCAA 58.139 50.000 8.50 0.00 0.00 2.69
516 537 3.399330 GTGGAAGGAGACGTTTCAATCA 58.601 45.455 8.50 0.00 0.00 2.57
518 539 4.065088 TGGAAGGAGACGTTTCAATCAAG 58.935 43.478 8.50 0.00 0.00 3.02
521 542 5.875359 GGAAGGAGACGTTTCAATCAAGTAT 59.125 40.000 8.50 0.00 0.00 2.12
526 547 6.590292 GGAGACGTTTCAATCAAGTATGAAGA 59.410 38.462 8.50 0.00 39.49 2.87
528 549 6.089551 AGACGTTTCAATCAAGTATGAAGACG 59.910 38.462 15.04 15.04 40.96 4.18
530 551 6.009474 CGTTTCAATCAAGTATGAAGACGTG 58.991 40.000 0.00 0.00 39.49 4.49
535 556 3.649073 TCAAGTATGAAGACGTGTGTGG 58.351 45.455 0.00 0.00 30.99 4.17
542 563 2.277084 GAAGACGTGTGTGGTGACTTT 58.723 47.619 0.00 0.00 0.00 2.66
543 564 1.651987 AGACGTGTGTGGTGACTTTG 58.348 50.000 0.00 0.00 0.00 2.77
554 575 4.946772 TGTGGTGACTTTGTCAATCTCAAA 59.053 37.500 1.73 0.00 44.49 2.69
569 590 0.810648 TCAAAATGATGTGCCGGCTC 59.189 50.000 29.70 25.38 0.00 4.70
572 593 1.660560 AAATGATGTGCCGGCTCAGC 61.661 55.000 33.35 33.35 0.00 4.26
573 594 2.825075 AATGATGTGCCGGCTCAGCA 62.825 55.000 40.71 40.71 39.54 4.41
588 615 4.357279 GCAAGCTGCTCCTGGGGT 62.357 66.667 1.00 0.00 40.96 4.95
589 616 2.360852 CAAGCTGCTCCTGGGGTG 60.361 66.667 1.00 0.00 0.00 4.61
590 617 4.357279 AAGCTGCTCCTGGGGTGC 62.357 66.667 1.00 5.72 41.88 5.01
593 620 3.957586 CTGCTCCTGGGGTGCACA 61.958 66.667 20.43 0.00 45.45 4.57
594 621 4.269523 TGCTCCTGGGGTGCACAC 62.270 66.667 20.43 16.45 45.45 3.82
595 622 4.269523 GCTCCTGGGGTGCACACA 62.270 66.667 22.94 16.79 41.27 3.72
597 624 1.377725 CTCCTGGGGTGCACACATC 60.378 63.158 22.94 4.71 0.00 3.06
598 625 1.845627 CTCCTGGGGTGCACACATCT 61.846 60.000 22.94 0.00 0.00 2.90
599 626 0.546507 TCCTGGGGTGCACACATCTA 60.547 55.000 22.94 2.81 0.00 1.98
601 628 1.768275 CCTGGGGTGCACACATCTATA 59.232 52.381 22.94 0.00 0.00 1.31
602 629 2.172505 CCTGGGGTGCACACATCTATAA 59.827 50.000 22.94 0.00 0.00 0.98
603 630 3.371487 CCTGGGGTGCACACATCTATAAA 60.371 47.826 22.94 0.00 0.00 1.40
604 631 4.269183 CTGGGGTGCACACATCTATAAAA 58.731 43.478 22.94 0.00 0.00 1.52
605 632 4.667573 TGGGGTGCACACATCTATAAAAA 58.332 39.130 22.94 0.00 0.00 1.94
613 652 8.664798 GTGCACACATCTATAAAAATGAGTGTA 58.335 33.333 13.17 7.04 42.67 2.90
614 653 8.664798 TGCACACATCTATAAAAATGAGTGTAC 58.335 33.333 12.28 0.00 42.67 2.90
616 655 7.846107 CACACATCTATAAAAATGAGTGTACGC 59.154 37.037 0.00 0.00 38.70 4.42
619 658 5.103687 TCTATAAAAATGAGTGTACGCGCA 58.896 37.500 15.27 15.27 0.00 6.09
633 672 2.842939 CGCGCATATGTATGAGTGTG 57.157 50.000 8.75 0.00 38.58 3.82
637 676 4.299155 GCGCATATGTATGAGTGTGTACT 58.701 43.478 0.30 0.00 40.66 2.73
638 677 5.458015 GCGCATATGTATGAGTGTGTACTA 58.542 41.667 0.30 0.00 37.25 1.82
639 678 6.093404 GCGCATATGTATGAGTGTGTACTAT 58.907 40.000 0.30 0.00 37.25 2.12
640 679 6.033937 GCGCATATGTATGAGTGTGTACTATG 59.966 42.308 0.30 0.00 37.25 2.23
641 680 7.084486 CGCATATGTATGAGTGTGTACTATGT 58.916 38.462 4.29 0.00 37.25 2.29
689 735 9.331282 AGAAAATATAGCCTGTTAAACTAGCAG 57.669 33.333 0.00 0.00 36.85 4.24
695 741 2.960819 CTGTTAAACTAGCAGGCTCGT 58.039 47.619 0.00 0.00 33.92 4.18
700 746 0.457851 AACTAGCAGGCTCGTAGCAG 59.542 55.000 0.00 0.00 44.75 4.24
701 747 0.394488 ACTAGCAGGCTCGTAGCAGA 60.394 55.000 0.00 0.00 44.75 4.26
703 749 1.135139 CTAGCAGGCTCGTAGCAGAAA 59.865 52.381 0.00 0.00 44.75 2.52
704 750 0.539051 AGCAGGCTCGTAGCAGAAAT 59.461 50.000 8.71 0.00 44.75 2.17
706 752 1.293924 CAGGCTCGTAGCAGAAATGG 58.706 55.000 8.71 0.00 44.75 3.16
709 780 0.933796 GCTCGTAGCAGAAATGGAGC 59.066 55.000 2.53 0.00 41.89 4.70
728 799 1.673168 CTGCCTTAATCTGTGGCCTC 58.327 55.000 3.32 0.00 45.56 4.70
741 812 4.445699 GCCTCTGCCCGTAAGATG 57.554 61.111 0.00 0.00 43.02 2.90
745 816 0.390860 CTCTGCCCGTAAGATGGAGG 59.609 60.000 0.00 0.00 43.02 4.30
746 817 0.325296 TCTGCCCGTAAGATGGAGGT 60.325 55.000 0.00 0.00 43.02 3.85
747 818 1.063492 TCTGCCCGTAAGATGGAGGTA 60.063 52.381 0.00 0.00 43.02 3.08
749 820 2.169769 CTGCCCGTAAGATGGAGGTAAA 59.830 50.000 0.00 0.00 43.02 2.01
751 822 3.009253 TGCCCGTAAGATGGAGGTAAAAA 59.991 43.478 0.00 0.00 43.02 1.94
777 878 2.427506 GTTGGTCACTTGAGATGGGAC 58.572 52.381 0.00 0.00 0.00 4.46
785 886 2.039084 ACTTGAGATGGGACCAGTTCAC 59.961 50.000 6.97 0.00 0.00 3.18
791 896 2.922740 TGGGACCAGTTCACACTTAC 57.077 50.000 0.00 0.00 30.13 2.34
802 907 3.272439 TCACACTTACTTACACCGACG 57.728 47.619 0.00 0.00 0.00 5.12
812 917 0.032403 TACACCGACGAAACCCACAG 59.968 55.000 0.00 0.00 0.00 3.66
828 933 3.683937 AGGCCGCATGTGCAAACC 61.684 61.111 0.00 3.11 42.21 3.27
833 938 1.081242 CGCATGTGCAAACCACTCC 60.081 57.895 5.77 0.00 44.92 3.85
834 939 1.518056 CGCATGTGCAAACCACTCCT 61.518 55.000 5.77 0.00 44.92 3.69
835 940 0.675633 GCATGTGCAAACCACTCCTT 59.324 50.000 0.00 0.00 44.92 3.36
836 941 1.069049 GCATGTGCAAACCACTCCTTT 59.931 47.619 0.00 0.00 44.92 3.11
911 1023 2.350522 AGCTAAGCTTGTCAACATCGG 58.649 47.619 9.86 0.00 33.89 4.18
913 1025 2.159653 GCTAAGCTTGTCAACATCGGTG 60.160 50.000 9.86 0.00 0.00 4.94
918 1030 2.341257 CTTGTCAACATCGGTGGAGAG 58.659 52.381 0.00 0.00 0.00 3.20
972 1088 3.181455 CCATCTCCACCGTATCAATCCAA 60.181 47.826 0.00 0.00 0.00 3.53
973 1089 3.536956 TCTCCACCGTATCAATCCAAC 57.463 47.619 0.00 0.00 0.00 3.77
974 1090 2.835156 TCTCCACCGTATCAATCCAACA 59.165 45.455 0.00 0.00 0.00 3.33
975 1091 2.936498 CTCCACCGTATCAATCCAACAC 59.064 50.000 0.00 0.00 0.00 3.32
976 1092 2.014128 CCACCGTATCAATCCAACACC 58.986 52.381 0.00 0.00 0.00 4.16
