Multiple sequence alignment - TraesCS5B01G567300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G567300 chr5B 100.000 8849 0 0 1 8849 711189086 711180238 0.000000e+00 16342.0
1 TraesCS5B01G567300 chr5B 89.667 2613 264 6 5259 7868 711133859 711131250 0.000000e+00 3325.0
2 TraesCS5B01G567300 chr5B 89.172 2355 249 6 5258 7610 711240860 711238510 0.000000e+00 2931.0
3 TraesCS5B01G567300 chr5B 87.255 2503 312 5 5241 7741 695482664 695485161 0.000000e+00 2848.0
4 TraesCS5B01G567300 chr5B 87.217 2472 315 1 5259 7729 695787461 695789932 0.000000e+00 2813.0
5 TraesCS5B01G567300 chr5B 91.021 1214 89 5 1844 3056 711244413 711243219 0.000000e+00 1620.0
6 TraesCS5B01G567300 chr5B 85.742 1529 180 21 1800 3326 695480942 695482434 0.000000e+00 1581.0
7 TraesCS5B01G567300 chr5B 82.987 1540 215 29 1792 3329 711827280 711828774 0.000000e+00 1349.0
8 TraesCS5B01G567300 chr5B 95.107 327 15 1 7558 7884 711148353 711148028 1.700000e-141 514.0
9 TraesCS5B01G567300 chr5B 87.750 400 17 4 8260 8637 711130779 711130390 1.050000e-118 438.0
10 TraesCS5B01G567300 chr5B 86.325 234 29 1 1079 1312 710965272 710965042 1.470000e-62 252.0
11 TraesCS5B01G567300 chr5B 88.421 95 11 0 303 397 712202588 712202682 2.020000e-21 115.0
12 TraesCS5B01G567300 chr5B 85.567 97 11 2 300 395 711416204 711416110 2.030000e-16 99.0
13 TraesCS5B01G567300 chr5B 95.238 42 1 1 8477 8518 643323893 643323853 2.060000e-06 65.8
14 TraesCS5B01G567300 chr5B 87.755 49 5 1 8461 8508 710958065 710958017 1.000000e-03 56.5
15 TraesCS5B01G567300 chr5D 97.298 2850 75 2 5122 7970 560500577 560503425 0.000000e+00 4835.0
16 TraesCS5B01G567300 chr5D 96.261 2113 63 8 1770 3874 560496828 560498932 0.000000e+00 3450.0
17 TraesCS5B01G567300 chr5D 85.165 2629 336 32 5145 7747 560534868 560532268 0.000000e+00 2645.0
18 TraesCS5B01G567300 chr5D 91.537 1347 40 27 460 1753 560495359 560496684 0.000000e+00 1788.0
19 TraesCS5B01G567300 chr5D 93.712 1161 36 7 3946 5086 560498918 560500061 0.000000e+00 1705.0
20 TraesCS5B01G567300 chr5D 85.649 1533 181 18 1800 3329 555433587 555432091 0.000000e+00 1576.0
21 TraesCS5B01G567300 chr5D 86.585 1230 148 12 1835 3060 560538069 560536853 0.000000e+00 1341.0
22 TraesCS5B01G567300 chr5D 92.109 811 41 12 7968 8763 560503454 560504256 0.000000e+00 1122.0
23 TraesCS5B01G567300 chr5D 83.662 355 51 7 7530 7881 551836465 551836815 2.380000e-85 327.0
24 TraesCS5B01G567300 chr5D 81.098 328 51 9 1056 1377 560538955 560538633 1.470000e-62 252.0
25 TraesCS5B01G567300 chr5D 92.308 143 9 1 4604 4746 560484619 560484759 1.510000e-47 202.0
26 TraesCS5B01G567300 chr5D 94.737 95 5 0 1 95 560495024 560495118 1.990000e-31 148.0
27 TraesCS5B01G567300 chr5D 84.615 143 18 4 8380 8521 561667738 561667599 1.200000e-28 139.0
28 TraesCS5B01G567300 chr5D 79.781 183 34 2 1052 1234 560512569 560512748 7.210000e-26 130.0
29 TraesCS5B01G567300 chr5D 94.872 78 4 0 8762 8839 560504341 560504418 1.210000e-23 122.0
30 TraesCS5B01G567300 chr5D 88.542 96 7 2 8373 8464 561902505 561902600 7.260000e-21 113.0
31 TraesCS5B01G567300 chr5D 92.405 79 5 1 3876 3953 503855877 503855799 2.610000e-20 111.0
32 TraesCS5B01G567300 chr5D 87.368 95 1 1 301 395 560495281 560495364 2.030000e-16 99.0
33 TraesCS5B01G567300 chr5D 95.082 61 3 0 130 190 560495127 560495187 7.310000e-16 97.1
34 TraesCS5B01G567300 chr5D 78.862 123 15 4 302 413 552855403 552855281 1.230000e-08 73.1
35 TraesCS5B01G567300 chr5D 93.182 44 1 1 8806 8849 560504409 560504450 7.420000e-06 63.9
36 TraesCS5B01G567300 chr4A 97.158 2850 75 3 5122 7970 603679141 603681985 0.000000e+00 4809.0
37 TraesCS5B01G567300 chr4A 95.972 2110 72 7 1770 3874 603675412 603677513 0.000000e+00 3413.0
38 TraesCS5B01G567300 chr4A 94.401 1143 38 9 3946 5068 603677499 603678635 0.000000e+00 1733.0
39 TraesCS5B01G567300 chr4A 91.354 1307 51 24 460 1753 603674012 603675269 0.000000e+00 1731.0
40 TraesCS5B01G567300 chr4A 94.625 800 33 7 7968 8763 603682014 603682807 0.000000e+00 1230.0
41 TraesCS5B01G567300 chr4A 96.154 78 3 0 8762 8839 603682892 603682969 2.590000e-25 128.0
42 TraesCS5B01G567300 chr4A 91.071 56 3 1 301 354 603673936 603673991 3.430000e-09 75.0
43 TraesCS5B01G567300 chr4A 100.000 28 0 0 368 395 603673990 603674017 1.600000e-02 52.8
44 TraesCS5B01G567300 chr7B 87.544 2585 320 2 5260 7843 1323006 1325589 0.000000e+00 2988.0
45 TraesCS5B01G567300 chr7B 80.460 348 37 17 8074 8403 1028388 1028054 4.130000e-58 237.0
46 TraesCS5B01G567300 chr7B 82.051 234 28 9 1079 1312 1093833 1093614 4.220000e-43 187.0
47 TraesCS5B01G567300 chr7B 89.583 96 8 1 300 395 1302560 1302653 4.340000e-23 121.0
48 TraesCS5B01G567300 chr7B 85.849 106 11 3 8277 8379 826468 826364 9.390000e-20 110.0
49 TraesCS5B01G567300 chr7A 86.280 2602 338 16 5145 7731 688997582 688994985 0.000000e+00 2809.0
50 TraesCS5B01G567300 chr7A 87.682 1510 149 18 1816 3319 689000065 688998587 0.000000e+00 1724.0
51 TraesCS5B01G567300 chr2A 82.177 1268 209 11 1798 3063 737316525 737315273 0.000000e+00 1074.0
52 TraesCS5B01G567300 chr1D 81.356 1239 196 26 1844 3069 435265419 435264203 0.000000e+00 976.0
53 TraesCS5B01G567300 chr1D 92.593 54 1 2 411 461 10816054 10816107 3.430000e-09 75.0
54 TraesCS5B01G567300 chr1D 87.931 58 7 0 388 445 56065901 56065958 1.590000e-07 69.4
55 TraesCS5B01G567300 chr3D 80.262 1145 189 27 1876 3012 571499903 571498788 0.000000e+00 828.0
56 TraesCS5B01G567300 chr3D 79.578 1185 217 19 1834 3012 571137706 571136541 0.000000e+00 824.0
57 TraesCS5B01G567300 chr3D 78.527 1127 209 23 1895 3012 571371240 571370138 0.000000e+00 710.0
58 TraesCS5B01G567300 chr3D 95.890 73 3 0 3872 3944 129721588 129721516 1.560000e-22 119.0
59 TraesCS5B01G567300 chr3D 94.521 73 3 1 3874 3945 560090203 560090131 2.610000e-20 111.0
60 TraesCS5B01G567300 chr3D 100.000 50 0 0 411 460 390121785 390121736 9.460000e-15 93.5
61 TraesCS5B01G567300 chr3D 96.364 55 0 1 409 461 574387770 574387824 1.220000e-13 89.8
62 TraesCS5B01G567300 chr3B 97.333 75 1 1 3873 3946 161456178 161456104 9.330000e-25 126.0
63 TraesCS5B01G567300 chr3B 94.521 73 3 1 3874 3946 775268362 775268433 2.610000e-20 111.0
64 TraesCS5B01G567300 chr3B 92.982 57 0 1 408 460 485387354 485387298 7.360000e-11 80.5
65 TraesCS5B01G567300 chr2B 97.143 70 2 0 3876 3945 747174225 747174156 1.560000e-22 119.0
66 TraesCS5B01G567300 chr2B 95.775 71 3 0 3876 3946 520972377 520972307 2.020000e-21 115.0
67 TraesCS5B01G567300 chr2B 88.889 63 4 2 402 461 799971999 799972061 3.430000e-09 75.0
