AutoCloner

Multiple sequence alignment - TraesCS5B01G568100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G568100	chr5B	100.000	2693	0	0	1	2693	711407732	711405040	0.000000e+00	4974.0
1	TraesCS5B01G568100	chr5B	90.658	760	62	4	923	1680	711350625	711349873	0.000000e+00	1002.0
2	TraesCS5B01G568100	chr5B	86.321	848	105	10	923	1766	711332845	711332005	0.000000e+00	913.0
3	TraesCS5B01G568100	chr5B	83.742	775	84	14	923	1689	711933618	711934358	0.000000e+00	695.0
4	TraesCS5B01G568100	chr5B	92.228	193	12	2	1869	2061	711349723	711349534	1.230000e-68	270.0
5	TraesCS5B01G568100	chr5B	83.224	304	22	8	1891	2190	711934625	711934903	4.450000e-63	252.0
6	TraesCS5B01G568100	chr5B	78.714	451	28	27	2274	2693	711349274	711348861	3.470000e-59	239.0
7	TraesCS5B01G568100	chr5B	84.681	235	13	10	2008	2223	711331837	711331607	2.100000e-51	213.0
8	TraesCS5B01G568100	chr3B	99.242	923	7	0	1	923	710972565	710973487	0.000000e+00	1666.0
9	TraesCS5B01G568100	chr3B	99.133	923	8	0	1	923	710960564	710961486	0.000000e+00	1661.0
10	TraesCS5B01G568100	chr6B	98.919	925	9	1	1	924	674953848	674952924	0.000000e+00	1652.0
11	TraesCS5B01G568100	chr7B	98.592	923	13	0	1	923	578993343	578992421	0.000000e+00	1633.0
12	TraesCS5B01G568100	chr7B	84.509	1304	119	41	923	2167	887702	886423	0.000000e+00	1212.0
13	TraesCS5B01G568100	chr7B	84.322	1231	114	37	923	2094	883231	882021	0.000000e+00	1131.0
14	TraesCS5B01G568100	chr7B	84.726	1041	113	25	923	1930	1034163	1033136	0.000000e+00	1000.0
15	TraesCS5B01G568100	chr7B	86.483	762	91	7	923	1682	1307887	1308638	0.000000e+00	826.0
16	TraesCS5B01G568100	chr7B	84.235	869	81	18	958	1804	849512	850346	0.000000e+00	795.0
17	TraesCS5B01G568100	chr7B	84.715	772	89	10	923	1682	1351401	1352155	0.000000e+00	745.0
18	TraesCS5B01G568100	chr7B	89.273	289	18	9	1942	2223	1033041	1032759	1.530000e-92	350.0
19	TraesCS5B01G568100	chr7B	80.942	446	35	17	2279	2693	1032592	1032166	9.370000e-80	307.0
20	TraesCS5B01G568100	chr7B	92.727	165	12	0	2059	2223	829738	829574	3.470000e-59	239.0
21	TraesCS5B01G568100	chr7B	86.061	165	8	9	1899	2057	829982	829827	2.150000e-36	163.0
22	TraesCS5B01G568100	chr7B	86.400	125	11	2	923	1047	1101627	1101509	6.050000e-27	132.0
23	TraesCS5B01G568100	chr7B	78.448	232	16	18	2489	2693	829274	829050	1.310000e-23	121.0
24	TraesCS5B01G568100	chr7B	91.358	81	5	1	2347	2425	1308753	1308833	2.830000e-20	110.0
25	TraesCS5B01G568100	chr7B	91.358	81	5	1	2347	2425	1352273	1352353	2.830000e-20	110.0
26	TraesCS5B01G568100	chr7B	100.000	32	0	0	2223	2254	1100230	1100199	2.900000e-05	60.2
27	TraesCS5B01G568100	chr7D	98.903	638	7	0	1	638	20631795	20631158	0.000000e+00	1140.0
28	TraesCS5B01G568100	chr7D	98.529	272	4	0	652	923	20631090	20630819	5.210000e-132	481.0
