Multiple sequence alignment - TraesCS5B01G570500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G570500 chr5B 100.000 3858 0 0 1 3858 712176477 712172620 0.000000e+00 7125
1 TraesCS5B01G570500 chr5B 96.182 1231 41 3 1 1228 672892684 672893911 0.000000e+00 2008
2 TraesCS5B01G570500 chr4B 95.408 2330 100 7 1531 3858 99343092 99345416 0.000000e+00 3703
3 TraesCS5B01G570500 chr4B 94.726 2332 115 8 1531 3858 200720178 200722505 0.000000e+00 3618
4 TraesCS5B01G570500 chr4B 93.704 2335 134 10 1531 3858 553923698 553926026 0.000000e+00 3485
5 TraesCS5B01G570500 chr4B 94.478 1485 68 11 1 1474 200718672 200720153 0.000000e+00 2276
6 TraesCS5B01G570500 chr4B 90.578 329 19 3 1530 1848 212003542 212003868 3.560000e-115 425
7 TraesCS5B01G570500 chr2B 95.250 2337 98 8 1532 3858 732955820 732953487 0.000000e+00 3688
8 TraesCS5B01G570500 chr2B 96.076 1478 54 2 1 1474 732957323 732955846 0.000000e+00 2405
9 TraesCS5B01G570500 chr2B 95.261 1477 65 3 1 1474 693571363 693569889 0.000000e+00 2335
10 TraesCS5B01G570500 chr6B 94.989 2335 101 15 1531 3858 209386971 209389296 0.000000e+00 3650
11 TraesCS5B01G570500 chr6D 94.901 2334 110 5 1531 3858 419878627 419876297 0.000000e+00 3642
12 TraesCS5B01G570500 chr6D 94.608 2337 110 11 1531 3858 97824068 97826397 0.000000e+00 3603
13 TraesCS5B01G570500 chr6D 95.057 1234 54 4 246 1474 419879883 419878652 0.000000e+00 1934
14 TraesCS5B01G570500 chr3D 94.130 2334 123 7 1531 3858 64775988 64778313 0.000000e+00 3539
15 TraesCS5B01G570500 chr3D 94.175 1236 64 6 246 1474 570573220 570574454 0.000000e+00 1877
16 TraesCS5B01G570500 chr1B 92.915 2329 150 11 1531 3856 664474818 664477134 0.000000e+00 3373
17 TraesCS5B01G570500 chr1B 94.019 1488 70 9 1 1474 664473311 664474793 0.000000e+00 2237
18 TraesCS5B01G570500 chr7B 90.982 1985 117 18 1531 3488 92812715 92810766 0.000000e+00 2617
19 TraesCS5B01G570500 chr7B 95.193 1477 63 4 1 1474 92814211 92812740 0.000000e+00 2327
20 TraesCS5B01G570500 chr7B 94.185 1479 79 5 1 1474 682883439 682881963 0.000000e+00 2248
21 TraesCS5B01G570500 chr7B 78.042 337 49 14 1580 1894 194122049 194122382 5.090000e-44 189
22 TraesCS5B01G570500 chr3B 93.425 365 23 1 1 365 714521667 714522030 1.220000e-149 540
23 TraesCS5B01G570500 chr3B 92.603 365 27 0 1 365 657653049 657653413 3.410000e-145 525


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G570500 chr5B 712172620 712176477 3857 True 7125.0 7125 100.0000 1 3858 1 chr5B.!!$R1 3857
