Multiple sequence alignment - TraesCS5B01G569800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G569800 chr5B 100.000 5954 0 0 1 5954 711929402 711935355 0.000000e+00 10996.0
1 TraesCS5B01G569800 chr5B 89.252 2540 247 15 1417 3941 711962260 711964788 0.000000e+00 3155.0
2 TraesCS5B01G569800 chr5B 88.117 2533 258 26 1443 3940 711413479 711410955 0.000000e+00 2970.0
3 TraesCS5B01G569800 chr5B 87.353 2546 266 27 1436 3940 711353498 711350968 0.000000e+00 2867.0
4 TraesCS5B01G569800 chr5B 84.074 1237 145 24 3838 5044 711738204 711739418 0.000000e+00 1146.0
5 TraesCS5B01G569800 chr5B 84.707 1177 108 30 3943 5085 711350899 711349761 0.000000e+00 1110.0
6 TraesCS5B01G569800 chr5B 82.995 1282 140 29 3948 5172 711333111 711331851 0.000000e+00 1088.0
7 TraesCS5B01G569800 chr5B 83.739 781 84 15 4217 4962 711406810 711406038 0.000000e+00 699.0
8 TraesCS5B01G569800 chr5B 91.860 344 26 2 967 1308 712206707 712207050 4.170000e-131 479.0
9 TraesCS5B01G569800 chr5B 92.236 322 25 0 987 1308 711354091 711353770 1.960000e-124 457.0
10 TraesCS5B01G569800 chr5B 82.058 379 45 12 951 1308 711735182 711735558 9.700000e-78 302.0
11 TraesCS5B01G569800 chr5B 83.224 304 22 8 5224 5502 711405842 711405543 9.910000e-63 252.0
12 TraesCS5B01G569800 chr5B 89.017 173 16 2 5224 5396 711349702 711349533 1.680000e-50 211.0
13 TraesCS5B01G569800 chr5B 90.435 115 4 5 5396 5504 711331751 711331638 1.730000e-30 145.0
14 TraesCS5B01G569800 chr5B 79.365 189 18 9 5535 5714 711349457 711349281 4.880000e-21 113.0
15 TraesCS5B01G569800 chr5B 84.762 105 11 2 5710 5813 711349246 711349146 3.800000e-17 100.0
16 TraesCS5B01G569800 chr5B 90.789 76 3 1 170 245 711960282 711960353 1.370000e-16 99.0
17 TraesCS5B01G569800 chr5B 88.889 81 4 1 5110 5185 711739428 711739508 1.770000e-15 95.3
18 TraesCS5B01G569800 chr5B 97.619 42 0 1 5674 5714 711331539 711331498 2.980000e-08 71.3
19 TraesCS5B01G569800 chr5B 97.619 42 0 1 5031 5072 711405972 711405932 2.980000e-08 71.3
20 TraesCS5B01G569800 chr5B 89.286 56 3 1 5342 5394 711331837 711331782 3.850000e-07 67.6
21 TraesCS5B01G569800 chr5D 88.120 4394 369 52 967 5260 561895890 561900230 0.000000e+00 5081.0
22 TraesCS5B01G569800 chr5D 85.929 3795 382 64 1426 5089 561644665 561640892 0.000000e+00 3910.0
23 TraesCS5B01G569800 chr5D 85.860 3034 330 37 984 3940 556541099 556538088 0.000000e+00 3134.0
24 TraesCS5B01G569800 chr5D 88.258 2606 236 26 1397 3943 561923648 561926242 0.000000e+00 3053.0
25 TraesCS5B01G569800 chr5D 89.130 1932 165 26 1436 3328 552860733 552858808 0.000000e+00 2362.0
26 TraesCS5B01G569800 chr5D 83.758 1256 145 32 3943 5157 561926308 561927545 0.000000e+00 1134.0
27 TraesCS5B01G569800 chr5D 85.392 1020 101 22 3961 4950 551882027 551883028 0.000000e+00 1014.0
28 TraesCS5B01G569800 chr5D 84.023 1039 125 15 3943 4962 552858046 552857030 0.000000e+00 961.0
29 TraesCS5B01G569800 chr5D 85.227 352 42 7 956 1306 561645361 561645019 2.640000e-93 353.0
30 TraesCS5B01G569800 chr5D 83.616 354 53 5 958 1308 561923103 561923454 1.600000e-85 327.0
31 TraesCS5B01G569800 chr5D 84.762 315 43 3 998 1308 552861279 552860966 1.610000e-80 311.0
32 TraesCS5B01G569800 chr5D 86.034 179 17 4 5224 5395 552856934 552856757 1.020000e-42 185.0
33 TraesCS5B01G569800 chr5D 86.614 127 11 4 5711 5836 552856435 552856314 1.040000e-27 135.0
34 TraesCS5B01G569800 chr5D 79.204 226 20 12 5394 5618 551883189 551883388 1.350000e-26 132.0
35 TraesCS5B01G569800 chr5D 90.000 80 4 2 5426 5504 561927686 561927762 3.800000e-17 100.0
36 TraesCS5B01G569800 chr5D 97.917 48 1 0 5662 5709 561927854 561927901 3.820000e-12 84.2
37 TraesCS5B01G569800 chr7B 87.709 3531 331 46 1497 4950 1305134 1308638 0.000000e+00 4021.0
38 TraesCS5B01G569800 chr7B 89.834 3020 235 27 984 3943 891037 888030 0.000000e+00 3810.0
39 TraesCS5B01G569800 chr7B 88.630 2533 222 34 1436 3941 1037016 1034523 0.000000e+00 3022.0
40 TraesCS5B01G569800 chr7B 88.463 2531 253 17 1436 3934 1348532 1351055 0.000000e+00 3020.0
41 TraesCS5B01G569800 chr7B 89.150 1954 162 28 1434 3344 834652 832706 0.000000e+00 2388.0
42 TraesCS5B01G569800 chr7B 87.741 1607 147 23 2705 4300 1103112 1101545 0.000000e+00 1831.0
43 TraesCS5B01G569800 chr7B 82.085 1602 139 60 3961 5484 887946 886415 0.000000e+00 1232.0
44 TraesCS5B01G569800 chr7B 82.863 1488 132 53 3961 5395 883475 882058 0.000000e+00 1221.0
45 TraesCS5B01G569800 chr7B 81.561 1307 130 43 3943 5206 849224 850462 0.000000e+00 976.0
46 TraesCS5B01G569800 chr7B 84.333 1034 118 21 3948 4950 1351135 1352155 0.000000e+00 972.0
47 TraesCS5B01G569800 chr7B 83.586 1054 103 22 4115 5126 1034259 1033234 0.000000e+00 924.0
48 TraesCS5B01G569800 chr7B 84.981 799 89 19 3943 4718 832088 831298 0.000000e+00 782.0
49 TraesCS5B01G569800 chr7B 81.156 467 26 25 5275 5714 1033041 1032610 9.630000e-83 318.0
50 TraesCS5B01G569800 chr7B 80.430 419 37 21 5394 5798 829716 829329 1.630000e-70 278.0
51 TraesCS5B01G569800 chr7B 88.387 155 13 4 5710 5860 1032560 1032407 1.320000e-41 182.0
52 TraesCS5B01G569800 chr7B 93.913 115 6 1 5601 5714 850571 850685 7.930000e-39 172.0
53 TraesCS5B01G569800 chr7B 92.632 95 4 3 22 116 806615 806524 3.740000e-27 134.0
54 TraesCS5B01G569800 chr7B 85.859 99 4 3 5617 5714 1099720 1099631 4.910000e-16 97.1
55 TraesCS5B01G569800 chr7B 93.651 63 4 0 319 381 838241 838179 1.770000e-15 95.3
56 TraesCS5B01G569800 chr7B 90.667 75 1 3 5760 5833 1308761 1308830 1.770000e-15 95.3
57 TraesCS5B01G569800 chr7B 90.667 75 1 3 5760 5833 1352281 1352350 1.770000e-15 95.3
58 TraesCS5B01G569800 chr7B 93.333 60 1 1 112 171 806499 806443 1.060000e-12 86.1
59 TraesCS5B01G569800 chr7B 97.619 42 1 0 5083 5124 830298 830257 8.280000e-09 73.1
60 TraesCS5B01G569800 chr4B 87.960 2525 275 15 1436 3941 656879458 656881972 0.000000e+00 2952.0
61 TraesCS5B01G569800 chr4B 84.279 846 96 17 4126 4948 656881998 656882829 0.000000e+00 791.0
62 TraesCS5B01G569800 chr4D 87.935 2528 270 18 1436 3941 509854566 509852052 0.000000e+00 2946.0
63 TraesCS5B01G569800 chr4D 84.279 846 96 19 4126 4948 509852026 509851195 0.000000e+00 791.0
64 TraesCS5B01G569800 chr1D 88.623 1169 93 13 1205 2355 438371949 438373095 0.000000e+00 1386.0
65 TraesCS5B01G569800 chr5A 84.752 846 91 19 4126 4948 698689576 698688746 0.000000e+00 813.0
66 TraesCS5B01G569800 chr1B 87.844 617 68 3 984 1597 594144424 594145036 0.000000e+00 717.0
67 TraesCS5B01G569800 chr1A 89.529 573 45 9 1057 1627 535065705 535066264 0.000000e+00 712.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G569800 chr5B 711929402 711935355 5953 False 10996.000000 10996 100.000000 1 5954 1 chr5B.!!$F1 5953
1 TraesCS5B01G569800 chr5B 711410955 711413479 2524 True 2970.000000 2970 88.117000 1443 3940 1 chr5B.!!$R1 2497
2 TraesCS5B01G569800 chr5B 711960282 711964788 4506 False 1627.000000 3155 90.020500 170 3941 2 chr5B.!!$F4 3771
3 TraesCS5B01G569800 chr5B 711349146 711354091 4945 True 809.666667 2867 86.240000 987 5813 6 chr5B.!!$R3 4826
4 TraesCS5B01G569800 chr5B 711735182 711739508 4326 False 514.433333 1146 85.007000 951 5185 3 chr5B.!!$F3 4234
5 TraesCS5B01G569800 chr5B 711331498 711333111 1613 True 342.975000 1088 90.083750 3948 5714 4 chr5B.!!$R2 1766
6 TraesCS5B01G569800 chr5B 711405543 711406810 1267 True 340.766667 699 88.194000 4217 5502 3 chr5B.!!$R4 1285
7 TraesCS5B01G569800 chr5D 561895890 561900230 4340 False 5081.000000 5081 88.120000 967 5260 1 chr5D.!!$F1 4293
8 TraesCS5B01G569800 chr5D 556538088 556541099 3011 True 3134.000000 3134 85.860000 984 3940 1 chr5D.!!$R1 2956
9 TraesCS5B01G569800 chr5D 561640892 561645361 4469 True 2131.500000 3910 85.578000 956 5089 2 chr5D.!!$R3 4133
10 TraesCS5B01G569800 chr5D 561923103 561927901 4798 False 939.640000 3053 88.709800 958 5709 5 chr5D.!!$F3 4751
11 TraesCS5B01G569800 chr5D 552856314 552861279 4965 True 790.800000 2362 86.112600 998 5836 5 chr5D.!!$R2 4838
12 TraesCS5B01G569800 chr5D 551882027 551883388 1361 False 573.000000 1014 82.298000 3961 5618 2 chr5D.!!$F2 1657
13 TraesCS5B01G569800 chr7B 882058 891037 8979 True 2087.666667 3810 84.927333 984 5484 3 chr7B.!!$R3 4500
14 TraesCS5B01G569800 chr7B 1305134 1308830 3696 False 2058.150000 4021 89.188000 1497 5833 2 chr7B.!!$F2 4336
15 TraesCS5B01G569800 chr7B 1348532 1352350 3818 False 1362.433333 3020 87.821000 1436 5833 3 chr7B.!!$F3 4397
16 TraesCS5B01G569800 chr7B 1032407 1037016 4609 True 1111.500000 3022 85.439750 1436 5860 4 chr7B.!!$R4 4424
17 TraesCS5B01G569800 chr7B 1099631 1103112 3481 True 964.050000 1831 86.800000 2705 5714 2 chr7B.!!$R5 3009
18 TraesCS5B01G569800 chr7B 829329 838241 8912 True 723.280000 2388 89.166200 319 5798 5 chr7B.!!$R2 5479
19 TraesCS5B01G569800 chr7B 849224 850685 1461 False 574.000000 976 87.737000 3943 5714 2 chr7B.!!$F1 1771
20 TraesCS5B01G569800 chr4B 656879458 656882829 3371 False 1871.500000 2952 86.119500 1436 4948 2 chr4B.!!$F1 3512
21 TraesCS5B01G569800 chr4D 509851195 509854566 3371 True 1868.500000 2946 86.107000 1436 4948 2 chr4D.!!$R1 3512
22 TraesCS5B01G569800 chr1D 438371949 438373095 1146 False 1386.000000 1386 88.623000 1205 2355 1 chr1D.!!$F1 1150