977 1093 2.355716 CCACCGTATCAATCCAACACCT 60.356 50.000 0.00 0.00 0.00 4.00
978 1094 2.677836 CACCGTATCAATCCAACACCTG 59.322 50.000 0.00 0.00 0.00 4.00
979 1095 2.569853 ACCGTATCAATCCAACACCTGA 59.430 45.455 0.00 0.00 0.00 3.86
980 1096 3.199946 ACCGTATCAATCCAACACCTGAT 59.800 43.478 0.00 0.00 33.26 2.90
981 1097 3.809832 CCGTATCAATCCAACACCTGATC 59.190 47.826 0.00 0.00 31.20 2.92
982 1098 4.443457 CCGTATCAATCCAACACCTGATCT 60.443 45.833 0.00 0.00 31.20 2.75
983 1099 4.747108 CGTATCAATCCAACACCTGATCTC 59.253 45.833 0.00 0.00 31.20 2.75
984 1100 3.634397 TCAATCCAACACCTGATCTCC 57.366 47.619 0.00 0.00 0.00 3.71
985 1101 2.912295 TCAATCCAACACCTGATCTCCA 59.088 45.455 0.00 0.00 0.00 3.86
986 1102 3.524789 TCAATCCAACACCTGATCTCCAT 59.475 43.478 0.00 0.00 0.00 3.41
987 1103 3.853355 ATCCAACACCTGATCTCCATC 57.147 47.619 0.00 0.00 0.00 3.51
988 1104 2.837947 TCCAACACCTGATCTCCATCT 58.162 47.619 0.00 0.00 0.00 2.90
989 1105 2.768527 TCCAACACCTGATCTCCATCTC 59.231 50.000 0.00 0.00 0.00 2.75
990 1106 2.482664 CCAACACCTGATCTCCATCTCG 60.483 54.545 0.00 0.00 0.00 4.04
991 1107 2.428530 CAACACCTGATCTCCATCTCGA 59.571 50.000 0.00 0.00 0.00 4.04
992 1108 2.956132 ACACCTGATCTCCATCTCGAT 58.044 47.619 0.00 0.00 0.00 3.59
993 1109 2.890311 ACACCTGATCTCCATCTCGATC 59.110 50.000 0.00 0.00 37.22 3.69
994 1110 2.095314 CACCTGATCTCCATCTCGATCG 60.095 54.545 9.36 9.36 39.05 3.69
995 1111 2.224646 ACCTGATCTCCATCTCGATCGA 60.225 50.000 18.32 18.32 39.05 3.59
1077 1199 4.812476 CCGCTCATCAACGCCGGA 62.812 66.667 5.05 0.00 0.00 5.14
1908 2048 4.925054 GCAAAATGTACATGCATGTCTTGT 59.075 37.500 34.54 18.59 41.97 3.16
1916 2056 4.334552 ACATGCATGTCTTGTATTCACCA 58.665 39.130 26.61 0.00 35.87 4.17
1927 2067 5.469760 TCTTGTATTCACCATCTTGTGTGTG 59.530 40.000 0.00 0.00 37.51 3.82
1968 2108 3.563808 TGTTGTGTAGTTTCTGTCATGCC 59.436 43.478 0.00 0.00 0.00 4.40
1971 2111 4.203226 TGTGTAGTTTCTGTCATGCCAAA 58.797 39.130 0.00 0.00 0.00 3.28
2011 2156 5.723672 TTGGTGTTGTAAGTGTTGGAAAA 57.276 34.783 0.00 0.00 0.00 2.29
2353 2498 1.368579 GTGGACGTCGGGGAAGAAA 59.631 57.895 9.92 0.00 0.00 2.52
2374 2519 0.599558 CGTCGTTGGGGAAGTAGTCA 59.400 55.000 0.00 0.00 0.00 3.41
2458 2603 2.176247 ATCACCCTTCTCCCGTACAT 57.824 50.000 0.00 0.00 0.00 2.29
2532 2677 0.471617 CAAGCCGGGATGAGGAAGAT 59.528 55.000 2.18 0.00 0.00 2.40
2580 2725 1.671901 GGCGAGAGGAAGAGGACCTG 61.672 65.000 0.00 0.00 37.93 4.00
2581 2726 1.813192 CGAGAGGAAGAGGACCTGC 59.187 63.158 0.00 0.00 37.93 4.85
2582 2727 0.967887 CGAGAGGAAGAGGACCTGCA 60.968 60.000 0.00 0.00 37.93 4.41
2583 2728 0.823460 GAGAGGAAGAGGACCTGCAG 59.177 60.000 6.78 6.78 37.93 4.41
2584 2729 1.220477 GAGGAAGAGGACCTGCAGC 59.780 63.158 8.66 0.00 37.93 5.25
2585 2730 1.537397 AGGAAGAGGACCTGCAGCA 60.537 57.895 8.66 0.00 36.30 4.41
2586 2731 1.376553 GGAAGAGGACCTGCAGCAC 60.377 63.158 8.66 3.89 0.00 4.40
2587 2732 1.739562 GAAGAGGACCTGCAGCACG 60.740 63.158 8.66 0.00 0.00 5.34
2588 2733 3.890936 AAGAGGACCTGCAGCACGC 62.891 63.158 8.66 2.08 42.89 5.34
2592 2737 3.782244 GACCTGCAGCACGCGAAG 61.782 66.667 15.93 5.94 46.97 3.79
2593 2738 4.299547 ACCTGCAGCACGCGAAGA 62.300 61.111 15.93 0.00 46.97 2.87
2594 2739 3.485431 CCTGCAGCACGCGAAGAG 61.485 66.667 15.93 0.29 46.97 2.85
2595 2740 3.485431 CTGCAGCACGCGAAGAGG 61.485 66.667 15.93 0.00 46.97 3.69
2596 2741 4.299547 TGCAGCACGCGAAGAGGT 62.300 61.111 15.93 1.83 46.97 3.85
2597 2742 3.782244 GCAGCACGCGAAGAGGTG 61.782 66.667 15.93 15.96 40.95 4.00
2605 2750 3.479269 CGAAGAGGTGCGCCGTTC 61.479 66.667 19.25 19.25 40.50 3.95
2606 2751 2.048127 GAAGAGGTGCGCCGTTCT 60.048 61.111 20.99 13.25 40.50 3.01
2607 2752 2.048127 AAGAGGTGCGCCGTTCTC 60.048 61.111 11.42 6.61 40.50 2.87
2608 2753 3.916392 AAGAGGTGCGCCGTTCTCG 62.916 63.158 11.42 0.00 40.50 4.04
2618 2763 4.110493 CGTTCTCGGCTCATTCCC 57.890 61.111 0.00 0.00 0.00 3.97
2619 2764 1.878522 CGTTCTCGGCTCATTCCCG 60.879 63.158 0.00 0.00 46.88 5.14
2620 2765 2.174319 GTTCTCGGCTCATTCCCGC 61.174 63.158 0.00 0.00 45.19 6.13
2621 2766 2.655073 TTCTCGGCTCATTCCCGCA 61.655 57.895 0.00 0.00 45.19 5.69
2622 2767 2.125147 CTCGGCTCATTCCCGCAA 60.125 61.111 0.00 0.00 45.19 4.85
2623 2768 2.435938 TCGGCTCATTCCCGCAAC 60.436 61.111 0.00 0.00 45.19 4.17
2624 2769 3.508840 CGGCTCATTCCCGCAACC 61.509 66.667 0.00 0.00 39.22 3.77
2625 2770 3.140814 GGCTCATTCCCGCAACCC 61.141 66.667 0.00 0.00 0.00 4.11
2626 2771 3.508840 GCTCATTCCCGCAACCCG 61.509 66.667 0.00 0.00 0.00 5.28
2627 2772 3.508840 CTCATTCCCGCAACCCGC 61.509 66.667 0.00 0.00 35.03 6.13
2681 2826 4.148825 GCGCGTGGATGTCCCTCT 62.149 66.667 8.43 0.00 35.38 3.69
2682 2827 2.579201 CGCGTGGATGTCCCTCTT 59.421 61.111 0.00 0.00 35.38 2.85
2683 2828 1.811266 CGCGTGGATGTCCCTCTTG 60.811 63.158 0.00 0.00 35.38 3.02
2684 2829 1.296715 GCGTGGATGTCCCTCTTGT 59.703 57.895 0.00 0.00 35.38 3.16
2685 2830 0.321653 GCGTGGATGTCCCTCTTGTT 60.322 55.000 0.00 0.00 35.38 2.83
2686 2831 1.882352 GCGTGGATGTCCCTCTTGTTT 60.882 52.381 0.00 0.00 35.38 2.83
2687 2832 2.504367 CGTGGATGTCCCTCTTGTTTT 58.496 47.619 0.00 0.00 35.38 2.43
2688 2833 2.484264 CGTGGATGTCCCTCTTGTTTTC 59.516 50.000 0.00 0.00 35.38 2.29
2689 2834 3.486383 GTGGATGTCCCTCTTGTTTTCA 58.514 45.455 0.00 0.00 35.38 2.69
2690 2835 4.082125 GTGGATGTCCCTCTTGTTTTCAT 58.918 43.478 0.00 0.00 35.38 2.57
2691 2836 4.081406 TGGATGTCCCTCTTGTTTTCATG 58.919 43.478 0.00 0.00 35.38 3.07
2692 2837 3.119352 GGATGTCCCTCTTGTTTTCATGC 60.119 47.826 0.00 0.00 0.00 4.06