1 TraesCS5B01G570500 chr5B 672892684 672893911 1227 False 2008.0 2008 96.1820 1 1228 1 chr5B.!!$F1 1227
2 TraesCS5B01G570500 chr4B 99343092 99345416 2324 False 3703.0 3703 95.4080 1531 3858 1 chr4B.!!$F1 2327
3 TraesCS5B01G570500 chr4B 553923698 553926026 2328 False 3485.0 3485 93.7040 1531 3858 1 chr4B.!!$F3 2327
4 TraesCS5B01G570500 chr4B 200718672 200722505 3833 False 2947.0 3618 94.6020 1 3858 2 chr4B.!!$F4 3857
5 TraesCS5B01G570500 chr2B 732953487 732957323 3836 True 3046.5 3688 95.6630 1 3858 2 chr2B.!!$R2 3857
6 TraesCS5B01G570500 chr2B 693569889 693571363 1474 True 2335.0 2335 95.2610 1 1474 1 chr2B.!!$R1 1473
7 TraesCS5B01G570500 chr6B 209386971 209389296 2325 False 3650.0 3650 94.9890 1531 3858 1 chr6B.!!$F1 2327
8 TraesCS5B01G570500 chr6D 97824068 97826397 2329 False 3603.0 3603 94.6080 1531 3858 1 chr6D.!!$F1 2327
9 TraesCS5B01G570500 chr6D 419876297 419879883 3586 True 2788.0 3642 94.9790 246 3858 2 chr6D.!!$R1 3612
10 TraesCS5B01G570500 chr3D 64775988 64778313 2325 False 3539.0 3539 94.1300 1531 3858 1 chr3D.!!$F1 2327
11 TraesCS5B01G570500 chr3D 570573220 570574454 1234 False 1877.0 1877 94.1750 246 1474 1 chr3D.!!$F2 1228
12 TraesCS5B01G570500 chr1B 664473311 664477134 3823 False 2805.0 3373 93.4670 1 3856 2 chr1B.!!$F1 3855
13 TraesCS5B01G570500 chr7B 92810766 92814211 3445 True 2472.0 2617 93.0875 1 3488 2 chr7B.!!$R2 3487
14 TraesCS5B01G570500 chr7B 682881963 682883439 1476 True 2248.0 2248 94.1850 1 1474 1 chr7B.!!$R1 1473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 857 1.160137 GACACTAGTTGCCCTGCTTG 58.840 55.0 0.0 0.0 0.0 4.01 F
2140 2191 0.975556 TCAACAGCTCGCTATCCCCA 60.976 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2542 2593 1.070786 GAGTCCGTGGCACTTTGGA 59.929 57.895 16.72 12.24 0.0 3.53 R
3691 3777 0.673437 CAAAATGTTGGGCGGACAGT 59.327 50.000 0.00 0.00 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 71 4.038642 TGGTCCACTTGTTTTTATTCTGCC 59.961 41.667 0.00 0.00 0.00 4.85
128 138 7.757526 TGGTTGACAATTTTCCAATATAGTCG 58.242 34.615 0.00 0.00 0.00 4.18
143 153 7.225538 CCAATATAGTCGACTGATTTTTCTGCT 59.774 37.037 28.12 0.00 0.00 4.24
203 214 2.567497 GCTGTGTGCAACCAGGCAT 61.567 57.895 13.93 0.00 46.92 4.40
325 337 1.827789 GCTGTGTGCAACCAGGGAA 60.828 57.895 13.93 0.00 42.31 3.97
424 437 4.009675 TCCCAGTTGCACAAGTTATCATC 58.990 43.478 0.00 0.00 0.00 2.92
