Multiple sequence alignment - TraesCS5B01G569000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G569000 chr5B 100.000 3290 0 0 1 3290 711734242 711737531 0.000000e+00 6076
1 TraesCS5B01G569000 chr5B 91.188 1010 84 4 2285 3290 711963040 711964048 0.000000e+00 1367
2 TraesCS5B01G569000 chr5B 90.030 1013 90 6 2285 3290 711931588 711932596 0.000000e+00 1301
3 TraesCS5B01G569000 chr5B 90.129 851 80 3 2442 3290 711334753 711333905 0.000000e+00 1103
4 TraesCS5B01G569000 chr5B 89.350 723 76 1 1563 2284 711962253 711962975 0.000000e+00 907
5 TraesCS5B01G569000 chr5B 87.237 760 72 12 1539 2284 711353548 711352800 0.000000e+00 843
6 TraesCS5B01G569000 chr5B 92.308 377 20 2 999 1375 711961665 711962032 8.090000e-146 527
7 TraesCS5B01G569000 chr5B 83.757 511 53 10 986 1478 711414170 711413672 1.080000e-124 457
8 TraesCS5B01G569000 chr5B 88.430 363 22 9 31 379 711416623 711416267 1.410000e-113 420
9 TraesCS5B01G569000 chr5B 86.029 408 27 10 1 379 712202126 712202532 8.500000e-111 411
10 TraesCS5B01G569000 chr5B 86.035 401 32 10 1 379 711356484 711356086 3.060000e-110 409
11 TraesCS5B01G569000 chr5B 82.576 396 27 25 382 757 712202572 712202945 8.860000e-81 311
12 TraesCS5B01G569000 chr5B 82.058 379 45 12 941 1317 711930352 711930709 5.340000e-78 302
13 TraesCS5B01G569000 chr5B 83.621 348 30 9 1374 1715 712207203 712207529 5.340000e-78 302
14 TraesCS5B01G569000 chr5B 91.463 82 3 2 374 451 711356057 711355976 3.470000e-20 110
15 TraesCS5B01G569000 chr5D 91.369 1008 83 4 2285 3290 561924477 561925482 0.000000e+00 1376
16 TraesCS5B01G569000 chr5D 91.171 1008 85 4 2285 3290 561897142 561898147 0.000000e+00 1365
17 TraesCS5B01G569000 chr5D 90.227 1013 91 5 2285 3290 552859952 552858941 0.000000e+00 1315
18 TraesCS5B01G569000 chr5D 90.099 909 70 4 2386 3290 551879931 551880823 0.000000e+00 1162
19 TraesCS5B01G569000 chr5D 84.451 1029 132 16 2285 3290 556539850 556538827 0.000000e+00 989
20 TraesCS5B01G569000 chr5D 89.263 801 63 14 1503 2284 561644747 561643951 0.000000e+00 981
21 TraesCS5B01G569000 chr5D 89.290 775 53 9 1540 2284 561923638 561924412 0.000000e+00 944
22 TraesCS5B01G569000 chr5D 85.461 791 86 12 1504 2284 551878925 551879696 0.000000e+00 797
23 TraesCS5B01G569000 chr5D 83.837 761 94 18 1546 2284 556540665 556539912 0.000000e+00 697
24 TraesCS5B01G569000 chr5D 86.151 491 42 9 986 1460 561645339 561644859 1.050000e-139 507
25 TraesCS5B01G569000 chr5D 82.246 552 60 22 916 1456 561923063 561923587 3.010000e-120 442
26 TraesCS5B01G569000 chr5D 87.277 393 34 6 1 379 561646965 561646575 5.040000e-118 435
27 TraesCS5B01G569000 chr5D 88.889 333 25 5 1 322 561893805 561894136 1.840000e-107 399
28 TraesCS5B01G569000 chr5D 77.703 296 31 14 866 1156 552862102 552861837 7.360000e-32 148
29 TraesCS5B01G569000 chr5D 92.771 83 2 2 373 451 561646547 561646465 2.070000e-22 117
30 TraesCS5B01G569000 chr5D 89.157 83 6 3 572 652 561894272 561894353 2.090000e-17 100
31 TraesCS5B01G569000 chr4D 90.873 1008 85 7 2285 3290 509853797 509852795 0.000000e+00 1345
32 TraesCS5B01G569000 chr4D 88.918 758 72 5 1533 2281 509854622 509853868 0.000000e+00 924
33 TraesCS5B01G569000 chr4D 84.532 278 29 5 1189 1465 509854912 509854648 2.520000e-66 263
34 TraesCS5B01G569000 chr4B 90.377 1008 90 7 2285 3290 656880227 656881229 0.000000e+00 1317
35 TraesCS5B01G569000 chr4B 88.351 764 77 5 1527 2281 656879396 656880156 0.000000e+00 907
36 TraesCS5B01G569000 chr4B 85.412 473 52 6 999 1467 656878919 656879378 2.970000e-130 475
37 TraesCS5B01G569000 chr7B 87.768 793 73 15 1507 2284 1037101 1036318 0.000000e+00 905
38 TraesCS5B01G569000 chr7B 87.049 803 81 14 1498 2284 834744 833949 0.000000e+00 885