2693 2838 3.228188 TGTCCCTCTTGTTTTCATGCT 57.772 42.857 0.00 0.00 0.00 3.79
2694 2839 3.149196 TGTCCCTCTTGTTTTCATGCTC 58.851 45.455 0.00 0.00 0.00 4.26
2695 2840 3.149196 GTCCCTCTTGTTTTCATGCTCA 58.851 45.455 0.00 0.00 0.00 4.26
2696 2841 3.760684 GTCCCTCTTGTTTTCATGCTCAT 59.239 43.478 0.00 0.00 0.00 2.90
2697 2842 4.943705 GTCCCTCTTGTTTTCATGCTCATA 59.056 41.667 0.00 0.00 0.00 2.15
2698 2843 4.943705 TCCCTCTTGTTTTCATGCTCATAC 59.056 41.667 0.00 0.00 0.00 2.39
2699 2844 4.701651 CCCTCTTGTTTTCATGCTCATACA 59.298 41.667 0.00 0.00 0.00 2.29
2700 2845 5.183713 CCCTCTTGTTTTCATGCTCATACAA 59.816 40.000 0.00 0.00 0.00 2.41
2701 2846 6.320171 CCTCTTGTTTTCATGCTCATACAAG 58.680 40.000 13.21 13.21 42.18 3.16
2702 2847 6.072286 CCTCTTGTTTTCATGCTCATACAAGT 60.072 38.462 16.50 0.00 41.76 3.16
2703 2848 7.119699 CCTCTTGTTTTCATGCTCATACAAGTA 59.880 37.037 16.50 8.08 41.76 2.24
2704 2849 8.032952 TCTTGTTTTCATGCTCATACAAGTAG 57.967 34.615 16.50 1.38 41.76 2.57
2705 2850 6.741992 TGTTTTCATGCTCATACAAGTAGG 57.258 37.500 0.00 0.00 0.00 3.18
2706 2851 5.647658 TGTTTTCATGCTCATACAAGTAGGG 59.352 40.000 0.00 0.00 0.00 3.53
2707 2852 5.692115 TTTCATGCTCATACAAGTAGGGA 57.308 39.130 0.00 0.00 0.00 4.20
2708 2853 5.692115 TTCATGCTCATACAAGTAGGGAA 57.308 39.130 0.00 0.00 0.00 3.97
2709 2854 5.282055 TCATGCTCATACAAGTAGGGAAG 57.718 43.478 0.00 0.00 0.00 3.46
2710 2855 4.101585 TCATGCTCATACAAGTAGGGAAGG 59.898 45.833 0.00 0.00 0.00 3.46
2711 2856 3.719871 TGCTCATACAAGTAGGGAAGGA 58.280 45.455 0.00 0.00 0.00 3.36
2712 2857 3.706594 TGCTCATACAAGTAGGGAAGGAG 59.293 47.826 0.00 0.00 0.00 3.69
2713 2858 3.493524 GCTCATACAAGTAGGGAAGGAGC 60.494 52.174 0.00 0.00 38.49 4.70
2714 2859 3.039011 TCATACAAGTAGGGAAGGAGCC 58.961 50.000 0.00 0.00 0.00 4.70
2715 2860 2.942604 TACAAGTAGGGAAGGAGCCT 57.057 50.000 0.00 0.00 0.00 4.58
2716 2861 1.574263 ACAAGTAGGGAAGGAGCCTC 58.426 55.000 0.00 0.00 0.00 4.70
2717 2862 0.833949 CAAGTAGGGAAGGAGCCTCC 59.166 60.000 1.26 1.26 36.58 4.30
2718 2863 0.326713 AAGTAGGGAAGGAGCCTCCC 60.327 60.000 7.26 13.19 43.88 4.30
2721 2866 4.831613 GGGAAGGAGCCTCCCTTA 57.168 61.111 7.26 0.00 45.97 2.69
2722 2867 3.266195 GGGAAGGAGCCTCCCTTAT 57.734 57.895 7.26 0.00 45.97 1.73
2723 2868 2.417719 GGGAAGGAGCCTCCCTTATA 57.582 55.000 7.26 0.00 45.97 0.98
2724 2869 2.702748 GGGAAGGAGCCTCCCTTATAA 58.297 52.381 7.26 0.00 45.97 0.98
2725 2870 3.053826 GGGAAGGAGCCTCCCTTATAAA 58.946 50.000 7.26 0.00 45.97 1.40
2726 2871 3.073209 GGGAAGGAGCCTCCCTTATAAAG 59.927 52.174 7.26 0.00 45.97 1.85
2727 2872 3.974642 GGAAGGAGCCTCCCTTATAAAGA 59.025 47.826 7.26 0.00 45.97 2.52
2728 2873 4.041075 GGAAGGAGCCTCCCTTATAAAGAG 59.959 50.000 7.26 5.54 45.97 2.85
2729 2874 4.041075 GAAGGAGCCTCCCTTATAAAGAGG 59.959 50.000 20.08 20.08 45.97 3.69
2735 2880 5.037383 CCTCCCTTATAAAGAGGTCCAAC 57.963 47.826 17.61 0.00 41.96 3.77
2736 2881 4.443034 CCTCCCTTATAAAGAGGTCCAACG 60.443 50.000 17.61 0.00 41.96 4.10
2737 2882 3.118519 TCCCTTATAAAGAGGTCCAACGC 60.119 47.826 0.00 0.00 32.15 4.84
2738 2883 3.203716 CCTTATAAAGAGGTCCAACGCC 58.796 50.000 0.00 0.00 0.00 5.68
2739 2884 2.994186 TATAAAGAGGTCCAACGCCC 57.006 50.000 0.00 0.00 0.00 6.13
2740 2885 1.286248 ATAAAGAGGTCCAACGCCCT 58.714 50.000 0.00 0.00 0.00 5.19
2741 2886 0.611714 TAAAGAGGTCCAACGCCCTC 59.388 55.000 0.00 0.00 46.34 4.30
2743 2888 4.029472 GAGGTCCAACGCCCTCTA 57.971 61.111 0.00 0.00 43.29 2.43
2744 2889 2.283824 GAGGTCCAACGCCCTCTAA 58.716 57.895 0.00 0.00 43.29 2.10
2745 2890 0.611714 GAGGTCCAACGCCCTCTAAA 59.388 55.000 0.00 0.00 43.29 1.85
2746 2891 0.323957 AGGTCCAACGCCCTCTAAAC 59.676 55.000 0.00 0.00 0.00 2.01
2747 2892 0.323957 GGTCCAACGCCCTCTAAACT 59.676 55.000 0.00 0.00 0.00 2.66
2748 2893 1.551883 GGTCCAACGCCCTCTAAACTA 59.448 52.381 0.00 0.00 0.00 2.24
2749 2894 2.418334 GGTCCAACGCCCTCTAAACTAG 60.418 54.545 0.00 0.00 0.00 2.57
2750 2895 1.206371 TCCAACGCCCTCTAAACTAGC 59.794 52.381 0.00 0.00 0.00 3.42
2751 2896 1.066430 CCAACGCCCTCTAAACTAGCA 60.066 52.381 0.00 0.00 0.00 3.49
2752 2897 2.614481 CCAACGCCCTCTAAACTAGCAA 60.614 50.000 0.00 0.00 0.00 3.91
2753 2898 3.270877 CAACGCCCTCTAAACTAGCAAT 58.729 45.455 0.00 0.00 0.00 3.56
2754 2899 2.906354 ACGCCCTCTAAACTAGCAATG 58.094 47.619 0.00 0.00 0.00 2.82
2755 2900 2.236395 ACGCCCTCTAAACTAGCAATGT 59.764 45.455 0.00 0.00 0.00 2.71
2756 2901 2.609459 CGCCCTCTAAACTAGCAATGTG 59.391 50.000 0.00 0.00 0.00 3.21
2757 2902 2.945668 GCCCTCTAAACTAGCAATGTGG 59.054 50.000 0.00 0.00 0.00 4.17
2758 2903 3.545703 CCCTCTAAACTAGCAATGTGGG 58.454 50.000 0.00 0.00 0.00 4.61
2759 2904 3.199946 CCCTCTAAACTAGCAATGTGGGA 59.800 47.826 7.39 0.00 33.14 4.37
2760 2905 4.192317 CCTCTAAACTAGCAATGTGGGAC 58.808 47.826 0.00 0.00 0.00 4.46
2761 2906 4.080863 CCTCTAAACTAGCAATGTGGGACT 60.081 45.833 0.00 0.00 0.00 3.85
2762 2907 5.128827 CCTCTAAACTAGCAATGTGGGACTA 59.871 44.000 0.00 0.00 0.00 2.59
2763 2908 6.351881 CCTCTAAACTAGCAATGTGGGACTAA 60.352 42.308 0.00 0.00 0.00 2.24
2764 2909 7.011499 TCTAAACTAGCAATGTGGGACTAAA 57.989 36.000 0.00 0.00 0.00 1.85
2765 2910 5.959618 AAACTAGCAATGTGGGACTAAAC 57.040 39.130 0.00 0.00 0.00 2.01
2766 2911 4.910458 ACTAGCAATGTGGGACTAAACT 57.090 40.909 0.00 0.00 0.00 2.66
2767 2912 5.242795 ACTAGCAATGTGGGACTAAACTT 57.757 39.130 0.00 0.00 0.00 2.66
2768 2913 5.631119 ACTAGCAATGTGGGACTAAACTTT 58.369 37.500 0.00 0.00 0.00 2.66
2769 2914 6.775708 ACTAGCAATGTGGGACTAAACTTTA 58.224 36.000 0.00 0.00 0.00 1.85