698 716 3.552132 TGCACTAGTTGTCTTGGTCAA 57.448 42.857 0.00 0.00 0.00 3.18
839 857 1.160137 GACACTAGTTGCCCTGCTTG 58.840 55.000 0.00 0.00 0.00 4.01
851 869 2.170166 CCCTGCTTGGTTTGCTTGATA 58.830 47.619 0.00 0.00 0.00 2.15
969 989 6.903883 TTGCGGATCTTCTAACTATGTTTC 57.096 37.500 0.00 0.00 0.00 2.78
992 1014 4.777366 CCTTTTCTTGTATTTCCCCCACAT 59.223 41.667 0.00 0.00 0.00 3.21
1032 1054 1.377536 GAGGAGAAGCTGATGGCAAC 58.622 55.000 0.00 0.00 44.79 4.17
1479 1511 2.452505 TGGCACAAGTATTTTAGGGGC 58.547 47.619 0.00 0.00 31.92 5.80
1480 1512 2.042433 TGGCACAAGTATTTTAGGGGCT 59.958 45.455 0.00 0.00 31.92 5.19
1482 1514 3.352648 GCACAAGTATTTTAGGGGCTGA 58.647 45.455 0.00 0.00 0.00 4.26
1485 1517 5.192927 CACAAGTATTTTAGGGGCTGATGA 58.807 41.667 0.00 0.00 0.00 2.92
1486 1518 5.652014 CACAAGTATTTTAGGGGCTGATGAA 59.348 40.000 0.00 0.00 0.00 2.57
1487 1519 6.322201 CACAAGTATTTTAGGGGCTGATGAAT 59.678 38.462 0.00 0.00 0.00 2.57
1488 1520 6.897413 ACAAGTATTTTAGGGGCTGATGAATT 59.103 34.615 0.00 0.00 0.00 2.17
1490 1522 8.352942 CAAGTATTTTAGGGGCTGATGAATTAC 58.647 37.037 0.00 0.00 0.00 1.89
1491 1523 7.582719 AGTATTTTAGGGGCTGATGAATTACA 58.417 34.615 0.00 0.00 0.00 2.41
1493 1525 6.773976 TTTTAGGGGCTGATGAATTACAAG 57.226 37.500 0.00 0.00 0.00 3.16
1494 1526 5.450818 TTAGGGGCTGATGAATTACAAGT 57.549 39.130 0.00 0.00 0.00 3.16
1497 1529 6.018433 AGGGGCTGATGAATTACAAGTATT 57.982 37.500 0.00 0.00 0.00 1.89
1498 1530 6.435164 AGGGGCTGATGAATTACAAGTATTT 58.565 36.000 0.00 0.00 0.00 1.40
1499 1531 7.582719 AGGGGCTGATGAATTACAAGTATTTA 58.417 34.615 0.00 0.00 0.00 1.40
1500 1532 7.721399 AGGGGCTGATGAATTACAAGTATTTAG 59.279 37.037 0.00 0.00 0.00 1.85
1501 1533 7.040409 GGGGCTGATGAATTACAAGTATTTAGG 60.040 40.741 0.00 0.00 0.00 2.69
1502 1534 7.040409 GGGCTGATGAATTACAAGTATTTAGGG 60.040 40.741 0.00 0.00 0.00 3.53
1503 1535 7.040409 GGCTGATGAATTACAAGTATTTAGGGG 60.040 40.741 0.00 0.00 0.00 4.79
1504 1536 7.522236 GCTGATGAATTACAAGTATTTAGGGGC 60.522 40.741 0.00 0.00 0.00 5.80
1505 1537 7.582719 TGATGAATTACAAGTATTTAGGGGCT 58.417 34.615 0.00 0.00 0.00 5.19
1506 1538 7.502226 TGATGAATTACAAGTATTTAGGGGCTG 59.498 37.037 0.00 0.00 0.00 4.85
1507 1539 6.964464 TGAATTACAAGTATTTAGGGGCTGA 58.036 36.000 0.00 0.00 0.00 4.26
1508 1540 7.582719 TGAATTACAAGTATTTAGGGGCTGAT 58.417 34.615 0.00 0.00 0.00 2.90
1509 1541 7.502226 TGAATTACAAGTATTTAGGGGCTGATG 59.498 37.037 0.00 0.00 0.00 3.07