39 TraesCS5B01G569000 chr7B 91.240 605 47 2 1680 2284 1305173 1305771 0.000000e+00 819
40 TraesCS5B01G569000 chr7B 84.686 542 54 16 947 1474 835239 834713 6.300000e-142 514
41 TraesCS5B01G569000 chr7B 90.000 380 30 1 999 1378 1103514 1103143 4.940000e-133 484
42 TraesCS5B01G569000 chr7B 85.275 455 43 5 999 1453 1304707 1305137 6.480000e-122 448
43 TraesCS5B01G569000 chr7B 86.533 349 39 5 971 1317 891046 890704 8.620000e-101 377
44 TraesCS5B01G569000 chr7B 87.931 232 13 10 1090 1321 1037332 1037116 3.260000e-65 259
45 TraesCS5B01G569000 chr7B 86.842 114 14 1 395 507 1302558 1302671 3.450000e-25 126
46 TraesCS5B01G569000 chr5A 86.856 776 70 11 1533 2281 698692172 698691402 0.000000e+00 839
47 TraesCS5B01G569000 chr5A 86.555 476 44 8 999 1464 698692673 698692208 1.050000e-139 507


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G569000 chr5B 711734242 711737531 3289 False 6076.000000 6076 100.000000 1 3290 1 chr5B.!!$F1 3289
1 TraesCS5B01G569000 chr5B 711333905 711334753 848 True 1103.000000 1103 90.129000 2442 3290 1 chr5B.!!$R1 848
2 TraesCS5B01G569000 chr5B 711961665 711964048 2383 False 933.666667 1367 90.948667 999 3290 3 chr5B.!!$F4 2291
3 TraesCS5B01G569000 chr5B 711930352 711932596 2244 False 801.500000 1301 86.044000 941 3290 2 chr5B.!!$F3 2349
4 TraesCS5B01G569000 chr5B 711352800 711356484 3684 True 454.000000 843 88.245000 1 2284 3 chr5B.!!$R2 2283
5 TraesCS5B01G569000 chr5B 711413672 711416623 2951 True 438.500000 457 86.093500 31 1478 2 chr5B.!!$R3 1447
6 TraesCS5B01G569000 chr5B 712202126 712202945 819 False 361.000000 411 84.302500 1 757 2 chr5B.!!$F5 756
7 TraesCS5B01G569000 chr5D 551878925 551880823 1898 False 979.500000 1162 87.780000 1504 3290 2 chr5D.!!$F1 1786
8 TraesCS5B01G569000 chr5D 561923063 561925482 2419 False 920.666667 1376 87.635000 916 3290 3 chr5D.!!$F3 2374
9 TraesCS5B01G569000 chr5D 556538827 556540665 1838 True 843.000000 989 84.144000 1546 3290 2 chr5D.!!$R2 1744
10 TraesCS5B01G569000 chr5D 552858941 552862102 3161 True 731.500000 1315 83.965000 866 3290 2 chr5D.!!$R1 2424
11 TraesCS5B01G569000 chr5D 561893805 561898147 4342 False 621.333333 1365 89.739000 1 3290 3 chr5D.!!$F2 3289
12 TraesCS5B01G569000 chr5D 561643951 561646965 3014 True 510.000000 981 88.865500 1 2284 4 chr5D.!!$R3 2283
13 TraesCS5B01G569000 chr4D 509852795 509854912 2117 True 844.000000 1345 88.107667 1189 3290 3 chr4D.!!$R1 2101
14 TraesCS5B01G569000 chr4B 656878919 656881229 2310 False 899.666667 1317 88.046667 999 3290 3 chr4B.!!$F1 2291
15 TraesCS5B01G569000 chr7B 833949 835239 1290 True 699.500000 885 85.867500 947 2284 2 chr7B.!!$R3 1337
16 TraesCS5B01G569000 chr7B 1036318 1037332 1014 True 582.000000 905 87.849500 1090 2284 2 chr7B.!!$R4 1194
17 TraesCS5B01G569000 chr7B 1302558 1305771 3213 False 464.333333 819 87.785667 395 2284 3 chr7B.!!$F1 1889
18 TraesCS5B01G569000 chr5A 698691402 698692673 1271 True 673.000000 839 86.705500 999 2281 2 chr5A.!!$R1 1282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 999 0.031585 GGTTTCTGGTTTTGGTCGCC 59.968 55.0 0.0 0.0 0.00 5.54 F
1495 5335 0.179056 CCACGTCACCAACTCCAGTT 60.179 55.0 0.0 0.0 39.12 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 6285 0.324614 CCTTTGGTTTCCCCCATTGC 59.675 55.0 0.00 0.00 33.60 3.56 R
2297 6518 0.874390 CTGTTTTTGCTGCTAGCGGA 59.126 50.0 27.93 12.06 46.26 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.734465 GTCTGTTGCCGATTCCTCAAG 59.266 52.381 0.00 0.00 0.00 3.02
56 63 7.255625 GGGGAGTATTCTCAAAAATATTGGCTC 60.256 40.741 1.51 0.00 42.05 4.70
57 64 7.503902 GGGAGTATTCTCAAAAATATTGGCTCT 59.496 37.037 1.51 0.00 42.05 4.09
58 65 8.907885 GGAGTATTCTCAAAAATATTGGCTCTT 58.092 33.333 1.51 0.00 42.05 2.85