23 TraesCS5B01G569800 chr5A 698688746 698689576 830 True 813.000000 813 84.752000 4126 4948 1 chr5A.!!$R1 822
24 TraesCS5B01G569800 chr1B 594144424 594145036 612 False 717.000000 717 87.844000 984 1597 1 chr1B.!!$F1 613
25 TraesCS5B01G569800 chr1A 535065705 535066264 559 False 712.000000 712 89.529000 1057 1627 1 chr1A.!!$F1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 1525 0.033504 TTTGTGTGGAGGACGAGAGC 59.966 55.0 0.00 0.00 0.00 4.09 F
872 2147 0.179059 TTTCTTGCAGTGCAGACGGA 60.179 50.0 18.81 12.15 40.61 4.69 F
909 3797 0.387622 CCGCCACATTTCTTGCAGTG 60.388 55.0 0.00 0.00 0.00 3.66 F
949 3837 0.462047 CCCGAATCCACCACTAGCAC 60.462 60.0 0.00 0.00 0.00 4.40 F
1788 5206 0.689055 ATGTGCTGAAGCTCACCAGA 59.311 50.0 9.07 0.00 45.57 3.86 F
2647 6158 0.535328 CAGAGCTGATGCCATCCCAG 60.535 60.0 1.49 0.00 40.80 4.45 F
3025 6569 1.808411 TGGTCGTTCTGATTTGCCTC 58.192 50.0 0.00 0.00 0.00 4.70 F
4296 8101 0.615331 TGTTCTCTCAGTGGCCCATC 59.385 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2156 5601 1.255882 TTTTCGTGCAATCCCAGCAT 58.744 45.000 0.00 0.0 44.79 3.79 R
2425 5873 2.171003 GCCTATTGCAACCCAGAACTT 58.829 47.619 0.00 0.0 40.77 2.66 R
2527 6020 2.172505 ACTCGCATTGATCACCCCAATA 59.827 45.455 0.00 0.0 33.35 1.90 R
2571 6082 4.737765 GCAGAAACACTCTTAGATAGCTCG 59.262 45.833 0.00 0.0 29.07 5.03 R
3298 6842 0.833949 GGTCCATCTCTTCCCCAGAC 59.166 60.000 0.00 0.0 0.00 3.51 R
3901 7577 0.779997 AGATTGTGGGAGGCCAAAGT 59.220 50.000 5.01 0.0 0.00 2.66 R
4656 8536 0.253044 TGAAGCTTTCCATCCTCCCG 59.747 55.000 0.00 0.0 0.00 5.14 R
5820 11079 0.109412 GCAGCAGCATCCTGTCAAAC 60.109 55.000 0.00 0.0 41.26 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.440409 TCTGCTTCCTGCTGAAAATCC 58.560 47.619 0.00 0.00 44.69 3.01
28 29 2.040813 TCTGCTTCCTGCTGAAAATCCT 59.959 45.455 0.00 0.00 44.69 3.24
29 30 2.422832 CTGCTTCCTGCTGAAAATCCTC 59.577 50.000 0.00 0.00 42.27 3.71
30 31 2.040813 TGCTTCCTGCTGAAAATCCTCT 59.959 45.455 0.00 0.00 43.37 3.69
31 32 2.422832 GCTTCCTGCTGAAAATCCTCTG 59.577 50.000 0.00 0.00 38.95 3.35
32 33 3.683802 CTTCCTGCTGAAAATCCTCTGT 58.316 45.455 0.00 0.00 31.06 3.41
33 34 3.795688 TCCTGCTGAAAATCCTCTGTT 57.204 42.857 0.00 0.00 0.00 3.16
34 35 4.104383 TCCTGCTGAAAATCCTCTGTTT 57.896 40.909 0.00 0.00 0.00 2.83
35 36 4.074970 TCCTGCTGAAAATCCTCTGTTTC 58.925 43.478 0.00 0.00 34.88 2.78
36 37 4.077822 CCTGCTGAAAATCCTCTGTTTCT 58.922 43.478 0.00 0.00 35.26 2.52
37 38 4.155644 CCTGCTGAAAATCCTCTGTTTCTC 59.844 45.833 0.00 0.00 35.26 2.87
38 39 4.717877 TGCTGAAAATCCTCTGTTTCTCA 58.282 39.130 0.00 0.00 35.26 3.27
39 40 4.758674 TGCTGAAAATCCTCTGTTTCTCAG 59.241 41.667 0.00 0.00 44.85 3.35
41 42 5.106752 GCTGAAAATCCTCTGTTTCTCAGAC 60.107 44.000 0.00 0.00 46.77 3.51
42 43 5.928976 TGAAAATCCTCTGTTTCTCAGACA 58.071 37.500 0.00 0.00 46.77 3.41
43 44 6.356556 TGAAAATCCTCTGTTTCTCAGACAA 58.643 36.000 0.00 0.00 46.77 3.18
44 45 6.828273 TGAAAATCCTCTGTTTCTCAGACAAA 59.172 34.615 0.00 0.00 46.77 2.83
45 46 7.503566 TGAAAATCCTCTGTTTCTCAGACAAAT 59.496 33.333 0.00 0.00 46.77 2.32
46 47 8.924511 AAAATCCTCTGTTTCTCAGACAAATA 57.075 30.769 0.00 0.00 46.77 1.40
47 48 9.525826 AAAATCCTCTGTTTCTCAGACAAATAT 57.474 29.630 0.00 0.00 46.77 1.28
48 49 8.503458 AATCCTCTGTTTCTCAGACAAATATG 57.497 34.615 0.00 0.00 46.77 1.78
49 50 5.877012 TCCTCTGTTTCTCAGACAAATATGC 59.123 40.000 0.00 0.00 46.77 3.14
50 51 5.645067 CCTCTGTTTCTCAGACAAATATGCA 59.355 40.000 0.00 0.00 46.77 3.96
51 52 6.402983 CCTCTGTTTCTCAGACAAATATGCAC 60.403 42.308 0.00 0.00 46.77 4.57
52 53 5.997129 TCTGTTTCTCAGACAAATATGCACA 59.003 36.000 0.00 0.00 46.77 4.57
53 54 6.656270 TCTGTTTCTCAGACAAATATGCACAT 59.344 34.615 0.00 0.00 46.77 3.21
54 55 7.823799 TCTGTTTCTCAGACAAATATGCACATA 59.176 33.333 0.00 0.00 46.77 2.29
55 56 8.510243 TGTTTCTCAGACAAATATGCACATAT 57.490 30.769 0.00 0.00 35.63 1.78
56 57 9.612066 TGTTTCTCAGACAAATATGCACATATA 57.388 29.630 3.65 0.00 33.86 0.86
57 58 9.869844 GTTTCTCAGACAAATATGCACATATAC 57.130 33.333 3.65 0.00 33.86 1.47
58 59 9.836864 TTTCTCAGACAAATATGCACATATACT 57.163 29.630 3.65 0.41 33.86 2.12
60 61 9.914131 TCTCAGACAAATATGCACATATACTAC 57.086 33.333 3.65 0.00 33.86 2.73
61 62 9.920133 CTCAGACAAATATGCACATATACTACT 57.080 33.333 3.65 0.70 33.86 2.57
69 70 6.968131 ATGCACATATACTACTAATTGCCG 57.032 37.500 0.00 0.00 0.00 5.69
70 71 6.091718 TGCACATATACTACTAATTGCCGA 57.908 37.500 0.00 0.00 0.00 5.54
71 72 6.697395 TGCACATATACTACTAATTGCCGAT 58.303 36.000 0.00 0.00 0.00 4.18
72 73 7.832769 TGCACATATACTACTAATTGCCGATA 58.167 34.615 0.00 0.00 0.00 2.92
73 74 7.973944 TGCACATATACTACTAATTGCCGATAG 59.026 37.037 0.00 0.00 0.00 2.08
89 90 4.882671 CGATAGGACACCCTTCATTTTG 57.117 45.455 0.00 0.00 40.78 2.44
90 91 4.261801 CGATAGGACACCCTTCATTTTGT 58.738 43.478 0.00 0.00 40.78 2.83
91 92 4.700213 CGATAGGACACCCTTCATTTTGTT 59.300 41.667 0.00 0.00 40.78 2.83
92 93 5.391950 CGATAGGACACCCTTCATTTTGTTG 60.392 44.000 0.00 0.00 40.78 3.33
93 94 3.642141 AGGACACCCTTCATTTTGTTGT 58.358 40.909 0.00 0.00 40.78 3.32
94 95 4.030216 AGGACACCCTTCATTTTGTTGTT 58.970 39.130 0.00 0.00 40.78 2.83
95 96 4.469586 AGGACACCCTTCATTTTGTTGTTT 59.530 37.500 0.00 0.00 40.78 2.83
96 97 4.570369 GGACACCCTTCATTTTGTTGTTTG 59.430 41.667 0.00 0.00 0.00 2.93
97 98 4.512484 ACACCCTTCATTTTGTTGTTTGG 58.488 39.130 0.00 0.00 0.00 3.28
98 99 3.312146 CACCCTTCATTTTGTTGTTTGGC 59.688 43.478 0.00 0.00 0.00 4.52
99 100 3.054802 ACCCTTCATTTTGTTGTTTGGCA 60.055 39.130 0.00 0.00 0.00 4.92
100 101 3.560896 CCCTTCATTTTGTTGTTTGGCAG 59.439 43.478 0.00 0.00 0.00 4.85
101 102 4.190772 CCTTCATTTTGTTGTTTGGCAGT 58.809 39.130 0.00 0.00 0.00 4.40
102 103 4.034279 CCTTCATTTTGTTGTTTGGCAGTG 59.966 41.667 0.00 0.00 0.00 3.66
103 104 4.462508 TCATTTTGTTGTTTGGCAGTGA 57.537 36.364 0.00 0.00 0.00 3.41
104 105 4.180057 TCATTTTGTTGTTTGGCAGTGAC 58.820 39.130 0.00 0.00 0.00 3.67
105 106 2.270275 TTTGTTGTTTGGCAGTGACG 57.730 45.000 0.00 0.00 0.00 4.35
106 107 1.454201 TTGTTGTTTGGCAGTGACGA 58.546 45.000 0.00 0.00 0.00 4.20
107 108 1.674359 TGTTGTTTGGCAGTGACGAT 58.326 45.000 0.00 0.00 0.00 3.73
108 109 1.333308 TGTTGTTTGGCAGTGACGATG 59.667 47.619 0.00 0.00 0.00 3.84
109 110 1.333619 GTTGTTTGGCAGTGACGATGT 59.666 47.619 0.00 0.00 0.00 3.06
110 111 0.943673 TGTTTGGCAGTGACGATGTG 59.056 50.000 0.00 0.00 0.00 3.21
111 112 1.225855 GTTTGGCAGTGACGATGTGA 58.774 50.000 0.00 0.00 0.00 3.58
112 113 1.806542 GTTTGGCAGTGACGATGTGAT 59.193 47.619 0.00 0.00 0.00 3.06
113 114 1.725641 TTGGCAGTGACGATGTGATC 58.274 50.000 0.00 0.00 0.00 2.92
114 115 0.897621 TGGCAGTGACGATGTGATCT 59.102 50.000 0.00 0.00 0.00 2.75
115 116 1.276138 TGGCAGTGACGATGTGATCTT 59.724 47.619 0.00 0.00 0.00 2.40
116 117 1.929836 GGCAGTGACGATGTGATCTTC 59.070 52.381 0.00 0.00 0.00 2.87
117 118 1.929836 GCAGTGACGATGTGATCTTCC 59.070 52.381 0.00 0.00 0.00 3.46
118 119 2.417924 GCAGTGACGATGTGATCTTCCT 60.418 50.000 0.00 0.00 0.00 3.36
119 120 3.854666 CAGTGACGATGTGATCTTCCTT 58.145 45.455 0.00 0.00 0.00 3.36
120 121 3.615937 CAGTGACGATGTGATCTTCCTTG 59.384 47.826 0.00 0.00 0.00 3.61
121 122 2.932614 GTGACGATGTGATCTTCCTTGG 59.067 50.000 0.00 0.00 0.00 3.61
122 123 1.936547 GACGATGTGATCTTCCTTGGC 59.063 52.381 0.00 0.00 0.00 4.52
123 124 1.556911 ACGATGTGATCTTCCTTGGCT 59.443 47.619 0.00 0.00 0.00 4.75
124 125 1.938577 CGATGTGATCTTCCTTGGCTG 59.061 52.381 0.00 0.00 0.00 4.85
125 126 2.679059 CGATGTGATCTTCCTTGGCTGT 60.679 50.000 0.00 0.00 0.00 4.40
126 127 2.479566 TGTGATCTTCCTTGGCTGTC 57.520 50.000 0.00 0.00 0.00 3.51
127 128 1.003580 TGTGATCTTCCTTGGCTGTCC 59.996 52.381 0.00 0.00 0.00 4.02
128 129 1.003580 GTGATCTTCCTTGGCTGTCCA 59.996 52.381 0.00 0.00 41.55 4.02
136 137 3.419793 TTGGCTGTCCAAGTCCAAG 57.580 52.632 0.35 0.00 46.89 3.61
137 138 0.550914 TTGGCTGTCCAAGTCCAAGT 59.449 50.000 0.35 0.00 46.89 3.16
138 139 1.429930 TGGCTGTCCAAGTCCAAGTA 58.570 50.000 0.00 0.00 39.99 2.24
139 140 1.071699 TGGCTGTCCAAGTCCAAGTAC 59.928 52.381 0.00 0.00 39.99 2.73
140 141 1.348036 GGCTGTCCAAGTCCAAGTACT 59.652 52.381 0.00 0.00 0.00 2.73
141 142 2.565834 GGCTGTCCAAGTCCAAGTACTA 59.434 50.000 0.00 0.00 0.00 1.82
142 143 3.586892 GCTGTCCAAGTCCAAGTACTAC 58.413 50.000 0.00 0.00 0.00 2.73
143 144 3.616802 GCTGTCCAAGTCCAAGTACTACC 60.617 52.174 0.00 0.00 0.00 3.18
144 145 3.833070 CTGTCCAAGTCCAAGTACTACCT 59.167 47.826 0.00 0.00 0.00 3.08
145 146 3.830755 TGTCCAAGTCCAAGTACTACCTC 59.169 47.826 0.00 0.00 0.00 3.85
146 147 4.087907 GTCCAAGTCCAAGTACTACCTCT 58.912 47.826 0.00 0.00 0.00 3.69
147 148 5.222192 TGTCCAAGTCCAAGTACTACCTCTA 60.222 44.000 0.00 0.00 0.00 2.43
148 149 5.713861 GTCCAAGTCCAAGTACTACCTCTAA 59.286 44.000 0.00 0.00 0.00 2.10
149 150 6.210185 GTCCAAGTCCAAGTACTACCTCTAAA 59.790 42.308 0.00 0.00 0.00 1.85
150 151 6.958192 TCCAAGTCCAAGTACTACCTCTAAAT 59.042 38.462 0.00 0.00 0.00 1.40
151 152 7.123847 TCCAAGTCCAAGTACTACCTCTAAATC 59.876 40.741 0.00 0.00 0.00 2.17
152 153 7.124448 CCAAGTCCAAGTACTACCTCTAAATCT 59.876 40.741 0.00 0.00 0.00 2.40
153 154 7.885009 AGTCCAAGTACTACCTCTAAATCTC 57.115 40.000 0.00 0.00 0.00 2.75
154 155 7.411808 AGTCCAAGTACTACCTCTAAATCTCA 58.588 38.462 0.00 0.00 0.00 3.27