1510 1542 6.569127 TTACAAGTATTTAGGGGCTGATGA 57.431 37.500 0.00 0.00 0.00 2.92
1511 1543 5.450818 ACAAGTATTTAGGGGCTGATGAA 57.549 39.130 0.00 0.00 0.00 2.57
1512 1544 6.018433 ACAAGTATTTAGGGGCTGATGAAT 57.982 37.500 0.00 0.00 0.00 2.57
1513 1545 7.149202 ACAAGTATTTAGGGGCTGATGAATA 57.851 36.000 0.00 0.00 0.00 1.75
1514 1546 7.759607 ACAAGTATTTAGGGGCTGATGAATAT 58.240 34.615 0.00 0.00 0.00 1.28
1515 1547 7.885399 ACAAGTATTTAGGGGCTGATGAATATC 59.115 37.037 0.00 0.00 0.00 1.63
1516 1548 7.574021 AGTATTTAGGGGCTGATGAATATCA 57.426 36.000 0.00 0.00 40.92 2.15
1517 1549 7.988937 AGTATTTAGGGGCTGATGAATATCAA 58.011 34.615 0.00 0.00 42.48 2.57
1518 1550 8.618385 AGTATTTAGGGGCTGATGAATATCAAT 58.382 33.333 0.00 0.00 42.48 2.57
1519 1551 7.713734 ATTTAGGGGCTGATGAATATCAATG 57.286 36.000 0.00 0.00 42.48 2.82
1520 1552 4.736611 AGGGGCTGATGAATATCAATGT 57.263 40.909 0.00 0.00 42.48 2.71
1521 1553 5.070823 AGGGGCTGATGAATATCAATGTT 57.929 39.130 0.00 0.00 42.48 2.71
1522 1554 5.461327 AGGGGCTGATGAATATCAATGTTT 58.539 37.500 0.00 0.00 42.48 2.83
1523 1555 5.537674 AGGGGCTGATGAATATCAATGTTTC 59.462 40.000 0.00 0.00 42.48 2.78
1524 1556 5.537674 GGGGCTGATGAATATCAATGTTTCT 59.462 40.000 0.00 0.00 42.48 2.52
1525 1557 6.041296 GGGGCTGATGAATATCAATGTTTCTT 59.959 38.462 0.00 0.00 42.48 2.52
1526 1558 7.231317 GGGGCTGATGAATATCAATGTTTCTTA 59.769 37.037 0.00 0.00 42.48 2.10
1527 1559 8.295288 GGGCTGATGAATATCAATGTTTCTTAG 58.705 37.037 0.00 0.00 42.48 2.18
1528 1560 8.295288 GGCTGATGAATATCAATGTTTCTTAGG 58.705 37.037 0.00 0.00 42.48 2.69
1529 1561 8.844244 GCTGATGAATATCAATGTTTCTTAGGT 58.156 33.333 0.00 0.00 42.48 3.08
1789 1832 3.784511 ATCATTGCACATCCCCTAGAG 57.215 47.619 0.00 0.00 0.00 2.43
1804 1847 4.020128 CCCCTAGAGCTTTCTGTAGTTGTT 60.020 45.833 0.00 0.00 35.15 2.83
2140 2191 0.975556 TCAACAGCTCGCTATCCCCA 60.976 55.000 0.00 0.00 0.00 4.96
2476 2527 3.370103 GGGGAAGAACGGATGACACATTA 60.370 47.826 0.00 0.00 0.00 1.90
2488 2539 6.238731 CGGATGACACATTATTTATGGCTTGT 60.239 38.462 0.00 0.00 38.64 3.16
2531 2582 4.690719 TAGCACCAACCACGGCCG 62.691 66.667 26.86 26.86 0.00 6.13
2552 2603 0.957888 GAGGCTGAGTCCAAAGTGCC 60.958 60.000 0.00 0.00 40.54 5.01
2580 2631 4.183865 CTCGTGCTAGATCATGAAAACCA 58.816 43.478 0.00 0.00 32.20 3.67
2648 2701 1.131303 TTCCGGAACATGGACCAGGT 61.131 55.000 14.35 5.82 34.56 4.00
2659 2712 1.771854 TGGACCAGGTGAAGCAAACTA 59.228 47.619 0.00 0.00 0.00 2.24
2664 2717 4.215109 ACCAGGTGAAGCAAACTATTTGT 58.785 39.130 0.00 0.00 42.56 2.83