68 TraesCS5B01G567300 chr6B 95.833 72 3 0 3874 3945 49666216 49666287 5.610000e-22 117.0
69 TraesCS5B01G567300 chr4B 94.595 74 3 1 3874 3946 145802596 145802523 7.260000e-21 113.0
70 TraesCS5B01G567300 chr7D 92.857 56 1 2 410 462 400855178 400855233 2.650000e-10 78.7
71 TraesCS5B01G567300 chr6D 92.727 55 0 1 411 461 436463256 436463310 9.530000e-10 76.8
72 TraesCS5B01G567300 chr1A 91.379 58 1 3 407 460 582856246 582856303 9.530000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G567300 chr5B 711180238 711189086 8848 True 16342.000000 16342 100.000000 1 8849 1 chr5B.!!$R5 8848
1 TraesCS5B01G567300 chr5B 695787461 695789932 2471 False 2813.000000 2813 87.217000 5259 7729 1 chr5B.!!$F1 2470
2 TraesCS5B01G567300 chr5B 711238510 711244413 5903 True 2275.500000 2931 90.096500 1844 7610 2 chr5B.!!$R8 5766
3 TraesCS5B01G567300 chr5B 695480942 695485161 4219 False 2214.500000 2848 86.498500 1800 7741 2 chr5B.!!$F4 5941
4 TraesCS5B01G567300 chr5B 711130390 711133859 3469 True 1881.500000 3325 88.708500 5259 8637 2 chr5B.!!$R7 3378
5 TraesCS5B01G567300 chr5B 711827280 711828774 1494 False 1349.000000 1349 82.987000 1792 3329 1 chr5B.!!$F2 1537
6 TraesCS5B01G567300 chr5D 555432091 555433587 1496 True 1576.000000 1576 85.649000 1800 3329 1 chr5D.!!$R3 1529
7 TraesCS5B01G567300 chr5D 560532268 560538955 6687 True 1412.666667 2645 84.282667 1056 7747 3 chr5D.!!$R5 6691
8 TraesCS5B01G567300 chr5D 560495024 560504450 9426 False 1343.000000 4835 93.615800 1 8849 10 chr5D.!!$F5 8848
9 TraesCS5B01G567300 chr4A 603673936 603682969 9033 False 1646.475000 4809 95.091875 301 8839 8 chr4A.!!$F1 8538
10 TraesCS5B01G567300 chr7B 1323006 1325589 2583 False 2988.000000 2988 87.544000 5260 7843 1 chr7B.!!$F2 2583
11 TraesCS5B01G567300 chr7A 688994985 689000065 5080 True 2266.500000 2809 86.981000 1816 7731 2 chr7A.!!$R1 5915
12 TraesCS5B01G567300 chr2A 737315273 737316525 1252 True 1074.000000 1074 82.177000 1798 3063 1 chr2A.!!$R1 1265
13 TraesCS5B01G567300 chr1D 435264203 435265419 1216 True 976.000000 976 81.356000 1844 3069 1 chr1D.!!$R1 1225
14 TraesCS5B01G567300 chr3D 571498788 571499903 1115 True 828.000000 828 80.262000 1876 3012 1 chr3D.!!$R6 1136
15 TraesCS5B01G567300 chr3D 571136541 571137706 1165 True 824.000000 824 79.578000 1834 3012 1 chr3D.!!$R4 1178
16 TraesCS5B01G567300 chr3D 571370138 571371240 1102 True 710.000000 710 78.527000 1895 3012 1 chr3D.!!$R5 1117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.033920 GCACCTTGCCCCAAGAAAAG 59.966 55.000 6.54 0.00 43.42 2.27 F
457 504 0.109723 TGGTTTTGGAACGGAGGGAG 59.890 55.000 0.00 0.00 36.61 4.30 F
458 505 0.109913 GGTTTTGGAACGGAGGGAGT 59.890 55.000 0.00 0.00 36.61 3.85 F
1405 1510 1.002087 AGGTTTGTCTCGCTGTTAGGG 59.998 52.381 0.00 0.00 0.00 3.53 F
1559 1785 0.391263 ATCTTTCGGCGTTGGTCTCC 60.391 55.000 6.85 0.00 0.00 3.71 F
1560 1786 1.301401 CTTTCGGCGTTGGTCTCCA 60.301 57.895 6.85 0.00 0.00 3.86 F
2331 2729 2.362077 ACCTTGACAACTGTGATTTGCC 59.638 45.455 0.00 0.00 0.00 4.52 F
3680 4208 1.134175 ACAACAGTTTTGCGGGAACAG 59.866 47.619 0.00 0.00 0.00 3.16 F
4238 4770 1.002684 CGACACAGGGATACGTAGCTC 60.003 57.143 11.10 6.71 37.60 4.09 F
5068 5668 0.792640 CGGAGCAGTGTGAATGTGAC 59.207 55.000 0.00 0.00 0.00 3.67 F
5668 8911 0.458669 GGTGCTGCCATCTTCCATTG 59.541 55.000 0.00 0.00 37.17 2.82 F
5852 9095 1.974236 GGACCTATCTGGCAGTAGCAT 59.026 52.381 15.27 2.87 44.61 3.79 F
6990 10233 2.203070 CTTCCTCCATTCGGGGCG 60.203 66.667 0.00 0.00 37.22 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1206 0.179029 CCCCCAACTTCAACACGTCT 60.179 55.000 0.00 0.00 0.00 4.18 R
1325 1424 0.680280 CGACGAGGAGAGGGGAAGAA 60.680 60.000 0.00 0.00 0.00 2.52 R
1550 1776 1.374758 CTCACCGCTGGAGACCAAC 60.375 63.158 1.50 0.00 34.24 3.77 R
3154 3557 8.068892 AGTCAAAGTGTAGGGACTAATCTAAG 57.931 38.462 0.00 0.00 45.48 2.18 R
3440 3954 4.644234 CCATGCACATAATTTGGTGGACTA 59.356 41.667 10.15 0.00 38.18 2.59 R
3680 4208 5.235516 TGAACTTTTAAGTCGATCCAGGTC 58.764 41.667 0.00 0.00 38.57 3.85 R
3938 4468 0.106894 GGTCCATGGAATCGGTCTCC 59.893 60.000 18.20 7.04 0.00 3.71 R
4942 5542 0.107459 GACAGAGTGGAATGCTCCCC 60.107 60.000 0.00 0.00 41.64 4.81 R
5107 5707 1.451387 CTAACCCATCGGTGGTGGC 60.451 63.158 15.03 0.00 43.71 5.01 R
7062 10305 0.824109 TCATACAAGGTCTGCCCTCG 59.176 55.000 0.00 0.00 45.47 4.63 R
7694 10938 0.325933 TGTCAGGCTGGGACAATCTG 59.674 55.000 15.73 0.00 41.96 2.90 R
7820 11064 2.472695 TTCGACTTTGGGGATGTGAG 57.527 50.000 0.00 0.00 0.00 3.51 R
8325 11738 0.457035 AAGCCTGCACGCATAATTGG 59.543 50.000 10.37 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.016318 AGCAAACAAAAGCAAAAGGGC 58.984 42.857 0.00 0.00 0.00 5.19
75 76 2.354604 GGGCTTCCTTGTCTCTCTCTTG 60.355 54.545 0.00 0.00 0.00 3.02
82 83 3.306641 CCTTGTCTCTCTCTTGAACCCAG 60.307 52.174 0.00 0.00 0.00 4.45
100 101 4.905240 TGCTCACACAATGCACCT 57.095 50.000 0.00 0.00 0.00 4.00
101 102 3.114527 TGCTCACACAATGCACCTT 57.885 47.368 0.00 0.00 0.00 3.50
102 103 0.669619 TGCTCACACAATGCACCTTG 59.330 50.000 0.00 0.00 0.00 3.61
103 104 0.665369 GCTCACACAATGCACCTTGC 60.665 55.000 0.00 0.00 45.29 4.01
104 105 0.038892 CTCACACAATGCACCTTGCC 60.039 55.000 0.00 0.00 44.23 4.52
105 106 1.005867 CACACAATGCACCTTGCCC 60.006 57.895 0.00 0.00 44.23 5.36
106 107 2.209315 ACACAATGCACCTTGCCCC 61.209 57.895 0.00 0.00 44.23 5.80
107 108 2.200930 ACAATGCACCTTGCCCCA 59.799 55.556 0.00 0.00 44.23 4.96
108 109 1.459158 ACAATGCACCTTGCCCCAA 60.459 52.632 0.00 0.00 44.23 4.12
109 110 1.294138 CAATGCACCTTGCCCCAAG 59.706 57.895 0.00 0.00 44.23 3.61
110 111 1.155859 AATGCACCTTGCCCCAAGA 59.844 52.632 6.54 0.00 44.23 3.02
111 112 0.471591 AATGCACCTTGCCCCAAGAA 60.472 50.000 6.54 0.00 44.23 2.52
112 113 0.471591 ATGCACCTTGCCCCAAGAAA 60.472 50.000 6.54 0.00 44.23 2.52
113 114 0.689080 TGCACCTTGCCCCAAGAAAA 60.689 50.000 6.54 0.00 44.23 2.29
114 115 0.033920 GCACCTTGCCCCAAGAAAAG 59.966 55.000 6.54 0.00 43.42 2.27
115 116 0.681175 CACCTTGCCCCAAGAAAAGG 59.319 55.000 6.54 0.00 43.42 3.11
116 117 0.560688 ACCTTGCCCCAAGAAAAGGA 59.439 50.000 7.28 0.00 43.42 3.36
117 118 1.149923 ACCTTGCCCCAAGAAAAGGAT 59.850 47.619 7.28 0.00 43.42 3.24
118 119 1.827344 CCTTGCCCCAAGAAAAGGATC 59.173 52.381 6.54 0.00 43.42 3.36
119 120 2.528564 CTTGCCCCAAGAAAAGGATCA 58.471 47.619 0.00 0.00 43.42 2.92
120 121 2.692709 TGCCCCAAGAAAAGGATCAA 57.307 45.000 0.00 0.00 0.00 2.57
121 122 3.188880 TGCCCCAAGAAAAGGATCAAT 57.811 42.857 0.00 0.00 0.00 2.57
122 123 3.519667 TGCCCCAAGAAAAGGATCAATT 58.480 40.909 0.00 0.00 0.00 2.32
