Multiple sequence alignment - TraesCS5B01G567700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G567700 chr5B 100.000 3113 0 0 1 3113 711334187 711331075 0.000000e+00 5749.0
1 TraesCS5B01G567700 chr5B 85.977 1469 146 21 784 2244 711351177 711349761 0.000000e+00 1517.0
2 TraesCS5B01G567700 chr5B 84.225 1122 133 17 1072 2183 711738309 711739396 0.000000e+00 1051.0
3 TraesCS5B01G567700 chr5B 90.561 784 69 3 1 783 711963766 711964545 0.000000e+00 1033.0
4 TraesCS5B01G567700 chr5B 91.270 756 63 1 27 782 711411953 711411201 0.000000e+00 1027.0
5 TraesCS5B01G567700 chr5B 89.668 784 76 3 1 783 711737249 711738028 0.000000e+00 994.0
6 TraesCS5B01G567700 chr5B 86.321 848 105 10 1343 2183 711406810 711405967 0.000000e+00 913.0
7 TraesCS5B01G567700 chr5B 87.153 576 55 6 784 1353 711411164 711410602 1.220000e-178 636.0
8 TraesCS5B01G567700 chr5B 87.621 412 36 4 790 1201 711964586 711964982 6.080000e-127 464.0
9 TraesCS5B01G567700 chr5B 84.681 235 13 10 2351 2581 711405725 711405510 2.430000e-51 213.0
10 TraesCS5B01G567700 chr5B 90.435 115 4 5 2437 2550 711934797 711934905 9.000000e-31 145.0
11 TraesCS5B01G567700 chr5B 78.365 208 19 11 2543 2727 711739968 711740172 9.130000e-21 111.0
12 TraesCS5B01G567700 chr5B 91.071 56 2 1 2351 2406 711349587 711349535 4.310000e-09 73.1
13 TraesCS5B01G567700 chr5B 95.556 45 1 1 2646 2690 711935072 711935115 1.550000e-08 71.3
14 TraesCS5B01G567700 chr5B 92.000 50 1 1 2351 2400 711934743 711934789 2.000000e-07 67.6
15 TraesCS5B01G567700 chr5D 88.226 1996 153 29 784 2744 561926015 561927963 0.000000e+00 2309.0
16 TraesCS5B01G567700 chr5D 84.891 1423 161 23 784 2192 551881734 551883116 0.000000e+00 1387.0
17 TraesCS5B01G567700 chr5D 85.272 1324 155 14 784 2101 552858333 552857044 0.000000e+00 1328.0
18 TraesCS5B01G567700 chr5D 85.737 1276 136 18 1079 2333 561898896 561900146 0.000000e+00 1306.0
19 TraesCS5B01G567700 chr5D 93.904 771 42 3 1 770 561897865 561898631 0.000000e+00 1158.0
20 TraesCS5B01G567700 chr5D 93.350 782 49 1 1 782 561925200 561925978 0.000000e+00 1153.0
21 TraesCS5B01G567700 chr5D 93.003 786 52 1 1 783 561643133 561642348 0.000000e+00 1144.0
22 TraesCS5B01G567700 chr5D 81.980 394 31 17 2377 2748 551883139 551883514 6.530000e-77 298.0
23 TraesCS5B01G567700 chr5D 94.828 58 3 0 3054 3111 561927959 561928016 1.190000e-14 91.6
24 TraesCS5B01G567700 chr7B 85.534 1507 173 26 784 2285 883768 882302 0.000000e+00 1533.0
25 TraesCS5B01G567700 chr7B 85.534 1507 173 26 784 2285 888239 886773 0.000000e+00 1533.0
26 TraesCS5B01G567700 chr7B 85.090 1328 156 16 784 2098 1350852 1352150 0.000000e+00 1317.0
27 TraesCS5B01G567700 chr7B 82.278 1580 175 38 784 2334 848919 850422 0.000000e+00 1269.0
28 TraesCS5B01G567700 chr7B 85.823 1051 110 18 1072 2098 1307598 1308633 0.000000e+00 1079.0
29 TraesCS5B01G567700 chr7B 85.266 1052 123 15 1242 2285 1034261 1033234 0.000000e+00 1055.0
30 TraesCS5B01G567700 chr7B 91.293 758 61 3 27 783 1306588 1307341 0.000000e+00 1029.0
31 TraesCS5B01G567700 chr7B 90.421 783 72 2 1 783 1102901 1102122 0.000000e+00 1027.0
32 TraesCS5B01G567700 chr7B 89.567 786 74 3 1 783 1350036 1350816 0.000000e+00 990.0
33 TraesCS5B01G567700 chr7B 85.224 758 95 10 1508 2255 1101507 1100757 0.000000e+00 763.0
34 TraesCS5B01G567700 chr7B 86.434 258 12 11 2351 2608 1032969 1032735 8.560000e-66 261.0
35 TraesCS5B01G567700 chr7B 88.333 180 12 6 2351 2530 886585 886415 1.130000e-49 207.0
36 TraesCS5B01G567700 chr7B 87.681 138 9 5 2475 2607 1100641 1100507 1.500000e-33 154.0
37 TraesCS5B01G567700 chr7B 93.000 100 5 1 2651 2748 1032649 1032550 9.000000e-31 145.0
38 TraesCS5B01G567700 chr7B 90.722 97 5 3 2351 2447 882114 882022 3.260000e-25 126.0
39 TraesCS5B01G567700 chr7B 84.884 86 5 2 2918 2995 1352470 1352555 2.570000e-11 80.5