2770 2915 6.879458 ACTAGCAATGTGGGACTAAACTTTAG 59.121 38.462 6.96 6.96 0.00 1.85
2771 2916 5.631119 AGCAATGTGGGACTAAACTTTAGT 58.369 37.500 13.09 13.09 0.00 2.24
2772 2917 6.775708 AGCAATGTGGGACTAAACTTTAGTA 58.224 36.000 13.18 0.00 0.00 1.82
2773 2918 6.879458 AGCAATGTGGGACTAAACTTTAGTAG 59.121 38.462 13.18 0.00 0.00 2.57
2774 2919 6.653740 GCAATGTGGGACTAAACTTTAGTAGT 59.346 38.462 13.18 0.00 39.32 2.73
2775 2920 7.820872 GCAATGTGGGACTAAACTTTAGTAGTA 59.179 37.037 13.18 1.88 35.54 1.82
2776 2921 9.886132 CAATGTGGGACTAAACTTTAGTAGTAT 57.114 33.333 13.18 3.50 35.54 2.12
2778 2923 8.071177 TGTGGGACTAAACTTTAGTAGTATCC 57.929 38.462 13.18 9.95 35.54 2.59
2779 2924 7.124750 TGTGGGACTAAACTTTAGTAGTATCCC 59.875 40.741 19.66 19.66 41.21 3.85
2780 2925 7.344093 GTGGGACTAAACTTTAGTAGTATCCCT 59.656 40.741 23.47 1.57 41.30 4.20
2781 2926 7.902941 TGGGACTAAACTTTAGTAGTATCCCTT 59.097 37.037 23.47 1.03 41.30 3.95
2782 2927 8.202811 GGGACTAAACTTTAGTAGTATCCCTTG 58.797 40.741 19.41 0.00 39.52 3.61
2783 2928 7.710044 GGACTAAACTTTAGTAGTATCCCTTGC 59.290 40.741 13.18 0.00 35.54 4.01
2784 2929 7.563020 ACTAAACTTTAGTAGTATCCCTTGCC 58.437 38.462 11.79 0.00 35.54 4.52
2785 2930 6.638021 AAACTTTAGTAGTATCCCTTGCCT 57.362 37.500 0.00 0.00 35.54 4.75
2786 2931 6.638021 AACTTTAGTAGTATCCCTTGCCTT 57.362 37.500 0.00 0.00 35.54 4.35
2787 2932 5.990668 ACTTTAGTAGTATCCCTTGCCTTG 58.009 41.667 0.00 0.00 34.56 3.61
2788 2933 4.417426 TTAGTAGTATCCCTTGCCTTGC 57.583 45.455 0.00 0.00 0.00 4.01
2789 2934 2.196595 AGTAGTATCCCTTGCCTTGCA 58.803 47.619 0.00 0.00 36.47 4.08
2790 2935 2.092914 AGTAGTATCCCTTGCCTTGCAC 60.093 50.000 0.00 0.00 38.71 4.57
2791 2936 0.698238 AGTATCCCTTGCCTTGCACA 59.302 50.000 0.00 0.00 38.71 4.57
2792 2937 1.075374 AGTATCCCTTGCCTTGCACAA 59.925 47.619 0.00 0.00 38.71 3.33
2793 2938 1.892474 GTATCCCTTGCCTTGCACAAA 59.108 47.619 0.00 0.00 38.71 2.83
2794 2939 1.648116 ATCCCTTGCCTTGCACAAAT 58.352 45.000 0.00 0.00 38.71 2.32
2795 2940 0.680618 TCCCTTGCCTTGCACAAATG 59.319 50.000 0.00 0.00 38.71 2.32
2796 2941 0.320946 CCCTTGCCTTGCACAAATGG 60.321 55.000 0.00 0.00 38.71 3.16
2797 2942 0.320946 CCTTGCCTTGCACAAATGGG 60.321 55.000 0.00 0.00 38.71 4.00
2798 2943 0.952010 CTTGCCTTGCACAAATGGGC 60.952 55.000 0.00 0.00 46.69 5.36
2799 2944 1.409251 TTGCCTTGCACAAATGGGCT 61.409 50.000 9.34 0.00 46.62 5.19
2800 2945 0.541530 TGCCTTGCACAAATGGGCTA 60.542 50.000 9.34 0.00 46.62 3.93
2801 2946 0.607620 GCCTTGCACAAATGGGCTAA 59.392 50.000 9.34 1.31 46.62 3.09
2802 2947 1.404583 GCCTTGCACAAATGGGCTAAG 60.405 52.381 9.34 10.23 46.62 2.18
2803 2948 1.895131 CCTTGCACAAATGGGCTAAGT 59.105 47.619 9.34 0.00 46.62 2.24
2804 2949 2.353011 CCTTGCACAAATGGGCTAAGTG 60.353 50.000 9.34 0.00 46.62 3.16
2805 2950 1.255882 TGCACAAATGGGCTAAGTGG 58.744 50.000 9.34 0.00 46.62 4.00
2806 2951 0.532115 GCACAAATGGGCTAAGTGGG 59.468 55.000 0.00 0.00 42.27 4.61
2807 2952 0.532115 CACAAATGGGCTAAGTGGGC 59.468 55.000 0.00 0.00 0.00 5.36
2814 2959 2.137692 GGCTAAGTGGGCCTCTAGG 58.862 63.158 8.81 6.01 45.57 3.02
2815 2960 0.398664 GGCTAAGTGGGCCTCTAGGA 60.399 60.000 8.81 0.00 45.57 2.94
2816 2961 1.723288 GCTAAGTGGGCCTCTAGGAT 58.277 55.000 8.81 0.00 37.39 3.24
2817 2962 2.050918 GCTAAGTGGGCCTCTAGGATT 58.949 52.381 8.81 0.00 37.39 3.01
2818 2963 2.439880 GCTAAGTGGGCCTCTAGGATTT 59.560 50.000 8.81 0.00 37.39 2.17
2819 2964 3.646637 GCTAAGTGGGCCTCTAGGATTTA 59.353 47.826 8.81 0.00 37.39 1.40
2820 2965 4.287326 GCTAAGTGGGCCTCTAGGATTTAT 59.713 45.833 8.81 0.00 37.39 1.40
2821 2966 5.221945 GCTAAGTGGGCCTCTAGGATTTATT 60.222 44.000 8.81 0.00 37.39 1.40
2822 2967 6.013639 GCTAAGTGGGCCTCTAGGATTTATTA 60.014 42.308 8.81 0.00 37.39 0.98
2823 2968 6.441088 AAGTGGGCCTCTAGGATTTATTAG 57.559 41.667 8.81 0.00 37.39 1.73
2824 2969 4.846940 AGTGGGCCTCTAGGATTTATTAGG 59.153 45.833 6.27 0.00 37.39 2.69
2825 2970 4.844655 GTGGGCCTCTAGGATTTATTAGGA 59.155 45.833 4.53 0.00 37.39 2.94
2826 2971 5.309806 GTGGGCCTCTAGGATTTATTAGGAA 59.690 44.000 4.53 0.00 37.39 3.36
2827 2972 6.012421 GTGGGCCTCTAGGATTTATTAGGAAT 60.012 42.308 4.53 0.00 37.39 3.01
2828 2973 6.566480 TGGGCCTCTAGGATTTATTAGGAATT 59.434 38.462 4.53 0.00 37.39 2.17
2829 2974 7.075009 TGGGCCTCTAGGATTTATTAGGAATTT 59.925 37.037 4.53 0.00 37.39 1.82
2830 2975 7.612244 GGGCCTCTAGGATTTATTAGGAATTTC 59.388 40.741 0.84 0.00 37.39 2.17
2831 2976 8.387039 GGCCTCTAGGATTTATTAGGAATTTCT 58.613 37.037 0.00 0.00 37.39 2.52
2832 2977 9.225436 GCCTCTAGGATTTATTAGGAATTTCTG 57.775 37.037 0.00 0.00 37.39 3.02
2847 2992 8.011844 AGGAATTTCTGAAATAGTTATTGGGC 57.988 34.615 15.45 0.00 0.00 5.36
2848 2993 7.841222 AGGAATTTCTGAAATAGTTATTGGGCT 59.159 33.333 15.45 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.770097 CTGCTATCATCTTTCCACTTTAGATTA 57.230 33.333 0.00 0.00 0.00 1.75
60 61 7.565323 ACCAATTTTCTCTTCTGCTATCATC 57.435 36.000 0.00 0.00 0.00 2.92
94 95 7.300556 TGCCCAACATATTGCATATAATGTT 57.699 32.000 9.42 9.42 34.17 2.71
98 99 6.725369 AGGATTGCCCAACATATTGCATATAA 59.275 34.615 0.00 0.00 37.41 0.98
121 128 2.034558 CACACTGGTTTGGTAAGCAAGG 59.965 50.000 0.00 0.00 40.90 3.61
126 133 4.733523 GCTTGAACACACTGGTTTGGTAAG 60.734 45.833 0.00 0.00 0.00 2.34
127 134 3.129638 GCTTGAACACACTGGTTTGGTAA 59.870 43.478 0.00 0.00 0.00 2.85
128 135 2.685897 GCTTGAACACACTGGTTTGGTA 59.314 45.455 0.00 0.00 0.00 3.25
131 138 1.750778 AGGCTTGAACACACTGGTTTG 59.249 47.619 0.00 0.00 0.00 2.93