137 159 5.722021 AAATTATCTTTCGGTGCTGGTTT 57.278 34.783 0.00 0.00 0.00 3.27
221 259 9.567776 TTAGTTGTCAATTTCTCCATTAACTGA 57.432 29.630 0.00 0.00 0.00 3.41
298 338 8.407064 TCAAGTTTGCGAAAATTAAGGTAGAAA 58.593 29.630 0.00 0.00 0.00 2.52
299 339 8.690840 CAAGTTTGCGAAAATTAAGGTAGAAAG 58.309 33.333 0.00 0.00 0.00 2.62
342 382 2.049156 TCGCTGGCTGTCAGTTCG 60.049 61.111 11.39 7.03 45.08 3.95
347 387 0.951040 CTGGCTGTCAGTTCGGTTCC 60.951 60.000 0.00 0.00 38.64 3.62
352 392 1.806542 CTGTCAGTTCGGTTCCCATTG 59.193 52.381 0.00 0.00 0.00 2.82
369 409 8.567948 GTTCCCATTGTAGAAACATGTATATGG 58.432 37.037 0.00 5.00 38.16 2.74
373 413 9.288576 CCATTGTAGAAACATGTATATGGTGAT 57.711 33.333 0.00 0.00 35.56 3.06
392 469 5.741982 GGTGATTTTACCGTTATTGATGTGC 59.258 40.000 0.00 0.00 0.00 4.57
440 526 2.945008 TCTTGCAACTTCAGTCACCTTG 59.055 45.455 0.00 0.00 0.00 3.61
468 555 5.230726 CAGTGATGCCTTTCGATTTTAATGC 59.769 40.000 0.00 0.00 0.00 3.56
471 558 5.125257 TGATGCCTTTCGATTTTAATGCTCA 59.875 36.000 0.00 0.00 0.00 4.26
496 583 5.385509 AATTCGTGGATTGGGTTTACTTG 57.614 39.130 0.00 0.00 0.00 3.16
512 599 5.673337 TTACTTGAGCTCACAACATGAAC 57.327 39.130 18.03 0.00 36.69 3.18
515 602 1.875514 TGAGCTCACAACATGAACTGC 59.124 47.619 13.74 0.00 33.73 4.40
516 603 1.875514 GAGCTCACAACATGAACTGCA 59.124 47.619 9.40 0.00 33.73 4.41
522 609 2.819019 CACAACATGAACTGCATACCCA 59.181 45.455 0.00 0.00 34.82 4.51
568 659 2.853731 AAAAACGAAACACCATGCGA 57.146 40.000 0.00 0.00 0.00 5.10
569 660 3.363341 AAAAACGAAACACCATGCGAT 57.637 38.095 0.00 0.00 0.00 4.58
570 661 2.330231 AAACGAAACACCATGCGATG 57.670 45.000 0.00 0.00 0.00 3.84
658 953 6.292389 CAGTATGTGCTATTTCTGTTAGCC 57.708 41.667 0.66 0.00 41.10 3.93
663 958 6.012658 TGTGCTATTTCTGTTAGCCAAAAG 57.987 37.500 0.66 0.00 41.10 2.27
671 966 5.767816 TCTGTTAGCCAAAAGAAAGGAAC 57.232 39.130 0.00 0.00 0.00 3.62
673 968 5.654650 TCTGTTAGCCAAAAGAAAGGAACAA 59.345 36.000 0.00 0.00 0.00 2.83
674 969 6.153680 TCTGTTAGCCAAAAGAAAGGAACAAA 59.846 34.615 0.00 0.00 0.00 2.83
675 970 6.883744 TGTTAGCCAAAAGAAAGGAACAAAT 58.116 32.000 0.00 0.00 0.00 2.32
676 971 6.760770 TGTTAGCCAAAAGAAAGGAACAAATG 59.239 34.615 0.00 0.00 0.00 2.32
679 974 6.226052 AGCCAAAAGAAAGGAACAAATGATC 58.774 36.000 0.00 0.00 0.00 2.92
680 975 5.119125 GCCAAAAGAAAGGAACAAATGATCG 59.881 40.000 0.00 0.00 0.00 3.69
682 977 6.583806 CCAAAAGAAAGGAACAAATGATCGAG 59.416 38.462 0.00 0.00 0.00 4.04
686 981 5.182001 AGAAAGGAACAAATGATCGAGTTGG 59.818 40.000 9.16 0.00 33.79 3.77
689 984 4.827284 AGGAACAAATGATCGAGTTGGTTT 59.173 37.500 9.16 0.00 33.79 3.27
690 985 5.048713 AGGAACAAATGATCGAGTTGGTTTC 60.049 40.000 9.16 0.00 33.79 2.78
692 987 5.362556 ACAAATGATCGAGTTGGTTTCTG 57.637 39.130 9.16 0.00 33.79 3.02
693 988 4.216257 ACAAATGATCGAGTTGGTTTCTGG 59.784 41.667 9.16 0.00 33.79 3.86
699 994 2.685897 TCGAGTTGGTTTCTGGTTTTGG 59.314 45.455 0.00 0.00 0.00 3.28
700 995 2.425668 CGAGTTGGTTTCTGGTTTTGGT 59.574 45.455 0.00 0.00 0.00 3.67
702 997 2.425668 AGTTGGTTTCTGGTTTTGGTCG 59.574 45.455 0.00 0.00 0.00 4.79
704 999 0.031585 GGTTTCTGGTTTTGGTCGCC 59.968 55.000 0.00 0.00 0.00 5.54
706 1001 2.065906 TTTCTGGTTTTGGTCGCCGC 62.066 55.000 0.00 0.00 0.00 6.53
707 1002 4.038080 CTGGTTTTGGTCGCCGCC 62.038 66.667 0.00 0.00 0.00 6.13
721 1966 4.090588 CGCCGGCCAGGGTTCTTA 62.091 66.667 23.46 0.00 41.48 2.10
724 1969 0.896479 GCCGGCCAGGGTTCTTAAAA 60.896 55.000 18.11 0.00 41.48 1.52
726 1971 1.271707 CCGGCCAGGGTTCTTAAAAGA 60.272 52.381 2.24 0.00 35.97 2.52
727 1972 1.810755 CGGCCAGGGTTCTTAAAAGAC 59.189 52.381 2.24 0.00 34.13 3.01
728 1973 2.812613 CGGCCAGGGTTCTTAAAAGACA 60.813 50.000 2.24 0.00 34.13 3.41
750 1995 8.331740 AGACATAGTAGTAGTTGTACCTAACCA 58.668 37.037 0.00 0.00 0.00 3.67