40 TraesCS5B01G567700 chr7B 84.615 65 5 4 2548 2607 886418 886354 3.350000e-05 60.2
41 TraesCS5B01G567700 chr4B 84.615 247 28 2 784 1030 656881762 656881998 1.440000e-58 237.0
42 TraesCS5B01G567700 chr4B 88.679 53 1 3 2280 2332 656882943 656882990 3.350000e-05 60.2
43 TraesCS5B01G567700 chr5A 84.127 252 30 2 782 1033 698689814 698689573 5.190000e-58 235.0
44 TraesCS5B01G567700 chr4D 100.000 35 0 0 2280 2314 509851081 509851047 7.210000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G567700 chr5B 711331075 711334187 3112 True 5749.000000 5749 100.000000 1 3113 1 chr5B.!!$R1 3112
1 TraesCS5B01G567700 chr5B 711349535 711351177 1642 True 795.050000 1517 88.524000 784 2406 2 chr5B.!!$R2 1622
2 TraesCS5B01G567700 chr5B 711963766 711964982 1216 False 748.500000 1033 89.091000 1 1201 2 chr5B.!!$F3 1200
3 TraesCS5B01G567700 chr5B 711737249 711740172 2923 False 718.666667 1051 84.086000 1 2727 3 chr5B.!!$F1 2726
4 TraesCS5B01G567700 chr5B 711405510 711411953 6443 True 697.250000 1027 87.356250 27 2581 4 chr5B.!!$R3 2554
5 TraesCS5B01G567700 chr5D 552857044 552858333 1289 True 1328.000000 1328 85.272000 784 2101 1 chr5D.!!$R1 1317
6 TraesCS5B01G567700 chr5D 561897865 561900146 2281 False 1232.000000 1306 89.820500 1 2333 2 chr5D.!!$F2 2332
7 TraesCS5B01G567700 chr5D 561925200 561928016 2816 False 1184.533333 2309 92.134667 1 3111 3 chr5D.!!$F3 3110
8 TraesCS5B01G567700 chr5D 561642348 561643133 785 True 1144.000000 1144 93.003000 1 783 1 chr5D.!!$R2 782
9 TraesCS5B01G567700 chr5D 551881734 551883514 1780 False 842.500000 1387 83.435500 784 2748 2 chr5D.!!$F1 1964
10 TraesCS5B01G567700 chr7B 848919 850422 1503 False 1269.000000 1269 82.278000 784 2334 1 chr7B.!!$F1 1550
11 TraesCS5B01G567700 chr7B 1306588 1308633 2045 False 1054.000000 1079 88.558000 27 2098 2 chr7B.!!$F2 2071
12 TraesCS5B01G567700 chr7B 1350036 1352555 2519 False 795.833333 1317 86.513667 1 2995 3 chr7B.!!$F3 2994
13 TraesCS5B01G567700 chr7B 882022 888239 6217 True 691.840000 1533 86.947600 784 2607 5 chr7B.!!$R1 1823
14 TraesCS5B01G567700 chr7B 1100507 1102901 2394 True 648.000000 1027 87.775333 1 2607 3 chr7B.!!$R3 2606
15 TraesCS5B01G567700 chr7B 1032550 1034261 1711 True 487.000000 1055 88.233333 1242 2748 3 chr7B.!!$R2 1506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 883 0.107459 GACTGCCCCAAGATGTCTCC 60.107 60.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2435 11399 0.394565 AGAGTGCCTTGGACTGTGAC 59.605 55.0 0.0 0.0 33.56 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 57 7.753309 ATGAGCTTACCTAGTACACTATCAG 57.247 40.000 0.00 0.00 0.00 2.90
93 97 3.736094 TCCTGGACCTAGATCATTGGTT 58.264 45.455 0.00 0.00 37.13 3.67
170 174 2.229062 CGTGCTAGAAGAGAACTCCACA 59.771 50.000 0.00 0.00 30.22 4.17
287 291 1.888512 GGGCATTGTCAGAGCTTGAAA 59.111 47.619 0.00 0.00 37.61 2.69
291 295 3.670091 GCATTGTCAGAGCTTGAAAGAGC 60.670 47.826 0.00 0.00 43.02 4.09
296 300 2.181954 AGAGCTTGAAAGAGCACTGG 57.818 50.000 0.00 0.00 45.12 4.00
528 535 5.049405 GGTTGTGTCTTGACATCTGGTTAAG 60.049 44.000 6.74 0.00 42.73 1.85
623 630 6.828785 TCTCAAGGGCCTCTATTTGAATAAAC 59.171 38.462 6.46 0.00 0.00 2.01
842 883 0.107459 GACTGCCCCAAGATGTCTCC 60.107 60.000 0.00 0.00 0.00 3.71
871 912 1.372683 CCTCACACCTCCACACTGG 59.627 63.158 0.00 0.00 39.43 4.00
875 916 1.152963 ACACCTCCACACTGGCAAC 60.153 57.895 0.00 0.00 37.47 4.17
912 956 4.082136 AGAGGTGGAAGACGTTATTCAGAC 60.082 45.833 14.18 10.29 0.00 3.51
947 1030 3.959535 TGATGGAAAGGAATTGGTTGC 57.040 42.857 0.00 0.00 0.00 4.17
960 1043 1.959710 TGGTTGCTAGTGGGTATGGA 58.040 50.000 0.00 0.00 0.00 3.41
1042 1125 6.690530 TCGCACATATCATTGATAGACATCA 58.309 36.000 11.77 0.00 39.47 3.07
1184 1333 7.558807 TCATCTTACCAGAAGCAAATCATCATT 59.441 33.333 0.00 0.00 30.76 2.57