123 124 4.682563 TGCCCCAAGAAAAGGATCAATTA 58.317 39.130 0.00 0.00 0.00 1.40
124 125 5.279685 TGCCCCAAGAAAAGGATCAATTAT 58.720 37.500 0.00 0.00 0.00 1.28
125 126 5.725822 TGCCCCAAGAAAAGGATCAATTATT 59.274 36.000 0.00 0.00 0.00 1.40
126 127 6.900186 TGCCCCAAGAAAAGGATCAATTATTA 59.100 34.615 0.00 0.00 0.00 0.98
127 128 7.568366 TGCCCCAAGAAAAGGATCAATTATTAT 59.432 33.333 0.00 0.00 0.00 1.28
128 129 9.088987 GCCCCAAGAAAAGGATCAATTATTATA 57.911 33.333 0.00 0.00 0.00 0.98
200 247 4.637977 TGGAACTGCGTGCATATTTATTGA 59.362 37.500 0.00 0.00 0.00 2.57
204 251 4.273480 ACTGCGTGCATATTTATTGAGGAC 59.727 41.667 0.00 0.00 0.00 3.85
227 274 4.153835 CCAACATCTGCTCTCTTTTCTCAC 59.846 45.833 0.00 0.00 0.00 3.51
228 275 4.613925 ACATCTGCTCTCTTTTCTCACA 57.386 40.909 0.00 0.00 0.00 3.58
237 284 3.706594 TCTCTTTTCTCACAGTCACAGGT 59.293 43.478 0.00 0.00 0.00 4.00
238 285 4.893524 TCTCTTTTCTCACAGTCACAGGTA 59.106 41.667 0.00 0.00 0.00 3.08
239 286 4.945246 TCTTTTCTCACAGTCACAGGTAC 58.055 43.478 0.00 0.00 0.00 3.34
240 287 4.404394 TCTTTTCTCACAGTCACAGGTACA 59.596 41.667 0.00 0.00 0.00 2.90
241 288 3.728076 TTCTCACAGTCACAGGTACAC 57.272 47.619 0.00 0.00 0.00 2.90
242 289 2.945456 TCTCACAGTCACAGGTACACT 58.055 47.619 0.00 0.00 0.00 3.55
243 290 3.296854 TCTCACAGTCACAGGTACACTT 58.703 45.455 0.00 0.00 0.00 3.16
244 291 3.068165 TCTCACAGTCACAGGTACACTTG 59.932 47.826 0.00 0.00 0.00 3.16
245 292 3.028130 TCACAGTCACAGGTACACTTGA 58.972 45.455 0.00 0.00 0.00 3.02
246 293 3.449377 TCACAGTCACAGGTACACTTGAA 59.551 43.478 0.00 0.00 0.00 2.69
247 294 4.100963 TCACAGTCACAGGTACACTTGAAT 59.899 41.667 0.00 0.00 0.00 2.57
248 295 4.212004 CACAGTCACAGGTACACTTGAATG 59.788 45.833 12.83 12.83 37.82 2.67
249 296 3.187227 CAGTCACAGGTACACTTGAATGC 59.813 47.826 0.00 0.00 31.21 3.56
250 297 3.071602 AGTCACAGGTACACTTGAATGCT 59.928 43.478 0.00 0.00 0.00 3.79
251 298 3.433615 GTCACAGGTACACTTGAATGCTC 59.566 47.826 0.00 0.00 0.00 4.26
252 299 3.070878 TCACAGGTACACTTGAATGCTCA 59.929 43.478 0.00 0.00 0.00 4.26
253 300 3.187227 CACAGGTACACTTGAATGCTCAC 59.813 47.826 0.00 0.00 0.00 3.51
254 301 3.181455 ACAGGTACACTTGAATGCTCACA 60.181 43.478 0.00 0.00 0.00 3.58
255 302 4.005650 CAGGTACACTTGAATGCTCACAT 58.994 43.478 0.00 0.00 38.49 3.21
256 303 4.005650 AGGTACACTTGAATGCTCACATG 58.994 43.478 0.00 0.00 36.36 3.21
257 304 3.426695 GGTACACTTGAATGCTCACATGC 60.427 47.826 0.00 0.00 36.36 4.06
267 314 3.056588 TGCTCACATGCATACACTTGA 57.943 42.857 0.00 0.00 38.12 3.02
268 315 3.410508 TGCTCACATGCATACACTTGAA 58.589 40.909 0.00 0.00 38.12 2.69
269 316 3.819902 TGCTCACATGCATACACTTGAAA 59.180 39.130 0.00 0.00 38.12 2.69
270 317 4.460034 TGCTCACATGCATACACTTGAAAT 59.540 37.500 0.00 0.00 38.12 2.17
271 318 5.047872 TGCTCACATGCATACACTTGAAATT 60.048 36.000 0.00 0.00 38.12 1.82
272 319 5.865552 GCTCACATGCATACACTTGAAATTT 59.134 36.000 0.00 0.00 0.00 1.82
273 320 6.183360 GCTCACATGCATACACTTGAAATTTG 60.183 38.462 0.00 0.00 0.00 2.32
274 321 6.747125 TCACATGCATACACTTGAAATTTGT 58.253 32.000 0.00 0.00 0.00 2.83
275 322 7.208777 TCACATGCATACACTTGAAATTTGTT 58.791 30.769 0.00 0.00 0.00 2.83
276 323 7.169476 TCACATGCATACACTTGAAATTTGTTG 59.831 33.333 0.00 0.00 0.00 3.33
277 324 6.985645 ACATGCATACACTTGAAATTTGTTGT 59.014 30.769 0.00 0.00 0.00 3.32
278 325 7.495279 ACATGCATACACTTGAAATTTGTTGTT 59.505 29.630 0.00 0.00 0.00 2.83
279 326 7.840342 TGCATACACTTGAAATTTGTTGTTT 57.160 28.000 0.00 0.00 0.00 2.83
280 327 8.932945 TGCATACACTTGAAATTTGTTGTTTA 57.067 26.923 0.00 0.00 0.00 2.01
281 328 8.812329 TGCATACACTTGAAATTTGTTGTTTAC 58.188 29.630 0.00 0.00 0.00 2.01
282 329 9.030301 GCATACACTTGAAATTTGTTGTTTACT 57.970 29.630 0.00 0.00 0.00 2.24
286 333 9.705290 ACACTTGAAATTTGTTGTTTACTTTCT 57.295 25.926 0.00 0.00 0.00 2.52
289 336 9.885743 CTTGAAATTTGTTGTTTACTTTCTTCG 57.114 29.630 0.00 0.00 0.00 3.79
290 337 8.973835 TGAAATTTGTTGTTTACTTTCTTCGT 57.026 26.923 0.00 0.00 0.00 3.85
294 341 9.458374 AATTTGTTGTTTACTTTCTTCGTATGG 57.542 29.630 0.00 0.00 0.00 2.74
295 342 7.556733 TTGTTGTTTACTTTCTTCGTATGGT 57.443 32.000 0.00 0.00 0.00 3.55
296 343 7.181143 TGTTGTTTACTTTCTTCGTATGGTC 57.819 36.000 0.00 0.00 0.00 4.02
297 344 6.762187 TGTTGTTTACTTTCTTCGTATGGTCA 59.238 34.615 0.00 0.00 0.00 4.02
298 345 6.774354 TGTTTACTTTCTTCGTATGGTCAC 57.226 37.500 0.00 0.00 0.00 3.67
299 346 5.697633 TGTTTACTTTCTTCGTATGGTCACC 59.302 40.000 0.00 0.00 0.00 4.02
335 382 3.763360 TGAATATGTCCCCTTGCAACTTG 59.237 43.478 0.00 0.00 0.00 3.16
336 383 3.737559 ATATGTCCCCTTGCAACTTGA 57.262 42.857 0.00 0.00 0.00 3.02
337 384 1.915141 ATGTCCCCTTGCAACTTGAG 58.085 50.000 0.00 0.00 0.00 3.02
338 385 0.550914 TGTCCCCTTGCAACTTGAGT 59.449 50.000 0.00 0.00 0.00 3.41
339 386 1.239347 GTCCCCTTGCAACTTGAGTC 58.761 55.000 0.00 0.00 0.00 3.36
340 387 0.843309 TCCCCTTGCAACTTGAGTCA 59.157 50.000 0.00 0.00 0.00 3.41
341 388 1.202806 TCCCCTTGCAACTTGAGTCAG 60.203 52.381 0.00 0.00 0.00 3.51
342 389 0.595095 CCCTTGCAACTTGAGTCAGC 59.405 55.000 0.00 0.00 0.00 4.26
343 390 0.595095 CCTTGCAACTTGAGTCAGCC 59.405 55.000 0.00 0.00 0.00 4.85
344 391 1.602311 CTTGCAACTTGAGTCAGCCT 58.398 50.000 0.00 0.00 0.00 4.58
345 392 1.952296 CTTGCAACTTGAGTCAGCCTT 59.048 47.619 0.00 0.00 0.00 4.35
358 405 0.170561 CAGCCTTCAAGCAGTGATGC 59.829 55.000 0.00 0.00 35.70 3.91
393 440 6.668541 AATGTTCGTTCATAGACAGATTGG 57.331 37.500 0.00 0.00 0.00 3.16
394 441 4.503910 TGTTCGTTCATAGACAGATTGGG 58.496 43.478 0.00 0.00 0.00 4.12
395 442 4.020573 TGTTCGTTCATAGACAGATTGGGT 60.021 41.667 0.00 0.00 0.00 4.51
396 443 4.819105 TCGTTCATAGACAGATTGGGTT 57.181 40.909 0.00 0.00 0.00 4.11
397 444 4.503910 TCGTTCATAGACAGATTGGGTTG 58.496 43.478 0.00 0.00 0.00 3.77
398 445 3.623060 CGTTCATAGACAGATTGGGTTGG 59.377 47.826 0.00 0.00 0.00 3.77
399 446 3.281727 TCATAGACAGATTGGGTTGGC 57.718 47.619 0.00 0.00 0.00 4.52
400 447 2.846206 TCATAGACAGATTGGGTTGGCT 59.154 45.455 0.00 0.00 36.44 4.75
401 448 3.266772 TCATAGACAGATTGGGTTGGCTT 59.733 43.478 0.00 0.00 33.83 4.35
402 449 2.683211 AGACAGATTGGGTTGGCTTT 57.317 45.000 0.00 0.00 0.00 3.51
403 450 2.962859 AGACAGATTGGGTTGGCTTTT 58.037 42.857 0.00 0.00 0.00 2.27
404 451 2.629617 AGACAGATTGGGTTGGCTTTTG 59.370 45.455 0.00 0.00 0.00 2.44
405 452 2.627699 GACAGATTGGGTTGGCTTTTGA 59.372 45.455 0.00 0.00 0.00 2.69
406 453 3.242011 ACAGATTGGGTTGGCTTTTGAT 58.758 40.909 0.00 0.00 0.00 2.57
407 454 3.647590 ACAGATTGGGTTGGCTTTTGATT 59.352 39.130 0.00 0.00 0.00 2.57
408 455 4.837860 ACAGATTGGGTTGGCTTTTGATTA 59.162 37.500 0.00 0.00 0.00 1.75
409 456 5.170748 CAGATTGGGTTGGCTTTTGATTAC 58.829 41.667 0.00 0.00 0.00 1.89