29	TraesCS5B01G568100	chr5D	98.903	638	7	0	1	638	550600167	550599530	0.000000e+00	1140.0
30	TraesCS5B01G568100	chr5D	85.714	847	93	12	923	1766	551882286	551883107	0.000000e+00	869.0
31	TraesCS5B01G568100	chr5D	84.930	856	105	12	923	1766	561899163	561900006	0.000000e+00	845.0
32	TraesCS5B01G568100	chr5D	83.652	838	96	13	923	1747	561926579	561927388	0.000000e+00	750.0
33	TraesCS5B01G568100	chr5D	97.818	275	4	1	652	924	550599462	550599188	8.730000e-130	473.0
34	TraesCS5B01G568100	chr5D	83.287	359	49	5	1393	1747	561641335	561640984	1.200000e-83	320.0
35	TraesCS5B01G568100	chr5D	88.043	276	21	7	1859	2123	552856966	552856692	1.560000e-82	316.0
36	TraesCS5B01G568100	chr5D	90.155	193	15	2	2031	2223	551883139	551883327	5.760000e-62	248.0
37	TraesCS5B01G568100	chr5D	79.208	404	26	21	2257	2626	552856497	552856118	7.500000e-56	228.0
38	TraesCS5B01G568100	chr5D	82.468	154	14	6	2286	2427	551883479	551883631	3.640000e-24	122.0
39	TraesCS5B01G568100	chr5D	97.561	41	1	0	1764	1804	561900023	561900063	1.340000e-08	71.3
40	TraesCS5B01G568100	chr6D	98.746	638	8	0	1	638	17160351	17160988	0.000000e+00	1134.0
41	TraesCS5B01G568100	chr6D	98.119	638	11	1	1	638	472122462	472121826	0.000000e+00	1110.0
42	TraesCS5B01G568100	chr6D	97.426	272	7	0	652	923	472121758	472121487	5.250000e-127	464.0
43	TraesCS5B01G568100	chr4B	98.433	638	10	0	1	638	8933294	8933931	0.000000e+00	1123.0
44	TraesCS5B01G568100	chr4D	84.401	827	106	13	923	1745	509851941	509851134	0.000000e+00	791.0
45	TraesCS5B01G568100	chr6A	99.296	426	3	0	499	924	593441586	593442011	0.000000e+00	771.0
46	TraesCS5B01G568100	chr1B	98.535	273	4	0	652	924	22640610	22640338	1.450000e-132	483.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G568100	chr5B	711405040	711407732	2692	True	4974.000000	4974	100.000000	1	2693	1	chr5B.!!$R1	2692
1	TraesCS5B01G568100	chr5B	711331607	711332845	1238	True	563.000000	913	85.501000	923	2223	2	chr5B.!!$R2	1300
2	TraesCS5B01G568100	chr5B	711348861	711350625	1764	True	503.666667	1002	87.200000	923	2693	3	chr5B.!!$R3	1770
3	TraesCS5B01G568100	chr5B	711933618	711934903	1285	False	473.500000	695	83.483000	923	2190	2	chr5B.!!$F1	1267
4	TraesCS5B01G568100	chr3B	710972565	710973487	922	False	1666.000000	1666	99.242000	1	923	1	chr3B.!!$F2	922
5	TraesCS5B01G568100	chr3B	710960564	710961486	922	False	1661.000000	1661	99.133000	1	923	1	chr3B.!!$F1	922
6	TraesCS5B01G568100	chr6B	674952924	674953848	924	True	1652.000000	1652	98.919000	1	924	1	chr6B.!!$R1	923
7	TraesCS5B01G568100	chr7B	578992421	578993343	922	True	1633.000000	1633	98.592000	1	923	1	chr7B.!!$R1	922
8	TraesCS5B01G568100	chr7B	882021	887702	5681	True	1171.500000	1212	84.415500	923	2167	2	chr7B.!!$R3	1244