1203 1352 5.280945 TCATTGTCAAAAGTGCTAAACTGC 58.719 37.500 0.00 0.00 39.81 4.40
1207 1356 4.397730 TGTCAAAAGTGCTAAACTGCTTCA 59.602 37.500 0.00 0.00 39.81 3.02
1226 1375 3.338249 TCACAGCTCTTTCTATGTTGGC 58.662 45.455 0.00 0.00 0.00 4.52
1239 1388 0.106708 TGTTGGCGATAGATGGAGGC 59.893 55.000 0.00 0.00 39.76 4.70
1240 1389 0.106708 GTTGGCGATAGATGGAGGCA 59.893 55.000 0.00 0.00 37.39 4.75
1257 1442 5.104151 TGGAGGCAATGAGGAATGTGTAATA 60.104 40.000 0.00 0.00 0.00 0.98
1263 1454 7.282224 GGCAATGAGGAATGTGTAATACAGTTA 59.718 37.037 0.00 0.00 43.80 2.24
1292 1483 2.740981 CCAGCTCACTGCAGAAACTTAG 59.259 50.000 23.35 8.80 45.94 2.18
1316 1507 0.909610 TGGGACTGTAAGAGGCTGGG 60.910 60.000 0.00 0.00 37.43 4.45
1350 5349 2.371510 GGAGGAGAATGGAGGAGGAATG 59.628 54.545 0.00 0.00 0.00 2.67
1477 5476 3.244911 CCCTGCTTCCCTGAAGAAACTTA 60.245 47.826 7.98 0.00 41.71 2.24
1483 5482 7.001674 TGCTTCCCTGAAGAAACTTAATGTTA 58.998 34.615 7.98 0.00 41.71 2.41
1485 5484 8.023706 GCTTCCCTGAAGAAACTTAATGTTAAG 58.976 37.037 7.98 10.21 41.71 1.85
1554 5553 4.158764 TCTCTCACCACTCTAAAGCTAAGC 59.841 45.833 0.00 0.00 0.00 3.09
1586 5585 5.880054 AATTTAACAGTGGACGGATTCAG 57.120 39.130 0.00 0.00 0.00 3.02
1602 5601 1.550327 TCAGTCCTCTCATCGCAGTT 58.450 50.000 0.00 0.00 0.00 3.16
1604 5603 2.685388 TCAGTCCTCTCATCGCAGTTAG 59.315 50.000 0.00 0.00 0.00 2.34
1671 5670 3.825585 CAGCAGATATGCTCTCAGAGGTA 59.174 47.826 12.92 0.00 44.30 3.08
1676 5681 2.173126 ATGCTCTCAGAGGTAGCCTT 57.827 50.000 3.18 0.00 35.33 4.35
1736 5753 2.638480 TTGGAGAAACTCAGTGTGGG 57.362 50.000 0.00 0.00 31.08 4.61
1756 5773 3.118261 GGGTGACATCTCTGGATTGCTTA 60.118 47.826 0.00 0.00 0.00 3.09
1816 5839 7.014134 TCCACACACTTGTATTCATGTTTGATT 59.986 33.333 10.23 0.00 34.89 2.57
1854 5877 1.070758 ACGGAAGAGCAAGAGAAAGCA 59.929 47.619 0.00 0.00 0.00 3.91
1867 5890 0.321475 GAAAGCACTGCAGCTCCTCT 60.321 55.000 15.27 0.59 45.89 3.69
1870 5893 2.183811 CACTGCAGCTCCTCTCCG 59.816 66.667 15.27 0.00 0.00 4.63
1871 5894 2.283532 ACTGCAGCTCCTCTCCGT 60.284 61.111 15.27 0.00 0.00 4.69
1887 5911 2.625790 CTCCGTCCTCCAGAATCTAAGG 59.374 54.545 4.88 4.88 0.00 2.69
1966 5990 7.718334 TCTCTCAAGGAGTTATGTGTCATTA 57.282 36.000 0.00 0.00 42.40 1.90
2061 6088 3.051327 CAGCGCTGAGATAGATGAACAG 58.949 50.000 33.66 0.00 0.00 3.16
2136 10647 2.240160 ACACCCAAGGTAACACTTGTCA 59.760 45.455 5.37 0.00 44.89 3.58
2146 10657 4.713321 GGTAACACTTGTCACCTCCCTATA 59.287 45.833 0.00 0.00 0.00 1.31
2151 10666 6.415573 ACACTTGTCACCTCCCTATATTTTC 58.584 40.000 0.00 0.00 0.00 2.29
2213 10749 4.041075 TGTTGTGCCTCATCTTAACCACTA 59.959 41.667 0.00 0.00 0.00 2.74
2231 10767 8.553459 AACCACTATTGTCAAATCTTACAGAG 57.447 34.615 0.00 0.00 0.00 3.35
2249 10787 1.623811 GAGTAGCAGGTTCCACTCCAA 59.376 52.381 0.00 0.00 32.93 3.53
2473 11437 3.341823 TCTTGCTCTCTTTTCATCCAGC 58.658 45.455 0.00 0.00 0.00 4.85
2520 11490 7.201830 GCTAGTAGACTTGAGATTGATACACCA 60.202 40.741 0.00 0.00 0.00 4.17
2521 11491 6.868622 AGTAGACTTGAGATTGATACACCAC 58.131 40.000 0.00 0.00 0.00 4.16
2522 11492 5.091261 AGACTTGAGATTGATACACCACC 57.909 43.478 0.00 0.00 0.00 4.61
2702 11722 3.426568 GCAGGACTGAACAGCCGC 61.427 66.667 3.00 8.35 32.37 6.53
2718 11740 1.271102 GCCGCCCAATTTAACTGTTGA 59.729 47.619 2.69 0.00 0.00 3.18
2727 11749 7.523052 GCCCAATTTAACTGTTGACATCAGTAA 60.523 37.037 17.42 10.76 44.03 2.24
2748 11770 5.615925 AACAGCGAGGAAGAGGTATTTAT 57.384 39.130 0.00 0.00 0.00 1.40
2749 11771 5.615925 ACAGCGAGGAAGAGGTATTTATT 57.384 39.130 0.00 0.00 0.00 1.40
2751 11773 6.415573 ACAGCGAGGAAGAGGTATTTATTTT 58.584 36.000 0.00 0.00 0.00 1.82
2754 11776 7.281100 CAGCGAGGAAGAGGTATTTATTTTCTT 59.719 37.037 0.00 0.00 0.00 2.52
2756 11778 9.106070 GCGAGGAAGAGGTATTTATTTTCTTTA 57.894 33.333 0.00 0.00 0.00 1.85
2792 11814 9.838339 AAGGATTCCTACTAATATTGTGAAGTG 57.162 33.333 5.43 0.00 31.13 3.16