138 145 3.826466 GCTAAATGAGGCTTGAACACAC 58.174 45.455 0.00 0.00 0.00 3.82
157 164 1.977854 TCATATAACGGGCTCATGGCT 59.022 47.619 6.20 0.00 41.46 4.75
160 167 3.390135 ACGTTCATATAACGGGCTCATG 58.610 45.455 14.01 0.00 46.86 3.07
170 177 5.180271 GGTTTGGACAGGACGTTCATATAA 58.820 41.667 0.00 0.00 31.30 0.98
171 178 4.383335 GGGTTTGGACAGGACGTTCATATA 60.383 45.833 0.00 0.00 31.30 0.86
172 179 3.606687 GGTTTGGACAGGACGTTCATAT 58.393 45.455 0.00 0.00 31.30 1.78
173 180 2.289819 GGGTTTGGACAGGACGTTCATA 60.290 50.000 0.00 0.00 31.30 2.15
174 181 1.544759 GGGTTTGGACAGGACGTTCAT 60.545 52.381 0.00 0.00 31.30 2.57
176 183 0.179040 TGGGTTTGGACAGGACGTTC 60.179 55.000 0.00 0.00 0.00 3.95
242 263 4.613167 CGACGTGATTCTACCTGGCTATAC 60.613 50.000 0.00 0.00 0.00 1.47
243 264 3.501062 CGACGTGATTCTACCTGGCTATA 59.499 47.826 0.00 0.00 0.00 1.31
251 272 1.997606 CCAAACCGACGTGATTCTACC 59.002 52.381 0.00 0.00 0.00 3.18
252 273 1.392510 GCCAAACCGACGTGATTCTAC 59.607 52.381 0.00 0.00 0.00 2.59
253 274 1.274167 AGCCAAACCGACGTGATTCTA 59.726 47.619 0.00 0.00 0.00 2.10
254 275 0.034896 AGCCAAACCGACGTGATTCT 59.965 50.000 0.00 0.00 0.00 2.40
255 276 0.442699 GAGCCAAACCGACGTGATTC 59.557 55.000 0.00 0.00 0.00 2.52
256 277 0.034896 AGAGCCAAACCGACGTGATT 59.965 50.000 0.00 0.00 0.00 2.57
257 278 0.034896 AAGAGCCAAACCGACGTGAT 59.965 50.000 0.00 0.00 0.00 3.06
258 279 0.878523 CAAGAGCCAAACCGACGTGA 60.879 55.000 0.00 0.00 0.00 4.35
259 280 1.157870 ACAAGAGCCAAACCGACGTG 61.158 55.000 0.00 0.00 0.00 4.49
260 281 0.463116 AACAAGAGCCAAACCGACGT 60.463 50.000 0.00 0.00 0.00 4.34
261 282 0.041312 CAACAAGAGCCAAACCGACG 60.041 55.000 0.00 0.00 0.00 5.12
262 283 0.310854 CCAACAAGAGCCAAACCGAC 59.689 55.000 0.00 0.00 0.00 4.79
263 284 0.106918 ACCAACAAGAGCCAAACCGA 60.107 50.000 0.00 0.00 0.00 4.69
264 285 0.744281 AACCAACAAGAGCCAAACCG 59.256 50.000 0.00 0.00 0.00 4.44
265 286 2.031870 AGAACCAACAAGAGCCAAACC 58.968 47.619 0.00 0.00 0.00 3.27
266 287 3.447742 CAAGAACCAACAAGAGCCAAAC 58.552 45.455 0.00 0.00 0.00 2.93
267 288 2.430332 CCAAGAACCAACAAGAGCCAAA 59.570 45.455 0.00 0.00 0.00 3.28
268 289 2.031120 CCAAGAACCAACAAGAGCCAA 58.969 47.619 0.00 0.00 0.00 4.52
269 290 1.064017 ACCAAGAACCAACAAGAGCCA 60.064 47.619 0.00 0.00 0.00 4.75
270 291 1.338020 CACCAAGAACCAACAAGAGCC 59.662 52.381 0.00 0.00 0.00 4.70
271 292 2.297701 TCACCAAGAACCAACAAGAGC 58.702 47.619 0.00 0.00 0.00 4.09
272 293 5.284079 CAAATCACCAAGAACCAACAAGAG 58.716 41.667 0.00 0.00 0.00 2.85
277 298 2.365293 AGCCAAATCACCAAGAACCAAC 59.635 45.455 0.00 0.00 0.00 3.77
287 308 3.619038 CGTAGAAGAAGAGCCAAATCACC 59.381 47.826 0.00 0.00 0.00 4.02
291 312 5.734720 TCAATCGTAGAAGAAGAGCCAAAT 58.265 37.500 0.00 0.00 43.58 2.32
342 363 9.990868 AAATTTGTTGGGTTTAGTCTCCTATAT 57.009 29.630 0.00 0.00 0.00 0.86
343 364 9.816787 AAAATTTGTTGGGTTTAGTCTCCTATA 57.183 29.630 0.00 0.00 0.00 1.31
344 365 8.721133 AAAATTTGTTGGGTTTAGTCTCCTAT 57.279 30.769 0.00 0.00 0.00 2.57
345 366 8.002459 AGAAAATTTGTTGGGTTTAGTCTCCTA 58.998 33.333 0.00 0.00 0.00 2.94
346 367 6.839134 AGAAAATTTGTTGGGTTTAGTCTCCT 59.161 34.615 0.00 0.00 0.00 3.69
347 368 7.050970 AGAAAATTTGTTGGGTTTAGTCTCC 57.949 36.000 0.00 0.00 0.00 3.71
370 391 1.197721 GACAAACCGACATGCAAGGAG 59.802 52.381 8.46 1.86 0.00 3.69
413 434 7.402640 CCAAGAGCTTTCGATCATAGTTTAAC 58.597 38.462 0.00 0.00 0.00 2.01
422 443 1.442769 GTGCCAAGAGCTTTCGATCA 58.557 50.000 0.00 0.00 44.23 2.92
458 479 4.642885 CCGTTAGGCCTGAAATAAATCCAA 59.357 41.667 17.99 0.00 0.00 3.53
480 501 4.643385 CACGCAACGCACGTCACC 62.643 66.667 0.00 0.00 42.96 4.02
493 514 0.599204 TGAAACGTCTCCTTCCACGC 60.599 55.000 0.00 0.00 39.73 5.34
494 515 1.860676 TTGAAACGTCTCCTTCCACG 58.139 50.000 0.00 0.00 41.90 4.94
499 520 6.464222 TCATACTTGATTGAAACGTCTCCTT 58.536 36.000 0.00 0.00 0.00 3.36
502 523 7.449027 GTCTTCATACTTGATTGAAACGTCTC 58.551 38.462 0.00 0.00 31.85 3.36
507 528 6.792250 CACACGTCTTCATACTTGATTGAAAC 59.208 38.462 0.00 0.00 31.85 2.78
510 531 5.405269 CACACACGTCTTCATACTTGATTGA 59.595 40.000 0.00 0.00 0.00 2.57
512 533 4.690748 CCACACACGTCTTCATACTTGATT 59.309 41.667 0.00 0.00 0.00 2.57
513 534 4.245660 CCACACACGTCTTCATACTTGAT 58.754 43.478 0.00 0.00 0.00 2.57
516 537 3.069016 TCACCACACACGTCTTCATACTT 59.931 43.478 0.00 0.00 0.00 2.24
518 539 2.729882 GTCACCACACACGTCTTCATAC 59.270 50.000 0.00 0.00 0.00 2.39
521 542 0.821517 AGTCACCACACACGTCTTCA 59.178 50.000 0.00 0.00 0.00 3.02
526 547 1.338294 TGACAAAGTCACCACACACGT 60.338 47.619 0.00 0.00 37.67 4.49
528 549 3.627577 AGATTGACAAAGTCACCACACAC 59.372 43.478 0.00 0.00 42.60 3.82
530 551 3.876914 TGAGATTGACAAAGTCACCACAC 59.123 43.478 0.00 0.00 42.60 3.82
535 556 7.864379 ACATCATTTTGAGATTGACAAAGTCAC 59.136 33.333 0.00 0.00 42.60 3.67
542 563 4.379708 CGGCACATCATTTTGAGATTGACA 60.380 41.667 0.00 0.00 0.00 3.58
543 564 4.100529 CGGCACATCATTTTGAGATTGAC 58.899 43.478 0.00 0.00 0.00 3.18
554 575 2.117156 GCTGAGCCGGCACATCATT 61.117 57.895 31.54 5.22 35.55 2.57
572 593 2.360852 CACCCCAGGAGCAGCTTG 60.361 66.667 0.00 0.00 0.00 4.01
573 594 4.357279 GCACCCCAGGAGCAGCTT 62.357 66.667 0.00 0.00 39.08 3.74
582 609 3.558931 TTATAGATGTGTGCACCCCAG 57.441 47.619 15.69 0.00 0.00 4.45
584 611 5.359576 TCATTTTTATAGATGTGTGCACCCC 59.640 40.000 15.69 5.46 0.00 4.95
588 615 7.686438 ACACTCATTTTTATAGATGTGTGCA 57.314 32.000 14.48 0.00 44.96 4.57
589 616 7.846107 CGTACACTCATTTTTATAGATGTGTGC 59.154 37.037 14.48 0.00 44.96 4.57