9	TraesCS5B01G568100	chr7B	849512	850346	834	False	795.000000	795	84.235000	958	1804	1	chr7B.!!$F1	846
10	TraesCS5B01G568100	chr7B	1032166	1034163	1997	True	552.333333	1000	84.980333	923	2693	3	chr7B.!!$R4	1770
11	TraesCS5B01G568100	chr7B	1307887	1308833	946	False	468.000000	826	88.920500	923	2425	2	chr7B.!!$F2	1502
12	TraesCS5B01G568100	chr7B	1351401	1352353	952	False	427.500000	745	88.036500	923	2425	2	chr7B.!!$F3	1502
13	TraesCS5B01G568100	chr7D	20630819	20631795	976	True	810.500000	1140	98.716000	1	923	2	chr7D.!!$R1	922
14	TraesCS5B01G568100	chr5D	550599188	550600167	979	True	806.500000	1140	98.360500	1	924	2	chr5D.!!$R2	923
15	TraesCS5B01G568100	chr5D	561926579	561927388	809	False	750.000000	750	83.652000	923	1747	1	chr5D.!!$F1	824
16	TraesCS5B01G568100	chr5D	561899163	561900063	900	False	458.150000	845	91.245500	923	1804	2	chr5D.!!$F3	881
17	TraesCS5B01G568100	chr5D	551882286	551883631	1345	False	413.000000	869	86.112333	923	2427	3	chr5D.!!$F2	1504
18	TraesCS5B01G568100	chr5D	552856118	552856966	848	True	272.000000	316	83.625500	1859	2626	2	chr5D.!!$R3	767
19	TraesCS5B01G568100	chr6D	17160351	17160988	637	False	1134.000000	1134	98.746000	1	638	1	chr6D.!!$F1	637
20	TraesCS5B01G568100	chr6D	472121487	472122462	975	True	787.000000	1110	97.772500	1	923	2	chr6D.!!$R1	922
21	TraesCS5B01G568100	chr4B	8933294	8933931	637	False	1123.000000	1123	98.433000	1	638	1	chr4B.!!$F1	637
22	TraesCS5B01G568100	chr4D	509851134	509851941	807	True	791.000000	791	84.401000	923	1745	1	chr4D.!!$R1	822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
953	1011	1.280421	GGAGGACAAGTCATTGCTCCT	59.72	52.381	12.94	10.09	43.57	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2472	2971	0.764369	TCTGCACCACCAGGACTCTT	60.764	55.0	0.0	0.0	38.69	2.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
281	282	2.576648	GCCCCCTAGAAAGAAGAGGAAA	59.423	50.000	0.00	0.00	31.45	3.13
569	570	3.871594	GGTGGTATGTTGCTAGTTGCTAG	59.128	47.826	0.00	0.00	43.37	3.42
953	1011	1.280421	GGAGGACAAGTCATTGCTCCT	59.720	52.381	12.94	10.09	43.57	3.69
954	1012	2.354259	GAGGACAAGTCATTGCTCCTG	58.646	52.381	13.30	0.00	42.25	3.86
955	1013	1.980765	AGGACAAGTCATTGCTCCTGA	59.019	47.619	2.29	0.00	41.44	3.86
956	1014	2.373169	AGGACAAGTCATTGCTCCTGAA	59.627	45.455	2.29	0.00	41.44	3.02
1389	1462	2.227388	CCTCCACACACTTGAATTCTGC	59.773	50.000	7.05	0.00	0.00	4.26
1437	1513	2.611518	GAAGAGCAAGAGAAAGCGCTA	58.388	47.619	12.05	0.00	40.01	4.26
1473	1549	6.448369	TCCCTCCAGAATCTAAGTTTTTCA	57.552	37.500	0.00	0.00	0.00	2.69
1482	1558	2.554032	TCTAAGTTTTTCAGGCTGCTGC	59.446	45.455	10.34	7.10	38.76	5.25