2793 11815 9.213777 AGGATTCCTACTAATATTGTGAAGTGA 57.786 33.333 2.49 0.00 28.47 3.41
2794 11816 9.832445 GGATTCCTACTAATATTGTGAAGTGAA 57.168 33.333 0.00 0.00 0.00 3.18
2809 11831 9.515020 TTGTGAAGTGAAATTGAATTGAGTTAC 57.485 29.630 0.00 0.00 0.00 2.50
2810 11832 8.681806 TGTGAAGTGAAATTGAATTGAGTTACA 58.318 29.630 0.00 0.00 0.00 2.41
2811 11833 8.958043 GTGAAGTGAAATTGAATTGAGTTACAC 58.042 33.333 0.00 0.00 0.00 2.90
2812 11834 8.902806 TGAAGTGAAATTGAATTGAGTTACACT 58.097 29.630 0.00 0.00 36.63 3.55
2813 11835 9.387123 GAAGTGAAATTGAATTGAGTTACACTC 57.613 33.333 0.00 0.00 45.26 3.51
2814 11836 8.682936 AGTGAAATTGAATTGAGTTACACTCT 57.317 30.769 5.53 0.00 45.27 3.24
2815 11837 9.778741 AGTGAAATTGAATTGAGTTACACTCTA 57.221 29.630 5.53 0.00 45.27 2.43
2816 11838 9.813080 GTGAAATTGAATTGAGTTACACTCTAC 57.187 33.333 5.53 0.00 45.27 2.59
2817 11839 9.778741 TGAAATTGAATTGAGTTACACTCTACT 57.221 29.630 5.53 0.00 45.27 2.57
2863 11907 8.562052 GCTTTCCAATTTGTTTGATTCTTGAAT 58.438 29.630 0.00 0.00 37.53 2.57
2896 11943 8.153550 AGCCTGATACTGAATTAATCTTGTAGG 58.846 37.037 0.00 0.00 0.00 3.18
2897 11944 8.150945 GCCTGATACTGAATTAATCTTGTAGGA 58.849 37.037 0.00 0.00 0.00 2.94
2898 11945 9.703892 CCTGATACTGAATTAATCTTGTAGGAG 57.296 37.037 0.00 0.00 0.00 3.69
2899 11946 9.202273 CTGATACTGAATTAATCTTGTAGGAGC 57.798 37.037 0.00 0.00 0.00 4.70
2900 11947 8.704668 TGATACTGAATTAATCTTGTAGGAGCA 58.295 33.333 0.00 0.00 0.00 4.26
2901 11948 9.202273 GATACTGAATTAATCTTGTAGGAGCAG 57.798 37.037 0.00 0.00 0.00 4.24
2902 11949 7.187824 ACTGAATTAATCTTGTAGGAGCAGA 57.812 36.000 0.00 0.00 0.00 4.26
2903 11950 7.271511 ACTGAATTAATCTTGTAGGAGCAGAG 58.728 38.462 0.00 0.00 0.00 3.35
2904 11951 6.051717 TGAATTAATCTTGTAGGAGCAGAGC 58.948 40.000 0.00 0.00 0.00 4.09
2905 11952 5.620738 ATTAATCTTGTAGGAGCAGAGCA 57.379 39.130 0.00 0.00 0.00 4.26
2906 11953 3.988976 AATCTTGTAGGAGCAGAGCAA 57.011 42.857 0.00 0.00 0.00 3.91
2907 11954 4.500499 AATCTTGTAGGAGCAGAGCAAT 57.500 40.909 0.00 0.00 0.00 3.56
2908 11955 3.257469 TCTTGTAGGAGCAGAGCAATG 57.743 47.619 0.00 0.00 0.00 2.82
2909 11956 2.833943 TCTTGTAGGAGCAGAGCAATGA 59.166 45.455 0.00 0.00 0.00 2.57
2910 11957 2.975732 TGTAGGAGCAGAGCAATGAG 57.024 50.000 0.00 0.00 0.00 2.90
2912 11959 2.833943 TGTAGGAGCAGAGCAATGAGAA 59.166 45.455 0.00 0.00 0.00 2.87
2915 11962 4.767578 AGGAGCAGAGCAATGAGAATTA 57.232 40.909 0.00 0.00 0.00 1.40
2916 11963 5.307544 AGGAGCAGAGCAATGAGAATTAT 57.692 39.130 0.00 0.00 0.00 1.28
2959 12020 6.446781 AGTATTGTACACAGCTACGTACAT 57.553 37.500 21.70 15.79 45.38 2.29
2967 12028 3.618594 CACAGCTACGTACATTCTTGCAT 59.381 43.478 0.00 0.00 0.00 3.96
2995 12060 8.353423 AGAATGCATACTTGTTTAGGTTTCAT 57.647 30.769 0.00 0.00 0.00 2.57
2996 12061 8.806146 AGAATGCATACTTGTTTAGGTTTCATT 58.194 29.630 0.00 0.00 0.00 2.57
2997 12062 8.761575 AATGCATACTTGTTTAGGTTTCATTG 57.238 30.769 0.00 0.00 0.00 2.82
2998 12063 6.155827 TGCATACTTGTTTAGGTTTCATTGC 58.844 36.000 0.00 0.00 0.00 3.56
2999 12064 5.576774 GCATACTTGTTTAGGTTTCATTGCC 59.423 40.000 0.00 0.00 0.00 4.52
3000 12065 6.686630 CATACTTGTTTAGGTTTCATTGCCA 58.313 36.000 0.00 0.00 0.00 4.92
3001 12066 5.806654 ACTTGTTTAGGTTTCATTGCCAT 57.193 34.783 0.00 0.00 0.00 4.40
3002 12067 6.173427 ACTTGTTTAGGTTTCATTGCCATT 57.827 33.333 0.00 0.00 0.00 3.16
3003 12068 5.990996 ACTTGTTTAGGTTTCATTGCCATTG 59.009 36.000 0.00 0.00 0.00 2.82
3004 12069 5.798125 TGTTTAGGTTTCATTGCCATTGA 57.202 34.783 0.00 0.00 0.00 2.57
3005 12070 6.357579 TGTTTAGGTTTCATTGCCATTGAT 57.642 33.333 0.00 0.00 0.00 2.57
3006 12071 6.397272 TGTTTAGGTTTCATTGCCATTGATC 58.603 36.000 0.00 0.00 0.00 2.92
3007 12072 6.211184 TGTTTAGGTTTCATTGCCATTGATCT 59.789 34.615 0.00 0.00 0.00 2.75
3008 12073 4.730949 AGGTTTCATTGCCATTGATCTG 57.269 40.909 0.00 0.00 0.00 2.90