590 617 7.846107 GCGTACACTCATTTTTATAGATGTGTG 59.154 37.037 13.54 13.54 45.80 3.82
591 618 7.253983 CGCGTACACTCATTTTTATAGATGTGT 60.254 37.037 0.00 0.00 40.02 3.72
593 620 6.292168 GCGCGTACACTCATTTTTATAGATGT 60.292 38.462 8.43 0.00 0.00 3.06
594 621 6.065153 GCGCGTACACTCATTTTTATAGATG 58.935 40.000 8.43 0.00 0.00 2.90
595 622 5.751509 TGCGCGTACACTCATTTTTATAGAT 59.248 36.000 8.43 0.00 0.00 1.98
597 624 5.383984 TGCGCGTACACTCATTTTTATAG 57.616 39.130 8.43 0.00 0.00 1.31
598 625 5.977171 ATGCGCGTACACTCATTTTTATA 57.023 34.783 8.43 0.00 0.00 0.98
599 626 4.875544 ATGCGCGTACACTCATTTTTAT 57.124 36.364 8.43 0.00 0.00 1.40
601 628 4.094294 ACATATGCGCGTACACTCATTTTT 59.906 37.500 12.39 0.00 0.00 1.94
602 629 3.621268 ACATATGCGCGTACACTCATTTT 59.379 39.130 12.39 0.00 0.00 1.82
603 630 3.194861 ACATATGCGCGTACACTCATTT 58.805 40.909 12.39 0.00 0.00 2.32
604 631 2.821546 ACATATGCGCGTACACTCATT 58.178 42.857 12.39 0.00 0.00 2.57
605 632 2.509052 ACATATGCGCGTACACTCAT 57.491 45.000 12.39 3.72 0.00 2.90
613 652 2.127251 CACACTCATACATATGCGCGT 58.873 47.619 8.43 7.55 33.76 6.01
614 653 2.127251 ACACACTCATACATATGCGCG 58.873 47.619 0.00 0.00 33.76 6.86
616 655 7.084486 ACATAGTACACACTCATACATATGCG 58.916 38.462 1.58 0.00 36.14 4.73
662 708 9.681062 TGCTAGTTTAACAGGCTATATTTTCTT 57.319 29.630 11.82 0.00 0.00 2.52
663 709 9.331282 CTGCTAGTTTAACAGGCTATATTTTCT 57.669 33.333 11.82 0.00 0.00 2.52
664 710 8.560374 CCTGCTAGTTTAACAGGCTATATTTTC 58.440 37.037 11.82 0.00 44.16 2.29
689 735 1.576356 CTCCATTTCTGCTACGAGCC 58.424 55.000 0.00 0.00 41.51 4.70
691 737 2.200067 CAGCTCCATTTCTGCTACGAG 58.800 52.381 0.00 0.00 35.05 4.18
700 746 3.950395 ACAGATTAAGGCAGCTCCATTTC 59.050 43.478 5.21 0.00 37.29 2.17
701 747 3.698040 CACAGATTAAGGCAGCTCCATTT 59.302 43.478 5.21 0.00 37.29 2.32
703 749 2.422519 CCACAGATTAAGGCAGCTCCAT 60.423 50.000 5.21 0.00 37.29 3.41
704 750 1.065199 CCACAGATTAAGGCAGCTCCA 60.065 52.381 5.21 0.00 37.29 3.86
728 799 1.410004 TACCTCCATCTTACGGGCAG 58.590 55.000 0.00 0.00 0.00 4.85
749 820 4.340617 TCTCAAGTGACCAACCAACTTTT 58.659 39.130 0.00 0.00 0.00 2.27
751 822 3.644966 TCTCAAGTGACCAACCAACTT 57.355 42.857 0.00 0.00 0.00 2.66
752 823 3.480470 CATCTCAAGTGACCAACCAACT 58.520 45.455 0.00 0.00 0.00 3.16
777 878 3.739300 CGGTGTAAGTAAGTGTGAACTGG 59.261 47.826 0.00 0.00 0.00 4.00
785 886 3.426525 GGTTTCGTCGGTGTAAGTAAGTG 59.573 47.826 0.00 0.00 0.00 3.16
791 896 1.142474 GTGGGTTTCGTCGGTGTAAG 58.858 55.000 0.00 0.00 0.00 2.34
802 907 2.676471 ATGCGGCCTGTGGGTTTC 60.676 61.111 0.00 0.00 34.45 2.78
812 917 3.988525 TGGTTTGCACATGCGGCC 61.989 61.111 7.42 0.00 45.83 6.13
828 933 2.681097 GCCCTAGCTGGTAAAAGGAGTG 60.681 54.545 0.00 0.00 35.50 3.51
833 938 1.678101 GCATGCCCTAGCTGGTAAAAG 59.322 52.381 6.36 0.00 40.80 2.27
834 939 1.005332 TGCATGCCCTAGCTGGTAAAA 59.995 47.619 16.68 0.00 40.80 1.52
835 940 0.623194 TGCATGCCCTAGCTGGTAAA 59.377 50.000 16.68 0.00 40.80 2.01
836 941 0.846015 ATGCATGCCCTAGCTGGTAA 59.154 50.000 16.68 0.00 40.80 2.85
868 973 8.105097 GCTAGCTAGCTGCATGTATATATAGA 57.895 38.462 33.71 0.00 45.62 1.98
911 1023 1.596727 GCGATGATTTGCTCTCTCCAC 59.403 52.381 0.00 0.00 0.00 4.02
913 1025 1.224965 GGCGATGATTTGCTCTCTCC 58.775 55.000 0.00 0.00 32.36 3.71
918 1030 1.677576 TGAATGGGCGATGATTTGCTC 59.322 47.619 0.00 0.00 32.78 4.26
949 1065 2.417719 GATTGATACGGTGGAGATGGC 58.582 52.381 0.00 0.00 0.00 4.40
972 1088 2.443958 TCGAGATGGAGATCAGGTGT 57.556 50.000 0.00 0.00 0.00 4.16
973 1089 2.095314 CGATCGAGATGGAGATCAGGTG 60.095 54.545 10.26 0.00 42.36 4.00
974 1090 2.158559 CGATCGAGATGGAGATCAGGT 58.841 52.381 10.26 0.00 42.36 4.00
975 1091 2.161410 GTCGATCGAGATGGAGATCAGG 59.839 54.545 20.09 0.00 42.36 3.86
976 1092 2.159720 CGTCGATCGAGATGGAGATCAG 60.160 54.545 20.09 0.00 42.36 2.90
977 1093 1.801178 CGTCGATCGAGATGGAGATCA 59.199 52.381 20.09 0.00 42.36 2.92
978 1094 2.070028 TCGTCGATCGAGATGGAGATC 58.930 52.381 20.09 2.05 44.01 2.75
979 1095 2.171341 TCGTCGATCGAGATGGAGAT 57.829 50.000 20.09 0.00 44.01 2.75
980 1096 3.680842 TCGTCGATCGAGATGGAGA 57.319 52.632 20.09 8.46 44.01 3.71
988 1104 1.226575 GCACCATGTCGTCGATCGA 60.227 57.895 15.15 15.15 46.83 3.59
989 1105 2.230940 GGCACCATGTCGTCGATCG 61.231 63.158 9.36 9.36 41.41 3.69
990 1106 3.706140 GGCACCATGTCGTCGATC 58.294 61.111 0.00 0.00 0.00 3.69
1077 1199 2.753029 GACCACTTGCCCAGCTCT 59.247 61.111 0.00 0.00 0.00 4.09
1903 2043 5.469760 CACACACAAGATGGTGAATACAAGA 59.530 40.000 0.00 0.00 41.32 3.02
1908 2048 6.707440 AAAACACACACAAGATGGTGAATA 57.293 33.333 0.00 0.00 41.32 1.75
1945 2085 4.319766 GGCATGACAGAAACTACACAACAG 60.320 45.833 0.00 0.00 0.00 3.16
1946 2086 3.563808 GGCATGACAGAAACTACACAACA 59.436 43.478 0.00 0.00 0.00 3.33
1950 2090 4.829064 TTTGGCATGACAGAAACTACAC 57.171 40.909 0.00 0.00 0.00 2.90
1959 2099 1.001487 TGCTCGTTTTTGGCATGACAG 60.001 47.619 0.00 0.00 0.00 3.51
2353 2498 1.475682 GACTACTTCCCCAACGACGAT 59.524 52.381 0.00 0.00 0.00 3.73
2458 2603 0.468226 AGACCGCACCTTTTGAGTCA 59.532 50.000 0.00 0.00 34.15 3.41
2532 2677 1.067669 CCAATCTCTGCGCTACTGCTA 59.932 52.381 9.73 0.00 36.97 3.49
2580 2725 3.782244 CACCTCTTCGCGTGCTGC 61.782 66.667 5.77 0.00 41.47 5.25
2588 2733 3.479269 GAACGGCGCACCTCTTCG 61.479 66.667 10.83 3.69 0.00 3.79
2589 2734 2.048127 AGAACGGCGCACCTCTTC 60.048 61.111 10.83 1.59 0.00 2.87
2590 2735 2.048127 GAGAACGGCGCACCTCTT 60.048 61.111 10.83 0.00 0.00 2.85
2591 2736 4.421479 CGAGAACGGCGCACCTCT 62.421 66.667 10.83 6.93 35.72 3.69