751 1996 8.884124 ACATAGTAGTAGTTGTACCTAACCAA 57.116 34.615 0.00 0.00 0.00 3.67
752 1997 9.312904 ACATAGTAGTAGTTGTACCTAACCAAA 57.687 33.333 0.00 0.00 0.00 3.28
760 2005 9.927668 GTAGTTGTACCTAACCAAATACTTACA 57.072 33.333 0.00 0.00 38.44 2.41
789 3246 9.410556 ACTGTAAATATTTTAGCAAGCAAGTTG 57.589 29.630 5.91 0.00 39.41 3.16
804 3261 4.870363 GCAAGTTGTCTGGCTTAATCAAA 58.130 39.130 4.48 0.00 37.62 2.69
808 3265 7.221452 GCAAGTTGTCTGGCTTAATCAAATATG 59.779 37.037 4.48 0.00 37.62 1.78
809 3266 6.799512 AGTTGTCTGGCTTAATCAAATATGC 58.200 36.000 0.00 0.00 0.00 3.14
813 3270 5.300286 GTCTGGCTTAATCAAATATGCCACT 59.700 40.000 9.16 0.00 45.75 4.00
818 3275 6.818142 GGCTTAATCAAATATGCCACTTGTTT 59.182 34.615 0.00 0.00 42.63 2.83
850 3311 5.181690 AGAAATCGAGCTAGCTAACAGAG 57.818 43.478 19.38 5.41 0.00 3.35
852 3313 4.829064 AATCGAGCTAGCTAACAGAGAG 57.171 45.455 19.38 2.22 0.00 3.20
853 3314 3.269538 TCGAGCTAGCTAACAGAGAGT 57.730 47.619 19.38 0.00 0.00 3.24
854 3315 4.403585 TCGAGCTAGCTAACAGAGAGTA 57.596 45.455 19.38 0.00 0.00 2.59
856 3317 5.369833 TCGAGCTAGCTAACAGAGAGTATT 58.630 41.667 19.38 0.00 0.00 1.89
935 4557 0.252197 CCCACCTACCCTACACAAGC 59.748 60.000 0.00 0.00 0.00 4.01
938 4560 1.628846 CACCTACCCTACACAAGCCTT 59.371 52.381 0.00 0.00 0.00 4.35
941 4563 2.572104 CCTACCCTACACAAGCCTTTCT 59.428 50.000 0.00 0.00 0.00 2.52
942 4564 2.568623 ACCCTACACAAGCCTTTCTG 57.431 50.000 0.00 0.00 0.00 3.02
943 4565 1.168714 CCCTACACAAGCCTTTCTGC 58.831 55.000 0.00 0.00 0.00 4.26
944 4566 1.271597 CCCTACACAAGCCTTTCTGCT 60.272 52.381 0.00 0.00 45.43 4.24
947 4569 0.466922 ACACAAGCCTTTCTGCTGCT 60.467 50.000 0.00 0.00 41.80 4.24
948 4570 0.672342 CACAAGCCTTTCTGCTGCTT 59.328 50.000 0.00 0.00 45.69 3.91
952 4574 0.892814 AGCCTTTCTGCTGCTTCCAC 60.893 55.000 0.00 0.00 40.90 4.02
953 4575 0.892814 GCCTTTCTGCTGCTTCCACT 60.893 55.000 0.00 0.00 0.00 4.00
1006 4687 1.609555 CGGAGTACAGGTAGATGGAGC 59.390 57.143 0.00 0.00 0.00 4.70
1193 4895 4.657824 CCACGTCGGCGACAACCT 62.658 66.667 35.62 14.73 42.00 3.50
1294 4996 0.253894 CATCCATGACAGGCTCCACA 59.746 55.000 0.00 0.00 0.00 4.17
1352 5093 3.764466 CCGCGGTCAAGCTCTCCT 61.764 66.667 19.50 0.00 34.40 3.69
1428 5268 0.326927 CCCGTACACCCAAGACCAAT 59.673 55.000 0.00 0.00 0.00 3.16
1448 5288 2.123428 GGGATGGTGGTGATGCTGC 61.123 63.158 0.00 0.00 0.00 5.25
1449 5289 1.077212 GGATGGTGGTGATGCTGCT 60.077 57.895 0.00 0.00 0.00 4.24
1450 5290 1.381928 GGATGGTGGTGATGCTGCTG 61.382 60.000 0.00 0.00 0.00 4.41
1451 5291 2.001361 GATGGTGGTGATGCTGCTGC 62.001 60.000 8.89 8.89 40.20 5.25
1452 5292 2.360852 GGTGGTGATGCTGCTGCT 60.361 61.111 17.00 2.26 40.48 4.24
1453 5293 2.697761 GGTGGTGATGCTGCTGCTG 61.698 63.158 17.00 0.77 40.48 4.41
1454 5294 3.060000 TGGTGATGCTGCTGCTGC 61.060 61.111 22.51 22.51 40.48 5.25
1455 5295 2.750637 GGTGATGCTGCTGCTGCT 60.751 61.111 27.67 15.76 40.48 4.24
1456 5296 2.485582 GTGATGCTGCTGCTGCTG 59.514 61.111 27.67 16.73 40.48 4.41
1462 5302 2.255554 CTGCTGCTGCTGCTGTTG 59.744 61.111 27.67 13.98 39.81 3.33
1463 5303 3.898627 CTGCTGCTGCTGCTGTTGC 62.899 63.158 27.67 16.48 39.81 4.17
1464 5304 4.719369 GCTGCTGCTGCTGTTGCC 62.719 66.667 22.10 3.77 39.81 4.52
1465 5305 3.292159 CTGCTGCTGCTGTTGCCA 61.292 61.111 17.00 0.00 40.48 4.92
1466 5306 3.268965 CTGCTGCTGCTGTTGCCAG 62.269 63.158 17.00 0.00 41.91 4.85
1467 5307 2.981909 GCTGCTGCTGTTGCCAGA 60.982 61.111 8.53 0.00 41.50 3.86
1468 5308 2.979197 GCTGCTGCTGTTGCCAGAG 61.979 63.158 8.53 0.00 41.50 3.35
1469 5309 2.979197 CTGCTGCTGTTGCCAGAGC 61.979 63.158 0.00 0.00 41.50 4.09
1470 5310 2.981909 GCTGCTGTTGCCAGAGCA 60.982 61.111 9.39 9.39 46.79 4.26
1481 5321 4.969196 CAGAGCACCACGCCACGT 62.969 66.667 0.00 0.00 44.04 4.49