3009 12074 3.449737 AGGTTTCATTGCCATTGATCTGG 59.550 43.478 0.00 0.00 39.45 3.86
3010 12075 3.431207 GGTTTCATTGCCATTGATCTGGG 60.431 47.826 3.36 0.00 36.75 4.45
3011 12076 2.076207 TCATTGCCATTGATCTGGGG 57.924 50.000 3.36 0.00 36.75 4.96
3012 12077 0.391597 CATTGCCATTGATCTGGGGC 59.608 55.000 13.10 13.10 46.58 5.80
3014 12079 3.851955 GCCATTGATCTGGGGCAG 58.148 61.111 14.54 0.00 45.70 4.85
3015 12080 1.831286 GCCATTGATCTGGGGCAGG 60.831 63.158 14.54 0.42 45.70 4.85
3016 12081 1.616921 CCATTGATCTGGGGCAGGT 59.383 57.895 0.00 0.00 32.28 4.00
3017 12082 0.032813 CCATTGATCTGGGGCAGGTT 60.033 55.000 0.00 0.00 32.28 3.50
3018 12083 1.620524 CCATTGATCTGGGGCAGGTTT 60.621 52.381 0.00 0.00 32.28 3.27
3019 12084 1.753073 CATTGATCTGGGGCAGGTTTC 59.247 52.381 0.00 0.00 31.51 2.78
3020 12085 0.776810 TTGATCTGGGGCAGGTTTCA 59.223 50.000 0.00 0.00 31.51 2.69
3021 12086 0.038166 TGATCTGGGGCAGGTTTCAC 59.962 55.000 0.00 0.00 31.51 3.18
3022 12087 0.329596 GATCTGGGGCAGGTTTCACT 59.670 55.000 0.00 0.00 31.51 3.41
3023 12088 0.038744 ATCTGGGGCAGGTTTCACTG 59.961 55.000 0.00 0.00 41.41 3.66
3024 12089 1.151450 CTGGGGCAGGTTTCACTGT 59.849 57.895 0.00 0.00 40.59 3.55
3025 12090 0.468029 CTGGGGCAGGTTTCACTGTT 60.468 55.000 0.00 0.00 40.59 3.16
3026 12091 0.754957 TGGGGCAGGTTTCACTGTTG 60.755 55.000 0.00 0.00 40.59 3.33
3027 12092 1.363807 GGGCAGGTTTCACTGTTGC 59.636 57.895 0.00 0.00 40.59 4.17
3028 12093 1.391157 GGGCAGGTTTCACTGTTGCA 61.391 55.000 2.75 0.00 40.59 4.08
3029 12094 0.031178 GGCAGGTTTCACTGTTGCAG 59.969 55.000 2.75 0.00 40.59 4.41
3030 12095 1.024271 GCAGGTTTCACTGTTGCAGA 58.976 50.000 2.91 0.00 40.59 4.26
3031 12096 1.002033 GCAGGTTTCACTGTTGCAGAG 60.002 52.381 2.91 0.00 40.59 3.35
3032 12097 2.292267 CAGGTTTCACTGTTGCAGAGT 58.708 47.619 2.91 0.00 35.18 3.24
3033 12098 3.466836 CAGGTTTCACTGTTGCAGAGTA 58.533 45.455 2.91 0.00 35.18 2.59
3034 12099 4.067896 CAGGTTTCACTGTTGCAGAGTAT 58.932 43.478 2.91 0.00 35.18 2.12
3035 12100 4.153117 CAGGTTTCACTGTTGCAGAGTATC 59.847 45.833 2.91 0.00 35.18 2.24
3036 12101 6.028412 CAGGTTTCACTGTTGCAGAGTATCT 61.028 44.000 2.91 0.00 38.90 1.98
3050 12115 3.988819 GAGTATCTGGAGATGGCAACTC 58.011 50.000 15.71 15.71 36.05 3.01
3051 12116 3.640967 GAGTATCTGGAGATGGCAACTCT 59.359 47.826 21.92 7.53 35.29 3.24
3052 12117 4.809193 AGTATCTGGAGATGGCAACTCTA 58.191 43.478 21.92 16.30 36.05 2.43
3053 12118 5.211973 AGTATCTGGAGATGGCAACTCTAA 58.788 41.667 21.92 11.41 36.05 2.10
3054 12119 4.686191 ATCTGGAGATGGCAACTCTAAG 57.314 45.455 21.92 18.76 35.10 2.18
3055 12120 2.768527 TCTGGAGATGGCAACTCTAAGG 59.231 50.000 21.92 7.69 35.10 2.69
3056 12121 2.503356 CTGGAGATGGCAACTCTAAGGT 59.497 50.000 21.92 0.00 35.10 3.50
3057 12122 3.706594 CTGGAGATGGCAACTCTAAGGTA 59.293 47.826 21.92 4.21 35.10 3.08
3058 12123 4.101114 TGGAGATGGCAACTCTAAGGTAA 58.899 43.478 21.92 0.33 35.10 2.85
3059 12124 4.721776 TGGAGATGGCAACTCTAAGGTAAT 59.278 41.667 21.92 0.00 35.10 1.89
3070 12135 7.469181 GCAACTCTAAGGTAATGAATGATTGGG 60.469 40.741 0.00 0.00 0.00 4.12
3071 12136 7.213178 ACTCTAAGGTAATGAATGATTGGGT 57.787 36.000 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 57 7.976175 GTCCAGGAATTTCAAGTGATAAAATCC 59.024 37.037 0.00 0.00 35.68 3.01
93 97 4.365514 TCAGGCAAATCAGAACTACCAA 57.634 40.909 0.00 0.00 0.00 3.67
170 174 5.184864 TCTTTCCAACATTGCGAATATTGGT 59.815 36.000 14.50 0.00 40.61 3.67
287 291 2.165845 GACCACGTATAACCAGTGCTCT 59.834 50.000 0.00 0.00 34.79 4.09
291 295 4.182693 TCAAGACCACGTATAACCAGTG 57.817 45.455 0.00 0.00 35.79 3.66
296 300 4.557276 CGTGTTCAAGACCACGTATAAC 57.443 45.455 11.31 0.00 36.45 1.89
473 480 4.166725 ACCAATCATACCACCATGATCTGT 59.833 41.667 0.00 0.00 43.33 3.41
476 483 4.074970 GGACCAATCATACCACCATGATC 58.925 47.826 0.00 0.00 43.33 2.92
528 535 8.556213 TTCTAGAGTGAGAGTCTCTAAACTTC 57.444 38.462 20.64 9.91 41.84 3.01