1523	1599	2.711542	AGGGTTACATCGCCTTTCTTG	58.288	47.619	0.00	0.00	0.00	3.02
1553	1629	1.523934	GTTACGTGTCTTTGGGTGTCG	59.476	52.381	0.00	0.00	0.00	4.35
1562	1638	2.637872	TCTTTGGGTGTCGAGAAATCCT	59.362	45.455	0.00	0.00	0.00	3.24
1618	1700	8.768957	TCTGAGAAAACTAGAGATGAATTGTG	57.231	34.615	0.00	0.00	0.00	3.33
1640	1722	1.270274	CAGCGCTGAGATAGATGAGCT	59.730	52.381	33.66	0.00	0.00	4.09
1645	1727	5.417266	AGCGCTGAGATAGATGAGCTAATTA	59.583	40.000	10.39	0.00	31.66	1.40
1647	1729	6.587990	GCGCTGAGATAGATGAGCTAATTAAA	59.412	38.462	0.00	0.00	31.66	1.52
1699	1791	4.988540	CGTCTCTTGAAGGATAACAACACA	59.011	41.667	0.00	0.00	0.00	3.72
1700	1792	5.119279	CGTCTCTTGAAGGATAACAACACAG	59.881	44.000	0.00	0.00	0.00	3.66
1714	1810	3.377172	ACAACACAGAAGGTAACACTTGC	59.623	43.478	0.00	0.00	41.41	4.01
1728	1831	0.107165	ACTTGCCGCCTCCCTATTTC	60.107	55.000	0.00	0.00	0.00	2.17
1742	1845	8.364894	GCCTCCCTATTTCTTTTGTTTTTCTAA	58.635	33.333	0.00	0.00	0.00	2.10
1811	1981	9.766277	CAAATCTTACAGACTAGCAATCTTTTC	57.234	33.333	0.00	0.00	0.00	2.29
1824	1994	5.067674	AGCAATCTTTTCTGCACACAAGTTA	59.932	36.000	0.00	0.00	41.17	2.24
1852	2022	2.199291	GCACATTAATCAGCAGGTGC	57.801	50.000	9.68	9.68	43.78	5.01
1936	2144	1.153958	GCAAGTCAAATCTGCCGGC	60.154	57.895	22.73	22.73	0.00	6.13
1937	2145	1.865788	GCAAGTCAAATCTGCCGGCA	61.866	55.000	30.59	30.59	0.00	5.69
1965	2253	6.072119	GGTTAGTACCTCCAGAACCAAATTTG	60.072	42.308	11.40	11.40	41.53	2.32
2098	2413	0.943673	CATTCACAGTCCAACGCACA	59.056	50.000	0.00	0.00	0.00	4.57
2139	2459	5.533528	TCTTTTTGTACCCCTTTTCTGCTAC	59.466	40.000	0.00	0.00	0.00	3.58
2140	2460	2.754946	TGTACCCCTTTTCTGCTACG	57.245	50.000	0.00	0.00	0.00	3.51
2141	2461	1.972795	TGTACCCCTTTTCTGCTACGT	59.027	47.619	0.00	0.00	0.00	3.57
2142	2462	3.164268	TGTACCCCTTTTCTGCTACGTA	58.836	45.455	0.00	0.00	0.00	3.57
2174	2505	5.876460	TGAGATTGATACACCACTGATGTTG	59.124	40.000	0.00	0.00	0.00	3.33
2175	2506	5.188434	AGATTGATACACCACTGATGTTGG	58.812	41.667	0.00	0.00	0.00	3.77
2194	2525	9.964303	GATGTTGGTTTTCATAATATATGTGCA	57.036	29.630	0.00	0.00	0.00	4.57
2216	2547	2.030893	TGCATTTTCTTCGTCAGGCTTG	60.031	45.455	0.00	0.00	0.00	4.01
2331	2818	8.723942	AGAGGTATTTAATTGCTGTTACTCAG	57.276	34.615	0.00	0.00	46.12	3.35
2344	2836	7.642669	TGCTGTTACTCAGAAAGAAGATTTTG	58.357	34.615	0.00	0.00	46.27	2.44
2409	2908	9.586732	TTATTTCCTCTTTCTTGAATCCTTTCA	57.413	29.630	0.00	0.00	40.09	2.69
2413	2912	9.586732	TTCCTCTTTCTTGAATCCTTTCATTTA	57.413	29.630	0.00	0.00	41.38	1.40
2428	2927	4.439305	TCATTTAACAGGTTGATGCTGC	57.561	40.909	0.00	0.00	0.00	5.25
2429	2928	3.193267	TCATTTAACAGGTTGATGCTGCC	59.807	43.478	0.00	0.00	0.00	4.85
2430	2929	2.584835	TTAACAGGTTGATGCTGCCT	57.415	45.000	0.00	0.00	0.00	4.75
2443	2942	0.314935	GCTGCCTGCTGCTTTGTAAA	59.685	50.000	12.97	0.00	42.00	2.01