2669 2722 5.049828 GGTGAAGCAAACTATTTGTTGCTT 58.950 37.500 20.20 20.20 45.84 3.91
2719 2773 9.797556 AAAACTAGTACTTCAATGTGTTTTTCC 57.202 29.630 0.00 0.00 34.18 3.13
2758 2812 6.821665 TCATAGTTTCTGAAAAATACCCCTCG 59.178 38.462 4.09 0.00 28.63 4.63
2948 3009 3.252215 CGGCAAATTACAAGTGAGTTCCA 59.748 43.478 0.00 0.00 0.00 3.53
3032 3100 5.060506 TGGTAGGTGCATATACGATTTTGG 58.939 41.667 0.00 0.00 0.00 3.28
3038 3106 4.518970 GTGCATATACGATTTTGGGACCAT 59.481 41.667 0.00 0.00 0.00 3.55
3063 3131 4.497291 TTTGACACTTCCTGGTAGTTGT 57.503 40.909 2.90 5.87 0.00 3.32
3326 3396 3.886505 TGCATTAGTTGTCTTCCCGTTTT 59.113 39.130 0.00 0.00 0.00 2.43
3433 3503 7.704472 CAGTTGCACAAGTTGGTAGAATTTTAA 59.296 33.333 7.96 0.00 0.00 1.52
3657 3743 3.131400 GTGACCTTTTTGGGTGCACTTTA 59.869 43.478 17.98 0.09 40.06 1.85
3663 3749 5.819901 CCTTTTTGGGTGCACTTTATTTTGA 59.180 36.000 17.98 0.00 0.00 2.69
3697 3783 6.540189 AGTTGCATTCATGTAGAATACTGTCC 59.460 38.462 0.00 0.00 45.06 4.02
3730 3817 8.816144 CATTTTGTTGTAGTTGCACAAGTTATT 58.184 29.630 0.00 0.00 39.02 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 71 6.775939 AGTGATGATATCTATTTGCACACG 57.224 37.500 3.98 0.00 0.00 4.49
128 138 5.048434 ACAAAGGCTAGCAGAAAAATCAGTC 60.048 40.000 18.24 0.00 0.00 3.51
143 153 1.065199 CCAGATCCAGCACAAAGGCTA 60.065 52.381 0.00 0.00 43.68 3.93
203 214 2.881513 TGCTAAATTGCACGAACAAGGA 59.118 40.909 0.00 0.00 38.12 3.36
258 269 8.939929 CACATAGACAACAATACTGACAGATTT 58.060 33.333 10.08 0.00 0.00 2.17
325 337 9.723601 ATTGGAACTAATTTGCACAAATAATGT 57.276 25.926 8.92 6.04 45.34 2.71
424 437 4.510038 AACTAAAGGCAACAAGCTCATG 57.490 40.909 0.00 0.00 44.79 3.07
457 470 4.288626 ACTGTGGCAAAGGAATAACTAGGA 59.711 41.667 9.97 0.00 0.00 2.94
839 857 5.807011 CCTAGCACAAAATATCAAGCAAACC 59.193 40.000 0.00 0.00 0.00 3.27
851 869 4.718961 AGACAGACAACCTAGCACAAAAT 58.281 39.130 0.00 0.00 0.00 1.82
969 989 4.156477 TGTGGGGGAAATACAAGAAAAGG 58.844 43.478 0.00 0.00 0.00 3.11
992 1014 9.793259 CTCCTCCTATTATAACCATTTTTAGCA 57.207 33.333 0.00 0.00 0.00 3.49
1032 1054 9.846248 AAAAATGAGAAAAATACATCTCCTTCG 57.154 29.630 0.00 0.00 41.10 3.79
1137 1164 1.056660 GGGACTGACTTCCAGAACCA 58.943 55.000 0.00 0.00 45.78 3.67
1467 1499 7.817418 TGTAATTCATCAGCCCCTAAAATAC 57.183 36.000 0.00 0.00 0.00 1.89
1474 1506 5.653255 ATACTTGTAATTCATCAGCCCCT 57.347 39.130 0.00 0.00 0.00 4.79