623 630 4.553323 CCAAACTGAAGCATTCCAGAAAG 58.447 43.478 0.00 0.00 46.93 2.62
783 790 5.502544 GCGTAAATTGGTGCAAGATACTCTC 60.503 44.000 0.00 0.00 0.00 3.20
784 791 4.332819 GCGTAAATTGGTGCAAGATACTCT 59.667 41.667 0.00 0.00 0.00 3.24
787 794 4.094294 TCTGCGTAAATTGGTGCAAGATAC 59.906 41.667 0.00 0.00 36.82 2.24
804 845 2.351726 GTCACAAACTTCAAGTCTGCGT 59.648 45.455 0.00 0.00 0.00 5.24
842 883 4.100084 TGTGAGGCATGGAGGGCG 62.100 66.667 0.00 0.00 38.57 6.13
871 912 5.691754 CACCTCTTTTAACATCCAAAGTTGC 59.308 40.000 0.00 0.00 32.67 4.17
875 916 6.490040 TCTTCCACCTCTTTTAACATCCAAAG 59.510 38.462 0.00 0.00 0.00 2.77
912 956 5.605564 TTCCATCATAAGACAACAACGTG 57.394 39.130 0.00 0.00 0.00 4.49
947 1030 1.794714 AGCACCTCCATACCCACTAG 58.205 55.000 0.00 0.00 0.00 2.57
960 1043 3.587840 TGGTAGGCCAAAGCACCT 58.412 55.556 5.01 0.00 42.83 4.00
1170 1319 6.073440 GCACTTTTGACAATGATGATTTGCTT 60.073 34.615 0.00 0.00 0.00 3.91
1184 1333 4.397730 TGAAGCAGTTTAGCACTTTTGACA 59.602 37.500 0.00 0.00 36.85 3.58
1203 1352 4.142730 GCCAACATAGAAAGAGCTGTGAAG 60.143 45.833 0.00 0.00 32.17 3.02
1207 1356 2.028112 TCGCCAACATAGAAAGAGCTGT 60.028 45.455 0.00 0.00 0.00 4.40
1219 1368 1.271054 GCCTCCATCTATCGCCAACAT 60.271 52.381 0.00 0.00 0.00 2.71
1226 1375 2.564504 TCCTCATTGCCTCCATCTATCG 59.435 50.000 0.00 0.00 0.00 2.92
1239 1388 8.612619 GGTAACTGTATTACACATTCCTCATTG 58.387 37.037 0.00 0.00 36.29 2.82
1240 1389 8.325787 TGGTAACTGTATTACACATTCCTCATT 58.674 33.333 0.00 0.00 36.29 2.57
1257 1442 2.840038 TGAGCTGGATGATGGTAACTGT 59.160 45.455 0.00 0.00 37.61 3.55
1263 1454 0.107312 GCAGTGAGCTGGATGATGGT 60.107 55.000 0.00 0.00 42.78 3.55
1292 1483 1.406205 GCCTCTTACAGTCCCAGAAGC 60.406 57.143 0.00 0.00 0.00 3.86
1316 1507 0.321122 CTCCTCCACAGGCACAAGAC 60.321 60.000 0.00 0.00 40.12 3.01
1350 5349 0.807496 GCAATGACTTGTCCTCCTGC 59.193 55.000 0.00 0.00 34.69 4.85
1477 5476 4.640771 TGCTTGTCTCTCCCTTAACATT 57.359 40.909 0.00 0.00 0.00 2.71
1483 5482 2.641815 ACTTCATGCTTGTCTCTCCCTT 59.358 45.455 0.00 0.00 0.00 3.95
1485 5484 2.027745 TGACTTCATGCTTGTCTCTCCC 60.028 50.000 11.69 0.00 0.00 4.30
1554 5553 4.455533 TCCACTGTTAAATTACTGCAGCAG 59.544 41.667 21.54 21.54 37.52 4.24
1586 5585 1.537135 GGCTAACTGCGATGAGAGGAC 60.537 57.143 0.00 0.00 44.05 3.85
1602 5601 3.369471 GCACTTCCAGTTGTATGAGGCTA 60.369 47.826 0.00 0.00 0.00 3.93
1604 5603 1.740025 GCACTTCCAGTTGTATGAGGC 59.260 52.381 0.00 0.00 0.00 4.70
1736 5753 6.541641 AGAAATAAGCAATCCAGAGATGTCAC 59.458 38.462 0.00 0.00 31.29 3.67
1756 5773 5.196695 GAGGAGGTTGCAAATAGGAGAAAT 58.803 41.667 0.00 0.00 0.00 2.17
1816 5839 1.339055 CGTCAAGCTTTCCATCCTCCA 60.339 52.381 0.00 0.00 0.00 3.86
1854 5877 2.283532 ACGGAGAGGAGCTGCAGT 60.284 61.111 16.64 1.59 34.07 4.40
1867 5890 2.024273 ACCTTAGATTCTGGAGGACGGA 60.024 50.000 19.17 0.00 33.47 4.69
1870 5893 6.948589 AGTAAAACCTTAGATTCTGGAGGAC 58.051 40.000 19.17 10.24 33.47 3.85
1871 5894 6.156429 GGAGTAAAACCTTAGATTCTGGAGGA 59.844 42.308 19.17 0.96 33.47 3.71
1887 5911 5.162000 GCAGATGTATGCAGGAGTAAAAC 57.838 43.478 0.00 0.00 45.77 2.43
1966 5990 2.628178 TCGATCGGATATTTGGACAGCT 59.372 45.455 16.41 0.00 0.00 4.24
2061 6088 7.171508 GGGTTGGTTCTTTTGATTTTCTCAATC 59.828 37.037 0.00 0.00 43.30 2.67
2114 10625 2.616842 GACAAGTGTTACCTTGGGTGTG 59.383 50.000 14.63 0.00 44.89 3.82
2146 10657 7.809806 CCACGCTTCAGAAATAGAAAAGAAAAT 59.190 33.333 0.00 0.00 0.00 1.82
2151 10666 5.613358 ACCACGCTTCAGAAATAGAAAAG 57.387 39.130 0.00 0.00 0.00 2.27
2183 10706 5.886960 AAGATGAGGCACAACAGAAATAC 57.113 39.130 0.00 0.00 0.00 1.89
2213 10749 6.820656 CCTGCTACTCTGTAAGATTTGACAAT 59.179 38.462 0.00 0.00 45.62 2.71
2231 10767 2.633488 GATTGGAGTGGAACCTGCTAC 58.367 52.381 0.00 0.00 37.80 3.58
2249 10787 2.291209 TGATTGCAACAGTGGTGGAT 57.709 45.000 10.86 0.00 0.00 3.41