2444	2943	1.067354	GCTGCCTGCTGCTTTGTAAAT	60.067	47.619	12.97	0.00	42.00	1.40
2445	2944	2.611224	GCTGCCTGCTGCTTTGTAAATT	60.611	45.455	12.97	0.00	42.00	1.82
2446	2945	3.367292	GCTGCCTGCTGCTTTGTAAATTA	60.367	43.478	12.97	0.00	42.00	1.40
2472	2971	2.293170	CAGCTCTCTGATGTACTCCGA	58.707	52.381	0.00	0.00	42.95	4.55
2506	3028	4.104579	TGGTGCAGAATGGTATGGATGTAT	59.895	41.667	0.00	0.00	35.86	2.29
2507	3029	5.309282	TGGTGCAGAATGGTATGGATGTATA	59.691	40.000	0.00	0.00	35.86	1.47
2508	3030	6.012596	TGGTGCAGAATGGTATGGATGTATAT	60.013	38.462	0.00	0.00	35.86	0.86
2511	3033	9.618890	GTGCAGAATGGTATGGATGTATATTAT	57.381	33.333	0.00	0.00	35.86	1.28
2512	3034	9.836864	TGCAGAATGGTATGGATGTATATTATC	57.163	33.333	0.00	0.00	35.86	1.75
2513	3035	8.982685	GCAGAATGGTATGGATGTATATTATCG	58.017	37.037	0.00	0.00	35.86	2.92
2540	3103	9.912634	TGAAGTGAAATGAAATTGAATTCTACC	57.087	29.630	7.05	0.00	36.10	3.18
2567	3133	8.105829	AGAGAGAAGAGAATGCTTTCCAATTTA	58.894	33.333	8.62	0.00	31.84	1.40
2613	3191	6.064717	GGCCTGATACTGAATTATTCCTGTT	58.935	40.000	0.00	0.00	0.00	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
569	570	3.005791	ACATAACAGAGCAAAGTTTGGCC	59.994	43.478	17.11	0.00	0.00	5.36
953	1011	7.199766	GCCACATCCGAATATTGTTAATTTCA	58.800	34.615	0.00	0.00	0.00	2.69
954	1012	6.359617	CGCCACATCCGAATATTGTTAATTTC	59.640	38.462	0.00	0.00	0.00	2.17
955	1013	6.038825	TCGCCACATCCGAATATTGTTAATTT	59.961	34.615	0.00	0.00	0.00	1.82
956	1014	5.529430	TCGCCACATCCGAATATTGTTAATT	59.471	36.000	0.00	0.00	0.00	1.40
1389	1462	2.799412	GCTTTCCGTGCTCTCATCATAG	59.201	50.000	0.00	0.00	0.00	2.23
1437	1513	1.305718	GAGGGAGGTGAGGAGCTGT	60.306	63.158	0.00	0.00	0.00	4.40
1482	1558	1.139654	TGAGGAAGGGATTGCAGATCG	59.860	52.381	0.00	0.00	0.00	3.69
1523	1599	3.919223	AGACACGTAACTCCTTGAGAC	57.081	47.619	0.00	0.00	33.32	3.36
1553	1629	1.134401	TGGGCATCGACAGGATTTCTC	60.134	52.381	0.00	0.00	31.28	2.87
1562	1638	2.989639	CCTCCTTGGGCATCGACA	59.010	61.111	0.00	0.00	0.00	4.35
1593	1669	7.821359	CCACAATTCATCTCTAGTTTTCTCAGA	59.179	37.037	0.00	0.00	0.00	3.27
1618	1700	0.316522	TCATCTATCTCAGCGCTGCC	59.683	55.000	32.44	0.00	0.00	4.85
1647	1729	3.960102	TCTGGCTGGTTCTGTTGATTTTT	59.040	39.130	0.00	0.00	0.00	1.94
1656	1738	2.874701	CGGATAAATCTGGCTGGTTCTG	59.125	50.000	0.00	0.00	0.00	3.02
1664	1746	4.060038	TCAAGAGACGGATAAATCTGGC	57.940	45.455	3.92	0.02	41.69	4.85
1694	1785	2.949644	GGCAAGTGTTACCTTCTGTGTT	59.050	45.455	0.00	0.00	0.00	3.32
1699	1791	0.605589	GGCGGCAAGTGTTACCTTCT	60.606	55.000	3.07	0.00	0.00	2.85
1700	1792	0.605589	AGGCGGCAAGTGTTACCTTC	60.606	55.000	13.08	0.00	0.00	3.46
1714	1810	2.723273	ACAAAAGAAATAGGGAGGCGG	58.277	47.619	0.00	0.00	0.00	6.13