2601 2746 1.878522 CGGGAATGAGCCGAGAACG 60.879 63.158 0.00 0.00 39.43 3.95
2602 2747 2.174319 GCGGGAATGAGCCGAGAAC 61.174 63.158 0.00 0.00 0.00 3.01
2603 2748 2.178876 TTGCGGGAATGAGCCGAGAA 62.179 55.000 0.00 0.00 0.00 2.87
2604 2749 2.655073 TTGCGGGAATGAGCCGAGA 61.655 57.895 0.00 0.00 0.00 4.04
2605 2750 2.125147 TTGCGGGAATGAGCCGAG 60.125 61.111 0.00 0.00 0.00 4.63
2606 2751 2.435938 GTTGCGGGAATGAGCCGA 60.436 61.111 0.00 0.00 0.00 5.54
2607 2752 3.508840 GGTTGCGGGAATGAGCCG 61.509 66.667 0.00 0.00 0.00 5.52
2608 2753 3.140814 GGGTTGCGGGAATGAGCC 61.141 66.667 0.00 0.00 0.00 4.70
2609 2754 3.508840 CGGGTTGCGGGAATGAGC 61.509 66.667 0.00 0.00 0.00 4.26
2610 2755 3.508840 GCGGGTTGCGGGAATGAG 61.509 66.667 0.00 0.00 0.00 2.90
2664 2809 3.665675 AAGAGGGACATCCACGCGC 62.666 63.158 5.73 0.00 38.24 6.86
2665 2810 1.811266 CAAGAGGGACATCCACGCG 60.811 63.158 3.53 3.53 38.24 6.01
2666 2811 0.321653 AACAAGAGGGACATCCACGC 60.322 55.000 0.00 0.00 38.24 5.34
2667 2812 2.185004 AAACAAGAGGGACATCCACG 57.815 50.000 0.00 0.00 38.24 4.94
2668 2813 3.486383 TGAAAACAAGAGGGACATCCAC 58.514 45.455 0.00 0.00 38.24 4.02
2669 2814 3.874383 TGAAAACAAGAGGGACATCCA 57.126 42.857 0.00 0.00 38.24 3.41
2670 2815 3.119352 GCATGAAAACAAGAGGGACATCC 60.119 47.826 0.00 0.00 0.00 3.51
2671 2816 3.760684 AGCATGAAAACAAGAGGGACATC 59.239 43.478 0.00 0.00 0.00 3.06
2672 2817 3.760684 GAGCATGAAAACAAGAGGGACAT 59.239 43.478 0.00 0.00 0.00 3.06
2673 2818 3.149196 GAGCATGAAAACAAGAGGGACA 58.851 45.455 0.00 0.00 0.00 4.02
2674 2819 3.149196 TGAGCATGAAAACAAGAGGGAC 58.851 45.455 0.00 0.00 0.00 4.46
2675 2820 3.507162 TGAGCATGAAAACAAGAGGGA 57.493 42.857 0.00 0.00 0.00 4.20
2676 2821 4.701651 TGTATGAGCATGAAAACAAGAGGG 59.298 41.667 0.00 0.00 0.00 4.30
2677 2822 5.885230 TGTATGAGCATGAAAACAAGAGG 57.115 39.130 0.00 0.00 0.00 3.69
2678 2823 6.906659 ACTTGTATGAGCATGAAAACAAGAG 58.093 36.000 21.53 6.24 44.03 2.85
2679 2824 6.882610 ACTTGTATGAGCATGAAAACAAGA 57.117 33.333 21.53 0.00 44.03 3.02
2680 2825 7.246311 CCTACTTGTATGAGCATGAAAACAAG 58.754 38.462 16.47 16.47 45.76 3.16
2681 2826 6.150976 CCCTACTTGTATGAGCATGAAAACAA 59.849 38.462 0.00 0.00 0.00 2.83
2682 2827 5.647658 CCCTACTTGTATGAGCATGAAAACA 59.352 40.000 0.00 0.00 0.00 2.83
2683 2828 5.880332 TCCCTACTTGTATGAGCATGAAAAC 59.120 40.000 0.00 0.00 0.00 2.43
2684 2829 6.061022 TCCCTACTTGTATGAGCATGAAAA 57.939 37.500 0.00 0.00 0.00 2.29
2685 2830 5.692115 TCCCTACTTGTATGAGCATGAAA 57.308 39.130 0.00 0.00 0.00 2.69
2686 2831 5.396772 CCTTCCCTACTTGTATGAGCATGAA 60.397 44.000 0.00 0.00 0.00 2.57
2687 2832 4.101585 CCTTCCCTACTTGTATGAGCATGA 59.898 45.833 0.00 0.00 0.00 3.07
2688 2833 4.101585 TCCTTCCCTACTTGTATGAGCATG 59.898 45.833 0.00 0.00 0.00 4.06
2689 2834 4.298626 TCCTTCCCTACTTGTATGAGCAT 58.701 43.478 0.00 0.00 0.00 3.79
2690 2835 3.706594 CTCCTTCCCTACTTGTATGAGCA 59.293 47.826 0.00 0.00 0.00 4.26
2691 2836 3.493524 GCTCCTTCCCTACTTGTATGAGC 60.494 52.174 0.00 0.00 36.34 4.26
2692 2837 3.070302 GGCTCCTTCCCTACTTGTATGAG 59.930 52.174 0.00 0.00 0.00 2.90
2693 2838 3.039011 GGCTCCTTCCCTACTTGTATGA 58.961 50.000 0.00 0.00 0.00 2.15
2694 2839 3.041946 AGGCTCCTTCCCTACTTGTATG 58.958 50.000 0.00 0.00 0.00 2.39
2695 2840 3.310193 GAGGCTCCTTCCCTACTTGTAT 58.690 50.000 2.15 0.00 31.41 2.29
2696 2841 2.626149 GGAGGCTCCTTCCCTACTTGTA 60.626 54.545 26.44 0.00 32.53 2.41
2697 2842 1.574263 GAGGCTCCTTCCCTACTTGT 58.426 55.000 2.15 0.00 31.41 3.16
2698 2843 0.833949 GGAGGCTCCTTCCCTACTTG 59.166 60.000 26.44 0.00 32.53 3.16
2699 2844 0.326713 GGGAGGCTCCTTCCCTACTT 60.327 60.000 31.39 0.00 40.46 2.24
2700 2845 1.315216 GGGAGGCTCCTTCCCTACT 59.685 63.158 31.39 0.00 40.46 2.57
2701 2846 3.973458 GGGAGGCTCCTTCCCTAC 58.027 66.667 31.39 10.61 40.46 3.18
2704 2849 2.417719 TATAAGGGAGGCTCCTTCCC 57.582 55.000 31.39 17.15 45.22 3.97
2705 2850 3.974642 TCTTTATAAGGGAGGCTCCTTCC 59.025 47.826 31.39 16.23 45.22 3.46
2706 2851 4.041075 CCTCTTTATAAGGGAGGCTCCTTC 59.959 50.000 31.39 16.97 45.22 3.46
2708 2853 3.592865 CCTCTTTATAAGGGAGGCTCCT 58.407 50.000 31.39 16.58 39.87 3.69
2714 2859 4.694339 CGTTGGACCTCTTTATAAGGGAG 58.306 47.826 9.31 9.31 38.29 4.30
2715 2860 3.118519 GCGTTGGACCTCTTTATAAGGGA 60.119 47.826 7.80 0.80 38.29 4.20
2716 2861 3.203716 GCGTTGGACCTCTTTATAAGGG 58.796 50.000 0.00 0.00 38.29 3.95
2717 2862 3.203716 GGCGTTGGACCTCTTTATAAGG 58.796 50.000 0.00 0.00 39.96 2.69
2718 2863 3.203716 GGGCGTTGGACCTCTTTATAAG 58.796 50.000 0.00 0.00 38.83 1.73
2719 2864 3.271055 GGGCGTTGGACCTCTTTATAA 57.729 47.619 0.00 0.00 38.83 0.98
2720 2865 2.994186 GGGCGTTGGACCTCTTTATA 57.006 50.000 0.00 0.00 38.83 0.98
2721 2866 3.875865 GGGCGTTGGACCTCTTTAT 57.124 52.632 0.00 0.00 38.83 1.40
2728 2873 0.323957 AGTTTAGAGGGCGTTGGACC 59.676 55.000 0.00 0.00 44.27 4.46
2729 2874 2.889852 CTAGTTTAGAGGGCGTTGGAC 58.110 52.381 0.00 0.00 0.00 4.02
2730 2875 1.206371 GCTAGTTTAGAGGGCGTTGGA 59.794 52.381 0.00 0.00 0.00 3.53
2731 2876 1.066430 TGCTAGTTTAGAGGGCGTTGG 60.066 52.381 0.00 0.00 0.00 3.77
2732 2877 2.380084 TGCTAGTTTAGAGGGCGTTG 57.620 50.000 0.00 0.00 0.00 4.10
2733 2878 3.270877 CATTGCTAGTTTAGAGGGCGTT 58.729 45.455 0.00 0.00 0.00 4.84
2734 2879 2.236395 ACATTGCTAGTTTAGAGGGCGT 59.764 45.455 0.00 0.00 0.00 5.68
2735 2880 2.609459 CACATTGCTAGTTTAGAGGGCG 59.391 50.000 0.00 0.00 0.00 6.13
2736 2881 2.945668 CCACATTGCTAGTTTAGAGGGC 59.054 50.000 0.00 0.00 0.00 5.19