410 457 5.047092 CAGATTGGGTTGGCTTTTGATTACT 60.047 40.000 0.00 0.00 0.00 2.24
411 458 6.152661 CAGATTGGGTTGGCTTTTGATTACTA 59.847 38.462 0.00 0.00 0.00 1.82
412 459 5.715434 TTGGGTTGGCTTTTGATTACTAC 57.285 39.130 0.00 0.00 0.00 2.73
413 460 4.993028 TGGGTTGGCTTTTGATTACTACT 58.007 39.130 0.00 0.00 0.00 2.57
414 461 5.007682 TGGGTTGGCTTTTGATTACTACTC 58.992 41.667 0.00 0.00 0.00 2.59
415 462 4.398358 GGGTTGGCTTTTGATTACTACTCC 59.602 45.833 0.00 0.00 0.00 3.85
416 463 4.398358 GGTTGGCTTTTGATTACTACTCCC 59.602 45.833 0.00 0.00 0.00 4.30
417 464 5.254115 GTTGGCTTTTGATTACTACTCCCT 58.746 41.667 0.00 0.00 0.00 4.20
418 465 5.099042 TGGCTTTTGATTACTACTCCCTC 57.901 43.478 0.00 0.00 0.00 4.30
419 466 4.080526 TGGCTTTTGATTACTACTCCCTCC 60.081 45.833 0.00 0.00 0.00 4.30
420 467 4.120589 GCTTTTGATTACTACTCCCTCCG 58.879 47.826 0.00 0.00 0.00 4.63
421 468 4.382793 GCTTTTGATTACTACTCCCTCCGT 60.383 45.833 0.00 0.00 0.00 4.69
422 469 5.731591 CTTTTGATTACTACTCCCTCCGTT 58.268 41.667 0.00 0.00 0.00 4.44
423 470 4.996788 TTGATTACTACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
424 471 3.294214 TGATTACTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
425 472 2.905415 TTACTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
426 473 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
427 474 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
428 475 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
429 476 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
430 477 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
431 478 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
432 479 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
433 480 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
434 481 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
435 482 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
436 483 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
437 484 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
438 485 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
439 486 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
440 487 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
441 488 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
442 489 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
443 490 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
444 491 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
445 492 4.024725 TCCAAATTACTCGTCGTGGTTTTG 60.025 41.667 0.00 5.81 0.00 2.44
446 493 4.215965 CAAATTACTCGTCGTGGTTTTGG 58.784 43.478 0.00 0.00 0.00 3.28
447 494 2.886862 TTACTCGTCGTGGTTTTGGA 57.113 45.000 0.00 0.00 0.00 3.53
448 495 2.886862 TACTCGTCGTGGTTTTGGAA 57.113 45.000 0.00 0.00 0.00 3.53
449 496 1.292992 ACTCGTCGTGGTTTTGGAAC 58.707 50.000 0.00 0.00 34.96 3.62
450 497 0.231279 CTCGTCGTGGTTTTGGAACG 59.769 55.000 0.00 0.00 36.61 3.95
451 498 1.152989 TCGTCGTGGTTTTGGAACGG 61.153 55.000 0.00 0.00 37.87 4.44
452 499 1.152989 CGTCGTGGTTTTGGAACGGA 61.153 55.000 0.00 0.00 37.87 4.69
453 500 0.584876 GTCGTGGTTTTGGAACGGAG 59.415 55.000 0.00 0.00 37.87 4.63
454 501 0.533308 TCGTGGTTTTGGAACGGAGG 60.533 55.000 0.00 0.00 37.87 4.30
455 502 1.512156 CGTGGTTTTGGAACGGAGGG 61.512 60.000 0.00 0.00 36.61 4.30
456 503 0.179012 GTGGTTTTGGAACGGAGGGA 60.179 55.000 0.00 0.00 36.61 4.20
457 504 0.109723 TGGTTTTGGAACGGAGGGAG 59.890 55.000 0.00 0.00 36.61 4.30
458 505 0.109913 GGTTTTGGAACGGAGGGAGT 59.890 55.000 0.00 0.00 36.61 3.85
459 506 1.348696 GGTTTTGGAACGGAGGGAGTA 59.651 52.381 0.00 0.00 36.61 2.59
460 507 2.026542 GGTTTTGGAACGGAGGGAGTAT 60.027 50.000 0.00 0.00 36.61 2.12
461 508 3.560668 GGTTTTGGAACGGAGGGAGTATT 60.561 47.826 0.00 0.00 36.61 1.89
462 509 3.622166 TTTGGAACGGAGGGAGTATTC 57.378 47.619 0.00 0.00 0.00 1.75
482 529 4.137116 TCGGCTATTACAGTTTCAGCAT 57.863 40.909 0.00 0.00 33.86 3.79
483 530 4.119862 TCGGCTATTACAGTTTCAGCATC 58.880 43.478 0.00 0.00 33.86 3.91
521 577 4.789095 TTCGTTCTGCTGTTAGTGTTTC 57.211 40.909 0.00 0.00 0.00 2.78
703 763 6.967199 GCAGTTAGTTTACATATTCAGTTGCC 59.033 38.462 0.00 0.00 0.00 4.52
903 978 4.405358 TCTCTTGTTTTGAACCCAATGCTT 59.595 37.500 0.00 0.00 31.46 3.91
904 979 5.096443 TCTTGTTTTGAACCCAATGCTTT 57.904 34.783 0.00 0.00 31.46 3.51
905 980 4.874966 TCTTGTTTTGAACCCAATGCTTTG 59.125 37.500 5.37 5.37 31.46 2.77
906 981 2.941720 TGTTTTGAACCCAATGCTTTGC 59.058 40.909 6.81 0.00 31.46 3.68
907 982 1.863267 TTTGAACCCAATGCTTTGCG 58.137 45.000 6.81 1.28 31.46 4.85
986 1061 3.276857 CACAGCACAGGAGCAATATTCT 58.723 45.455 0.00 0.00 36.85 2.40
1107 1206 2.703536 TCTGCAGTGGAGGTACAAAGAA 59.296 45.455 14.67 0.00 0.00 2.52
1355 1460 4.849329 CTCGTCGCTGGCCGTACC 62.849 72.222 0.00 0.00 38.35 3.34
1358 1463 3.814268 GTCGCTGGCCGTACCGTA 61.814 66.667 0.00 0.00 43.94 4.02
1359 1464 3.814268 TCGCTGGCCGTACCGTAC 61.814 66.667 0.00 0.00 43.94 3.67
1360 1465 4.118995 CGCTGGCCGTACCGTACA 62.119 66.667 9.34 0.00 43.94 2.90
1404 1509 2.457366 AGGTTTGTCTCGCTGTTAGG 57.543 50.000 0.00 0.00 0.00 2.69
1405 1510 1.002087 AGGTTTGTCTCGCTGTTAGGG 59.998 52.381 0.00 0.00 0.00 3.53
1406 1511 1.439679 GTTTGTCTCGCTGTTAGGGG 58.560 55.000 0.00 0.00 0.00 4.79
1483 1588 2.967201 CAGCTGAGATCTCAATCCCTCT 59.033 50.000 25.09 12.47 39.39 3.69
1559 1785 0.391263 ATCTTTCGGCGTTGGTCTCC 60.391 55.000 6.85 0.00 0.00 3.71
1560 1786 1.301401 CTTTCGGCGTTGGTCTCCA 60.301 57.895 6.85 0.00 0.00 3.86
1615 1841 7.451877 TCCAGAGACTACTCAGTATTTTCTTGT 59.548 37.037 0.00 0.00 44.79 3.16
1616 1842 7.543868 CCAGAGACTACTCAGTATTTTCTTGTG 59.456 40.741 0.00 0.00 44.79 3.33
1618 1844 9.030452 AGAGACTACTCAGTATTTTCTTGTGAT 57.970 33.333 0.00 0.00 44.79 3.06
1691 1917 8.511604 AAAGATAGGGATCCATTAATTATGCG 57.488 34.615 15.23 0.00 32.60 4.73
1763 2025 9.229784 CAAATGTCTTTGTGTATCTGATTATGC 57.770 33.333 0.00 0.00 37.54 3.14
1765 2027 6.413892 TGTCTTTGTGTATCTGATTATGCCA 58.586 36.000 0.00 0.00 0.00 4.92
1766 2028 7.056006 TGTCTTTGTGTATCTGATTATGCCAT 58.944 34.615 0.00 0.00 0.00 4.40
1767 2029 7.012610 TGTCTTTGTGTATCTGATTATGCCATG 59.987 37.037 0.00 0.00 0.00 3.66
1778 2167 3.301794 TTATGCCATGGCTCAATCAGT 57.698 42.857 35.53 14.18 42.51 3.41
2149 2544 5.704515 GGATATCTCCATCATTCCAGTTGTG 59.295 44.000 2.05 0.00 41.64 3.33
2331 2729 2.362077 ACCTTGACAACTGTGATTTGCC 59.638 45.455 0.00 0.00 0.00 4.52
3154 3557 8.958119 TTCATAAATTGTACTCTGGTATGGTC 57.042 34.615 0.00 0.00 0.00 4.02
3186 3590 5.765182 AGTCCCTACACTTTGACTTTTCATG 59.235 40.000 0.00 0.00 34.53 3.07