155 156 8.062536 AGTCCAAGTACTACCTCTAAATCTCAT 58.937 37.037 0.00 0.00 0.00 2.90
156 157 9.352191 GTCCAAGTACTACCTCTAAATCTCATA 57.648 37.037 0.00 0.00 0.00 2.15
157 158 9.352191 TCCAAGTACTACCTCTAAATCTCATAC 57.648 37.037 0.00 0.00 0.00 2.39
158 159 8.578151 CCAAGTACTACCTCTAAATCTCATACC 58.422 40.741 0.00 0.00 0.00 2.73
159 160 9.357161 CAAGTACTACCTCTAAATCTCATACCT 57.643 37.037 0.00 0.00 0.00 3.08
160 161 8.927675 AGTACTACCTCTAAATCTCATACCTG 57.072 38.462 0.00 0.00 0.00 4.00
161 162 6.658188 ACTACCTCTAAATCTCATACCTGC 57.342 41.667 0.00 0.00 0.00 4.85
162 163 6.136857 ACTACCTCTAAATCTCATACCTGCA 58.863 40.000 0.00 0.00 0.00 4.41
163 164 5.543507 ACCTCTAAATCTCATACCTGCAG 57.456 43.478 6.78 6.78 0.00 4.41
164 165 4.965532 ACCTCTAAATCTCATACCTGCAGT 59.034 41.667 13.81 3.45 0.00 4.40
165 166 5.163364 ACCTCTAAATCTCATACCTGCAGTG 60.163 44.000 13.81 4.59 0.00 3.66
166 167 4.697514 TCTAAATCTCATACCTGCAGTGC 58.302 43.478 13.81 8.58 0.00 4.40
167 168 3.354948 AAATCTCATACCTGCAGTGCA 57.645 42.857 18.58 18.58 36.92 4.57
183 184 1.368579 GCAGTGCAGTGGCCAAATT 59.631 52.632 22.71 0.00 40.13 1.82
220 221 0.455005 GCATTCCTGCTTCTCTTGGC 59.545 55.000 0.00 0.00 45.32 4.52
221 222 1.101331 CATTCCTGCTTCTCTTGGCC 58.899 55.000 0.00 0.00 0.00 5.36
240 241 2.674380 GGGAGCAACAGCCCTGTG 60.674 66.667 1.07 0.00 44.13 3.66
245 246 0.535102 AGCAACAGCCCTGTGTACAC 60.535 55.000 19.36 19.36 44.13 2.90
246 247 0.817634 GCAACAGCCCTGTGTACACA 60.818 55.000 26.37 26.37 44.13 3.72
248 249 1.536766 CAACAGCCCTGTGTACACATG 59.463 52.381 28.03 24.01 44.13 3.21
250 251 1.974957 ACAGCCCTGTGTACACATGTA 59.025 47.619 28.03 6.37 43.11 2.29
251 252 2.571653 ACAGCCCTGTGTACACATGTAT 59.428 45.455 28.03 13.19 43.11 2.29
252 253 2.938451 CAGCCCTGTGTACACATGTATG 59.062 50.000 28.03 19.76 41.01 2.39
253 254 2.571653 AGCCCTGTGTACACATGTATGT 59.428 45.455 28.03 9.17 41.01 2.29
254 255 3.772572 AGCCCTGTGTACACATGTATGTA 59.227 43.478 28.03 3.71 41.01 2.29
255 256 4.408921 AGCCCTGTGTACACATGTATGTAT 59.591 41.667 28.03 7.38 41.01 2.29
256 257 5.600898 AGCCCTGTGTACACATGTATGTATA 59.399 40.000 28.03 2.22 41.01 1.47
257 258 5.926542 GCCCTGTGTACACATGTATGTATAG 59.073 44.000 28.03 12.53 41.01 1.31
258 259 6.462487 GCCCTGTGTACACATGTATGTATAGT 60.462 42.308 28.03 0.00 41.01 2.12
259 260 7.255695 GCCCTGTGTACACATGTATGTATAGTA 60.256 40.741 28.03 1.04 41.01 1.82
260 261 8.635328 CCCTGTGTACACATGTATGTATAGTAA 58.365 37.037 28.03 0.38 41.01 2.24
261 262 9.678941 CCTGTGTACACATGTATGTATAGTAAG 57.321 37.037 28.03 10.84 41.01 2.34
266 267 9.688592 GTACACATGTATGTATAGTAAGTTCCC 57.311 37.037 0.00 0.00 39.39 3.97
267 268 8.548880 ACACATGTATGTATAGTAAGTTCCCT 57.451 34.615 0.00 0.00 39.39 4.20
268 269 8.639761 ACACATGTATGTATAGTAAGTTCCCTC 58.360 37.037 0.00 0.00 39.39 4.30
269 270 8.088981 CACATGTATGTATAGTAAGTTCCCTCC 58.911 40.741 0.00 0.00 39.39 4.30
270 271 7.234988 ACATGTATGTATAGTAAGTTCCCTCCC 59.765 40.741 0.00 0.00 39.68 4.30
271 272 6.930475 TGTATGTATAGTAAGTTCCCTCCCT 58.070 40.000 0.00 0.00 0.00 4.20
272 273 7.008941 TGTATGTATAGTAAGTTCCCTCCCTC 58.991 42.308 0.00 0.00 0.00 4.30
273 274 4.812653 TGTATAGTAAGTTCCCTCCCTCC 58.187 47.826 0.00 0.00 0.00 4.30
274 275 2.862850 TAGTAAGTTCCCTCCCTCCC 57.137 55.000 0.00 0.00 0.00 4.30
275 276 1.102938 AGTAAGTTCCCTCCCTCCCT 58.897 55.000 0.00 0.00 0.00 4.20
276 277 1.008571 AGTAAGTTCCCTCCCTCCCTC 59.991 57.143 0.00 0.00 0.00 4.30
277 278 1.008571 GTAAGTTCCCTCCCTCCCTCT 59.991 57.143 0.00 0.00 0.00 3.69
278 279 0.252927 AAGTTCCCTCCCTCCCTCTG 60.253 60.000 0.00 0.00 0.00 3.35
279 280 1.081277 GTTCCCTCCCTCCCTCTGT 59.919 63.158 0.00 0.00 0.00 3.41
280 281 0.547954 GTTCCCTCCCTCCCTCTGTT 60.548 60.000 0.00 0.00 0.00 3.16
291 462 3.071602 CCTCCCTCTGTTTCTGTTTCTCA 59.928 47.826 0.00 0.00 0.00 3.27
294 465 3.142174 CCTCTGTTTCTGTTTCTCACCC 58.858 50.000 0.00 0.00 0.00 4.61
298 469 6.187727 TCTGTTTCTGTTTCTCACCCTATT 57.812 37.500 0.00 0.00 0.00 1.73
299 470 6.601332 TCTGTTTCTGTTTCTCACCCTATTT 58.399 36.000 0.00 0.00 0.00 1.40
301 472 7.559897 TCTGTTTCTGTTTCTCACCCTATTTTT 59.440 33.333 0.00 0.00 0.00 1.94
302 473 8.754991 TGTTTCTGTTTCTCACCCTATTTTTA 57.245 30.769 0.00 0.00 0.00 1.52
303 474 8.846211 TGTTTCTGTTTCTCACCCTATTTTTAG 58.154 33.333 0.00 0.00 0.00 1.85
307 478 7.664318 TCTGTTTCTCACCCTATTTTTAGGAAC 59.336 37.037 0.53 0.00 39.60 3.62
308 479 6.428771 TGTTTCTCACCCTATTTTTAGGAACG 59.571 38.462 0.53 0.00 39.60 3.95
309 480 5.093849 TCTCACCCTATTTTTAGGAACGG 57.906 43.478 0.53 0.00 39.60 4.44
310 481 4.778958 TCTCACCCTATTTTTAGGAACGGA 59.221 41.667 0.53 0.00 39.60 4.69
311 482 5.248934 TCTCACCCTATTTTTAGGAACGGAA 59.751 40.000 0.53 0.00 39.60 4.30
312 483 5.493809 TCACCCTATTTTTAGGAACGGAAG 58.506 41.667 0.53 0.00 39.60 3.46
313 484 4.638865 CACCCTATTTTTAGGAACGGAAGG 59.361 45.833 0.53 0.00 39.60 3.46
314 485 4.537288 ACCCTATTTTTAGGAACGGAAGGA 59.463 41.667 0.53 0.00 39.60 3.36
315 486 5.123936 CCCTATTTTTAGGAACGGAAGGAG 58.876 45.833 0.53 0.00 39.60 3.69
317 488 6.126968 CCCTATTTTTAGGAACGGAAGGAGTA 60.127 42.308 0.53 0.00 39.60 2.59
322 493 2.606378 AGGAACGGAAGGAGTACAACT 58.394 47.619 0.00 0.00 0.00 3.16
359 530 3.524095 AACCCATCAAGAATGTGGTCA 57.476 42.857 0.00 0.00 37.72 4.02
375 573 1.682323 GGTCAACTAACCCCGCAAAAA 59.318 47.619 0.00 0.00 32.82 1.94
429 775 4.202070 CCGGTTTTGAACTAAGCCTCAAAA 60.202 41.667 6.00 6.00 44.94 2.44
430 776 4.976116 CGGTTTTGAACTAAGCCTCAAAAG 59.024 41.667 9.56 0.00 46.66 2.27
444 790 5.066505 AGCCTCAAAAGTGACAACTTAACTG 59.933 40.000 0.00 0.00 46.15 3.16
445 791 5.163652 GCCTCAAAAGTGACAACTTAACTGT 60.164 40.000 0.00 0.00 46.15 3.55
446 792 6.487103 CCTCAAAAGTGACAACTTAACTGTC 58.513 40.000 6.14 6.14 46.15 3.51
448 794 5.941058 TCAAAAGTGACAACTTAACTGTCCA 59.059 36.000 9.44 0.00 46.15 4.02
449 795 6.601613 TCAAAAGTGACAACTTAACTGTCCAT 59.398 34.615 9.44 0.00 46.15 3.41
450 796 6.377327 AAAGTGACAACTTAACTGTCCATG 57.623 37.500 9.44 0.00 46.15 3.66
451 797 4.389374 AGTGACAACTTAACTGTCCATGG 58.611 43.478 4.97 4.97 42.13 3.66
452 798 4.102524 AGTGACAACTTAACTGTCCATGGA 59.897 41.667 11.44 11.44 42.13 3.41
453 799 4.213482 GTGACAACTTAACTGTCCATGGAC 59.787 45.833 33.97 33.97 42.13 4.02
454 800 8.319752 AGTGACAACTTAACTGTCCATGGACA 62.320 42.308 38.54 38.54 42.51 4.02
461 807 3.578456 GTCCATGGACACCGCAAG 58.422 61.111 35.21 0.00 44.02 4.01
474 820 1.809869 CGCAAGGACGAGATCTCCA 59.190 57.895 17.13 0.00 34.06 3.86
475 821 0.526524 CGCAAGGACGAGATCTCCAC 60.527 60.000 17.13 10.66 34.06 4.02
485 917 1.006805 GATCTCCACCGAGGCGATG 60.007 63.158 4.40 0.00 41.86 3.84
503 935 3.900446 GGCAACAAGAAGCTTGCAT 57.100 47.368 2.10 0.00 43.89 3.96
504 936 1.706443 GGCAACAAGAAGCTTGCATC 58.294 50.000 2.10 0.00 43.89 3.91
505 937 1.271656 GGCAACAAGAAGCTTGCATCT 59.728 47.619 2.10 0.00 43.89 2.90
506 938 2.288640 GGCAACAAGAAGCTTGCATCTT 60.289 45.455 2.10 7.20 43.89 2.40
507 939 2.985139 GCAACAAGAAGCTTGCATCTTC 59.015 45.455 2.10 16.92 42.05 2.87
508 940 3.572584 CAACAAGAAGCTTGCATCTTCC 58.427 45.455 19.53 7.60 40.48 3.46
509 941 2.165998 ACAAGAAGCTTGCATCTTCCC 58.834 47.619 19.53 3.73 40.48 3.97
510 942 1.475682 CAAGAAGCTTGCATCTTCCCC 59.524 52.381 19.53 3.18 40.48 4.81
511 943 0.393537 AGAAGCTTGCATCTTCCCCG 60.394 55.000 19.53 0.00 40.48 5.73
512 944 0.392998 GAAGCTTGCATCTTCCCCGA 60.393 55.000 2.10 0.00 35.19 5.14
513 945 0.678048 AAGCTTGCATCTTCCCCGAC 60.678 55.000 0.00 0.00 0.00 4.79
514 946 1.377202 GCTTGCATCTTCCCCGACA 60.377 57.895 0.00 0.00 0.00 4.35
515 947 0.749454 GCTTGCATCTTCCCCGACAT 60.749 55.000 0.00 0.00 0.00 3.06
516 948 1.019673 CTTGCATCTTCCCCGACATG 58.980 55.000 0.00 0.00 0.00 3.21
517 949 0.394216 TTGCATCTTCCCCGACATGG 60.394 55.000 0.00 0.00 37.55 3.66
518 950 2.189499 GCATCTTCCCCGACATGGC 61.189 63.158 0.00 0.00 35.87 4.40
519 951 1.224315 CATCTTCCCCGACATGGCA 59.776 57.895 0.00 0.00 35.87 4.92
520 952 1.097547 CATCTTCCCCGACATGGCAC 61.098 60.000 0.00 0.00 35.87 5.01
521 953 2.593468 ATCTTCCCCGACATGGCACG 62.593 60.000 0.00 0.52 35.87 5.34
522 954 3.309436 CTTCCCCGACATGGCACGA 62.309 63.158 0.00 0.00 35.87 4.35
523 955 2.593468 CTTCCCCGACATGGCACGAT 62.593 60.000 0.00 0.00 35.87 3.73
524 956 2.867793 TTCCCCGACATGGCACGATG 62.868 60.000 0.00 0.00 35.87 3.84
525 957 3.576356 CCCGACATGGCACGATGC 61.576 66.667 0.00 0.00 44.08 3.91
526 958 2.512286 CCGACATGGCACGATGCT 60.512 61.111 0.00 0.00 44.28 3.79
527 959 2.108514 CCGACATGGCACGATGCTT 61.109 57.895 0.00 0.00 44.28 3.91
528 960 1.061411 CGACATGGCACGATGCTTG 59.939 57.895 0.00 9.59 44.28 4.01
529 961 1.360931 CGACATGGCACGATGCTTGA 61.361 55.000 0.00 0.00 44.28 3.02
530 962 1.019673 GACATGGCACGATGCTTGAT 58.980 50.000 0.00 0.00 44.28 2.57
531 963 0.736636 ACATGGCACGATGCTTGATG 59.263 50.000 0.00 10.64 44.28 3.07
532 964 1.018910 CATGGCACGATGCTTGATGA 58.981 50.000 9.31 0.00 44.28 2.92
533 965 1.607148 CATGGCACGATGCTTGATGAT 59.393 47.619 9.31 0.00 44.28 2.45
534 966 1.302366 TGGCACGATGCTTGATGATC 58.698 50.000 9.31 0.00 44.28 2.92
535 967 1.302366 GGCACGATGCTTGATGATCA 58.698 50.000 0.00 0.00 44.28 2.92
536 968 1.672363 GGCACGATGCTTGATGATCAA 59.328 47.619 7.73 7.73 44.28 2.57
549 981 5.246981 TGATGATCAAGGTTCTCCAGTTT 57.753 39.130 0.00 0.00 35.89 2.66
550 982 5.634118 TGATGATCAAGGTTCTCCAGTTTT 58.366 37.500 0.00 0.00 35.89 2.43