1482 5322 4.664677 AGAGCACCACGCCACGTC 62.665 66.667 0.00 0.00 44.04 4.34
1483 5323 4.961511 GAGCACCACGCCACGTCA 62.962 66.667 0.00 0.00 44.04 4.35
1486 5326 4.901123 CACCACGCCACGTCACCA 62.901 66.667 0.00 0.00 38.32 4.17
1487 5327 4.164087 ACCACGCCACGTCACCAA 62.164 61.111 0.00 0.00 38.32 3.67
1488 5328 3.645975 CCACGCCACGTCACCAAC 61.646 66.667 0.00 0.00 38.32 3.77
1489 5329 2.587753 CACGCCACGTCACCAACT 60.588 61.111 0.00 0.00 38.32 3.16
1490 5330 2.279918 ACGCCACGTCACCAACTC 60.280 61.111 0.00 0.00 33.69 3.01
1491 5331 3.041940 CGCCACGTCACCAACTCC 61.042 66.667 0.00 0.00 0.00 3.85
1492 5332 2.110213 GCCACGTCACCAACTCCA 59.890 61.111 0.00 0.00 0.00 3.86
1493 5333 1.961277 GCCACGTCACCAACTCCAG 60.961 63.158 0.00 0.00 0.00 3.86
1494 5334 1.445942 CCACGTCACCAACTCCAGT 59.554 57.895 0.00 0.00 0.00 4.00
1495 5335 0.179056 CCACGTCACCAACTCCAGTT 60.179 55.000 0.00 0.00 39.12 3.16
1496 5336 1.217882 CACGTCACCAACTCCAGTTC 58.782 55.000 0.00 0.00 35.83 3.01
1497 5337 1.120530 ACGTCACCAACTCCAGTTCT 58.879 50.000 0.00 0.00 35.83 3.01
1498 5338 1.202533 ACGTCACCAACTCCAGTTCTG 60.203 52.381 0.00 0.00 35.83 3.02
1499 5339 1.230324 GTCACCAACTCCAGTTCTGC 58.770 55.000 0.00 0.00 35.83 4.26
1500 5340 1.131638 TCACCAACTCCAGTTCTGCT 58.868 50.000 0.00 0.00 35.83 4.24
1501 5341 2.037251 GTCACCAACTCCAGTTCTGCTA 59.963 50.000 0.00 0.00 35.83 3.49
1673 5751 2.107378 TCAGCAGTACCCCAATCAACAA 59.893 45.455 0.00 0.00 0.00 2.83
1721 5823 6.174720 TCAGACTGGTTCCATGATTATACC 57.825 41.667 1.81 0.00 0.00 2.73
1768 5870 6.378280 AGACACTTTTGAGGAAACTGTCAATT 59.622 34.615 11.24 0.00 44.43 2.32
1798 5919 3.368013 CGATACTGGTGCCACAAAGACTA 60.368 47.826 0.00 0.00 0.00 2.59
2105 6253 4.143115 CGATATATGGAAATGTGACGGTGC 60.143 45.833 0.00 0.00 0.00 5.01
2106 6254 2.779755 TATGGAAATGTGACGGTGCT 57.220 45.000 0.00 0.00 0.00 4.40
2137 6285 0.037605 AACCCTGTTAGCTCCGTTCG 60.038 55.000 0.00 0.00 0.00 3.95
2141 6289 1.359848 CTGTTAGCTCCGTTCGCAAT 58.640 50.000 0.00 0.00 0.00 3.56
2250 6404 3.197766 TGCGAGGTTTGGAGTCTAATGAT 59.802 43.478 0.00 0.00 0.00 2.45
2254 6408 5.874810 CGAGGTTTGGAGTCTAATGATTTCA 59.125 40.000 0.00 0.00 0.00 2.69
2262 6416 9.904198 TTGGAGTCTAATGATTTCATCACATTA 57.096 29.630 0.00 0.00 43.01 1.90
2297 6518 8.097791 TGTATATTTGGTAGCTAAAGGGTTCT 57.902 34.615 0.00 0.00 0.00 3.01
2309 6530 2.579201 GGTTCTCCGCTAGCAGCA 59.421 61.111 16.45 0.00 42.58 4.41
2318 6539 1.400242 CCGCTAGCAGCAAAAACAGTC 60.400 52.381 16.45 0.00 42.58 3.51
2340 6561 3.381908 CGGTAGACTATTGCAGAAGGACT 59.618 47.826 2.84 4.29 0.00 3.85
2438 6728 8.046294 TGCCGTCTTTAAAAATTAGCTATGAA 57.954 30.769 0.00 0.00 0.00 2.57
2543 6833 4.656100 TCATCTCTGGGTTTCAATTGGA 57.344 40.909 5.42 0.00 0.00 3.53
2640 6936 1.512926 CGATTTGGGTGATCGATCCC 58.487 55.000 22.31 20.52 46.93 3.85
2646 6942 1.132527 TGGGTGATCGATCCCCCTATT 60.133 52.381 36.18 0.00 43.96 1.73
2700 6996 2.954318 AGTGTTTCTGCACAAGAATGCT 59.046 40.909 0.00 0.00 44.46 3.79
2945 7265 4.585162 AGTCTGCGTGTCCTATTTATAGCT 59.415 41.667 0.00 0.00 0.00 3.32
2974 7294 5.769662 AGTCTGCACAATCTTTTCCATACAA 59.230 36.000 0.00 0.00 0.00 2.41
2981 7301 7.358352 GCACAATCTTTTCCATACAAGTTTTCG 60.358 37.037 0.00 0.00 0.00 3.46
3005 7325 3.375699 ACTTATCCACCTCCAGTACCTG 58.624 50.000 0.00 0.00 0.00 4.00
3092 7415 6.231211 TCACTTGAAATTCTTGGACCTAGAC 58.769 40.000 5.02 0.00 0.00 2.59
3109 7432 6.496743 ACCTAGACTATTGGTGTGGTAGTTA 58.503 40.000 0.00 0.00 35.52 2.24
3171 7494 3.321396 TGATTTCCATGCTGCAAGTGAAA 59.679 39.130 19.64 19.64 35.30 2.69
3190 7513 4.576053 TGAAATCCACTCCAATATTCGCAG 59.424 41.667 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.972713 TCCCCCTAATCTTGAGGAATCG 59.027 50.000 0.00 0.00 35.99 3.34