3375 3782 5.537300 TTCTTATCCTTCGATTCCTGGAG 57.463 43.478 0.00 0.00 31.59 3.86
3386 3793 6.978674 TCGATTCCTGGAGTTAATGTCTAT 57.021 37.500 0.00 0.00 0.00 1.98
3499 4013 6.472016 TCTAGTGAGAATTTGTGGCATTACA 58.528 36.000 0.00 0.00 0.00 2.41
3680 4208 1.134175 ACAACAGTTTTGCGGGAACAG 59.866 47.619 0.00 0.00 0.00 3.16
3693 4221 1.187087 GGAACAGACCTGGATCGACT 58.813 55.000 0.00 0.00 34.19 4.18
3740 4270 5.458779 AGAAACAAAGAAATTACAGCGCAAC 59.541 36.000 11.47 0.00 0.00 4.17
3793 4323 6.040955 CCATGAGCACTAATCCTTACACTCTA 59.959 42.308 0.00 0.00 0.00 2.43
3808 4338 4.256180 CTACCCATGGCCCTCCGC 62.256 72.222 6.09 0.00 34.14 5.54
3823 4353 3.892588 CCCTCCGCTAGTCTAGAATCTTT 59.107 47.826 11.27 0.00 0.00 2.52
3829 4359 5.044558 CGCTAGTCTAGAATCTTTTGGGTC 58.955 45.833 11.27 0.00 0.00 4.46
3831 4361 3.863041 AGTCTAGAATCTTTTGGGTCGC 58.137 45.455 0.00 0.00 0.00 5.19
3871 4401 6.266103 ACATCATTATTGTGATTCCATGGACC 59.734 38.462 15.91 10.21 36.72 4.46
3873 4403 6.375418 TCATTATTGTGATTCCATGGACCAT 58.625 36.000 15.91 6.24 0.00 3.55
3874 4404 6.840181 TCATTATTGTGATTCCATGGACCATT 59.160 34.615 15.91 8.00 0.00 3.16
3876 4406 7.493499 TTATTGTGATTCCATGGACCATTTT 57.507 32.000 15.91 6.94 0.00 1.82
3930 4460 9.569122 TCTACCTTATATATTTCAAAACAGGCC 57.431 33.333 0.00 0.00 0.00 5.19
3931 4461 7.272037 ACCTTATATATTTCAAAACAGGCCG 57.728 36.000 0.00 0.00 0.00 6.13
3932 4462 6.831868 ACCTTATATATTTCAAAACAGGCCGT 59.168 34.615 0.00 0.00 0.00 5.68
3933 4463 7.994334 ACCTTATATATTTCAAAACAGGCCGTA 59.006 33.333 0.00 0.00 0.00 4.02
3934 4464 8.504005 CCTTATATATTTCAAAACAGGCCGTAG 58.496 37.037 0.00 0.00 0.00 3.51
3935 4465 4.632538 ATATTTCAAAACAGGCCGTAGC 57.367 40.909 0.00 0.00 38.76 3.58
3956 4486 3.688553 GGAGACCGATTCCATGGAC 57.311 57.895 15.91 2.61 34.74 4.02
4056 4586 3.134081 CCAGGTATTGTCGTGTATTCCCT 59.866 47.826 0.00 0.00 0.00 4.20
4089 4620 1.152819 TCGTCCCTATCCCCACTCG 60.153 63.158 0.00 0.00 0.00 4.18
4154 4685 2.637382 TGCCCTGTCTGAGTTGTTGATA 59.363 45.455 0.00 0.00 0.00 2.15
4231 4763 1.518572 CGCCACGACACAGGGATAC 60.519 63.158 0.00 0.00 0.00 2.24
4238 4770 1.002684 CGACACAGGGATACGTAGCTC 60.003 57.143 11.10 6.71 37.60 4.09
4240 4772 1.749634 ACACAGGGATACGTAGCTCAC 59.250 52.381 14.07 1.50 37.60 3.51
4433 5025 1.080366 GCGACGTGGTCATGTGGTA 60.080 57.895 0.00 0.00 32.09 3.25
4495 5095 1.308216 ATGAGGGACCAAGGGAGGG 60.308 63.158 0.00 0.00 0.00 4.30
4561 5161 2.358615 GCGGTCACACATGCCAGA 60.359 61.111 0.00 0.00 0.00 3.86
4673 5273 5.023533 TGGCTCAGATAAGACATAACCAC 57.976 43.478 0.00 0.00 0.00 4.16
4863 5463 7.209471 TCCAGTGGTACAATTTTTATGACAC 57.791 36.000 9.54 0.00 44.16 3.67
4942 5542 1.330521 CGCCATGTAAATTGGGACGAG 59.669 52.381 0.00 0.00 34.66 4.18
5068 5668 0.792640 CGGAGCAGTGTGAATGTGAC 59.207 55.000 0.00 0.00 0.00 3.67
5069 5669 1.606480 CGGAGCAGTGTGAATGTGACT 60.606 52.381 0.00 0.00 0.00 3.41
5070 5670 2.072298 GGAGCAGTGTGAATGTGACTC 58.928 52.381 0.00 0.00 0.00 3.36
5072 5672 1.160137 GCAGTGTGAATGTGACTCCC 58.840 55.000 0.00 0.00 0.00 4.30
5107 5707 2.604382 CCAACTTTGGGGCAGGGG 60.604 66.667 0.00 0.00 44.70 4.79
5321 8564 2.300152 CTCTGCAGGTTAGTCCAAGTCA 59.700 50.000 15.13 0.00 39.02 3.41
5350 8593 4.771114 TTCAAAACTCCTCCAGAACTCA 57.229 40.909 0.00 0.00 0.00 3.41
5668 8911 0.458669 GGTGCTGCCATCTTCCATTG 59.541 55.000 0.00 0.00 37.17 2.82
5745 8988 9.436957 TCACTTCCTAAGAATTTTCATACACTC 57.563 33.333 0.00 0.00 0.00 3.51
5852 9095 1.974236 GGACCTATCTGGCAGTAGCAT 59.026 52.381 15.27 2.87 44.61 3.79
5920 9163 4.402056 TTTCTCAATCTATCCGGGTGTC 57.598 45.455 0.00 0.00 0.00 3.67
6087 9330 3.857157 AAGCTCACCAAACTACCTGAA 57.143 42.857 0.00 0.00 0.00 3.02
6172 9415 3.075884 CCAATTGATTTTGGCCACCTTG 58.924 45.455 3.88 1.55 39.76 3.61
6261 9504 7.232534 TGCCAACTTAATCATTTGAAGTACCTT 59.767 33.333 0.00 0.00 33.13 3.50
6302 9545 4.251103 ACCTTGAAAAACTCCCTGACTT 57.749 40.909 0.00 0.00 0.00 3.01
6780 10023 5.635280 ACTGCGTGATAAATCAGATATTCGG 59.365 40.000 0.00 0.00 37.51 4.30
6990 10233 2.203070 CTTCCTCCATTCGGGGCG 60.203 66.667 0.00 0.00 37.22 6.13
7062 10305 6.294010 GGAAAATCGGTAAGGAATTCTATGGC 60.294 42.308 5.23 0.00 0.00 4.40
7230 10473 6.893020 AAGTTGAAGTTCCTACCATATCCT 57.107 37.500 0.00 0.00 0.00 3.24
7470 10714 3.860378 GCTTCACTTCTCTCACTGGACTG 60.860 52.174 0.00 0.00 0.00 3.51
7612 10856 5.794894 AGAATCTCACCGCTCTTAGAAAAA 58.205 37.500 0.00 0.00 0.00 1.94
7820 11064 2.027385 GGAGGATGCCCACAAGATTTC 58.973 52.381 0.00 0.00 33.88 2.17
7885 11129 7.472334 AAATTGTTGGTCTCTTATGCAGAAT 57.528 32.000 0.00 0.00 0.00 2.40
7924 11168 2.291043 GCAGGAGAGGAACGGGGAA 61.291 63.158 0.00 0.00 0.00 3.97
7955 11199 1.202486 GGTAATTCCATCTCGACGCCA 60.202 52.381 0.00 0.00 35.97 5.69
8017 11292 4.021925 GTTGCCGCCCACCTCTCT 62.022 66.667 0.00 0.00 0.00 3.10
8018 11293 4.020617 TTGCCGCCCACCTCTCTG 62.021 66.667 0.00 0.00 0.00 3.35
8108 11465 6.472163 AGTGTTGCATTAGAACTTTTGTTTCG 59.528 34.615 0.00 0.00 43.66 3.46
8109 11466 5.746245 TGTTGCATTAGAACTTTTGTTTCGG 59.254 36.000 0.00 0.00 43.66 4.30
8184 11545 8.649973 AAGATGCAGTATTAGTTGTAGCTAAC 57.350 34.615 0.00 0.00 34.25 2.34
8253 11634 7.117812 CGTCACTGGAATACAACTTCTTATTGT 59.882 37.037 0.00 0.00 42.78 2.71
8325 11738 7.263100 TGACATCCACATGACTATTATTTGC 57.737 36.000 0.00 0.00 33.72 3.68
8428 11846 3.297134 TCCAAGGAGCAGTTTCTTTGT 57.703 42.857 0.00 0.00 33.67 2.83
8461 11879 1.133853 GCTGGGATTCTCAAGGAGCAT 60.134 52.381 0.00 0.00 0.00 3.79
8484 11924 0.034089 TGATGACGGAGGAGCTCTCA 60.034 55.000 14.64 9.41 44.19 3.27
8507 11947 5.730296 AGTAGCTGACTGACTAATGTTGT 57.270 39.130 0.00 0.00 36.87 3.32
8508 11948 6.835819 AGTAGCTGACTGACTAATGTTGTA 57.164 37.500 0.00 0.00 36.87 2.41
8509 11949 6.622549 AGTAGCTGACTGACTAATGTTGTAC 58.377 40.000 0.00 0.00 36.87 2.90
8514 11954 7.039644 AGCTGACTGACTAATGTTGTACTACTT 60.040 37.037 8.88 0.00 0.00 2.24
8651 12094 5.827666 TGCTTCATTCATTCATGTATGCAG 58.172 37.500 7.41 2.66 36.08 4.41
8658 12101 9.346005 TCATTCATTCATGTATGCAGTTTATCT 57.654 29.630 7.41 0.00 36.08 1.98
8810 12339 7.670979 TGTGAGCAGATGGCCATTTAATTATAT 59.329 33.333 21.84 0.00 46.50 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.328931 TGGGCAGGGCATTCAAATTAAAA 59.671 39.130 0.00 0.00 0.00 1.52
57 58 4.562552 GGGTTCAAGAGAGAGACAAGGAAG 60.563 50.000 0.00 0.00 0.00 3.46
75 76 1.267806 CATTGTGTGAGCACTGGGTTC 59.732 52.381 1.99 0.00 45.44 3.62
95 96 0.033920 CTTTTCTTGGGGCAAGGTGC 59.966 55.000 0.00 0.00 41.33 5.01
96 97 0.681175 CCTTTTCTTGGGGCAAGGTG 59.319 55.000 0.00 0.00 41.33 4.00
98 99 1.827344 GATCCTTTTCTTGGGGCAAGG 59.173 52.381 0.00 0.00 41.33 3.61