562 994 6.149640 GGTTCTCCAGTTTTATGTCTCCTTTC 59.850 42.308 0.00 0.00 0.00 2.62
577 1009 4.104738 TCTCCTTTCCCTTTCACTGTGATT 59.895 41.667 11.86 0.00 0.00 2.57
584 1016 8.885494 TTTCCCTTTCACTGTGATTTATTTTG 57.115 30.769 11.86 0.00 0.00 2.44
587 1019 5.639082 CCTTTCACTGTGATTTATTTTGGGC 59.361 40.000 11.86 0.00 0.00 5.36
592 1024 7.222872 TCACTGTGATTTATTTTGGGCAAATT 58.777 30.769 6.36 0.00 36.43 1.82
593 1025 7.172875 TCACTGTGATTTATTTTGGGCAAATTG 59.827 33.333 6.36 0.00 36.43 2.32
622 1054 2.095415 CCGAACCCGAACCTGAATTTTC 60.095 50.000 0.00 0.00 38.22 2.29
641 1078 6.532988 TTTTCGGGTAGGAAAAATTATGGG 57.467 37.500 0.00 0.00 41.51 4.00
647 1084 6.054941 GGGTAGGAAAAATTATGGGCAAATG 58.945 40.000 0.00 0.00 0.00 2.32
650 1358 6.371595 AGGAAAAATTATGGGCAAATGTCA 57.628 33.333 0.00 0.00 0.00 3.58
651 1359 6.777782 AGGAAAAATTATGGGCAAATGTCAA 58.222 32.000 0.00 0.00 0.00 3.18
669 1377 6.757897 TGTCAAGTGTCATTTCTGAAAACT 57.242 33.333 6.95 3.32 33.92 2.66
679 1390 7.444183 TGTCATTTCTGAAAACTCGAATTACCT 59.556 33.333 6.95 0.00 31.85 3.08
711 1422 1.012486 CAGGTAAACCCGAGCGTCAC 61.012 60.000 0.00 0.00 38.74 3.67
716 1427 0.878961 AAACCCGAGCGTCACAACTC 60.879 55.000 0.00 0.00 0.00 3.01
717 1428 2.023414 AACCCGAGCGTCACAACTCA 62.023 55.000 0.00 0.00 32.98 3.41
721 1432 0.504384 CGAGCGTCACAACTCAACTG 59.496 55.000 0.00 0.00 32.98 3.16
725 1436 1.933853 GCGTCACAACTCAACTGAAGT 59.066 47.619 0.00 0.00 0.00 3.01
750 1461 0.963355 GCCGTAGCATTTGGTTGGGA 60.963 55.000 0.00 0.00 39.53 4.37
751 1462 1.762708 CCGTAGCATTTGGTTGGGAT 58.237 50.000 0.00 0.00 0.00 3.85
755 1466 4.023193 CCGTAGCATTTGGTTGGGATTATC 60.023 45.833 0.00 0.00 0.00 1.75
788 1504 2.859538 GTGGCATTATTGAAATGTGGCG 59.140 45.455 0.00 0.00 35.31 5.69
790 1506 3.056250 TGGCATTATTGAAATGTGGCGTT 60.056 39.130 10.19 0.00 35.31 4.84
791 1507 3.932089 GGCATTATTGAAATGTGGCGTTT 59.068 39.130 0.23 0.00 0.00 3.60
792 1508 4.391523 GGCATTATTGAAATGTGGCGTTTT 59.608 37.500 0.23 0.00 0.00 2.43
793 1509 5.315195 GCATTATTGAAATGTGGCGTTTTG 58.685 37.500 0.23 0.00 0.00 2.44
802 1518 1.098712 GTGGCGTTTTGTGTGGAGGA 61.099 55.000 0.00 0.00 0.00 3.71
805 1521 1.155424 GCGTTTTGTGTGGAGGACGA 61.155 55.000 0.00 0.00 32.73 4.20
806 1522 0.859232 CGTTTTGTGTGGAGGACGAG 59.141 55.000 0.00 0.00 32.73 4.18
808 1524 2.135933 GTTTTGTGTGGAGGACGAGAG 58.864 52.381 0.00 0.00 0.00 3.20
809 1525 0.033504 TTTGTGTGGAGGACGAGAGC 59.966 55.000 0.00 0.00 0.00 4.09
810 1526 1.112916 TTGTGTGGAGGACGAGAGCA 61.113 55.000 0.00 0.00 0.00 4.26
811 1527 1.214062 GTGTGGAGGACGAGAGCAG 59.786 63.158 0.00 0.00 0.00 4.24
812 1528 1.228583 TGTGGAGGACGAGAGCAGT 60.229 57.895 0.00 0.00 0.00 4.40
813 1529 1.244697 TGTGGAGGACGAGAGCAGTC 61.245 60.000 0.00 0.00 37.86 3.51
814 1530 2.041115 TGGAGGACGAGAGCAGTCG 61.041 63.158 6.21 6.21 45.76 4.18
815 1531 2.766400 GGAGGACGAGAGCAGTCGG 61.766 68.421 11.81 0.00 44.53 4.79
831 2106 2.993008 GGCTGCTCTCCATCCACA 59.007 61.111 0.00 0.00 29.96 4.17
835 2110 1.538629 TGCTCTCCATCCACACCCA 60.539 57.895 0.00 0.00 0.00 4.51
836 2111 1.133181 TGCTCTCCATCCACACCCAA 61.133 55.000 0.00 0.00 0.00 4.12
837 2112 0.257039 GCTCTCCATCCACACCCAAT 59.743 55.000 0.00 0.00 0.00 3.16
839 2114 0.918983 TCTCCATCCACACCCAATCC 59.081 55.000 0.00 0.00 0.00 3.01
850 2125 1.153168 CCCAATCCACTACCCAGCG 60.153 63.158 0.00 0.00 0.00 5.18
852 2127 1.622607 CCAATCCACTACCCAGCGGA 61.623 60.000 0.00 0.00 37.41 5.54
854 2129 1.213296 AATCCACTACCCAGCGGATT 58.787 50.000 1.90 1.90 45.09 3.01
857 2132 0.541863 CCACTACCCAGCGGATTTCT 59.458 55.000 0.00 0.00 0.00 2.52
858 2133 1.065418 CCACTACCCAGCGGATTTCTT 60.065 52.381 0.00 0.00 0.00 2.52
861 2136 0.326595 TACCCAGCGGATTTCTTGCA 59.673 50.000 0.00 0.00 0.00 4.08
862 2137 0.962356 ACCCAGCGGATTTCTTGCAG 60.962 55.000 0.00 0.00 0.00 4.41
865 2140 0.455633 CAGCGGATTTCTTGCAGTGC 60.456 55.000 8.58 8.58 0.00 4.40
866 2141 0.890542 AGCGGATTTCTTGCAGTGCA 60.891 50.000 15.37 15.37 36.47 4.57
867 2142 0.455633 GCGGATTTCTTGCAGTGCAG 60.456 55.000 18.81 12.53 40.61 4.41
870 2145 1.135859 GGATTTCTTGCAGTGCAGACG 60.136 52.381 18.81 10.98 40.61 4.18
871 2146 0.877071 ATTTCTTGCAGTGCAGACGG 59.123 50.000 18.81 10.07 40.61 4.79
872 2147 0.179059 TTTCTTGCAGTGCAGACGGA 60.179 50.000 18.81 12.15 40.61 4.69
873 2148 0.601046 TTCTTGCAGTGCAGACGGAG 60.601 55.000 18.81 12.51 40.61 4.63
875 2150 4.687215 TGCAGTGCAGACGGAGGC 62.687 66.667 15.37 0.00 33.32 4.70
876 2151 4.385405 GCAGTGCAGACGGAGGCT 62.385 66.667 11.09 0.00 0.00 4.58
878 2153 3.386237 AGTGCAGACGGAGGCTCC 61.386 66.667 24.06 24.06 0.00 4.70
879 2154 3.695606 GTGCAGACGGAGGCTCCA 61.696 66.667 31.69 9.70 35.91 3.86
880 2155 3.695606 TGCAGACGGAGGCTCCAC 61.696 66.667 31.69 23.60 35.91 4.02
881 2156 4.803426 GCAGACGGAGGCTCCACG 62.803 72.222 31.69 21.08 35.91 4.94
882 2157 3.374402 CAGACGGAGGCTCCACGT 61.374 66.667 31.69 24.08 44.35 4.49
883 2158 2.044555 CAGACGGAGGCTCCACGTA 61.045 63.158 31.69 0.00 41.40 3.57
884 2159 2.045131 AGACGGAGGCTCCACGTAC 61.045 63.158 31.69 16.99 41.40 3.67
889 3777 2.989824 AGGCTCCACGTACGCTGT 60.990 61.111 16.72 0.00 0.00 4.40
891 3779 2.506438 GCTCCACGTACGCTGTCC 60.506 66.667 16.72 0.00 0.00 4.02
892 3780 2.202440 CTCCACGTACGCTGTCCG 60.202 66.667 16.72 1.33 44.21 4.79
900 3788 1.004320 TACGCTGTCCGCCACATTT 60.004 52.632 0.00 0.00 41.76 2.32
903 3791 1.577328 CGCTGTCCGCCACATTTCTT 61.577 55.000 0.00 0.00 33.23 2.52
908 3796 0.537143 TCCGCCACATTTCTTGCAGT 60.537 50.000 0.00 0.00 0.00 4.40
909 3797 0.387622 CCGCCACATTTCTTGCAGTG 60.388 55.000 0.00 0.00 0.00 3.66
912 3800 1.933500 GCCACATTTCTTGCAGTGCAG 60.934 52.381 18.81 12.53 40.61 4.41
914 3802 2.390938 CACATTTCTTGCAGTGCAGTG 58.609 47.619 18.81 17.56 40.61 3.66
922 3810 3.667282 CAGTGCAGTGCAGGCCAC 61.667 66.667 20.42 6.27 40.08 5.01
923 3811 4.962836 AGTGCAGTGCAGGCCACC 62.963 66.667 20.42 5.44 45.83 4.61
927 3815 3.357079 CAGTGCAGGCCACCGAAC 61.357 66.667 5.01 0.00 45.83 3.95
928 3816 4.643387 AGTGCAGGCCACCGAACC 62.643 66.667 5.01 0.00 45.83 3.62
929 3817 4.947147 GTGCAGGCCACCGAACCA 62.947 66.667 5.01 0.00 38.55 3.67
930 3818 4.947147 TGCAGGCCACCGAACCAC 62.947 66.667 5.01 0.00 0.00 4.16
935 3823 4.629523 GCCACCGAACCACCCGAA 62.630 66.667 0.00 0.00 0.00 4.30
936 3824 2.349755 CCACCGAACCACCCGAAT 59.650 61.111 0.00 0.00 0.00 3.34
937 3825 1.743995 CCACCGAACCACCCGAATC 60.744 63.158 0.00 0.00 0.00 2.52
938 3826 1.743995 CACCGAACCACCCGAATCC 60.744 63.158 0.00 0.00 0.00 3.01
939 3827 2.218454 ACCGAACCACCCGAATCCA 61.218 57.895 0.00 0.00 0.00 3.41
942 3830 1.377229 GAACCACCCGAATCCACCA 59.623 57.895 0.00 0.00 0.00 4.17
949 3837 0.462047 CCCGAATCCACCACTAGCAC 60.462 60.000 0.00 0.00 0.00 4.40
950 3838 0.462047 CCGAATCCACCACTAGCACC 60.462 60.000 0.00 0.00 0.00 5.01
1284 4233 1.489649 CAGATCCATGACAGGCTCCTT 59.510 52.381 0.00 0.00 0.00 3.36
1788 5206 0.689055 ATGTGCTGAAGCTCACCAGA 59.311 50.000 9.07 0.00 45.57 3.86
1829 5259 3.350833 CTGCAACTAAAGGAGGAAGCAT 58.649 45.455 0.00 0.00 32.30 3.79
1871 5301 7.899973 ACAACCAATTTAAATCAGCTTCAGAT 58.100 30.769 0.10 0.00 0.00 2.90
1888 5318 5.791336 TCAGATATCCATAGCAGAACGTT 57.209 39.130 0.00 0.00 0.00 3.99
1915 5345 7.660208 TCAAGTCCAAGAGGTTTCTAATTGTAC 59.340 37.037 0.00 0.00 35.89 2.90
2039 5469 2.561478 TTCCCAAAGGTAGCAGACAC 57.439 50.000 0.00 0.00 0.00 3.67
2127 5572 8.523915 TTGAAGCATGTATATTTGGTGAAGAT 57.476 30.769 0.00 0.00 0.00 2.40
2156 5601 5.104776 AGCCTGAGCATTACAAAGATGAGTA 60.105 40.000 0.00 0.00 43.56 2.59
2163 5608 5.278169 GCATTACAAAGATGAGTATGCTGGG 60.278 44.000 0.00 0.00 36.34 4.45
2199 5644 1.464997 GCAGACAAGCTAAAGGGTTCG 59.535 52.381 0.00 0.00 32.86 3.95
2509 5957 6.713450 GGAAGAACTAGTGGACAATGGTTTTA 59.287 38.462 0.00 0.00 30.52 1.52
2545 6056 3.365264 CGATTATTGGGGTGATCAATGCG 60.365 47.826 0.00 0.00 36.40 4.73
2551 6062 2.969262 TGGGGTGATCAATGCGAGTATA 59.031 45.455 0.00 0.00 0.00 1.47
2647 6158 0.535328 CAGAGCTGATGCCATCCCAG 60.535 60.000 1.49 0.00 40.80 4.45
2760 6274 4.976224 TGCTAGTCTACGCACTTTGATA 57.024 40.909 0.00 0.00 0.00 2.15
2827 6371 9.859152 AAGATAGCTTCAAGGAAATAAATAGCT 57.141 29.630 0.00 0.00 40.49 3.32
3004 6548 9.586732 TGAAATTCTTGGACCTATATAATTGGG 57.413 33.333 0.00 0.00 0.00 4.12
3025 6569 1.808411 TGGTCGTTCTGATTTGCCTC 58.192 50.000 0.00 0.00 0.00 4.70
3174 6718 3.128242 GCATGGGATTTGAACTGACAGAG 59.872 47.826 10.08 0.00 0.00 3.35
3298 6842 4.202409 GGAATCTGGAGGAGTTGGGATTAG 60.202 50.000 0.00 0.00 0.00 1.73
3471 7099 3.376859 AGACTCTCGCTCTAACTGATGTG 59.623 47.826 0.00 0.00 0.00 3.21
3523 7151 3.942115 GCTACCAAATCTCAAGGAACTCC 59.058 47.826 0.00 0.00 38.49 3.85
3529 7157 5.337009 CCAAATCTCAAGGAACTCCATTTGG 60.337 44.000 16.89 16.89 40.38 3.28
3546 7174 6.955851 TCCATTTGGAGAGAAATTCTGGAATT 59.044 34.615 0.00 3.06 39.84 2.17
3783 7411 3.454812 GAGTTTCTAGGTGCCCCAAGATA 59.545 47.826 0.00 0.00 0.00 1.98
3850 7520 5.689383 TGTTAAAACAGGTGATTCAGAGC 57.311 39.130 0.00 0.00 34.30 4.09
3880 7556 9.076781 TGTTGTCTTATGATGGAAAGAAATTGA 57.923 29.630 0.00 0.00 33.70 2.57
3897 7573 7.062957 AGAAATTGATTGTTAGAGGGTATGGG 58.937 38.462 0.00 0.00 0.00 4.00
3901 7577 3.799590 TTGTTAGAGGGTATGGGGGTA 57.200 47.619 0.00 0.00 0.00 3.69