2435 11399 0.394565 AGAGTGCCTTGGACTGTGAC 59.605 55.000 0.00 0.00 33.56 3.67
2452 11416 3.008813 AGCTGGATGAAAAGAGAGCAAGA 59.991 43.478 0.00 0.00 0.00 3.02
2473 11437 4.099419 AGCACAAAAGGGGTACAAAAAGAG 59.901 41.667 0.00 0.00 0.00 2.85
2699 11719 2.294791 TGTCAACAGTTAAATTGGGCGG 59.705 45.455 0.00 0.00 0.00 6.13
2702 11722 6.331369 ACTGATGTCAACAGTTAAATTGGG 57.669 37.500 9.79 0.00 44.69 4.12
2718 11740 2.826128 TCTTCCTCGCTGTTACTGATGT 59.174 45.455 0.00 0.00 0.00 3.06
2727 11749 5.615925 AATAAATACCTCTTCCTCGCTGT 57.384 39.130 0.00 0.00 0.00 4.40
2766 11788 9.838339 CACTTCACAATATTAGTAGGAATCCTT 57.162 33.333 7.30 0.00 34.61 3.36
2768 11790 9.832445 TTCACTTCACAATATTAGTAGGAATCC 57.168 33.333 0.00 0.00 0.00 3.01
2783 11805 9.515020 GTAACTCAATTCAATTTCACTTCACAA 57.485 29.630 0.00 0.00 0.00 3.33
2785 11807 8.958043 GTGTAACTCAATTCAATTTCACTTCAC 58.042 33.333 0.00 0.00 0.00 3.18
2832 11854 9.558396 AGAATCAAACAAATTGGAAAGCAAATA 57.442 25.926 0.00 0.00 39.62 1.40
2835 11857 7.551974 TCAAGAATCAAACAAATTGGAAAGCAA 59.448 29.630 0.00 0.00 39.62 3.91
2887 11934 3.453717 TCATTGCTCTGCTCCTACAAGAT 59.546 43.478 0.00 0.00 0.00 2.40
2892 11939 3.533606 TTCTCATTGCTCTGCTCCTAC 57.466 47.619 0.00 0.00 0.00 3.18
2895 11942 4.320348 GCATAATTCTCATTGCTCTGCTCC 60.320 45.833 0.00 0.00 32.41 4.70
2896 11943 4.515944 AGCATAATTCTCATTGCTCTGCTC 59.484 41.667 0.00 0.00 41.38 4.26
2897 11944 4.276183 CAGCATAATTCTCATTGCTCTGCT 59.724 41.667 0.00 0.00 43.25 4.24
2898 11945 4.537965 CAGCATAATTCTCATTGCTCTGC 58.462 43.478 0.00 0.00 43.25 4.26
2899 11946 4.023107 CCCAGCATAATTCTCATTGCTCTG 60.023 45.833 0.00 0.00 43.25 3.35
2900 11947 4.142790 CCCAGCATAATTCTCATTGCTCT 58.857 43.478 0.00 0.00 43.25 4.09
2901 11948 3.255149 CCCCAGCATAATTCTCATTGCTC 59.745 47.826 0.00 0.00 43.25 4.26
2902 11949 3.228453 CCCCAGCATAATTCTCATTGCT 58.772 45.455 0.00 0.00 45.86 3.91
2903 11950 2.288640 GCCCCAGCATAATTCTCATTGC 60.289 50.000 0.00 0.00 39.53 3.56
2904 11951 2.960384 TGCCCCAGCATAATTCTCATTG 59.040 45.455 0.00 0.00 46.52 2.82
2905 11952 3.317455 TGCCCCAGCATAATTCTCATT 57.683 42.857 0.00 0.00 46.52 2.57
2946 12003 3.313012 TGCAAGAATGTACGTAGCTGT 57.687 42.857 0.00 0.00 0.00 4.40
2967 12028 5.815581 ACCTAAACAAGTATGCATTCTCCA 58.184 37.500 3.54 0.00 0.00 3.86
2981 12046 6.166984 TCAATGGCAATGAAACCTAAACAA 57.833 33.333 2.00 0.00 0.00 2.83
2982 12047 5.798125 TCAATGGCAATGAAACCTAAACA 57.202 34.783 2.00 0.00 0.00 2.83
2995 12060 4.360643 GCCCCAGATCAATGGCAA 57.639 55.556 12.84 0.00 43.46 4.52
2997 12062 1.831286 CCTGCCCCAGATCAATGGC 60.831 63.158 11.29 11.29 44.27 4.40
2998 12063 0.032813 AACCTGCCCCAGATCAATGG 60.033 55.000 0.00 0.00 40.29 3.16
2999 12064 1.753073 GAAACCTGCCCCAGATCAATG 59.247 52.381 0.00 0.00 32.44 2.82
3000 12065 1.358787 TGAAACCTGCCCCAGATCAAT 59.641 47.619 0.00 0.00 32.44 2.57
3001 12066 0.776810 TGAAACCTGCCCCAGATCAA 59.223 50.000 0.00 0.00 32.44 2.57
3002 12067 0.038166 GTGAAACCTGCCCCAGATCA 59.962 55.000 0.00 0.00 32.44 2.92
3003 12068 0.329596 AGTGAAACCTGCCCCAGATC 59.670 55.000 0.00 0.00 37.80 2.75
3004 12069 0.038744 CAGTGAAACCTGCCCCAGAT 59.961 55.000 0.00 0.00 37.80 2.90
3005 12070 1.352622 ACAGTGAAACCTGCCCCAGA 61.353 55.000 0.00 0.00 37.80 3.86
3006 12071 0.468029 AACAGTGAAACCTGCCCCAG 60.468 55.000 0.00 0.00 37.80 4.45
3007 12072 0.754957 CAACAGTGAAACCTGCCCCA 60.755 55.000 0.00 0.00 37.80 4.96
3008 12073 2.041153 CAACAGTGAAACCTGCCCC 58.959 57.895 0.00 0.00 37.80 5.80
3009 12074 1.363807 GCAACAGTGAAACCTGCCC 59.636 57.895 0.00 0.00 37.80 5.36
3010 12075 0.031178 CTGCAACAGTGAAACCTGCC 59.969 55.000 0.00 0.00 36.81 4.85
3011 12076 1.002033 CTCTGCAACAGTGAAACCTGC 60.002 52.381 0.00 0.00 37.80 4.85
3012 12077 2.292267 ACTCTGCAACAGTGAAACCTG 58.708 47.619 0.00 0.00 37.80 4.00
3013 12078 2.717639 ACTCTGCAACAGTGAAACCT 57.282 45.000 0.00 0.00 37.80 3.50