99 100 2.528564 TGATCCTTTTCTTGGGGCAAG 58.471 47.619 0.00 0.00 42.25 4.01
100 101 2.692709 TGATCCTTTTCTTGGGGCAA 57.307 45.000 0.00 0.00 0.00 4.52
101 102 2.692709 TTGATCCTTTTCTTGGGGCA 57.307 45.000 0.00 0.00 0.00 5.36
102 103 5.876651 ATAATTGATCCTTTTCTTGGGGC 57.123 39.130 0.00 0.00 0.00 5.80
128 129 9.846248 GAGTTTATGCAAGAAAAGAACACATAT 57.154 29.630 0.00 0.00 0.00 1.78
135 136 6.040842 AGGCAAGAGTTTATGCAAGAAAAGAA 59.959 34.615 0.00 0.00 44.32 2.52
145 146 2.097142 CAGCAGAGGCAAGAGTTTATGC 59.903 50.000 0.00 0.00 44.61 3.14
185 186 5.065859 TGTTGGTCCTCAATAAATATGCACG 59.934 40.000 0.00 0.00 37.73 5.34
204 251 4.153835 GTGAGAAAAGAGAGCAGATGTTGG 59.846 45.833 0.00 0.00 0.00 3.77
227 274 3.187227 GCATTCAAGTGTACCTGTGACTG 59.813 47.826 0.00 0.00 0.00 3.51
228 275 3.071602 AGCATTCAAGTGTACCTGTGACT 59.928 43.478 0.00 0.00 0.00 3.41
237 284 3.410508 TGCATGTGAGCATTCAAGTGTA 58.589 40.909 0.00 0.00 40.11 2.90
238 285 2.232399 TGCATGTGAGCATTCAAGTGT 58.768 42.857 0.00 0.00 40.11 3.55
248 295 4.424061 TTTCAAGTGTATGCATGTGAGC 57.576 40.909 10.16 0.00 0.00 4.26
249 296 6.864685 ACAAATTTCAAGTGTATGCATGTGAG 59.135 34.615 10.16 0.00 0.00 3.51
250 297 6.747125 ACAAATTTCAAGTGTATGCATGTGA 58.253 32.000 10.16 2.28 0.00 3.58
251 298 7.042590 ACAACAAATTTCAAGTGTATGCATGTG 60.043 33.333 10.16 0.00 0.00 3.21
252 299 6.985645 ACAACAAATTTCAAGTGTATGCATGT 59.014 30.769 10.16 0.00 0.00 3.21
253 300 7.410800 ACAACAAATTTCAAGTGTATGCATG 57.589 32.000 10.16 0.00 0.00 4.06
254 301 8.436046 AAACAACAAATTTCAAGTGTATGCAT 57.564 26.923 3.79 3.79 0.00 3.96
255 302 7.840342 AAACAACAAATTTCAAGTGTATGCA 57.160 28.000 0.00 0.00 0.00 3.96
256 303 9.030301 AGTAAACAACAAATTTCAAGTGTATGC 57.970 29.630 0.00 0.00 0.00 3.14
260 307 9.705290 AGAAAGTAAACAACAAATTTCAAGTGT 57.295 25.926 0.00 0.00 0.00 3.55
263 310 9.885743 CGAAGAAAGTAAACAACAAATTTCAAG 57.114 29.630 0.00 0.00 0.00 3.02
264 311 9.413048 ACGAAGAAAGTAAACAACAAATTTCAA 57.587 25.926 0.00 0.00 0.00 2.69
265 312 8.973835 ACGAAGAAAGTAAACAACAAATTTCA 57.026 26.923 0.00 0.00 0.00 2.69
268 315 9.458374 CCATACGAAGAAAGTAAACAACAAATT 57.542 29.630 0.00 0.00 0.00 1.82
269 316 8.626526 ACCATACGAAGAAAGTAAACAACAAAT 58.373 29.630 0.00 0.00 0.00 2.32
270 317 7.987649 ACCATACGAAGAAAGTAAACAACAAA 58.012 30.769 0.00 0.00 0.00 2.83
271 318 7.280428 TGACCATACGAAGAAAGTAAACAACAA 59.720 33.333 0.00 0.00 0.00 2.83
272 319 6.762187 TGACCATACGAAGAAAGTAAACAACA 59.238 34.615 0.00 0.00 0.00 3.33
273 320 7.067728 GTGACCATACGAAGAAAGTAAACAAC 58.932 38.462 0.00 0.00 0.00 3.32
274 321 6.203338 GGTGACCATACGAAGAAAGTAAACAA 59.797 38.462 0.00 0.00 0.00 2.83
275 322 5.697633 GGTGACCATACGAAGAAAGTAAACA 59.302 40.000 0.00 0.00 0.00 2.83
276 323 5.930569 AGGTGACCATACGAAGAAAGTAAAC 59.069 40.000 3.63 0.00 0.00 2.01
277 324 6.105397 AGGTGACCATACGAAGAAAGTAAA 57.895 37.500 3.63 0.00 0.00 2.01
278 325 5.733620 AGGTGACCATACGAAGAAAGTAA 57.266 39.130 3.63 0.00 0.00 2.24
279 326 5.711506 TGTAGGTGACCATACGAAGAAAGTA 59.288 40.000 3.63 0.00 0.00 2.24
280 327 4.525487 TGTAGGTGACCATACGAAGAAAGT 59.475 41.667 3.63 0.00 0.00 2.66
281 328 4.863131 GTGTAGGTGACCATACGAAGAAAG 59.137 45.833 3.63 0.00 0.00 2.62
282 329 4.281435 TGTGTAGGTGACCATACGAAGAAA 59.719 41.667 3.63 0.00 0.00 2.52
283 330 3.827876 TGTGTAGGTGACCATACGAAGAA 59.172 43.478 3.63 0.00 0.00 2.52
284 331 3.423749 TGTGTAGGTGACCATACGAAGA 58.576 45.455 3.63 0.00 0.00 2.87
285 332 3.861276 TGTGTAGGTGACCATACGAAG 57.139 47.619 3.63 0.00 0.00 3.79
286 333 4.021229 AGATGTGTAGGTGACCATACGAA 58.979 43.478 3.63 0.00 0.00 3.85
287 334 3.380320 CAGATGTGTAGGTGACCATACGA 59.620 47.826 3.63 0.00 0.00 3.43
288 335 3.130516 ACAGATGTGTAGGTGACCATACG 59.869 47.826 3.63 0.00 34.05 3.06
289 336 4.737855 ACAGATGTGTAGGTGACCATAC 57.262 45.455 3.63 4.40 34.05 2.39
290 337 5.023452 AGAACAGATGTGTAGGTGACCATA 58.977 41.667 3.63 0.00 35.08 2.74
291 338 3.840666 AGAACAGATGTGTAGGTGACCAT 59.159 43.478 3.63 0.00 35.08 3.55
292 339 3.006859 CAGAACAGATGTGTAGGTGACCA 59.993 47.826 3.63 0.00 35.08 4.02
293 340 3.258372 TCAGAACAGATGTGTAGGTGACC 59.742 47.826 0.00 0.00 35.08 4.02
294 341 4.521130 TCAGAACAGATGTGTAGGTGAC 57.479 45.455 0.00 0.00 35.08 3.67
295 342 5.745312 ATTCAGAACAGATGTGTAGGTGA 57.255 39.130 0.00 0.00 35.08 4.02
296 343 7.044181 ACATATTCAGAACAGATGTGTAGGTG 58.956 38.462 0.00 0.00 35.08 4.00
297 344 7.187824 ACATATTCAGAACAGATGTGTAGGT 57.812 36.000 0.00 0.00 35.08 3.08
298 345 6.703607 GGACATATTCAGAACAGATGTGTAGG 59.296 42.308 10.52 0.00 35.08 3.18
299 346 6.703607 GGGACATATTCAGAACAGATGTGTAG 59.296 42.308 10.52 0.00 35.08 2.74
335 382 1.155042 CACTGCTTGAAGGCTGACTC 58.845 55.000 0.00 0.00 35.59 3.36
336 383 0.761187 TCACTGCTTGAAGGCTGACT 59.239 50.000 0.00 0.00 35.59 3.41
337 384 1.467734 CATCACTGCTTGAAGGCTGAC 59.532 52.381 0.00 0.00 37.92 3.51
338 385 1.817357 CATCACTGCTTGAAGGCTGA 58.183 50.000 0.00 0.00 37.92 4.26
339 386 0.170561 GCATCACTGCTTGAAGGCTG 59.829 55.000 0.00 0.00 45.32 4.85
340 387 2.564471 GCATCACTGCTTGAAGGCT 58.436 52.632 0.00 0.00 45.32 4.58
358 405 9.277565 CTATGAACGAACATTAACATTGAAAGG 57.722 33.333 0.00 0.00 0.00 3.11
393 440 4.398358 GGGAGTAGTAATCAAAAGCCAACC 59.602 45.833 0.00 0.00 0.00 3.77
394 441 5.254115 AGGGAGTAGTAATCAAAAGCCAAC 58.746 41.667 0.00 0.00 0.00 3.77
395 442 5.497474 GAGGGAGTAGTAATCAAAAGCCAA 58.503 41.667 0.00 0.00 0.00 4.52
396 443 4.080526 GGAGGGAGTAGTAATCAAAAGCCA 60.081 45.833 0.00 0.00 0.00 4.75
397 444 4.452825 GGAGGGAGTAGTAATCAAAAGCC 58.547 47.826 0.00 0.00 0.00 4.35
398 445 4.120589 CGGAGGGAGTAGTAATCAAAAGC 58.879 47.826 0.00 0.00 0.00 3.51
399 446 5.340439 ACGGAGGGAGTAGTAATCAAAAG 57.660 43.478 0.00 0.00 0.00 2.27
400 447 5.337813 GGAACGGAGGGAGTAGTAATCAAAA 60.338 44.000 0.00 0.00 0.00 2.44
401 448 4.161001 GGAACGGAGGGAGTAGTAATCAAA 59.839 45.833 0.00 0.00 0.00 2.69
402 449 3.703052 GGAACGGAGGGAGTAGTAATCAA 59.297 47.826 0.00 0.00 0.00 2.57
403 450 3.294214 GGAACGGAGGGAGTAGTAATCA 58.706 50.000 0.00 0.00 0.00 2.57
404 451 3.294214 TGGAACGGAGGGAGTAGTAATC 58.706 50.000 0.00 0.00 0.00 1.75
405 452 3.393426 TGGAACGGAGGGAGTAGTAAT 57.607 47.619 0.00 0.00 0.00 1.89
406 453 2.905415 TGGAACGGAGGGAGTAGTAA 57.095 50.000 0.00 0.00 0.00 2.24
407 454 2.905415 TTGGAACGGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
408 455 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
409 456 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
410 457 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
411 458 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
412 459 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