3936 7612 8.429641 TCCCACAATCTGGATAAAGTAGAATAC 58.570 37.037 0.00 0.00 43.95 1.89
3953 7695 9.593565 AGTAGAATACATGGATGTCAGAAGATA 57.406 33.333 0.00 0.00 46.26 1.98
3955 7697 8.255111 AGAATACATGGATGTCAGAAGATACA 57.745 34.615 0.00 0.00 41.97 2.29
3959 7701 6.656902 ACATGGATGTCAGAAGATACAACAT 58.343 36.000 0.00 0.00 35.87 2.71
4001 7743 3.134574 TGGCAGTATTGTCTTCCGTTT 57.865 42.857 0.00 0.00 0.00 3.60
4017 7759 4.806330 TCCGTTTAGTTAAGAGTCTGCAG 58.194 43.478 7.63 7.63 0.00 4.41
4037 7779 8.355913 TCTGCAGTTACATGTATCTCATCTTAG 58.644 37.037 14.67 3.07 34.09 2.18
4041 7786 8.140628 CAGTTACATGTATCTCATCTTAGCAGT 58.859 37.037 12.58 0.00 34.09 4.40
4087 7832 4.338118 TGTTAAACTGTTTCCCAGCTCTTG 59.662 41.667 9.38 0.00 45.68 3.02
4158 7960 1.558294 TCATCCAGCTCACTGCAGAAT 59.442 47.619 23.35 0.00 45.94 2.40
4245 8050 2.373169 TCAGGAGGACAAGTCATTGCTT 59.627 45.455 2.29 0.00 40.27 3.91
4247 8052 1.734465 GGAGGACAAGTCATTGCTTCG 59.266 52.381 2.29 0.00 40.27 3.79
4296 8101 0.615331 TGTTCTCTCAGTGGCCCATC 59.385 55.000 0.00 0.00 0.00 3.51
4302 8107 2.187946 CAGTGGCCCATCGGAGAC 59.812 66.667 0.00 0.00 42.51 3.36
4370 8193 1.760192 AGCATGAAGTCAATGGCTCC 58.240 50.000 0.00 0.00 29.80 4.70
4380 8203 1.065199 TCAATGGCTCCGCTCTCAAAT 60.065 47.619 0.00 0.00 0.00 2.32
4395 8218 4.075682 TCTCAAATCTCACGTCTCTCACT 58.924 43.478 0.00 0.00 0.00 3.41
4405 8228 4.020396 TCACGTCTCTCACTAGTCTAAGGT 60.020 45.833 0.00 0.00 0.00 3.50
4418 8241 7.606456 CACTAGTCTAAGGTTAAAAATCTGCCA 59.394 37.037 0.00 0.00 0.00 4.92
4536 8380 1.273327 GAGGTGGCAAGGACCAAATTG 59.727 52.381 0.00 0.00 42.70 2.32
4539 8386 2.547855 GGTGGCAAGGACCAAATTGTTC 60.548 50.000 0.00 0.00 42.70 3.18
4550 8397 2.289010 CCAAATTGTTCCCTGCAGGTTC 60.289 50.000 30.63 19.58 36.75 3.62
4551 8398 2.364970 CAAATTGTTCCCTGCAGGTTCA 59.635 45.455 30.63 21.77 36.75 3.18
4623 8473 1.407437 CCTATTTGCAACCTCCTCGCT 60.407 52.381 0.00 0.00 0.00 4.93
4656 8536 5.504665 CCACACACTTGAATTCAGTTCTGAC 60.505 44.000 8.41 0.00 37.72 3.51
4713 8593 2.658064 GCTGCAGCTCCTCACCTCT 61.658 63.158 31.33 0.00 38.21 3.69
4773 8910 2.646121 CCTTCCTCAAGGGTTGCAC 58.354 57.895 0.00 0.00 45.27 4.57
4803 8940 6.672266 TCTTCTCTCAAGGAGTTATGTGTT 57.328 37.500 0.00 0.00 42.40 3.32
4879 9016 4.043037 AGAAAACTACGGATGGATCGTC 57.957 45.455 0.00 0.00 41.38 4.20
4880 9017 2.486951 AAACTACGGATGGATCGTCG 57.513 50.000 0.00 0.00 41.38 5.12
4882 9019 1.099295 ACTACGGATGGATCGTCGCA 61.099 55.000 0.00 0.00 41.38 5.10
4972 9697 2.629137 TGAAGGTAACACTTGTCGCCTA 59.371 45.455 5.45 0.00 41.41 3.93
4990 9720 8.024285 TGTCGCCTACCTATTTTATTTGTTTTG 58.976 33.333 0.00 0.00 0.00 2.44
5112 9854 2.296752 TCCACCACTGTTGCAATCAATG 59.703 45.455 0.59 2.99 34.29 2.82
5206 9966 3.306917 TGCAACGCTAGCTGTTAACTA 57.693 42.857 19.55 8.07 0.00 2.24
5208 9968 5.001237 TGCAACGCTAGCTGTTAACTATA 57.999 39.130 19.55 0.00 0.00 1.31
5210 9970 5.462068 TGCAACGCTAGCTGTTAACTATATG 59.538 40.000 19.55 10.32 0.00 1.78
5211 9971 5.690409 GCAACGCTAGCTGTTAACTATATGA 59.310 40.000 19.55 0.00 0.00 2.15
5213 9973 7.410942 GCAACGCTAGCTGTTAACTATATGATC 60.411 40.741 19.55 0.00 0.00 2.92
5214 9974 6.315551 ACGCTAGCTGTTAACTATATGATCG 58.684 40.000 13.93 4.13 0.00 3.69
5216 9976 7.148222 ACGCTAGCTGTTAACTATATGATCGAT 60.148 37.037 13.93 0.00 0.00 3.59
5217 9977 8.336080 CGCTAGCTGTTAACTATATGATCGATA 58.664 37.037 13.93 0.00 0.00 2.92
5218 9978 9.440784 GCTAGCTGTTAACTATATGATCGATAC 57.559 37.037 7.70 0.00 0.00 2.24
5221 9981 9.627395 AGCTGTTAACTATATGATCGATACAAC 57.373 33.333 7.22 0.00 0.00 3.32
5222 9982 9.406828 GCTGTTAACTATATGATCGATACAACA 57.593 33.333 7.22 0.00 0.00 3.33
5309 10339 5.896963 AGAACCAAATTTCTGATCCTTCCT 58.103 37.500 0.00 0.00 34.40 3.36
5320 10350 6.874278 TCTGATCCTTCCTTTTATGACTGA 57.126 37.500 0.00 0.00 0.00 3.41
5344 10385 4.456280 TCATAGTACAGAGCAACCACTG 57.544 45.455 0.00 0.00 39.65 3.66
5388 10432 4.067896 TCCTGCTTGCTTTCTCTAGTTTG 58.932 43.478 0.00 0.00 0.00 2.93
5425 10582 1.531149 ACACACGCTTCTTTTCATCCG 59.469 47.619 0.00 0.00 0.00 4.18
5457 10620 3.983044 ACCCCTTTTGTGCTAGTAGAG 57.017 47.619 0.00 0.00 0.00 2.43
5490 10653 3.135994 ACACCACCGTTGATGTTACTTC 58.864 45.455 0.00 0.00 0.00 3.01
5491 10654 2.482721 CACCACCGTTGATGTTACTTCC 59.517 50.000 0.00 0.00 0.00 3.46
5551 10714 6.735694 GCATTTTCTTTGTCAGGCTTCTGTTA 60.736 38.462 0.00 0.00 39.45 2.41
5733 10984 5.473504 AGAGGTATTTAACTGCCTGTTGTTG 59.526 40.000 7.19 0.00 39.55 3.33
5807 11066 8.650143 AATCAAGTGCCTTTATTTCCTCTTTA 57.350 30.769 0.00 0.00 0.00 1.85
5820 11079 7.573968 ATTTCCTCTTTATTGAATCCTTCCG 57.426 36.000 0.00 0.00 0.00 4.30
5926 11185 8.792830 AATGGTATGGATTCCTATTATTGTCG 57.207 34.615 3.95 0.00 0.00 4.35
5943 11202 9.912634 ATTATTGTCGTGAAGTGAAATTGAATT 57.087 25.926 0.00 0.00 0.00 2.17
5944 11203 7.627585 ATTGTCGTGAAGTGAAATTGAATTG 57.372 32.000 0.00 0.00 0.00 2.32
5947 11206 7.424803 TGTCGTGAAGTGAAATTGAATTGATT 58.575 30.769 0.00 0.00 0.00 2.57
5949 11208 9.393249 GTCGTGAAGTGAAATTGAATTGATTTA 57.607 29.630 0.00 0.00 0.00 1.40
5950 11209 9.393249 TCGTGAAGTGAAATTGAATTGATTTAC 57.607 29.630 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.683802 ACAGAGGATTTTCAGCAGGAAG 58.316 45.455 0.00 0.00 36.72 3.46
12 13 3.795688 ACAGAGGATTTTCAGCAGGAA 57.204 42.857 0.00 0.00 0.00 3.36
13 14 3.795688 AACAGAGGATTTTCAGCAGGA 57.204 42.857 0.00 0.00 0.00 3.86
15 16 4.758674 TGAGAAACAGAGGATTTTCAGCAG 59.241 41.667 0.00 0.00 34.68 4.24
16 17 4.717877 TGAGAAACAGAGGATTTTCAGCA 58.282 39.130 0.00 0.00 34.68 4.41
29 30 6.245115 TGTGCATATTTGTCTGAGAAACAG 57.755 37.500 1.76 0.00 46.97 3.16
30 31 6.822667 ATGTGCATATTTGTCTGAGAAACA 57.177 33.333 1.76 0.00 0.00 2.83
31 32 9.869844 GTATATGTGCATATTTGTCTGAGAAAC 57.130 33.333 0.00 0.00 35.71 2.78
32 33 9.836864 AGTATATGTGCATATTTGTCTGAGAAA 57.163 29.630 0.00 2.25 35.71 2.52
34 35 9.914131 GTAGTATATGTGCATATTTGTCTGAGA 57.086 33.333 0.00 0.00 35.71 3.27
35 36 9.920133 AGTAGTATATGTGCATATTTGTCTGAG 57.080 33.333 0.00 0.00 35.71 3.35
43 44 9.098355 CGGCAATTAGTAGTATATGTGCATATT 57.902 33.333 0.00 0.00 35.71 1.28
44 45 8.474831 TCGGCAATTAGTAGTATATGTGCATAT 58.525 33.333 0.31 0.31 37.69 1.78
45 46 7.832769 TCGGCAATTAGTAGTATATGTGCATA 58.167 34.615 0.00 0.00 32.41 3.14
46 47 6.697395 TCGGCAATTAGTAGTATATGTGCAT 58.303 36.000 0.00 0.00 32.41 3.96
47 48 6.091718 TCGGCAATTAGTAGTATATGTGCA 57.908 37.500 0.00 0.00 32.41 4.57
48 49 7.435488 CCTATCGGCAATTAGTAGTATATGTGC 59.565 40.741 0.00 0.00 0.00 4.57
49 50 8.683615 TCCTATCGGCAATTAGTAGTATATGTG 58.316 37.037 0.00 0.00 0.00 3.21
50 51 8.684520 GTCCTATCGGCAATTAGTAGTATATGT 58.315 37.037 0.00 0.00 0.00 2.29
51 52 8.683615 TGTCCTATCGGCAATTAGTAGTATATG 58.316 37.037 0.00 0.00 0.00 1.78
52 53 8.684520 GTGTCCTATCGGCAATTAGTAGTATAT 58.315 37.037 0.00 0.00 0.00 0.86
53 54 7.121759 GGTGTCCTATCGGCAATTAGTAGTATA 59.878 40.741 0.00 0.00 0.00 1.47
54 55 6.071503 GGTGTCCTATCGGCAATTAGTAGTAT 60.072 42.308 0.00 0.00 0.00 2.12
55 56 5.242393 GGTGTCCTATCGGCAATTAGTAGTA 59.758 44.000 0.00 0.00 0.00 1.82
56 57 4.038883 GGTGTCCTATCGGCAATTAGTAGT 59.961 45.833 0.00 0.00 0.00 2.73
57 58 4.557205 GGTGTCCTATCGGCAATTAGTAG 58.443 47.826 0.00 0.00 0.00 2.57
58 59 3.322828 GGGTGTCCTATCGGCAATTAGTA 59.677 47.826 0.00 0.00 0.00 1.82
59 60 2.104281 GGGTGTCCTATCGGCAATTAGT 59.896 50.000 0.00 0.00 0.00 2.24
60 61 2.368875 AGGGTGTCCTATCGGCAATTAG 59.631 50.000 0.00 0.00 42.75 1.73
61 62 2.404559 AGGGTGTCCTATCGGCAATTA 58.595 47.619 0.00 0.00 42.75 1.40
62 63 1.213296 AGGGTGTCCTATCGGCAATT 58.787 50.000 0.00 0.00 42.75 2.32
63 64 1.141053 GAAGGGTGTCCTATCGGCAAT 59.859 52.381 0.00 0.00 44.07 3.56
64 65 0.539986 GAAGGGTGTCCTATCGGCAA 59.460 55.000 0.00 0.00 44.07 4.52
65 66 0.616395 TGAAGGGTGTCCTATCGGCA 60.616 55.000 0.00 0.00 44.07 5.69
66 67 0.759346 ATGAAGGGTGTCCTATCGGC 59.241 55.000 0.00 0.00 44.07 5.54
67 68 3.560636 AAATGAAGGGTGTCCTATCGG 57.439 47.619 0.00 0.00 44.07 4.18
68 69 4.261801 ACAAAATGAAGGGTGTCCTATCG 58.738 43.478 0.00 0.00 44.07 2.92
69 70 5.476945 ACAACAAAATGAAGGGTGTCCTATC 59.523 40.000 0.00 0.00 44.07 2.08
70 71 5.393866 ACAACAAAATGAAGGGTGTCCTAT 58.606 37.500 0.00 0.00 44.07 2.57
71 72 4.798882 ACAACAAAATGAAGGGTGTCCTA 58.201 39.130 0.00 0.00 44.07 2.94
73 74 4.400529 AACAACAAAATGAAGGGTGTCC 57.599 40.909 0.00 0.00 0.00 4.02
74 75 4.570369 CCAAACAACAAAATGAAGGGTGTC 59.430 41.667 0.00 0.00 0.00 3.67
75 76 4.512484 CCAAACAACAAAATGAAGGGTGT 58.488 39.130 0.00 0.00 0.00 4.16
76 77 3.312146 GCCAAACAACAAAATGAAGGGTG 59.688 43.478 0.00 0.00 0.00 4.61
77 78 3.054802 TGCCAAACAACAAAATGAAGGGT 60.055 39.130 0.00 0.00 0.00 4.34
78 79 3.539604 TGCCAAACAACAAAATGAAGGG 58.460 40.909 0.00 0.00 0.00 3.95
79 80 4.034279 CACTGCCAAACAACAAAATGAAGG 59.966 41.667 0.00 0.00 0.00 3.46
80 81 4.869297 TCACTGCCAAACAACAAAATGAAG 59.131 37.500 0.00 0.00 0.00 3.02
81 82 4.629200 GTCACTGCCAAACAACAAAATGAA 59.371 37.500 0.00 0.00 0.00 2.57
82 83 4.180057 GTCACTGCCAAACAACAAAATGA 58.820 39.130 0.00 0.00 0.00 2.57
83 84 3.000122 CGTCACTGCCAAACAACAAAATG 60.000 43.478 0.00 0.00 0.00 2.32
84 85 3.119316 TCGTCACTGCCAAACAACAAAAT 60.119 39.130 0.00 0.00 0.00 1.82
85 86 2.229062 TCGTCACTGCCAAACAACAAAA 59.771 40.909 0.00 0.00 0.00 2.44
86 87 1.813178 TCGTCACTGCCAAACAACAAA 59.187 42.857 0.00 0.00 0.00 2.83