3014 12079 4.153117 CAGATACTCTGCAACAGTGAAACC 59.847 45.833 8.02 0.00 37.72 3.27
3015 12080 4.153117 CCAGATACTCTGCAACAGTGAAAC 59.847 45.833 8.02 0.00 42.98 2.78
3016 12081 4.040339 TCCAGATACTCTGCAACAGTGAAA 59.960 41.667 8.02 0.00 42.98 2.69
3017 12082 3.578282 TCCAGATACTCTGCAACAGTGAA 59.422 43.478 8.02 0.00 42.98 3.18
3018 12083 3.165071 TCCAGATACTCTGCAACAGTGA 58.835 45.455 8.02 0.00 42.98 3.41
3019 12084 3.194329 TCTCCAGATACTCTGCAACAGTG 59.806 47.826 8.02 0.00 42.98 3.66
3020 12085 3.435275 TCTCCAGATACTCTGCAACAGT 58.565 45.455 3.57 3.57 42.98 3.55
3021 12086 4.370049 CATCTCCAGATACTCTGCAACAG 58.630 47.826 0.00 0.00 42.98 3.16
3022 12087 3.133542 CCATCTCCAGATACTCTGCAACA 59.866 47.826 0.00 0.00 42.98 3.33
3023 12088 3.726607 CCATCTCCAGATACTCTGCAAC 58.273 50.000 0.00 0.00 42.98 4.17
3024 12089 2.103771 GCCATCTCCAGATACTCTGCAA 59.896 50.000 0.00 0.00 42.98 4.08
3025 12090 1.690893 GCCATCTCCAGATACTCTGCA 59.309 52.381 0.00 0.00 42.98 4.41
3026 12091 1.690893 TGCCATCTCCAGATACTCTGC 59.309 52.381 0.00 0.00 42.98 4.26
3027 12092 3.387374 AGTTGCCATCTCCAGATACTCTG 59.613 47.826 0.00 0.00 43.91 3.35
3028 12093 3.640967 GAGTTGCCATCTCCAGATACTCT 59.359 47.826 8.89 1.19 35.29 3.24
3029 12094 3.640967 AGAGTTGCCATCTCCAGATACTC 59.359 47.826 8.36 8.36 36.99 2.59
3030 12095 3.652055 AGAGTTGCCATCTCCAGATACT 58.348 45.455 0.00 0.00 32.63 2.12
3031 12096 5.510520 CCTTAGAGTTGCCATCTCCAGATAC 60.511 48.000 0.00 0.00 32.63 2.24
3032 12097 4.590647 CCTTAGAGTTGCCATCTCCAGATA 59.409 45.833 0.00 0.00 32.63 1.98
3033 12098 3.390639 CCTTAGAGTTGCCATCTCCAGAT 59.609 47.826 0.00 0.00 34.56 2.90
3034 12099 2.768527 CCTTAGAGTTGCCATCTCCAGA 59.231 50.000 0.00 0.00 32.93 3.86
3035 12100 2.503356 ACCTTAGAGTTGCCATCTCCAG 59.497 50.000 0.00 0.00 32.93 3.86
3036 12101 2.551270 ACCTTAGAGTTGCCATCTCCA 58.449 47.619 0.00 0.00 32.93 3.86
3037 12102 4.755266 TTACCTTAGAGTTGCCATCTCC 57.245 45.455 0.00 0.00 32.93 3.71
3038 12103 5.918608 TCATTACCTTAGAGTTGCCATCTC 58.081 41.667 0.00 0.00 0.00 2.75
3039 12104 5.957771 TCATTACCTTAGAGTTGCCATCT 57.042 39.130 0.00 0.00 0.00 2.90
3040 12105 6.767902 TCATTCATTACCTTAGAGTTGCCATC 59.232 38.462 0.00 0.00 0.00 3.51
3041 12106 6.662755 TCATTCATTACCTTAGAGTTGCCAT 58.337 36.000 0.00 0.00 0.00 4.40
3042 12107 6.061022 TCATTCATTACCTTAGAGTTGCCA 57.939 37.500 0.00 0.00 0.00 4.92
3043 12108 7.420800 CAATCATTCATTACCTTAGAGTTGCC 58.579 38.462 0.00 0.00 0.00 4.52
3044 12109 7.420800 CCAATCATTCATTACCTTAGAGTTGC 58.579 38.462 0.00 0.00 0.00 4.17
3045 12110 7.557719 ACCCAATCATTCATTACCTTAGAGTTG 59.442 37.037 0.00 0.00 0.00 3.16
3046 12111 7.557719 CACCCAATCATTCATTACCTTAGAGTT 59.442 37.037 0.00 0.00 0.00 3.01
3047 12112 7.056635 CACCCAATCATTCATTACCTTAGAGT 58.943 38.462 0.00 0.00 0.00 3.24
3048 12113 6.016777 GCACCCAATCATTCATTACCTTAGAG 60.017 42.308 0.00 0.00 0.00 2.43
3049 12114 5.827797 GCACCCAATCATTCATTACCTTAGA 59.172 40.000 0.00 0.00 0.00 2.10
3050 12115 5.829924 AGCACCCAATCATTCATTACCTTAG 59.170 40.000 0.00 0.00 0.00 2.18
3051 12116 5.765510 AGCACCCAATCATTCATTACCTTA 58.234 37.500 0.00 0.00 0.00 2.69
3052 12117 4.613437 AGCACCCAATCATTCATTACCTT 58.387 39.130 0.00 0.00 0.00 3.50
3053 12118 4.255510 AGCACCCAATCATTCATTACCT 57.744 40.909 0.00 0.00 0.00 3.08
3054 12119 6.096846 ACTTAAGCACCCAATCATTCATTACC 59.903 38.462 1.29 0.00 0.00 2.85
3055 12120 7.100458 ACTTAAGCACCCAATCATTCATTAC 57.900 36.000 1.29 0.00 0.00 1.89
3056 12121 6.889177 TGACTTAAGCACCCAATCATTCATTA 59.111 34.615 1.29 0.00 0.00 1.90
3057 12122 5.716228 TGACTTAAGCACCCAATCATTCATT 59.284 36.000 1.29 0.00 0.00 2.57
3058 12123 5.126061 GTGACTTAAGCACCCAATCATTCAT 59.874 40.000 15.14 0.00 0.00 2.57
3059 12124 4.458989 GTGACTTAAGCACCCAATCATTCA 59.541 41.667 15.14 0.73 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.