119 138 3.410631 TCAAACCAGCACCGAAAGATA 57.589 42.857 0.00 0.00 0.00 1.98
121 140 2.045561 TTCAAACCAGCACCGAAAGA 57.954 45.000 0.00 0.00 0.00 2.52
137 159 9.618890 CTCCCTCAGTTATTAATTCTGATTTCA 57.381 33.333 17.37 7.06 37.54 2.69
221 259 2.239400 GCTAGAAACCAAGCAAAGGGT 58.761 47.619 0.00 0.00 38.63 4.34
298 338 1.694150 TCACTTACCAGCAGCAAGTCT 59.306 47.619 0.00 0.00 30.20 3.24
299 339 2.169832 TCACTTACCAGCAGCAAGTC 57.830 50.000 0.00 0.00 30.20 3.01
342 382 8.567948 CATATACATGTTTCTACAATGGGAACC 58.432 37.037 2.30 0.00 44.11 3.62
347 387 8.675705 TCACCATATACATGTTTCTACAATGG 57.324 34.615 2.30 8.46 40.84 3.16
369 409 5.741982 GGCACATCAATAACGGTAAAATCAC 59.258 40.000 0.00 0.00 0.00 3.06
392 469 8.037758 GGATATATTCAGAACAGGTGTAGATGG 58.962 40.741 0.00 0.00 0.00 3.51
468 555 5.835113 AACCCAATCCACGAATTAATGAG 57.165 39.130 0.00 0.00 0.00 2.90
471 558 7.394923 TCAAGTAAACCCAATCCACGAATTAAT 59.605 33.333 0.00 0.00 0.00 1.40
479 566 3.421844 AGCTCAAGTAAACCCAATCCAC 58.578 45.455 0.00 0.00 0.00 4.02
496 583 1.875514 TGCAGTTCATGTTGTGAGCTC 59.124 47.619 6.82 6.82 43.97 4.09
512 599 5.828859 AGTTAGACTAGTACTGGGTATGCAG 59.171 44.000 11.30 0.00 0.00 4.41
515 602 8.743085 TGTAAGTTAGACTAGTACTGGGTATG 57.257 38.462 11.30 0.00 0.00 2.39
516 603 8.977267 CTGTAAGTTAGACTAGTACTGGGTAT 57.023 38.462 11.30 7.11 0.00 2.73
553 644 2.170738 CCATCGCATGGTGTTTCGT 58.829 52.632 0.00 0.00 45.54 3.85
568 659 2.240667 CCCAAAGAGAGATGACACCCAT 59.759 50.000 0.00 0.00 38.43 4.00
569 660 1.630369 CCCAAAGAGAGATGACACCCA 59.370 52.381 0.00 0.00 0.00 4.51
570 661 1.909302 TCCCAAAGAGAGATGACACCC 59.091 52.381 0.00 0.00 0.00 4.61
587 707 1.897560 CGGCATATTCCTTCCTTCCC 58.102 55.000 0.00 0.00 0.00 3.97
634 774 5.277538 GGCTAACAGAAATAGCACATACTGC 60.278 44.000 7.73 0.00 46.01 4.40
652 793 6.983890 TCATTTGTTCCTTTCTTTTGGCTAAC 59.016 34.615 0.00 0.00 0.00 2.34
658 953 7.141363 ACTCGATCATTTGTTCCTTTCTTTTG 58.859 34.615 0.00 0.00 0.00 2.44
663 958 5.048713 ACCAACTCGATCATTTGTTCCTTTC 60.049 40.000 0.00 0.00 0.00 2.62
671 966 4.216257 ACCAGAAACCAACTCGATCATTTG 59.784 41.667 0.00 0.00 0.00 2.32
673 968 4.021102 ACCAGAAACCAACTCGATCATT 57.979 40.909 0.00 0.00 0.00 2.57
674 969 3.703001 ACCAGAAACCAACTCGATCAT 57.297 42.857 0.00 0.00 0.00 2.45
675 970 3.485463 AACCAGAAACCAACTCGATCA 57.515 42.857 0.00 0.00 0.00 2.92
676 971 4.537015 CAAAACCAGAAACCAACTCGATC 58.463 43.478 0.00 0.00 0.00 3.69
679 974 2.425668 ACCAAAACCAGAAACCAACTCG 59.574 45.455 0.00 0.00 0.00 4.18
680 975 3.488553 CGACCAAAACCAGAAACCAACTC 60.489 47.826 0.00 0.00 0.00 3.01
682 977 2.804647 CGACCAAAACCAGAAACCAAC 58.195 47.619 0.00 0.00 0.00 3.77
686 981 0.317519 CGGCGACCAAAACCAGAAAC 60.318 55.000 0.00 0.00 0.00 2.78
689 984 2.975799 GCGGCGACCAAAACCAGA 60.976 61.111 12.98 0.00 0.00 3.86
690 985 4.038080 GGCGGCGACCAAAACCAG 62.038 66.667 12.98 0.00 0.00 4.00
704 999 3.615509 TTAAGAACCCTGGCCGGCG 62.616 63.158 22.54 9.21 0.00 6.46
706 1001 1.173913 CTTTTAAGAACCCTGGCCGG 58.826 55.000 3.88 3.88 0.00 6.13
707 1002 1.810755 GTCTTTTAAGAACCCTGGCCG 59.189 52.381 0.00 0.00 36.68 6.13
708 1003 2.871453 TGTCTTTTAAGAACCCTGGCC 58.129 47.619 0.00 0.00 36.68 5.36
711 1956 9.804758 CTACTACTATGTCTTTTAAGAACCCTG 57.195 37.037 0.00 0.00 36.68 4.45
712 1957 9.544579 ACTACTACTATGTCTTTTAAGAACCCT 57.455 33.333 0.00 0.00 36.68 4.34
724 1969 8.331740 TGGTTAGGTACAACTACTACTATGTCT 58.668 37.037 0.00 0.00 0.00 3.41
726 1971 8.884124 TTGGTTAGGTACAACTACTACTATGT 57.116 34.615 0.00 0.00 0.00 2.29
763 2008 9.410556 CAACTTGCTTGCTAAAATATTTACAGT 57.589 29.630 0.01 0.00 0.00 3.55
765 2010 9.405587 GACAACTTGCTTGCTAAAATATTTACA 57.594 29.630 0.01 0.00 32.41 2.41
766 2011 9.626045 AGACAACTTGCTTGCTAAAATATTTAC 57.374 29.630 0.01 0.00 32.41 2.01