413 460 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
414 461 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
415 462 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
416 463 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
417 464 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
418 465 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
419 466 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
420 467 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
421 468 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
422 469 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
423 470 4.215965 CAAAACCACGACGAGTAATTTGG 58.784 43.478 0.00 0.00 31.18 3.28
424 471 4.024725 TCCAAAACCACGACGAGTAATTTG 60.025 41.667 0.00 7.28 32.92 2.32
425 472 4.128643 TCCAAAACCACGACGAGTAATTT 58.871 39.130 0.00 0.00 0.00 1.82
426 473 3.731089 TCCAAAACCACGACGAGTAATT 58.269 40.909 0.00 0.00 0.00 1.40
427 474 3.389925 TCCAAAACCACGACGAGTAAT 57.610 42.857 0.00 0.00 0.00 1.89
428 475 2.865551 GTTCCAAAACCACGACGAGTAA 59.134 45.455 0.00 0.00 0.00 2.24
429 476 2.472816 GTTCCAAAACCACGACGAGTA 58.527 47.619 0.00 0.00 0.00 2.59
430 477 1.292992 GTTCCAAAACCACGACGAGT 58.707 50.000 0.00 0.00 0.00 4.18
431 478 0.231279 CGTTCCAAAACCACGACGAG 59.769 55.000 0.00 0.00 35.93 4.18
432 479 1.152989 CCGTTCCAAAACCACGACGA 61.153 55.000 0.00 0.00 35.93 4.20
433 480 1.152989 TCCGTTCCAAAACCACGACG 61.153 55.000 0.00 0.00 35.93 5.12
434 481 0.584876 CTCCGTTCCAAAACCACGAC 59.415 55.000 0.00 0.00 35.93 4.34
435 482 0.533308 CCTCCGTTCCAAAACCACGA 60.533 55.000 0.00 0.00 35.93 4.35
436 483 1.512156 CCCTCCGTTCCAAAACCACG 61.512 60.000 0.00 0.00 31.27 4.94
437 484 0.179012 TCCCTCCGTTCCAAAACCAC 60.179 55.000 0.00 0.00 31.27 4.16
438 485 0.109723 CTCCCTCCGTTCCAAAACCA 59.890 55.000 0.00 0.00 31.27 3.67
439 486 0.109913 ACTCCCTCCGTTCCAAAACC 59.890 55.000 0.00 0.00 31.27 3.27
440 487 2.845363 TACTCCCTCCGTTCCAAAAC 57.155 50.000 0.00 0.00 0.00 2.43
441 488 3.618019 CGAATACTCCCTCCGTTCCAAAA 60.618 47.826 0.00 0.00 0.00 2.44
442 489 2.093869 CGAATACTCCCTCCGTTCCAAA 60.094 50.000 0.00 0.00 0.00 3.28
443 490 1.479323 CGAATACTCCCTCCGTTCCAA 59.521 52.381 0.00 0.00 0.00 3.53
444 491 1.108776 CGAATACTCCCTCCGTTCCA 58.891 55.000 0.00 0.00 0.00 3.53
445 492 0.388294 CCGAATACTCCCTCCGTTCC 59.612 60.000 0.00 0.00 0.00 3.62
446 493 0.249363 GCCGAATACTCCCTCCGTTC 60.249 60.000 0.00 0.00 0.00 3.95
447 494 0.686769 AGCCGAATACTCCCTCCGTT 60.687 55.000 0.00 0.00 0.00 4.44
448 495 0.184451 TAGCCGAATACTCCCTCCGT 59.816 55.000 0.00 0.00 0.00 4.69
449 496 1.546961 ATAGCCGAATACTCCCTCCG 58.453 55.000 0.00 0.00 0.00 4.63
450 497 3.830755 TGTAATAGCCGAATACTCCCTCC 59.169 47.826 0.00 0.00 0.00 4.30
451 498 4.523558 ACTGTAATAGCCGAATACTCCCTC 59.476 45.833 0.00 0.00 0.00 4.30
452 499 4.481072 ACTGTAATAGCCGAATACTCCCT 58.519 43.478 0.00 0.00 0.00 4.20
453 500 4.868314 ACTGTAATAGCCGAATACTCCC 57.132 45.455 0.00 0.00 0.00 4.30
454 501 6.278363 TGAAACTGTAATAGCCGAATACTCC 58.722 40.000 0.00 0.00 0.00 3.85
455 502 6.074249 GCTGAAACTGTAATAGCCGAATACTC 60.074 42.308 0.00 0.00 0.00 2.59
456 503 5.753921 GCTGAAACTGTAATAGCCGAATACT 59.246 40.000 0.00 0.00 0.00 2.12
457 504 5.522460 TGCTGAAACTGTAATAGCCGAATAC 59.478 40.000 7.36 0.00 33.60 1.89
458 505 5.666462 TGCTGAAACTGTAATAGCCGAATA 58.334 37.500 7.36 0.00 33.60 1.75
459 506 4.513442 TGCTGAAACTGTAATAGCCGAAT 58.487 39.130 7.36 0.00 33.60 3.34
460 507 3.932822 TGCTGAAACTGTAATAGCCGAA 58.067 40.909 7.36 0.00 33.60 4.30
461 508 3.603158 TGCTGAAACTGTAATAGCCGA 57.397 42.857 7.36 0.00 33.60 5.54
462 509 4.122776 AGATGCTGAAACTGTAATAGCCG 58.877 43.478 7.36 0.00 33.60 5.52
482 529 5.223449 ACGAAATAGTTGGGTTTCTGAGA 57.777 39.130 0.00 0.00 33.32 3.27
483 530 5.701290 AGAACGAAATAGTTGGGTTTCTGAG 59.299 40.000 0.00 0.00 34.00 3.35
812 879 2.821378 TGCTGATGATGGAACCAAAGTG 59.179 45.455 0.00 0.00 0.00 3.16
851 921 1.505425 CTTTCTGCTTTGCTTTGCCC 58.495 50.000 0.00 0.00 0.00 5.36
903 978 2.218037 TTTGGTTGCTGTGTGCGCAA 62.218 50.000 14.00 0.00 46.63 4.85
904 979 2.610700 CTTTGGTTGCTGTGTGCGCA 62.611 55.000 5.66 5.66 46.63 6.09
905 980 1.945662 CTTTGGTTGCTGTGTGCGC 60.946 57.895 0.00 0.00 46.63 6.09
906 981 1.299316 CCTTTGGTTGCTGTGTGCG 60.299 57.895 0.00 0.00 46.63 5.34
907 982 1.592400 GCCTTTGGTTGCTGTGTGC 60.592 57.895 0.00 0.00 43.25 4.57
918 993 3.297134 TTAGATTAGGCAGGCCTTTGG 57.703 47.619 19.37 0.00 45.70 3.28
937 1012 5.946377 GTGAATTCTCTGTGGGGTTAGAATT 59.054 40.000 7.05 8.47 46.24 2.17
1020 1095 3.316573 GAGGACCTGCTTCCCCACG 62.317 68.421 0.00 0.00 36.12 4.94
1107 1206 0.179029 CCCCCAACTTCAACACGTCT 60.179 55.000 0.00 0.00 0.00 4.18
1302 1401 4.008330 GGAAAAGTAGAGTTACCTTGGGC 58.992 47.826 0.00 0.00 0.00 5.36
1325 1424 0.680280 CGACGAGGAGAGGGGAAGAA 60.680 60.000 0.00 0.00 0.00 2.52
1463 1568 3.333313 AGAGGGATTGAGATCTCAGCT 57.667 47.619 23.92 16.08 41.13 4.24
1483 1588 3.899981 CTTGCTGGCCACCGCTGTA 62.900 63.158 17.08 0.00 34.44 2.74
1550 1776 1.374758 CTCACCGCTGGAGACCAAC 60.375 63.158 1.50 0.00 34.24 3.77
1699 1926 7.566760 AAACGCAGAATGGATATATTCACAA 57.433 32.000 0.00 0.00 39.08 3.33
1778 2167 5.698741 TTTTAGGATTCTCATCTGCCTCA 57.301 39.130 0.00 0.00 0.00 3.86
2331 2729 9.880064 CTTTGCTCAGATTATCATACAGAAATG 57.120 33.333 0.00 0.00 0.00 2.32
3125 3528 8.892723 CATACCAGAGTACAATTTATGAAAGCA 58.107 33.333 0.00 0.00 0.00 3.91
3154 3557 8.068892 AGTCAAAGTGTAGGGACTAATCTAAG 57.931 38.462 0.00 0.00 45.48 2.18
3303 3708 9.862149 AAAGGACAAGGAAGAATCTAAAACTAA 57.138 29.630 0.00 0.00 0.00 2.24
3440 3954 4.644234 CCATGCACATAATTTGGTGGACTA 59.356 41.667 10.15 0.00 38.18 2.59
3680 4208 5.235516 TGAACTTTTAAGTCGATCCAGGTC 58.764 41.667 0.00 0.00 38.57 3.85
3693 4221 9.733556 TTCTATAACCAGCTCATGAACTTTTAA 57.266 29.630 0.00 0.00 0.00 1.52
3793 4323 4.815973 TAGCGGAGGGCCATGGGT 62.816 66.667 15.13 0.00 45.17 4.51
3808 4338 5.044558 GCGACCCAAAAGATTCTAGACTAG 58.955 45.833 2.81 2.81 0.00 2.57
3831 4361 2.049627 GATGTGGGCTGCCTAGAGGG 62.050 65.000 19.68 0.00 35.18 4.30
3879 4409 9.887406 GAACGTATTCTACCTTTCATTTCAAAA 57.113 29.630 0.00 0.00 31.55 2.44
3881 4411 8.842358 AGAACGTATTCTACCTTTCATTTCAA 57.158 30.769 0.00 0.00 43.70 2.69
3904 4434 9.569122 GGCCTGTTTTGAAATATATAAGGTAGA 57.431 33.333 0.00 0.00 0.00 2.59
3905 4435 8.504005 CGGCCTGTTTTGAAATATATAAGGTAG 58.496 37.037 0.00 0.00 0.00 3.18
3906 4436 7.994334 ACGGCCTGTTTTGAAATATATAAGGTA 59.006 33.333 0.00 0.00 0.00 3.08
3907 4437 6.831868 ACGGCCTGTTTTGAAATATATAAGGT 59.168 34.615 0.00 0.00 0.00 3.50