1476 1508 7.040409 CCCTAAATACTTGTAATTCATCAGCCC 60.040 40.741 0.00 0.00 0.00 5.19
1477 1509 7.040409 CCCCTAAATACTTGTAATTCATCAGCC 60.040 40.741 0.00 0.00 0.00 4.85
1478 1510 7.522236 GCCCCTAAATACTTGTAATTCATCAGC 60.522 40.741 0.00 0.00 0.00 4.26
1479 1511 7.721399 AGCCCCTAAATACTTGTAATTCATCAG 59.279 37.037 0.00 0.00 0.00 2.90
1480 1512 7.502226 CAGCCCCTAAATACTTGTAATTCATCA 59.498 37.037 0.00 0.00 0.00 3.07
1482 1514 7.582719 TCAGCCCCTAAATACTTGTAATTCAT 58.417 34.615 0.00 0.00 0.00 2.57
1485 1517 7.582719 TCATCAGCCCCTAAATACTTGTAATT 58.417 34.615 0.00 0.00 0.00 1.40
1486 1518 7.149202 TCATCAGCCCCTAAATACTTGTAAT 57.851 36.000 0.00 0.00 0.00 1.89
1487 1519 6.569127 TCATCAGCCCCTAAATACTTGTAA 57.431 37.500 0.00 0.00 0.00 2.41
1488 1520 6.569127 TTCATCAGCCCCTAAATACTTGTA 57.431 37.500 0.00 0.00 0.00 2.41
1490 1522 7.884877 TGATATTCATCAGCCCCTAAATACTTG 59.115 37.037 0.00 0.00 36.22 3.16
1491 1523 7.988937 TGATATTCATCAGCCCCTAAATACTT 58.011 34.615 0.00 0.00 36.22 2.24
1493 1525 8.680903 CATTGATATTCATCAGCCCCTAAATAC 58.319 37.037 0.00 0.00 42.11 1.89
1494 1526 8.393259 ACATTGATATTCATCAGCCCCTAAATA 58.607 33.333 0.00 0.00 42.11 1.40
1497 1529 6.204852 ACATTGATATTCATCAGCCCCTAA 57.795 37.500 0.00 0.00 42.11 2.69
1498 1530 5.848286 ACATTGATATTCATCAGCCCCTA 57.152 39.130 0.00 0.00 42.11 3.53
1499 1531 4.736611 ACATTGATATTCATCAGCCCCT 57.263 40.909 0.00 0.00 42.11 4.79
1500 1532 5.537674 AGAAACATTGATATTCATCAGCCCC 59.462 40.000 0.00 0.00 42.11 5.80
1501 1533 6.645790 AGAAACATTGATATTCATCAGCCC 57.354 37.500 0.00 0.00 42.11 5.19
1502 1534 8.295288 CCTAAGAAACATTGATATTCATCAGCC 58.705 37.037 0.00 0.00 42.11 4.85
1503 1535 8.844244 ACCTAAGAAACATTGATATTCATCAGC 58.156 33.333 0.00 0.00 42.11 4.26
1513 1545 9.349713 TCAACTACAAACCTAAGAAACATTGAT 57.650 29.630 0.00 0.00 0.00 2.57
1514 1546 8.617809 GTCAACTACAAACCTAAGAAACATTGA 58.382 33.333 0.00 0.00 0.00 2.57
1515 1547 8.402472 TGTCAACTACAAACCTAAGAAACATTG 58.598 33.333 0.00 0.00 34.29 2.82
1516 1548 8.514330 TGTCAACTACAAACCTAAGAAACATT 57.486 30.769 0.00 0.00 34.29 2.71
1517 1549 8.691661 ATGTCAACTACAAACCTAAGAAACAT 57.308 30.769 0.00 0.00 42.70 2.71
1518 1550 7.771361 TGATGTCAACTACAAACCTAAGAAACA 59.229 33.333 0.00 0.00 42.70 2.83
1519 1551 8.068380 GTGATGTCAACTACAAACCTAAGAAAC 58.932 37.037 0.00 0.00 42.70 2.78
1520 1552 7.990886 AGTGATGTCAACTACAAACCTAAGAAA 59.009 33.333 0.00 0.00 42.70 2.52
1521 1553 7.441157 CAGTGATGTCAACTACAAACCTAAGAA 59.559 37.037 0.00 0.00 42.70 2.52