767 2012 9.624697 CAGACAACTTGCTTGCTAAAATATTTA 57.375 29.630 0.01 0.00 32.41 1.40
769 2014 7.092716 CCAGACAACTTGCTTGCTAAAATATT 58.907 34.615 0.00 0.00 32.41 1.28
771 2016 5.564651 GCCAGACAACTTGCTTGCTAAAATA 60.565 40.000 0.00 0.00 32.92 1.40
776 2021 1.202806 AGCCAGACAACTTGCTTGCTA 60.203 47.619 8.88 0.00 41.37 3.49
789 3246 5.772825 TGGCATATTTGATTAAGCCAGAC 57.227 39.130 0.00 0.00 46.25 3.51
827 3288 5.358442 TCTCTGTTAGCTAGCTCGATTTCTT 59.642 40.000 23.26 0.00 0.00 2.52
829 3290 5.176407 TCTCTGTTAGCTAGCTCGATTTC 57.824 43.478 23.26 7.10 0.00 2.17
832 3293 3.815809 ACTCTCTGTTAGCTAGCTCGAT 58.184 45.455 23.26 0.00 0.00 3.59
835 3296 6.262273 AGACAATACTCTCTGTTAGCTAGCTC 59.738 42.308 23.26 8.67 0.00 4.09
837 3298 6.262273 AGAGACAATACTCTCTGTTAGCTAGC 59.738 42.308 6.62 6.62 44.54 3.42
850 3311 2.857152 CGCAGAAGCAGAGACAATACTC 59.143 50.000 0.00 0.00 42.27 2.59
852 3313 2.346847 CACGCAGAAGCAGAGACAATAC 59.653 50.000 0.00 0.00 42.27 1.89
853 3314 2.610433 CACGCAGAAGCAGAGACAATA 58.390 47.619 0.00 0.00 42.27 1.90
854 3315 1.436600 CACGCAGAAGCAGAGACAAT 58.563 50.000 0.00 0.00 42.27 2.71
856 3317 1.005748 CCACGCAGAAGCAGAGACA 60.006 57.895 0.00 0.00 42.27 3.41
935 4557 2.079925 GTAGTGGAAGCAGCAGAAAGG 58.920 52.381 0.00 0.00 0.00 3.11
938 4560 1.609061 GCAGTAGTGGAAGCAGCAGAA 60.609 52.381 0.00 0.00 0.00 3.02
941 4563 0.036952 GAGCAGTAGTGGAAGCAGCA 60.037 55.000 0.00 0.00 0.00 4.41
942 4564 0.742635 GGAGCAGTAGTGGAAGCAGC 60.743 60.000 0.00 0.00 0.00 5.25
943 4565 0.459237 CGGAGCAGTAGTGGAAGCAG 60.459 60.000 0.00 0.00 0.00 4.24
944 4566 1.591703 CGGAGCAGTAGTGGAAGCA 59.408 57.895 0.00 0.00 0.00 3.91
947 4569 2.978824 GCCGGAGCAGTAGTGGAA 59.021 61.111 5.05 0.00 39.53 3.53
948 4570 3.449227 CGCCGGAGCAGTAGTGGA 61.449 66.667 5.05 0.00 39.83 4.02
979 4643 2.791613 TACCTGTACTCCGCTGGCCA 62.792 60.000 4.71 4.71 0.00 5.36
984 4648 1.214673 TCCATCTACCTGTACTCCGCT 59.785 52.381 0.00 0.00 0.00 5.52
1180 4873 3.723348 GGCAAGGTTGTCGCCGAC 61.723 66.667 10.96 10.96 35.79 4.79
1294 4996 2.032071 GGTGGCGTAGTTGGTGCT 59.968 61.111 0.00 0.00 0.00 4.40
1339 5080 2.185608 GGCGAGGAGAGCTTGACC 59.814 66.667 0.00 0.00 34.52 4.02
1352 5093 2.882876 GAAGAGCACTACGGGCGA 59.117 61.111 0.00 0.00 36.08 5.54
1386 5130 3.513515 AGCAAGAAAAACACTGGAACCAA 59.486 39.130 0.00 0.00 0.00 3.67
1428 5268 0.839277 CAGCATCACCACCATCCCTA 59.161 55.000 0.00 0.00 0.00 3.53
1448 5288 3.292159 TGGCAACAGCAGCAGCAG 61.292 61.111 3.17 0.00 46.17 4.24
1464 5304 4.969196 ACGTGGCGTGGTGCTCTG 62.969 66.667 0.00 0.00 45.43 3.35
1465 5305 4.664677 GACGTGGCGTGGTGCTCT 62.665 66.667 0.00 0.00 41.37 4.09
1466 5306 4.961511 TGACGTGGCGTGGTGCTC 62.962 66.667 0.00 0.00 41.37 4.26
1469 5309 4.901123 TGGTGACGTGGCGTGGTG 62.901 66.667 0.00 0.00 41.37 4.17
1470 5310 4.164087 TTGGTGACGTGGCGTGGT 62.164 61.111 0.00 0.00 41.37 4.16
1471 5311 3.645975 GTTGGTGACGTGGCGTGG 61.646 66.667 0.00 0.00 41.37 4.94
1472 5312 2.587753 AGTTGGTGACGTGGCGTG 60.588 61.111 0.00 0.00 41.37 5.34
1473 5313 2.279918 GAGTTGGTGACGTGGCGT 60.280 61.111 0.00 0.00 45.10 5.68
1474 5314 3.041940 GGAGTTGGTGACGTGGCG 61.042 66.667 0.00 0.00 0.00 5.69
1475 5315 1.961277 CTGGAGTTGGTGACGTGGC 60.961 63.158 0.00 0.00 0.00 5.01
1476 5316 0.179056 AACTGGAGTTGGTGACGTGG 60.179 55.000 0.00 0.00 36.80 4.94
1477 5317 1.202533 AGAACTGGAGTTGGTGACGTG 60.203 52.381 0.00 0.00 38.56 4.49
1478 5318 1.120530 AGAACTGGAGTTGGTGACGT 58.879 50.000 0.00 0.00 38.56 4.34
1479 5319 1.502231 CAGAACTGGAGTTGGTGACG 58.498 55.000 0.00 0.00 38.56 4.35
1480 5320 1.202698 AGCAGAACTGGAGTTGGTGAC 60.203 52.381 0.00 0.00 38.56 3.67
1481 5321 1.131638 AGCAGAACTGGAGTTGGTGA 58.868 50.000 0.00 0.00 38.56 4.02