87 88 1.454201 TCGTCACTGCCAAACAACAA 58.546 45.000 0.00 0.00 0.00 2.83
88 89 1.333308 CATCGTCACTGCCAAACAACA 59.667 47.619 0.00 0.00 0.00 3.33
89 90 1.333619 ACATCGTCACTGCCAAACAAC 59.666 47.619 0.00 0.00 0.00 3.32
90 91 1.333308 CACATCGTCACTGCCAAACAA 59.667 47.619 0.00 0.00 0.00 2.83
91 92 0.943673 CACATCGTCACTGCCAAACA 59.056 50.000 0.00 0.00 0.00 2.83
92 93 1.225855 TCACATCGTCACTGCCAAAC 58.774 50.000 0.00 0.00 0.00 2.93
93 94 2.076100 GATCACATCGTCACTGCCAAA 58.924 47.619 0.00 0.00 0.00 3.28
94 95 1.276138 AGATCACATCGTCACTGCCAA 59.724 47.619 0.00 0.00 0.00 4.52
95 96 0.897621 AGATCACATCGTCACTGCCA 59.102 50.000 0.00 0.00 0.00 4.92
96 97 1.929836 GAAGATCACATCGTCACTGCC 59.070 52.381 0.00 0.00 37.65 4.85
97 98 1.929836 GGAAGATCACATCGTCACTGC 59.070 52.381 0.00 0.00 39.16 4.40
98 99 3.516981 AGGAAGATCACATCGTCACTG 57.483 47.619 0.00 0.00 39.16 3.66
99 100 3.368843 CCAAGGAAGATCACATCGTCACT 60.369 47.826 0.00 0.00 39.16 3.41
100 101 2.932614 CCAAGGAAGATCACATCGTCAC 59.067 50.000 0.00 0.00 39.16 3.67
101 102 2.677902 GCCAAGGAAGATCACATCGTCA 60.678 50.000 0.00 0.00 39.16 4.35
102 103 1.936547 GCCAAGGAAGATCACATCGTC 59.063 52.381 0.00 0.00 37.11 4.20
103 104 1.556911 AGCCAAGGAAGATCACATCGT 59.443 47.619 0.00 0.00 0.00 3.73
104 105 1.938577 CAGCCAAGGAAGATCACATCG 59.061 52.381 0.00 0.00 0.00 3.84
105 106 2.941720 GACAGCCAAGGAAGATCACATC 59.058 50.000 0.00 0.00 0.00 3.06
106 107 2.356535 GGACAGCCAAGGAAGATCACAT 60.357 50.000 0.00 0.00 0.00 3.21
107 108 1.003580 GGACAGCCAAGGAAGATCACA 59.996 52.381 0.00 0.00 0.00 3.58
108 109 1.003580 TGGACAGCCAAGGAAGATCAC 59.996 52.381 0.00 0.00 42.49 3.06
109 110 1.361204 TGGACAGCCAAGGAAGATCA 58.639 50.000 0.00 0.00 42.49 2.92
119 120 1.071699 GTACTTGGACTTGGACAGCCA 59.928 52.381 0.00 0.00 44.17 4.75
120 121 1.348036 AGTACTTGGACTTGGACAGCC 59.652 52.381 0.00 0.00 0.00 4.85
121 122 2.841442 AGTACTTGGACTTGGACAGC 57.159 50.000 0.00 0.00 0.00 4.40
122 123 3.833070 AGGTAGTACTTGGACTTGGACAG 59.167 47.826 0.00 0.00 0.00 3.51
123 124 3.830755 GAGGTAGTACTTGGACTTGGACA 59.169 47.826 0.00 0.00 0.00 4.02
124 125 4.087907 AGAGGTAGTACTTGGACTTGGAC 58.912 47.826 0.00 0.00 0.00 4.02
125 126 4.399483 AGAGGTAGTACTTGGACTTGGA 57.601 45.455 0.00 0.00 0.00 3.53
126 127 6.600882 TTTAGAGGTAGTACTTGGACTTGG 57.399 41.667 0.00 0.00 0.00 3.61
127 128 8.068892 AGATTTAGAGGTAGTACTTGGACTTG 57.931 38.462 0.00 0.00 0.00 3.16
128 129 7.894364 TGAGATTTAGAGGTAGTACTTGGACTT 59.106 37.037 0.00 0.00 0.00 3.01
129 130 7.411808 TGAGATTTAGAGGTAGTACTTGGACT 58.588 38.462 0.00 0.00 0.00 3.85
130 131 7.642082 TGAGATTTAGAGGTAGTACTTGGAC 57.358 40.000 0.00 0.00 0.00 4.02
131 132 9.352191 GTATGAGATTTAGAGGTAGTACTTGGA 57.648 37.037 0.00 0.00 0.00 3.53
132 133 8.578151 GGTATGAGATTTAGAGGTAGTACTTGG 58.422 40.741 0.00 0.00 0.00 3.61
133 134 9.357161 AGGTATGAGATTTAGAGGTAGTACTTG 57.643 37.037 0.00 0.00 0.00 3.16
134 135 9.357161 CAGGTATGAGATTTAGAGGTAGTACTT 57.643 37.037 0.00 0.00 0.00 2.24
135 136 7.449086 GCAGGTATGAGATTTAGAGGTAGTACT 59.551 40.741 0.00 0.00 0.00 2.73
136 137 7.230913 TGCAGGTATGAGATTTAGAGGTAGTAC 59.769 40.741 0.00 0.00 0.00 2.73
137 138 7.295340 TGCAGGTATGAGATTTAGAGGTAGTA 58.705 38.462 0.00 0.00 0.00 1.82
138 139 6.136857 TGCAGGTATGAGATTTAGAGGTAGT 58.863 40.000 0.00 0.00 0.00 2.73
139 140 6.266558 ACTGCAGGTATGAGATTTAGAGGTAG 59.733 42.308 19.93 0.00 0.00 3.18
140 141 6.040955 CACTGCAGGTATGAGATTTAGAGGTA 59.959 42.308 19.93 0.00 0.00 3.08
141 142 4.965532 ACTGCAGGTATGAGATTTAGAGGT 59.034 41.667 19.93 0.00 0.00 3.85
142 143 5.295950 CACTGCAGGTATGAGATTTAGAGG 58.704 45.833 19.93 0.00 0.00 3.69
143 144 4.749099 GCACTGCAGGTATGAGATTTAGAG 59.251 45.833 19.93 0.00 0.00 2.43
144 145 4.162131 TGCACTGCAGGTATGAGATTTAGA 59.838 41.667 19.93 0.00 33.32 2.10
145 146 4.445453 TGCACTGCAGGTATGAGATTTAG 58.555 43.478 19.93 0.00 33.32 1.85
146 147 4.486125 TGCACTGCAGGTATGAGATTTA 57.514 40.909 19.93 0.00 33.32 1.40
147 148 3.354948 TGCACTGCAGGTATGAGATTT 57.645 42.857 19.93 0.00 33.32 2.17
159 160 2.903350 CCACTGCACTGCACTGCA 60.903 61.111 18.27 18.27 45.06 4.41
160 161 4.338539 GCCACTGCACTGCACTGC 62.339 66.667 10.99 10.99 37.47 4.40
161 162 3.667282 GGCCACTGCACTGCACTG 61.667 66.667 0.00 1.59 40.13 3.66
162 163 3.719646 TTGGCCACTGCACTGCACT 62.720 57.895 3.88 0.00 40.13 4.40
163 164 2.091102 ATTTGGCCACTGCACTGCAC 62.091 55.000 3.88 0.00 40.13 4.57
164 165 1.401318 AATTTGGCCACTGCACTGCA 61.401 50.000 3.88 3.11 40.13 4.41
165 166 0.249996 AAATTTGGCCACTGCACTGC 60.250 50.000 3.88 0.00 40.13 4.40
166 167 1.606224 GGAAATTTGGCCACTGCACTG 60.606 52.381 3.88 0.00 40.13 3.66
167 168 0.681175 GGAAATTTGGCCACTGCACT 59.319 50.000 3.88 0.00 40.13 4.40
168 169 0.320683 GGGAAATTTGGCCACTGCAC 60.321 55.000 3.88 0.00 40.13 4.57
183 184 1.246056 GCAATGCTGAGTGCTGGGAA 61.246 55.000 0.00 0.00 40.12 3.97
213 214 4.033776 TTGCTCCCCGGCCAAGAG 62.034 66.667 2.24 6.42 0.00 2.85
240 241 9.688592 GGGAACTTACTATACATACATGTGTAC 57.311 37.037 9.11 0.00 41.89 2.90
245 246 7.455008 AGGGAGGGAACTTACTATACATACATG 59.545 40.741 0.00 0.00 44.43 3.21
246 247 7.545546 AGGGAGGGAACTTACTATACATACAT 58.454 38.462 0.00 0.00 44.43 2.29
248 249 6.436847 GGAGGGAGGGAACTTACTATACATAC 59.563 46.154 0.00 0.00 44.43 2.39
250 251 5.404395 GGAGGGAGGGAACTTACTATACAT 58.596 45.833 0.00 0.00 44.43 2.29
251 252 4.388346 GGGAGGGAGGGAACTTACTATACA 60.388 50.000 0.00 0.00 44.43 2.29
252 253 4.140734 AGGGAGGGAGGGAACTTACTATAC 60.141 50.000 0.00 0.00 44.43 1.47
253 254 4.067549 AGGGAGGGAGGGAACTTACTATA 58.932 47.826 0.00 0.00 44.43 1.31
254 255 2.872945 AGGGAGGGAGGGAACTTACTAT 59.127 50.000 0.00 0.00 44.43 2.12
255 256 2.246849 GAGGGAGGGAGGGAACTTACTA 59.753 54.545 0.00 0.00 44.43 1.82
256 257 1.008571 GAGGGAGGGAGGGAACTTACT 59.991 57.143 0.00 0.00 44.43 2.24
257 258 1.008571 AGAGGGAGGGAGGGAACTTAC 59.991 57.143 0.00 0.00 44.43 2.34
258 259 1.008449 CAGAGGGAGGGAGGGAACTTA 59.992 57.143 0.00 0.00 44.43 2.24
259 260 0.252927 CAGAGGGAGGGAGGGAACTT 60.253 60.000 0.00 0.00 44.43 2.66
261 262 0.547954 AACAGAGGGAGGGAGGGAAC 60.548 60.000 0.00 0.00 0.00 3.62
262 263 0.196118 AAACAGAGGGAGGGAGGGAA 59.804 55.000 0.00 0.00 0.00 3.97
263 264 0.252742 GAAACAGAGGGAGGGAGGGA 60.253 60.000 0.00 0.00 0.00 4.20
264 265 0.252927 AGAAACAGAGGGAGGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
265 266 0.908198 CAGAAACAGAGGGAGGGAGG 59.092 60.000 0.00 0.00 0.00 4.30
266 267 1.650528 ACAGAAACAGAGGGAGGGAG 58.349 55.000 0.00 0.00 0.00 4.30
267 268 2.118403 AACAGAAACAGAGGGAGGGA 57.882 50.000 0.00 0.00 0.00 4.20
268 269 2.373502 AGAAACAGAAACAGAGGGAGGG 59.626 50.000 0.00 0.00 0.00 4.30
269 270 3.071602 TGAGAAACAGAAACAGAGGGAGG 59.928 47.826 0.00 0.00 0.00 4.30
270 271 4.061596 GTGAGAAACAGAAACAGAGGGAG 58.938 47.826 0.00 0.00 0.00 4.30
271 272 3.181454 GGTGAGAAACAGAAACAGAGGGA 60.181 47.826 0.00 0.00 0.00 4.20
272 273 3.142174 GGTGAGAAACAGAAACAGAGGG 58.858 50.000 0.00 0.00 0.00 4.30
273 274 3.142174 GGGTGAGAAACAGAAACAGAGG 58.858 50.000 0.00 0.00 0.00 3.69
274 275 4.078639 AGGGTGAGAAACAGAAACAGAG 57.921 45.455 0.00 0.00 0.00 3.35
275 276 5.825593 ATAGGGTGAGAAACAGAAACAGA 57.174 39.130 0.00 0.00 0.00 3.41
276 277 6.884280 AAATAGGGTGAGAAACAGAAACAG 57.116 37.500 0.00 0.00 0.00 3.16
277 278 7.654022 AAAAATAGGGTGAGAAACAGAAACA 57.346 32.000 0.00 0.00 0.00 2.83
278 279 8.297426 CCTAAAAATAGGGTGAGAAACAGAAAC 58.703 37.037 0.00 0.00 33.60 2.78
279 280 8.221944 TCCTAAAAATAGGGTGAGAAACAGAAA 58.778 33.333 2.25 0.00 37.81 2.52
280 281 7.751646 TCCTAAAAATAGGGTGAGAAACAGAA 58.248 34.615 2.25 0.00 37.81 3.02
291 462 4.537288 TCCTTCCGTTCCTAAAAATAGGGT 59.463 41.667 2.25 0.00 37.81 4.34
294 465 7.325694 TGTACTCCTTCCGTTCCTAAAAATAG 58.674 38.462 0.00 0.00 0.00 1.73
298 469 5.070847 AGTTGTACTCCTTCCGTTCCTAAAA 59.929 40.000 0.00 0.00 0.00 1.52
299 470 4.590222 AGTTGTACTCCTTCCGTTCCTAAA 59.410 41.667 0.00 0.00 0.00 1.85
301 472 3.508793 CAGTTGTACTCCTTCCGTTCCTA 59.491 47.826 0.00 0.00 0.00 2.94
302 473 2.299297 CAGTTGTACTCCTTCCGTTCCT 59.701 50.000 0.00 0.00 0.00 3.36
303 474 2.298163 TCAGTTGTACTCCTTCCGTTCC 59.702 50.000 0.00 0.00 0.00 3.62
307 478 3.244112 ACCTTTCAGTTGTACTCCTTCCG 60.244 47.826 0.00 0.00 0.00 4.30
308 479 4.316645 GACCTTTCAGTTGTACTCCTTCC 58.683 47.826 0.00 0.00 0.00 3.46
309 480 4.202326 TGGACCTTTCAGTTGTACTCCTTC 60.202 45.833 0.00 0.00 0.00 3.46
310 481 3.714798 TGGACCTTTCAGTTGTACTCCTT 59.285 43.478 0.00 0.00 0.00 3.36
311 482 3.314693 TGGACCTTTCAGTTGTACTCCT 58.685 45.455 0.00 0.00 0.00 3.69
312 483 3.764237 TGGACCTTTCAGTTGTACTCC 57.236 47.619 0.00 0.00 0.00 3.85
313 484 4.511826 CACTTGGACCTTTCAGTTGTACTC 59.488 45.833 0.00 0.00 0.00 2.59
314 485 4.451900 CACTTGGACCTTTCAGTTGTACT 58.548 43.478 0.00 0.00 0.00 2.73
315 486 3.564225 CCACTTGGACCTTTCAGTTGTAC 59.436 47.826 0.00 0.00 37.39 2.90
317 488 2.241176 TCCACTTGGACCTTTCAGTTGT 59.759 45.455 0.00 0.00 39.78 3.32
322 493 2.661718 GGTTTCCACTTGGACCTTTCA 58.338 47.619 0.00 0.00 45.39 2.69
408 754 5.748630 CACTTTTGAGGCTTAGTTCAAAACC 59.251 40.000 16.64 0.00 44.12 3.27
409 755 6.472486 GTCACTTTTGAGGCTTAGTTCAAAAC 59.528 38.462 16.64 8.96 44.12 2.43
410 756 6.151985 TGTCACTTTTGAGGCTTAGTTCAAAA 59.848 34.615 18.29 18.29 45.75 2.44