1522 1554 6.929049 CAGTGATGTCAACTACAAACCTAAGA 59.071 38.462 0.00 0.00 42.70 2.10
1523 1555 6.147821 CCAGTGATGTCAACTACAAACCTAAG 59.852 42.308 0.00 0.00 42.70 2.18
1524 1556 5.995282 CCAGTGATGTCAACTACAAACCTAA 59.005 40.000 0.00 0.00 42.70 2.69
1525 1557 5.071250 ACCAGTGATGTCAACTACAAACCTA 59.929 40.000 0.00 0.00 42.70 3.08
1526 1558 4.141482 ACCAGTGATGTCAACTACAAACCT 60.141 41.667 0.00 0.00 42.70 3.50
1527 1559 4.134563 ACCAGTGATGTCAACTACAAACC 58.865 43.478 0.00 0.00 42.70 3.27
1528 1560 4.814234 TGACCAGTGATGTCAACTACAAAC 59.186 41.667 0.27 0.00 42.70 2.93
1529 1561 5.029807 TGACCAGTGATGTCAACTACAAA 57.970 39.130 0.27 0.00 42.70 2.83
1740 1783 7.341256 AGCATGATGTTGGAAAGAAGATAACAT 59.659 33.333 0.00 0.00 42.68 2.71
1789 1832 6.689554 ACTAGACCTAACAACTACAGAAAGC 58.310 40.000 0.00 0.00 0.00 3.51
2078 2129 1.315981 GCCCTTAACCTGCCAGCTTC 61.316 60.000 0.00 0.00 0.00 3.86
2140 2191 2.883026 ACTAGCTCTGACTTCTGTGGT 58.117 47.619 0.00 0.00 0.00 4.16
2476 2527 2.446435 ACCGCAAGACAAGCCATAAAT 58.554 42.857 0.00 0.00 43.02 1.40
2505 2556 3.211045 GTGGTTGGTGCTAAGAAAGTGA 58.789 45.455 0.00 0.00 0.00 3.41
2531 2582 1.517242 CACTTTGGACTCAGCCTCAC 58.483 55.000 0.00 0.00 0.00 3.51
2542 2593 1.070786 GAGTCCGTGGCACTTTGGA 59.929 57.895 16.72 12.24 0.00 3.53
2580 2631 5.779529 AAAGCAGATGTTCATGTTCTTGT 57.220 34.783 0.00 0.00 0.00 3.16
2659 2712 7.275888 TCAAGTGATACAAGAAGCAACAAAT 57.724 32.000 0.00 0.00 0.00 2.32
2664 2717 5.181811 CACCATCAAGTGATACAAGAAGCAA 59.818 40.000 0.00 0.00 40.34 3.91
2669 2722 5.245977 TCACTCACCATCAAGTGATACAAGA 59.754 40.000 1.26 0.00 45.18 3.02
2719 2773 6.854892 CAGAAACTATGACTGCACAAAAAGAG 59.145 38.462 0.00 0.00 0.00 2.85
2885 2940 2.978978 TGTCCTTCTTGATCACCTTGGA 59.021 45.455 0.00 0.00 0.00 3.53
3032 3100 4.022849 CAGGAAGTGTCAAAAAGATGGTCC 60.023 45.833 0.00 0.00 0.00 4.46
3038 3106 5.367945 ACTACCAGGAAGTGTCAAAAAGA 57.632 39.130 0.00 0.00 0.00 2.52
3094 3162 1.140852 ACAAGCTGTGCAACTACAGGA 59.859 47.619 7.87 0.00 46.32 3.86
3141 3209 9.463443 GATAAGTAAAACTGTGCAACTTGAAAT 57.537 29.630 7.74 0.00 38.04 2.17
3433 3503 3.131396 CAACTGCCGAAAAGTGTCTACT 58.869 45.455 0.00 0.00 39.32 2.57
3489 3572 5.881447 AGAGCTACAAGATGTACAACTACG 58.119 41.667 6.02 3.77 0.00 3.51
3691 3777 0.673437 CAAAATGTTGGGCGGACAGT 59.327 50.000 0.00 0.00 0.00 3.55
3789 3876 7.094032 CCTCTTTAAGCTGATGTGAAAAAGGAT 60.094 37.037 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.