1482 5322 2.037772 AGTAGCAGAACTGGAGTTGGTG 59.962 50.000 0.00 0.00 38.56 4.17
1483 5323 2.037772 CAGTAGCAGAACTGGAGTTGGT 59.962 50.000 0.00 0.00 42.63 3.67
1484 5324 2.693069 CAGTAGCAGAACTGGAGTTGG 58.307 52.381 0.00 0.00 42.63 3.77
1485 5325 2.072298 GCAGTAGCAGAACTGGAGTTG 58.928 52.381 13.63 0.00 45.75 3.16
1486 5326 1.974236 AGCAGTAGCAGAACTGGAGTT 59.026 47.619 13.63 0.00 45.75 3.01
1487 5327 1.274728 CAGCAGTAGCAGAACTGGAGT 59.725 52.381 13.63 0.00 45.75 3.85
1488 5328 2.006056 GCAGCAGTAGCAGAACTGGAG 61.006 57.143 13.63 0.00 45.75 3.86
1489 5329 0.036952 GCAGCAGTAGCAGAACTGGA 60.037 55.000 13.63 0.00 45.75 3.86
1490 5330 0.036577 AGCAGCAGTAGCAGAACTGG 60.037 55.000 13.63 2.32 45.75 4.00
1492 5332 0.673022 GCAGCAGCAGTAGCAGAACT 60.673 55.000 0.00 0.00 45.49 3.01
1493 5333 0.673022 AGCAGCAGCAGTAGCAGAAC 60.673 55.000 3.17 0.00 45.49 3.01
1494 5334 0.672711 CAGCAGCAGCAGTAGCAGAA 60.673 55.000 3.17 0.00 45.49 3.02
1495 5335 1.079336 CAGCAGCAGCAGTAGCAGA 60.079 57.895 3.17 0.00 45.49 4.26
1496 5336 0.954449 AACAGCAGCAGCAGTAGCAG 60.954 55.000 3.17 0.00 45.49 4.24
1497 5337 1.071987 AACAGCAGCAGCAGTAGCA 59.928 52.632 3.17 0.00 45.49 3.49
1498 5338 1.500844 CAACAGCAGCAGCAGTAGC 59.499 57.895 3.17 0.00 45.49 3.58
1499 5339 1.500844 GCAACAGCAGCAGCAGTAG 59.499 57.895 3.17 0.00 45.49 2.57
1500 5340 1.968017 GGCAACAGCAGCAGCAGTA 60.968 57.895 3.17 0.00 45.49 2.74
1501 5341 3.292936 GGCAACAGCAGCAGCAGT 61.293 61.111 3.17 0.00 45.49 4.40
1523 5393 0.839946 AGCAGAGTTGGAGTTGGTGT 59.160 50.000 0.00 0.00 0.00 4.16
1637 5694 1.202915 TGCTGAGCAAATTGGAGACCA 60.203 47.619 3.81 0.00 34.76 4.02
1688 5787 1.142748 CCAGTCTGAGGCCGATGTC 59.857 63.158 0.00 0.00 0.00 3.06
1721 5823 2.679837 GTCCTGCCATACAATGTGTCTG 59.320 50.000 0.00 0.00 0.00 3.51
1798 5919 7.037586 TGGACCAACTATAGGAAGAACAGAAAT 60.038 37.037 4.43 0.00 0.00 2.17
2105 6253 3.146104 ACAGGGTTTTCCACTGATCAG 57.854 47.619 21.37 21.37 42.91 2.90
2106 6254 3.593442 AACAGGGTTTTCCACTGATCA 57.407 42.857 0.00 0.00 42.91 2.92
2137 6285 0.324614 CCTTTGGTTTCCCCCATTGC 59.675 55.000 0.00 0.00 33.60 3.56
2141 6289 0.471022 GCTTCCTTTGGTTTCCCCCA 60.471 55.000 0.00 0.00 0.00 4.96
2262 6416 8.469309 AGCTACCAAATATACATGCTTCAAAT 57.531 30.769 0.00 0.00 0.00 2.32
2297 6518 0.874390 CTGTTTTTGCTGCTAGCGGA 59.126 50.000 27.93 12.06 46.26 5.54
2318 6539 3.381908 AGTCCTTCTGCAATAGTCTACCG 59.618 47.826 0.00 0.00 0.00 4.02
2340 6561 6.550854 ACTCCATTCCAATGTTTCTGAGAAAA 59.449 34.615 9.51 1.06 34.60 2.29
2438 6728 6.642733 TTCTTCAGATCAAAAGGGAGGTAT 57.357 37.500 0.00 0.00 0.00 2.73
2543 6833 6.183361 TGGCTTGCTGATTAGAGTCTATGATT 60.183 38.462 0.00 0.00 0.00 2.57
2835 7131 4.736126 TCATCAAAGTCCGCAGATTAGA 57.264 40.909 0.00 0.00 0.00 2.10
2887 7207 8.302438 CCTTGAAGCTATCTTTCAAAATCTTGT 58.698 33.333 0.00 0.00 31.49 3.16
2945 7265 4.036734 GGAAAAGATTGTGCAGACTTCACA 59.963 41.667 3.64 3.64 42.10 3.58
2974 7294 5.001874 GGAGGTGGATAAGTTTCGAAAACT 58.998 41.667 13.10 9.44 0.00 2.66
2981 7301 4.470304 AGGTACTGGAGGTGGATAAGTTTC 59.530 45.833 0.00 0.00 37.18 2.78
3005 7325 9.774742 CCACTTATGTAAGCTGAACTAATTTTC 57.225 33.333 0.00 0.00 36.79 2.29
3018 7338 6.743575 ACTGATTTCACCACTTATGTAAGC 57.256 37.500 0.00 0.00 36.79 3.09
3027 7350 6.435292 ACTAGGTAAACTGATTTCACCACT 57.565 37.500 0.00 0.00 30.19 4.00
3028 7351 7.117379 GTGTACTAGGTAAACTGATTTCACCAC 59.883 40.741 0.00 0.00 30.19 4.16
3092 7415 7.417612 GCAAATCATAACTACCACACCAATAG 58.582 38.462 0.00 0.00 0.00 1.73
3109 7432 4.400567 GGCTAAAGTCTTCAGGCAAATCAT 59.599 41.667 4.41 0.00 35.11 2.45
3171 7494 3.845781 ACTGCGAATATTGGAGTGGAT 57.154 42.857 1.09 0.00 36.60 3.41
3190 7513 3.665173 GATGCTTCATCTTTCCGACAC 57.335 47.619 0.00 0.00 37.82 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.