3908 4438 7.272037 ACGGCCTGTTTTGAAATATATAAGG 57.728 36.000 0.00 0.00 0.00 2.69
3909 4439 8.015658 GCTACGGCCTGTTTTGAAATATATAAG 58.984 37.037 0.00 0.00 0.00 1.73
3910 4440 7.867752 GCTACGGCCTGTTTTGAAATATATAA 58.132 34.615 0.00 0.00 0.00 0.98
3911 4441 7.429636 GCTACGGCCTGTTTTGAAATATATA 57.570 36.000 0.00 0.00 0.00 0.86
3912 4442 6.313744 GCTACGGCCTGTTTTGAAATATAT 57.686 37.500 0.00 0.00 0.00 0.86
3913 4443 5.744666 GCTACGGCCTGTTTTGAAATATA 57.255 39.130 0.00 0.00 0.00 0.86
3914 4444 4.632538 GCTACGGCCTGTTTTGAAATAT 57.367 40.909 0.00 0.00 0.00 1.28
3938 4468 0.106894 GGTCCATGGAATCGGTCTCC 59.893 60.000 18.20 7.04 0.00 3.71
3939 4469 0.830648 TGGTCCATGGAATCGGTCTC 59.169 55.000 18.20 0.45 0.00 3.36
3940 4470 1.141657 CATGGTCCATGGAATCGGTCT 59.858 52.381 22.45 0.00 38.11 3.85
3941 4471 1.140852 TCATGGTCCATGGAATCGGTC 59.859 52.381 28.01 2.13 41.66 4.79
3942 4472 1.134098 GTCATGGTCCATGGAATCGGT 60.134 52.381 28.01 2.37 41.66 4.69
3943 4473 1.141657 AGTCATGGTCCATGGAATCGG 59.858 52.381 28.01 7.21 41.66 4.18
3944 4474 2.627515 AGTCATGGTCCATGGAATCG 57.372 50.000 28.01 5.68 41.66 3.34
3945 4475 4.141620 ACTGTAGTCATGGTCCATGGAATC 60.142 45.833 28.01 12.61 41.66 2.52
3946 4476 3.782523 ACTGTAGTCATGGTCCATGGAAT 59.217 43.478 28.01 17.30 41.66 3.01
3947 4477 3.055167 CACTGTAGTCATGGTCCATGGAA 60.055 47.826 28.01 10.30 41.66 3.53
3948 4478 2.501316 CACTGTAGTCATGGTCCATGGA 59.499 50.000 28.01 11.44 41.66 3.41
3949 4479 2.501316 TCACTGTAGTCATGGTCCATGG 59.499 50.000 28.01 15.15 41.66 3.66
3950 4480 3.893326 TCACTGTAGTCATGGTCCATG 57.107 47.619 23.92 23.92 42.60 3.66
3951 4481 4.293494 AGATCACTGTAGTCATGGTCCAT 58.707 43.478 0.00 0.00 0.00 3.41
3952 4482 3.713003 AGATCACTGTAGTCATGGTCCA 58.287 45.455 0.00 0.00 0.00 4.02
3953 4483 4.437239 CAAGATCACTGTAGTCATGGTCC 58.563 47.826 0.00 0.00 0.00 4.46
3954 4484 4.437239 CCAAGATCACTGTAGTCATGGTC 58.563 47.826 0.00 0.00 0.00 4.02
3955 4485 3.198635 CCCAAGATCACTGTAGTCATGGT 59.801 47.826 12.08 0.00 0.00 3.55
3956 4486 3.452264 TCCCAAGATCACTGTAGTCATGG 59.548 47.826 0.00 8.19 0.00 3.66
4015 4545 2.435069 TGGTCGGGTTTCTCACTGTTAA 59.565 45.455 0.00 0.00 0.00 2.01
4089 4620 1.588597 GAGGAAAAGCTTGCCCTGC 59.411 57.895 20.75 10.97 0.00 4.85
4154 4685 3.252215 CCACCGACATACAATGTTGTTGT 59.748 43.478 3.45 8.19 45.03 3.32
4168 4699 4.164087 ACCACGCAACCACCGACA 62.164 61.111 0.00 0.00 0.00 4.35
4170 4701 3.851128 TGACCACGCAACCACCGA 61.851 61.111 0.00 0.00 0.00 4.69
4238 4770 0.462937 TTGGTCACAACACCTCCGTG 60.463 55.000 0.00 0.00 46.11 4.94
4240 4772 0.874390 CATTGGTCACAACACCTCCG 59.126 55.000 0.00 0.00 39.87 4.63
4433 5025 3.718956 CACCCTCTCTCTTCCCCATATTT 59.281 47.826 0.00 0.00 0.00 1.40
4495 5095 2.503382 CCCTCTCCCGAAGCCTAGC 61.503 68.421 0.00 0.00 0.00 3.42
4673 5273 0.179032 TACCATATGCACTTGGCCCG 60.179 55.000 15.05 0.00 43.89 6.13
4831 5431 8.800370 AAAAATTGTACCACTGGAAACATTTT 57.200 26.923 0.71 10.90 41.51 1.82
4942 5542 0.107459 GACAGAGTGGAATGCTCCCC 60.107 60.000 0.00 0.00 41.64 4.81
5102 5702 4.802051 CATCGGTGGTGGCCCCTG 62.802 72.222 0.00 0.00 0.00 4.45
5106 5706 2.886730 CTAACCCATCGGTGGTGGCC 62.887 65.000 15.03 0.00 43.71 5.36
5107 5707 1.451387 CTAACCCATCGGTGGTGGC 60.451 63.158 15.03 0.00 43.71 5.01
5109 5709 1.813753 CGCTAACCCATCGGTGGTG 60.814 63.158 15.03 7.83 43.71 4.17
5110 5710 1.546589 TTCGCTAACCCATCGGTGGT 61.547 55.000 15.03 0.00 43.71 4.16
5112 5712 1.663695 ATTTCGCTAACCCATCGGTG 58.336 50.000 0.00 0.00 43.71 4.94
5115 5715 4.552166 ATGAAATTTCGCTAACCCATCG 57.448 40.909 13.34 0.00 0.00 3.84
5251 8463 2.096565 GGAGAAACGTAAAACAGCGACC 60.097 50.000 0.00 0.00 0.00 4.79
5321 8564 5.305128 TCTGGAGGAGTTTTGAAATGCAATT 59.695 36.000 0.00 0.00 38.98 2.32
5391 8634 5.847304 TCGAGATTAATGAGGTCATCAAGG 58.153 41.667 0.00 0.00 42.53 3.61
5401 8644 7.482654 TTTTGGTAGCATCGAGATTAATGAG 57.517 36.000 0.00 0.00 0.00 2.90
5668 8911 4.965119 ACCGAATTAGCTTCAATTGACC 57.035 40.909 7.89 2.30 33.10 4.02
5896 9139 5.186198 ACACCCGGATAGATTGAGAAAAAG 58.814 41.667 0.73 0.00 0.00 2.27
6087 9330 6.260271 GCTCTAAACACGGAAGGCTTATATTT 59.740 38.462 0.00 0.00 0.00 1.40
6172 9415 6.052360 AGAGGTTCAAGAACTCAAGTTTCTC 58.948 40.000 12.22 7.83 40.94 2.87
6302 9545 1.860676 CTCGACGAGGTCACCAAAAA 58.139 50.000 17.27 0.00 32.09 1.94
6780 10023 6.035650 GGTTTTTCCAGACAAGTTTAAGCAAC 59.964 38.462 0.00 0.00 35.97 4.17
6990 10233 5.466393 ACACAACATTCTTAAATTTGGCAGC 59.534 36.000 0.00 0.00 0.00 5.25
7062 10305 0.824109 TCATACAAGGTCTGCCCTCG 59.176 55.000 0.00 0.00 45.47 4.63
7230 10473 4.946160 ACCCCAATTCATACTTCTTGGA 57.054 40.909 1.83 0.00 40.48 3.53
7343 10587 2.634940 TCCCACCTGTCTTGAGAGAAAG 59.365 50.000 0.00 0.00 37.05 2.62
7470 10714 1.944024 TCATTCAACGACACCAACCAC 59.056 47.619 0.00 0.00 0.00 4.16
7694 10938 0.325933 TGTCAGGCTGGGACAATCTG 59.674 55.000 15.73 0.00 41.96 2.90
7820 11064 2.472695 TTCGACTTTGGGGATGTGAG 57.527 50.000 0.00 0.00 0.00 3.51
7960 11204 4.722535 AGGAAGCCGGGCAGAGGA 62.723 66.667 23.09 0.00 0.00 3.71
8017 11292 0.741915 GAACACCGGGAGCAAAAACA 59.258 50.000 6.32 0.00 0.00 2.83
8018 11293 1.029681 AGAACACCGGGAGCAAAAAC 58.970 50.000 6.32 0.00 0.00 2.43
8108 11465 1.071699 TGCCCTTGAACTGTACAGACC 59.928 52.381 29.30 18.68 0.00 3.85
8109 11466 2.037251 TCTGCCCTTGAACTGTACAGAC 59.963 50.000 29.30 20.58 0.00 3.51
8184 11545 9.586435 AAGTTCAATTTCTAAAAGTTGACAAGG 57.414 29.630 0.00 0.00 39.82 3.61
8271 11684 9.585099 GGATGTTATAGCACAATGAAAATTGAA 57.415 29.630 5.49 0.00 35.60 2.69
8325 11738 0.457035 AAGCCTGCACGCATAATTGG 59.543 50.000 10.37 0.00 0.00 3.16
8366 11779 2.803956 CTGCCTCATTTTTGCAAGGTTG 59.196 45.455 0.00 0.00 34.06 3.77
8428 11846 1.118965 TCCCAGCGAGAACTTGGTCA 61.119 55.000 0.00 0.00 0.00 4.02
8461 11879 3.300388 AGAGCTCCTCCGTCATCAAATA 58.700 45.455 10.93 0.00 0.00 1.40
8484 11924 6.102897 ACAACATTAGTCAGTCAGCTACTT 57.897 37.500 0.00 0.00 35.76 2.24
8507 11947 6.710295 TCACAACGGTAACAGTAGAAGTAGTA 59.290 38.462 0.00 0.00 0.00 1.82
8508 11948 5.532406 TCACAACGGTAACAGTAGAAGTAGT 59.468 40.000 0.00 0.00 0.00 2.73
8509 11949 6.005583 TCACAACGGTAACAGTAGAAGTAG 57.994 41.667 0.00 0.00 0.00 2.57
8514 11954 4.924305 AACTCACAACGGTAACAGTAGA 57.076 40.909 0.00 0.00 0.00 2.59
8703 12146 6.014755 CCAAGATGTATGCTATCTGGAGAGAA 60.015 42.308 0.00 0.00 35.20 2.87
8744 12187 0.901580 ACACACCCGGTACCTAGTGG 60.902 60.000 26.05 19.33 39.83 4.00
8757 12200 3.056607 AGCATGGCAAAAATAGACACACC 60.057 43.478 0.00 0.00 0.00 4.16
8819 12348 9.888878 CATCGAGAACCTTATAAACGACTATAA 57.111 33.333 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.