1742	1845	5.652452	AGGCGAATAAACCTTGCTTTAGAAT	59.348	36.000	0.00	0.00	29.74	2.40
1747	1853	3.153919	TGAGGCGAATAAACCTTGCTTT	58.846	40.909	0.00	0.00	36.05	3.51
1811	1981	4.539870	CAGGTTTGATAACTTGTGTGCAG	58.460	43.478	0.00	0.00	36.79	4.41
1824	1994	4.463539	TGCTGATTAATGTGCAGGTTTGAT	59.536	37.500	7.60	0.00	0.00	2.57
1851	2021	2.172593	TGCGTTGCAAAATATCTCGC	57.827	45.000	18.08	18.08	41.98	5.03
1965	2253	9.153721	TGAATGCAATCAAAAATTAAGGATCAC	57.846	29.630	0.85	0.00	0.00	3.06
2016	2316	6.039159	GCAAGCAGGAGAAAGATAAATAAGCT	59.961	38.462	0.00	0.00	0.00	3.74
2098	2413	7.840931	ACAAAAAGAAGTGGATGAAAAGAAGT	58.159	30.769	0.00	0.00	0.00	3.01
2139	2459	8.135529	TGGTGTATCAATCTCAAGTCTAATACG	58.864	37.037	0.00	0.00	0.00	3.06
2140	2460	9.250624	GTGGTGTATCAATCTCAAGTCTAATAC	57.749	37.037	0.00	0.00	0.00	1.89
2141	2461	9.201989	AGTGGTGTATCAATCTCAAGTCTAATA	57.798	33.333	0.00	0.00	0.00	0.98
2142	2462	7.984050	CAGTGGTGTATCAATCTCAAGTCTAAT	59.016	37.037	0.00	0.00	0.00	1.73
2174	2505	8.991243	ATGCATGCACATATATTATGAAAACC	57.009	30.769	25.37	0.00	0.00	3.27
2190	2521	2.912967	CTGACGAAGAAAATGCATGCAC	59.087	45.455	25.37	10.53	0.00	4.57
2194	2525	2.440409	AGCCTGACGAAGAAAATGCAT	58.560	42.857	0.00	0.00	0.00	3.96
2300	2779	7.396540	ACAGCAATTAAATACCTCTTCCTTG	57.603	36.000	0.00	0.00	0.00	3.61
2301	2780	8.957466	GTAACAGCAATTAAATACCTCTTCCTT	58.043	33.333	0.00	0.00	0.00	3.36
2409	2908	3.194116	CAGGCAGCATCAACCTGTTAAAT	59.806	43.478	0.00	0.00	44.91	1.40
2413	2912	2.649831	CAGGCAGCATCAACCTGTT	58.350	52.632	0.00	0.00	44.91	3.16
2443	2942	7.108847	AGTACATCAGAGAGCTGCTTTTTAAT	58.891	34.615	2.53	0.00	42.01	1.40
2444	2943	6.467677	AGTACATCAGAGAGCTGCTTTTTAA	58.532	36.000	2.53	0.00	42.01	1.52
2445	2944	6.042638	AGTACATCAGAGAGCTGCTTTTTA	57.957	37.500	2.53	0.00	42.01	1.52
2446	2945	4.904241	AGTACATCAGAGAGCTGCTTTTT	58.096	39.130	2.53	0.00	42.01	1.94
2472	2971	0.764369	TCTGCACCACCAGGACTCTT	60.764	55.000	0.00	0.00	38.69	2.85
2479	2986	2.019249	CATACCATTCTGCACCACCAG	58.981	52.381	0.00	0.00	0.00	4.00
2511	3033	8.352201	AGAATTCAATTTCATTTCACTTCACGA	58.648	29.630	8.44	0.00	0.00	4.35
2512	3034	8.511465	AGAATTCAATTTCATTTCACTTCACG	57.489	30.769	8.44	0.00	0.00	4.35
2515	3037	9.912634	TGGTAGAATTCAATTTCATTTCACTTC	57.087	29.630	8.44	0.00	0.00	3.01
2516	3038	9.918630	CTGGTAGAATTCAATTTCATTTCACTT	57.081	29.630	8.44	0.00	0.00	3.16
2517	3039	9.300681	TCTGGTAGAATTCAATTTCATTTCACT	57.699	29.630	8.44	0.00	0.00	3.41
2540	3103	4.829968	TGGAAAGCATTCTCTTCTCTCTG	58.170	43.478	1.19	0.00	35.79	3.35
2567	3133	7.940688	AGGCCATTTTTCAAGAAAGATTCAAAT	59.059	29.630	5.01	0.00	0.00	2.32
2613	3191	3.853104	CATAGGTTGCTTCGGTCCA	57.147	52.632	0.00	0.00	0.00	4.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.