429 775 4.102524 TCCATGGACAGTTAAGTTGTCACT 59.897 41.667 11.44 5.55 45.23 3.41
430 776 4.213482 GTCCATGGACAGTTAAGTTGTCAC 59.787 45.833 35.21 6.66 45.23 3.67
444 790 2.040544 CCTTGCGGTGTCCATGGAC 61.041 63.158 33.97 33.97 44.77 4.02
445 791 2.220586 TCCTTGCGGTGTCCATGGA 61.221 57.895 11.44 11.44 35.07 3.41
446 792 2.040544 GTCCTTGCGGTGTCCATGG 61.041 63.158 4.97 4.97 0.00 3.66
448 794 2.047274 CGTCCTTGCGGTGTCCAT 60.047 61.111 0.00 0.00 0.00 3.41
449 795 3.220999 CTCGTCCTTGCGGTGTCCA 62.221 63.158 0.00 0.00 0.00 4.02
450 796 2.227089 ATCTCGTCCTTGCGGTGTCC 62.227 60.000 0.00 0.00 0.00 4.02
451 797 0.802607 GATCTCGTCCTTGCGGTGTC 60.803 60.000 0.00 0.00 0.00 3.67
452 798 1.215647 GATCTCGTCCTTGCGGTGT 59.784 57.895 0.00 0.00 0.00 4.16
453 799 0.526524 GAGATCTCGTCCTTGCGGTG 60.527 60.000 7.04 0.00 0.00 4.94
454 800 1.668101 GGAGATCTCGTCCTTGCGGT 61.668 60.000 16.46 0.00 0.00 5.68
455 801 1.066587 GGAGATCTCGTCCTTGCGG 59.933 63.158 16.46 0.00 0.00 5.69
457 803 0.179097 GGTGGAGATCTCGTCCTTGC 60.179 60.000 16.46 1.50 34.86 4.01
458 804 0.101399 CGGTGGAGATCTCGTCCTTG 59.899 60.000 23.22 11.62 34.86 3.61
459 805 0.034380 TCGGTGGAGATCTCGTCCTT 60.034 55.000 23.22 0.00 34.86 3.36
461 807 1.448922 CCTCGGTGGAGATCTCGTCC 61.449 65.000 16.46 17.90 43.27 4.79
464 810 2.725008 GCCTCGGTGGAGATCTCG 59.275 66.667 16.46 5.93 43.27 4.04
465 811 1.824329 TCGCCTCGGTGGAGATCTC 60.824 63.158 14.75 14.75 43.27 2.75
474 820 3.545124 TTGTTGCCATCGCCTCGGT 62.545 57.895 0.00 0.00 0.00 4.69
475 821 2.745884 TTGTTGCCATCGCCTCGG 60.746 61.111 0.00 0.00 0.00 4.63
485 917 2.288640 AAGATGCAAGCTTCTTGTTGCC 60.289 45.455 18.69 0.00 38.98 4.52
498 930 0.394216 CCATGTCGGGGAAGATGCAA 60.394 55.000 0.00 0.00 0.00 4.08
499 931 1.224315 CCATGTCGGGGAAGATGCA 59.776 57.895 0.00 0.00 0.00 3.96
503 935 2.668632 GTGCCATGTCGGGGAAGA 59.331 61.111 0.00 0.00 34.06 2.87
504 936 2.593468 ATCGTGCCATGTCGGGGAAG 62.593 60.000 0.00 0.00 34.06 3.46
505 937 2.665089 ATCGTGCCATGTCGGGGAA 61.665 57.895 0.00 0.00 34.06 3.97
506 938 3.080765 ATCGTGCCATGTCGGGGA 61.081 61.111 0.00 0.00 34.06 4.81
507 939 2.896854 CATCGTGCCATGTCGGGG 60.897 66.667 0.00 0.00 34.06 5.73
508 940 3.576356 GCATCGTGCCATGTCGGG 61.576 66.667 0.00 0.00 37.42 5.14
509 941 2.108514 AAGCATCGTGCCATGTCGG 61.109 57.895 6.39 0.00 46.52 4.79
510 942 1.061411 CAAGCATCGTGCCATGTCG 59.939 57.895 6.39 0.00 46.52 4.35
511 943 1.019673 ATCAAGCATCGTGCCATGTC 58.980 50.000 6.39 0.00 46.52 3.06
512 944 0.736636 CATCAAGCATCGTGCCATGT 59.263 50.000 6.39 0.00 46.52 3.21
513 945 1.018910 TCATCAAGCATCGTGCCATG 58.981 50.000 6.39 6.68 46.52 3.66
514 946 1.878088 GATCATCAAGCATCGTGCCAT 59.122 47.619 6.39 0.00 46.52 4.40
515 947 1.302366 GATCATCAAGCATCGTGCCA 58.698 50.000 6.39 0.00 46.52 4.92
516 948 1.302366 TGATCATCAAGCATCGTGCC 58.698 50.000 0.00 0.00 46.52 5.01
517 949 2.983166 CTTGATCATCAAGCATCGTGC 58.017 47.619 14.54 2.28 46.03 5.34
526 958 4.916041 ACTGGAGAACCTTGATCATCAA 57.084 40.909 0.00 0.00 34.79 2.57
527 959 4.916041 AACTGGAGAACCTTGATCATCA 57.084 40.909 0.00 0.00 37.04 3.07
528 960 7.337942 ACATAAAACTGGAGAACCTTGATCATC 59.662 37.037 0.00 0.00 37.04 2.92
529 961 7.177878 ACATAAAACTGGAGAACCTTGATCAT 58.822 34.615 0.00 0.00 37.04 2.45
530 962 6.542821 ACATAAAACTGGAGAACCTTGATCA 58.457 36.000 0.00 0.00 37.04 2.92
531 963 6.881602 AGACATAAAACTGGAGAACCTTGATC 59.118 38.462 0.00 0.00 37.04 2.92
532 964 6.784031 AGACATAAAACTGGAGAACCTTGAT 58.216 36.000 0.00 0.00 37.04 2.57
533 965 6.187727 AGACATAAAACTGGAGAACCTTGA 57.812 37.500 0.00 0.00 37.04 3.02
534 966 5.412904 GGAGACATAAAACTGGAGAACCTTG 59.587 44.000 0.00 0.00 37.04 3.61
535 967 5.310857 AGGAGACATAAAACTGGAGAACCTT 59.689 40.000 0.00 0.00 37.04 3.50
536 968 4.846940 AGGAGACATAAAACTGGAGAACCT 59.153 41.667 0.00 0.00 37.04 3.50
537 969 5.167303 AGGAGACATAAAACTGGAGAACC 57.833 43.478 0.00 0.00 0.00 3.62
544 976 6.490040 TGAAAGGGAAAGGAGACATAAAACTG 59.510 38.462 0.00 0.00 0.00 3.16
549 981 5.073144 ACAGTGAAAGGGAAAGGAGACATAA 59.927 40.000 0.00 0.00 0.00 1.90
550 982 4.597507 ACAGTGAAAGGGAAAGGAGACATA 59.402 41.667 0.00 0.00 0.00 2.29
562 994 6.165577 CCCAAAATAAATCACAGTGAAAGGG 58.834 40.000 7.50 6.49 0.00 3.95
577 1009 6.418946 GGTAATCCCAATTTGCCCAAAATAA 58.581 36.000 0.00 0.00 37.51 1.40
622 1054 3.292460 TGCCCATAATTTTTCCTACCCG 58.708 45.455 0.00 0.00 0.00 5.28
629 1061 7.173047 ACACTTGACATTTGCCCATAATTTTTC 59.827 33.333 0.00 0.00 0.00 2.29
632 1064 6.112927 ACACTTGACATTTGCCCATAATTT 57.887 33.333 0.00 0.00 0.00 1.82
641 1078 5.522456 TCAGAAATGACACTTGACATTTGC 58.478 37.500 19.66 12.90 45.32 3.68
647 1084 5.904080 CGAGTTTTCAGAAATGACACTTGAC 59.096 40.000 6.79 0.00 0.00 3.18
650 1358 6.677781 TTCGAGTTTTCAGAAATGACACTT 57.322 33.333 0.00 0.00 0.00 3.16
651 1359 6.867662 ATTCGAGTTTTCAGAAATGACACT 57.132 33.333 0.00 0.00 0.00 3.55
669 1377 7.094118 CCTGAAAATTTGGGTAAGGTAATTCGA 60.094 37.037 0.00 0.00 0.00 3.71
679 1390 5.010820 CGGGTTTACCTGAAAATTTGGGTAA 59.989 40.000 18.56 18.56 45.36 2.85
711 1422 4.327357 CGGCTACATACTTCAGTTGAGTTG 59.673 45.833 0.00 0.00 0.00 3.16
716 1427 3.797256 GCTACGGCTACATACTTCAGTTG 59.203 47.826 0.00 0.00 35.22 3.16
717 1428 3.446161 TGCTACGGCTACATACTTCAGTT 59.554 43.478 0.00 0.00 39.59 3.16
721 1432 4.211374 CCAAATGCTACGGCTACATACTTC 59.789 45.833 0.00 0.00 39.59 3.01
725 1436 3.830744 ACCAAATGCTACGGCTACATA 57.169 42.857 0.00 0.00 39.59 2.29
765 1481 4.202000 CGCCACATTTCAATAATGCCACTA 60.202 41.667 0.00 0.00 0.00 2.74
780 1496 1.066908 CTCCACACAAAACGCCACATT 59.933 47.619 0.00 0.00 0.00 2.71
781 1497 0.667993 CTCCACACAAAACGCCACAT 59.332 50.000 0.00 0.00 0.00 3.21
784 1500 1.098712 GTCCTCCACACAAAACGCCA 61.099 55.000 0.00 0.00 0.00 5.69
788 1504 2.135933 CTCTCGTCCTCCACACAAAAC 58.864 52.381 0.00 0.00 0.00 2.43
790 1506 0.033504 GCTCTCGTCCTCCACACAAA 59.966 55.000 0.00 0.00 0.00 2.83
791 1507 1.112916 TGCTCTCGTCCTCCACACAA 61.113 55.000 0.00 0.00 0.00 3.33
792 1508 1.527433 CTGCTCTCGTCCTCCACACA 61.527 60.000 0.00 0.00 0.00 3.72
793 1509 1.214062 CTGCTCTCGTCCTCCACAC 59.786 63.158 0.00 0.00 0.00 3.82
810 1526 2.430610 GGATGGAGAGCAGCCGACT 61.431 63.158 0.00 0.00 0.00 4.18
811 1527 2.107953 GGATGGAGAGCAGCCGAC 59.892 66.667 0.00 0.00 0.00 4.79
812 1528 2.364186 TGGATGGAGAGCAGCCGA 60.364 61.111 0.00 0.00 0.00 5.54
813 1529 2.202987 GTGGATGGAGAGCAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
814 1530 1.451028 GTGTGGATGGAGAGCAGCC 60.451 63.158 0.00 0.00 0.00 4.85
815 1531 1.451028 GGTGTGGATGGAGAGCAGC 60.451 63.158 0.00 0.00 0.00 5.25
816 1532 1.222936 GGGTGTGGATGGAGAGCAG 59.777 63.158 0.00 0.00 0.00 4.24
831 2106 1.910580 CGCTGGGTAGTGGATTGGGT 61.911 60.000 0.00 0.00 0.00 4.51
839 2114 2.009774 CAAGAAATCCGCTGGGTAGTG 58.990 52.381 0.00 0.00 33.83 2.74
850 2125 1.135859 CGTCTGCACTGCAAGAAATCC 60.136 52.381 4.99 0.00 38.41 3.01
852 2127 0.877071 CCGTCTGCACTGCAAGAAAT 59.123 50.000 4.99 0.00 38.41 2.17
854 2129 0.601046 CTCCGTCTGCACTGCAAGAA 60.601 55.000 4.99 0.00 38.41 2.52
857 2132 2.031012 CCTCCGTCTGCACTGCAA 59.969 61.111 4.99 0.00 38.41 4.08
858 2133 4.687215 GCCTCCGTCTGCACTGCA 62.687 66.667 3.11 3.11 36.92 4.41
861 2136 3.386237 GGAGCCTCCGTCTGCACT 61.386 66.667 0.00 0.00 0.00 4.40
862 2137 3.695606 TGGAGCCTCCGTCTGCAC 61.696 66.667 6.21 0.00 40.17 4.57
865 2140 2.044555 TACGTGGAGCCTCCGTCTG 61.045 63.158 6.21 0.00 40.17 3.51
866 2141 2.045131 GTACGTGGAGCCTCCGTCT 61.045 63.158 6.21 0.00 40.17 4.18
867 2142 2.488820 GTACGTGGAGCCTCCGTC 59.511 66.667 6.21 0.91 40.17 4.79
870 2145 3.450115 AGCGTACGTGGAGCCTCC 61.450 66.667 17.90 2.98 36.96 4.30
871 2146 2.202623 CAGCGTACGTGGAGCCTC 60.203 66.667 17.90 0.00 0.00 4.70
872 2147 2.989824 ACAGCGTACGTGGAGCCT 60.990 61.111 17.90 0.65 0.00 4.58
873 2148 2.506438 GACAGCGTACGTGGAGCC 60.506 66.667 17.90 0.00 0.00 4.70
875 2150 2.202440 CGGACAGCGTACGTGGAG 60.202 66.667 17.90 6.96 34.85 3.86
876 2151 4.409218 GCGGACAGCGTACGTGGA 62.409 66.667 17.90 0.00 42.53 4.02
889 3777 0.537143 ACTGCAAGAAATGTGGCGGA 60.537 50.000 0.00 0.00 37.43 5.54
891 3779 1.005294 GCACTGCAAGAAATGTGGCG 61.005 55.000 0.00 0.00 37.43 5.69
892 3780 0.032403 TGCACTGCAAGAAATGTGGC 59.968 50.000 0.00 0.00 34.76 5.01
900 3788 1.895231 CCTGCACTGCACTGCAAGA 60.895 57.895 19.50 0.46 46.46 3.02
912 3800 4.947147 TGGTTCGGTGGCCTGCAC 62.947 66.667 3.32 0.00 0.00 4.57
918 3806 3.912745 ATTCGGGTGGTTCGGTGGC 62.913 63.158 0.00 0.00 0.00 5.01
920 3808 1.743995 GGATTCGGGTGGTTCGGTG 60.744 63.158 0.00 0.00 0.00 4.94
921 3809 2.218454 TGGATTCGGGTGGTTCGGT 61.218 57.895 0.00 0.00 0.00 4.69
922 3810 1.743995 GTGGATTCGGGTGGTTCGG 60.744 63.158 0.00 0.00 0.00 4.30
923 3811 1.743995 GGTGGATTCGGGTGGTTCG 60.744 63.158 0.00 0.00 0.00 3.95
924 3812 0.958876 GTGGTGGATTCGGGTGGTTC 60.959 60.000 0.00 0.00 0.00 3.62
925 3813 1.074248 GTGGTGGATTCGGGTGGTT 59.926 57.895 0.00 0.00 0.00 3.67
926 3814 0.545787 TAGTGGTGGATTCGGGTGGT 60.546 55.000 0.00 0.00 0.00 4.16
927 3815 0.178068 CTAGTGGTGGATTCGGGTGG 59.822 60.000 0.00 0.00 0.00 4.61
928 3816 0.462047 GCTAGTGGTGGATTCGGGTG 60.462 60.000 0.00 0.00 0.00 4.61
929 3817 0.907704 TGCTAGTGGTGGATTCGGGT 60.908 55.000 0.00 0.00 0.00 5.28