2737 2882 3.199946 TCCCACATTGCTAGTTTAGAGGG 59.800 47.826 0.00 0.00 0.00 4.30
2738 2883 4.080863 AGTCCCACATTGCTAGTTTAGAGG 60.081 45.833 0.00 0.00 0.00 3.69
2739 2884 5.091261 AGTCCCACATTGCTAGTTTAGAG 57.909 43.478 0.00 0.00 0.00 2.43
2740 2885 6.614694 TTAGTCCCACATTGCTAGTTTAGA 57.385 37.500 0.00 0.00 0.00 2.10
2741 2886 6.879458 AGTTTAGTCCCACATTGCTAGTTTAG 59.121 38.462 0.00 0.00 0.00 1.85
2742 2887 6.775708 AGTTTAGTCCCACATTGCTAGTTTA 58.224 36.000 0.00 0.00 0.00 2.01
2743 2888 5.631119 AGTTTAGTCCCACATTGCTAGTTT 58.369 37.500 0.00 0.00 0.00 2.66
2744 2889 5.242795 AGTTTAGTCCCACATTGCTAGTT 57.757 39.130 0.00 0.00 0.00 2.24
2745 2890 4.910458 AGTTTAGTCCCACATTGCTAGT 57.090 40.909 0.00 0.00 0.00 2.57
2746 2891 6.879458 ACTAAAGTTTAGTCCCACATTGCTAG 59.121 38.462 20.34 0.00 0.00 3.42
2747 2892 6.775708 ACTAAAGTTTAGTCCCACATTGCTA 58.224 36.000 20.34 0.00 0.00 3.49
2748 2893 5.631119 ACTAAAGTTTAGTCCCACATTGCT 58.369 37.500 20.34 0.00 0.00 3.91
2749 2894 5.959618 ACTAAAGTTTAGTCCCACATTGC 57.040 39.130 20.34 0.00 0.00 3.56
2750 2895 9.886132 ATACTACTAAAGTTTAGTCCCACATTG 57.114 33.333 27.43 12.97 39.80 2.82
2752 2897 8.702819 GGATACTACTAAAGTTTAGTCCCACAT 58.297 37.037 27.43 16.00 39.80 3.21
2753 2898 7.124750 GGGATACTACTAAAGTTTAGTCCCACA 59.875 40.741 28.46 15.46 40.54 4.17
2754 2899 7.344093 AGGGATACTACTAAAGTTTAGTCCCAC 59.656 40.741 31.64 20.92 41.82 4.61
2755 2900 7.425003 AGGGATACTACTAAAGTTTAGTCCCA 58.575 38.462 31.64 20.25 41.82 4.37
2756 2901 7.911130 AGGGATACTACTAAAGTTTAGTCCC 57.089 40.000 27.26 27.26 40.82 4.46
2757 2902 7.710044 GCAAGGGATACTACTAAAGTTTAGTCC 59.290 40.741 27.43 21.43 39.80 3.85
2758 2903 7.710044 GGCAAGGGATACTACTAAAGTTTAGTC 59.290 40.741 27.43 14.96 39.80 2.59
2759 2904 7.402361 AGGCAAGGGATACTACTAAAGTTTAGT 59.598 37.037 26.93 26.93 39.80 2.24
2760 2905 7.793036 AGGCAAGGGATACTACTAAAGTTTAG 58.207 38.462 19.07 19.07 39.80 1.85
2761 2906 7.744678 AGGCAAGGGATACTACTAAAGTTTA 57.255 36.000 0.00 0.00 39.80 2.01
2762 2907 6.638021 AGGCAAGGGATACTACTAAAGTTT 57.362 37.500 0.00 0.00 39.80 2.66
2763 2908 6.415573 CAAGGCAAGGGATACTACTAAAGTT 58.584 40.000 0.00 0.00 39.80 2.66
2764 2909 5.629366 GCAAGGCAAGGGATACTACTAAAGT 60.629 44.000 0.00 0.00 42.62 2.66
2765 2910 4.816925 GCAAGGCAAGGGATACTACTAAAG 59.183 45.833 0.00 0.00 0.00 1.85
2766 2911 4.226394 TGCAAGGCAAGGGATACTACTAAA 59.774 41.667 0.00 0.00 34.76 1.85
2767 2912 3.778075 TGCAAGGCAAGGGATACTACTAA 59.222 43.478 0.00 0.00 34.76 2.24
2768 2913 3.134081 GTGCAAGGCAAGGGATACTACTA 59.866 47.826 0.00 0.00 41.47 1.82
2769 2914 2.092914 GTGCAAGGCAAGGGATACTACT 60.093 50.000 0.00 0.00 41.47 2.57
2770 2915 2.289565 GTGCAAGGCAAGGGATACTAC 58.710 52.381 0.00 0.00 41.47 2.73
2771 2916 1.912731 TGTGCAAGGCAAGGGATACTA 59.087 47.619 0.00 0.00 41.47 1.82
2772 2917 0.698238 TGTGCAAGGCAAGGGATACT 59.302 50.000 0.00 0.00 41.47 2.12
2773 2918 1.544724 TTGTGCAAGGCAAGGGATAC 58.455 50.000 0.00 0.00 41.47 2.24
2774 2919 2.300956 TTTGTGCAAGGCAAGGGATA 57.699 45.000 0.00 0.00 41.47 2.59
2775 2920 1.276989 CATTTGTGCAAGGCAAGGGAT 59.723 47.619 0.00 0.00 41.47 3.85
2776 2921 0.680618 CATTTGTGCAAGGCAAGGGA 59.319 50.000 0.00 0.00 41.47 4.20
2777 2922 0.320946 CCATTTGTGCAAGGCAAGGG 60.321 55.000 0.00 0.00 41.47 3.95
2778 2923 0.320946 CCCATTTGTGCAAGGCAAGG 60.321 55.000 0.00 0.00 41.47 3.61
2779 2924 0.952010 GCCCATTTGTGCAAGGCAAG 60.952 55.000 8.27 0.00 41.47 4.01
2780 2925 1.071128 GCCCATTTGTGCAAGGCAA 59.929 52.632 8.27 0.00 41.47 4.52
2781 2926 0.541530 TAGCCCATTTGTGCAAGGCA 60.542 50.000 13.63 0.00 46.35 4.75
2782 2927 0.607620 TTAGCCCATTTGTGCAAGGC 59.392 50.000 5.78 5.78 44.20 4.35
2783 2928 1.895131 ACTTAGCCCATTTGTGCAAGG 59.105 47.619 0.00 0.00 0.00 3.61
2784 2929 2.353011 CCACTTAGCCCATTTGTGCAAG 60.353 50.000 0.00 0.00 0.00 4.01
2785 2930 1.617850 CCACTTAGCCCATTTGTGCAA 59.382 47.619 0.00 0.00 0.00 4.08
2786 2931 1.255882 CCACTTAGCCCATTTGTGCA 58.744 50.000 0.00 0.00 0.00 4.57
2787 2932 0.532115 CCCACTTAGCCCATTTGTGC 59.468 55.000 0.00 0.00 0.00 4.57
2788 2933 0.532115 GCCCACTTAGCCCATTTGTG 59.468 55.000 0.00 0.00 0.00 3.33
2789 2934 0.614697 GGCCCACTTAGCCCATTTGT 60.615 55.000 0.00 0.00 45.16 2.83
2790 2935 2.201927 GGCCCACTTAGCCCATTTG 58.798 57.895 0.00 0.00 45.16 2.32
2791 2936 4.785575 GGCCCACTTAGCCCATTT 57.214 55.556 0.00 0.00 45.16 2.32
2797 2942 1.723288 ATCCTAGAGGCCCACTTAGC 58.277 55.000 0.00 0.00 34.44 3.09
2798 2943 6.441088 AATAAATCCTAGAGGCCCACTTAG 57.559 41.667 0.00 0.00 34.44 2.18
2799 2944 6.500751 CCTAATAAATCCTAGAGGCCCACTTA 59.499 42.308 0.00 0.00 34.44 2.24
2800 2945 5.310857 CCTAATAAATCCTAGAGGCCCACTT 59.689 44.000 0.00 0.00 34.44 3.16
2801 2946 4.846940 CCTAATAAATCCTAGAGGCCCACT 59.153 45.833 0.00 1.43 34.44 4.00
2802 2947 4.844655 TCCTAATAAATCCTAGAGGCCCAC 59.155 45.833 0.00 0.00 34.44 4.61
2803 2948 5.101254 TCCTAATAAATCCTAGAGGCCCA 57.899 43.478 0.00 0.00 34.44 5.36
2804 2949 6.644308 ATTCCTAATAAATCCTAGAGGCCC 57.356 41.667 0.00 0.00 34.44 5.80
2805 2950 8.387039 AGAAATTCCTAATAAATCCTAGAGGCC 58.613 37.037 0.00 0.00 34.44 5.19
2806 2951 9.225436 CAGAAATTCCTAATAAATCCTAGAGGC 57.775 37.037 0.00 0.00 34.44 4.70
2821 2966 9.131791 GCCCAATAACTATTTCAGAAATTCCTA 57.868 33.333 13.71 3.88 32.38 2.94
2822 2967 7.841222 AGCCCAATAACTATTTCAGAAATTCCT 59.159 33.333 13.71 1.87 32.38 3.36
2823 2968 8.011844 AGCCCAATAACTATTTCAGAAATTCC 57.988 34.615 13.71 0.00 32.38 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.