930 3818 0.462047 GTGCTAGTGGTGGATTCGGG 60.462 60.000 0.00 0.00 0.00 5.14
931 3819 0.462047 GGTGCTAGTGGTGGATTCGG 60.462 60.000 0.00 0.00 0.00 4.30
932 3820 0.537188 AGGTGCTAGTGGTGGATTCG 59.463 55.000 0.00 0.00 0.00 3.34
933 3821 2.014068 GCAGGTGCTAGTGGTGGATTC 61.014 57.143 0.00 0.00 38.21 2.52
934 3822 0.035056 GCAGGTGCTAGTGGTGGATT 60.035 55.000 0.00 0.00 38.21 3.01
935 3823 1.604378 GCAGGTGCTAGTGGTGGAT 59.396 57.895 0.00 0.00 38.21 3.41
936 3824 2.942796 CGCAGGTGCTAGTGGTGGA 61.943 63.158 0.00 0.00 39.32 4.02
937 3825 2.434884 CGCAGGTGCTAGTGGTGG 60.435 66.667 0.00 0.00 39.32 4.61
938 3826 3.121030 GCGCAGGTGCTAGTGGTG 61.121 66.667 0.30 0.00 39.32 4.17
939 3827 2.788191 GAAGCGCAGGTGCTAGTGGT 62.788 60.000 11.47 0.00 46.60 4.16
942 3830 2.266055 GGAAGCGCAGGTGCTAGT 59.734 61.111 11.47 0.00 46.60 2.57
1139 4070 3.549900 TTGTGGAGCATGCCTCGCA 62.550 57.895 15.66 16.37 44.86 5.10
1147 4078 2.360350 CTGGGCGTTGTGGAGCAT 60.360 61.111 0.00 0.00 34.54 3.79
1788 5206 1.419387 GGTATGCAGCCAAGGATCTCT 59.581 52.381 5.33 0.00 0.00 3.10
1816 5234 3.152341 CAACACTGATGCTTCCTCCTTT 58.848 45.455 0.00 0.00 0.00 3.11
1829 5259 4.180057 GGTTGTTTCATTTGCAACACTGA 58.820 39.130 0.00 0.00 42.84 3.41
1871 5301 5.730550 ACTTGAAACGTTCTGCTATGGATA 58.269 37.500 0.00 0.00 0.00 2.59
1888 5318 7.060421 ACAATTAGAAACCTCTTGGACTTGAA 58.940 34.615 0.00 0.00 37.04 2.69
1915 5345 7.148289 GCTGTCACATTTCCATATATCATCCAG 60.148 40.741 0.00 0.00 0.00 3.86
2039 5469 2.878406 AGTGGATCAACTGTTTTCACCG 59.122 45.455 0.59 0.00 0.00 4.94
2127 5572 2.857186 TGTAATGCTCAGGCTTGTCA 57.143 45.000 0.00 0.00 39.59 3.58
2156 5601 1.255882 TTTTCGTGCAATCCCAGCAT 58.744 45.000 0.00 0.00 44.79 3.79
2163 5608 3.735240 TGTCTGCAATTTTTCGTGCAATC 59.265 39.130 0.00 0.00 36.81 2.67
2325 5773 3.991121 GGAGGCAATCGTAGCTAATCTTC 59.009 47.826 0.00 0.00 0.00 2.87
2425 5873 2.171003 GCCTATTGCAACCCAGAACTT 58.829 47.619 0.00 0.00 40.77 2.66
2509 5957 7.506938 ACCCCAATAATCGAATTTCTTCATGAT 59.493 33.333 0.00 0.00 0.00 2.45
2527 6020 2.172505 ACTCGCATTGATCACCCCAATA 59.827 45.455 0.00 0.00 33.35 1.90
2571 6082 4.737765 GCAGAAACACTCTTAGATAGCTCG 59.262 45.833 0.00 0.00 29.07 5.03
2647 6158 6.216569 TGATAGATAAGTGCCGAACAGATTC 58.783 40.000 0.00 0.00 0.00 2.52
2691 6202 5.134640 CACATTTCTTGCTCAAAATTTGCG 58.865 37.500 0.00 0.00 0.00 4.85
2776 6317 5.524646 TCAAAAGCTTGGCAATTCTTTCTTG 59.475 36.000 20.49 17.15 33.01 3.02
2826 6370 5.234329 CACCACTATAAATAGGACACGCAAG 59.766 44.000 2.25 0.00 37.86 4.01
2827 6371 5.105269 TCACCACTATAAATAGGACACGCAA 60.105 40.000 2.25 0.00 34.69 4.85
2998 6542 3.652057 ATCAGAACGACCATCCCAATT 57.348 42.857 0.00 0.00 0.00 2.32
3004 6548 2.352960 GAGGCAAATCAGAACGACCATC 59.647 50.000 0.00 0.00 0.00 3.51
3025 6569 4.589216 TCTCAAGGTGGCAAAATTCTTG 57.411 40.909 0.00 0.00 36.95 3.02
3084 6628 5.811399 TCTTTCCGACATTGCGAATATTT 57.189 34.783 0.00 0.00 0.00 1.40
3117 6661 4.952335 ACATGGAATTCTTTTAGCTCCTGG 59.048 41.667 5.23 0.00 0.00 4.45
3298 6842 0.833949 GGTCCATCTCTTCCCCAGAC 59.166 60.000 0.00 0.00 0.00 3.51
3464 7092 1.446907 GGTGCTCCAAGACACATCAG 58.553 55.000 0.00 0.00 38.57 2.90
3471 7099 2.224159 TGGGAGGGTGCTCCAAGAC 61.224 63.158 7.20 0.00 45.06 3.01
3523 7151 7.833786 TGAATTCCAGAATTTCTCTCCAAATG 58.166 34.615 7.05 0.00 40.77 2.32
3529 7157 7.862512 ACTGATGAATTCCAGAATTTCTCTC 57.137 36.000 15.93 3.67 40.77 3.20
3536 7164 4.161001 GCCCAAACTGATGAATTCCAGAAT 59.839 41.667 15.93 0.00 34.65 2.40
3546 7174 0.911769 ATCGAGGCCCAAACTGATGA 59.088 50.000 0.00 0.00 0.00 2.92
3586 7214 2.892373 TCCTTCAAGCGCATAAAACG 57.108 45.000 11.47 0.00 0.00 3.60
3783 7411 1.385631 AGGCATGGAGGGCAGAGAT 60.386 57.895 0.00 0.00 35.46 2.75
3850 7520 5.411361 TCTTTCCATCATAAGACAACAACGG 59.589 40.000 0.00 0.00 0.00 4.44
3880 7556 3.160575 ACCCCCATACCCTCTAACAAT 57.839 47.619 0.00 0.00 0.00 2.71
3897 7573 1.001269 GTGGGAGGCCAAAGTACCC 60.001 63.158 5.01 8.31 40.79 3.69
3901 7577 0.779997 AGATTGTGGGAGGCCAAAGT 59.220 50.000 5.01 0.00 0.00 2.66
3936 7612 7.563888 AATGTTGTATCTTCTGACATCCATG 57.436 36.000 0.00 0.00 31.10 3.66
3955 7697 4.038402 CAGCTCTTCAGGGAACAAAATGTT 59.962 41.667 0.00 0.00 44.37 2.71
3959 7701 2.174639 TCCAGCTCTTCAGGGAACAAAA 59.825 45.455 0.00 0.00 0.00 2.44
4001 7743 7.228314 ACATGTAACTGCAGACTCTTAACTA 57.772 36.000 23.35 0.00 0.00 2.24
4017 7759 9.619316 CTACTGCTAAGATGAGATACATGTAAC 57.381 37.037 10.14 7.39 39.56 2.50
4037 7779 3.557185 TGACGATGATGATTTGCTACTGC 59.443 43.478 0.00 0.00 40.20 4.40
4041 7786 6.149308 ACACTTTTGACGATGATGATTTGCTA 59.851 34.615 0.00 0.00 0.00 3.49
4158 7960 2.024176 TGCACTCCCAGAAGGTAAGA 57.976 50.000 0.00 0.00 36.75 2.10
4245 8050 6.654582 CACATCCCCATATTGTTAATGATCGA 59.345 38.462 0.00 0.00 0.00 3.59
4247 8052 6.350445 GCCACATCCCCATATTGTTAATGATC 60.350 42.308 0.00 0.00 0.00 2.92
4296 8101 2.269241 GGGAAAGGGCAGTCTCCG 59.731 66.667 0.00 0.00 0.00 4.63
4302 8107 1.680314 GGAAGCAGGGAAAGGGCAG 60.680 63.158 0.00 0.00 0.00 4.85
4370 8193 2.159448 AGAGACGTGAGATTTGAGAGCG 60.159 50.000 0.00 0.00 0.00 5.03
4380 8203 3.965379 AGACTAGTGAGAGACGTGAGA 57.035 47.619 0.00 0.00 0.00 3.27
4418 8241 8.924511 ATTGAATCCGTCCACTGATAAATTAT 57.075 30.769 0.00 0.00 0.00 1.28
4426 8249 2.691409 GGATTGAATCCGTCCACTGA 57.309 50.000 8.68 0.00 40.13 3.41
4536 8380 1.815003 CTGAATGAACCTGCAGGGAAC 59.185 52.381 35.42 24.45 40.27 3.62
4539 8386 2.426024 CAATCTGAATGAACCTGCAGGG 59.574 50.000 35.42 18.18 40.27 4.45
4550 8397 7.027760 CACATTGAGTTTCTCCAATCTGAATG 58.972 38.462 0.00 0.00 38.19 2.67
4551 8398 6.152323 CCACATTGAGTTTCTCCAATCTGAAT 59.848 38.462 0.00 0.00 0.00 2.57
4623 8473 4.954118 AGTGTGTGGAGGGCCGGA 62.954 66.667 5.05 0.00 36.79 5.14
4656 8536 0.253044 TGAAGCTTTCCATCCTCCCG 59.747 55.000 0.00 0.00 0.00 5.14
4713 8593 6.294361 TCGGAAAATGTTAGATTCTGGAGA 57.706 37.500 0.00 0.00 31.75 3.71
4773 8910 1.276421 TCCTTGAGAGAAGAAAGGCGG 59.724 52.381 0.00 0.00 40.31 6.13
4803 8940 5.661458 GATCGGATTTCTGGACAGTTAAGA 58.339 41.667 0.00 0.00 0.00 2.10
4848 8985 2.798283 CCGTAGTTTTCTCAGCGAAACA 59.202 45.455 6.34 0.00 41.13 2.83
4880 9017 2.943680 TATCTCAGCGCTGCGACTGC 62.944 60.000 30.60 13.63 43.20 4.40
4882 9019 1.098129 TCTATCTCAGCGCTGCGACT 61.098 55.000 30.60 20.89 0.00 4.18
5144 9886 3.321968 TGTATCTCGCACCTGCTGATTAT 59.678 43.478 7.59 2.38 39.32 1.28
5206 9966 6.707608 AGCACAATGTGTTGTATCGATCATAT 59.292 34.615 15.36 0.00 46.49 1.78
5208 9968 4.877823 AGCACAATGTGTTGTATCGATCAT 59.122 37.500 15.36 0.00 46.49 2.45
5210 9970 4.864916 AGCACAATGTGTTGTATCGATC 57.135 40.909 15.36 0.00 46.49 3.69
5211 9971 5.175127 TGTAGCACAATGTGTTGTATCGAT 58.825 37.500 15.36 2.16 46.49 3.59
5213 9973 4.919677 TGTAGCACAATGTGTTGTATCG 57.080 40.909 15.36 0.00 46.49 2.92
5214 9974 6.421377 TCATGTAGCACAATGTGTTGTATC 57.579 37.500 15.36 0.00 46.49 2.24
5216 9976 5.063312 CGATCATGTAGCACAATGTGTTGTA 59.937 40.000 15.36 3.20 46.49 2.41
5218 9978 4.093261 TCGATCATGTAGCACAATGTGTTG 59.907 41.667 15.36 5.81 41.20 3.33
5219 9979 4.252878 TCGATCATGTAGCACAATGTGTT 58.747 39.130 15.36 11.71 35.75 3.32
5220 9980 3.860641 TCGATCATGTAGCACAATGTGT 58.139 40.909 15.36 4.63 35.75 3.72
5221 9981 6.716898 ATATCGATCATGTAGCACAATGTG 57.283 37.500 9.36 9.36 36.51 3.21
5222 9982 7.658982 AGAAATATCGATCATGTAGCACAATGT 59.341 33.333 0.00 0.00 0.00 2.71
5227 9991 6.183360 GCAGAGAAATATCGATCATGTAGCAC 60.183 42.308 0.00 0.00 0.00 4.40
5320 10350 5.877012 CAGTGGTTGCTCTGTACTATGAATT 59.123 40.000 0.00 0.00 0.00 2.17
5330 10365 1.526917 GCCACAGTGGTTGCTCTGT 60.527 57.895 21.26 0.00 44.32 3.41
5333 10374 1.656441 CAAGCCACAGTGGTTGCTC 59.344 57.895 21.26 3.71 44.50 4.26
5344 10385 6.319911 AGGAGAAAGATAAATAAGCAAGCCAC 59.680 38.462 0.00 0.00 0.00 5.01
5388 10432 5.670341 GCGTGTGTTGGACTGTGAATATTAC 60.670 44.000 0.00 0.00 0.00 1.89
5425 10582 4.808895 CACAAAAGGGGTACAAAAAGAAGC 59.191 41.667 0.00 0.00 0.00 3.86
5457 10620 3.596214 ACGGTGGTGTATCAATCTCAAC 58.404 45.455 0.00 0.00 0.00 3.18
5512 10675 9.748708 ACAAAGAAAATGCACGCAATATATATT 57.251 25.926 1.91 1.91 0.00 1.28
5513 10676 9.398170 GACAAAGAAAATGCACGCAATATATAT 57.602 29.630 0.00 0.00 0.00 0.86
5514 10677 8.401709 TGACAAAGAAAATGCACGCAATATATA 58.598 29.630 0.00 0.00 0.00 0.86
5515 10678 7.257003 TGACAAAGAAAATGCACGCAATATAT 58.743 30.769 0.00 0.00 0.00 0.86
5516 10679 6.616017 TGACAAAGAAAATGCACGCAATATA 58.384 32.000 0.00 0.00 0.00 0.86
5517 10680 5.468592 TGACAAAGAAAATGCACGCAATAT 58.531 33.333 0.00 0.00 0.00 1.28
5518 10681 4.864633 TGACAAAGAAAATGCACGCAATA 58.135 34.783 0.00 0.00 0.00 1.90
5519 10682 3.715495 TGACAAAGAAAATGCACGCAAT 58.285 36.364 0.00 0.00 0.00 3.56
5520 10683 3.114809 CTGACAAAGAAAATGCACGCAA 58.885 40.909 0.00 0.00 0.00 4.85
5818 11077 0.957395 AGCAGCATCCTGTCAAACGG 60.957 55.000 0.00 0.00 41.26 4.44
5820 11079 0.109412 GCAGCAGCATCCTGTCAAAC 60.109 55.000 0.00 0.00 41.26 2.93
5900 11159 9.884636 CGACAATAATAGGAATCCATACCATTA 57.115 33.333 0.61 0.00 0.00 1.90
5918 11177 9.179552 CAATTCAATTTCACTTCACGACAATAA 57.820 29.630 0.00 0.00 0.00 1.40
5922 11181 6.370433 TCAATTCAATTTCACTTCACGACA 57.630 33.333 0.00 0.00 0.00 4.35
5923 11182 7.858052 AATCAATTCAATTTCACTTCACGAC 57.142 32.000 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.