Multiple sequence alignment - TraesCS5B01G566800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G566800 chr5B 100.000 2549 0 0 1 2549 710874858 710872310 0.000000e+00 4708
1 TraesCS5B01G566800 chr5B 80.680 1646 305 13 128 1767 88023805 88022167 0.000000e+00 1266
2 TraesCS5B01G566800 chr5B 87.387 111 11 2 2126 2233 710936051 710935941 9.580000e-25 124
3 TraesCS5B01G566800 chr5B 85.593 118 15 1 2118 2233 710935385 710935268 3.440000e-24 122
4 TraesCS5B01G566800 chr1D 84.182 2004 281 25 1 1981 225005562 225003572 0.000000e+00 1912
5 TraesCS5B01G566800 chr7D 84.526 1370 190 16 626 1984 192363444 192362086 0.000000e+00 1336
6 TraesCS5B01G566800 chr3A 86.210 1153 155 4 1 1152 71206843 71207992 0.000000e+00 1245
7 TraesCS5B01G566800 chr3A 84.352 818 103 14 1179 1981 71207985 71208792 0.000000e+00 778
8 TraesCS5B01G566800 chr3A 73.986 592 134 14 1150 1733 423978855 423978276 3.300000e-54 222
9 TraesCS5B01G566800 chr7A 74.240 1611 369 39 148 1735 42860199 42858612 3.580000e-178 634
10 TraesCS5B01G566800 chr7A 73.422 982 235 23 251 1220 286154962 286153995 6.750000e-91 344
11 TraesCS5B01G566800 chr5D 73.553 1520 358 41 1 1499 529759502 529760998 8.020000e-150 540
12 TraesCS5B01G566800 chr4D 73.833 1414 343 27 22 1422 12489634 12491033 1.040000e-148 536
13 TraesCS5B01G566800 chr1B 73.844 1449 330 40 22 1444 19829794 19831219 4.830000e-147 531
14 TraesCS5B01G566800 chr1B 73.633 1445 336 37 22 1444 19678042 19679463 1.350000e-142 516
15 TraesCS5B01G566800 chr1B 73.461 1462 351 35 1 1444 651708244 651709686 1.350000e-142 516
16 TraesCS5B01G566800 chr3B 74.765 1169 278 16 22 1182 32035917 32037076 2.260000e-140 508
17 TraesCS5B01G566800 chr3B 73.505 1438 338 39 4 1422 72234921 72233508 2.930000e-139 505
18 TraesCS5B01G566800 chr3B 76.289 291 64 4 1117 1405 344248910 344249197 1.580000e-32 150
19 TraesCS5B01G566800 chr2D 72.988 1429 359 23 1 1422 73355638 73357046 2.290000e-130 475
20 TraesCS5B01G566800 chr2D 73.718 624 132 28 1131 1735 576405540 576406150 5.520000e-52 215
21 TraesCS5B01G566800 chr7B 75.072 1039 240 13 701 1733 516854537 516855562 1.380000e-127 466
22 TraesCS5B01G566800 chr6A 79.394 660 119 16 1104 1754 404356192 404356843 1.390000e-122 449
23 TraesCS5B01G566800 chr6D 77.822 762 138 18 1009 1762 283803352 283804090 2.330000e-120 442


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G566800 chr5B 710872310 710874858 2548 True 4708.0 4708 100.000 1 2549 1 chr5B.!!$R2 2548
1 TraesCS5B01G566800 chr5B 88022167 88023805 1638 True 1266.0 1266 80.680 128 1767 1 chr5B.!!$R1 1639
2 TraesCS5B01G566800 chr1D 225003572 225005562 1990 True 1912.0 1912 84.182 1 1981 1 chr1D.!!$R1 1980
3 TraesCS5B01G566800 chr7D 192362086 192363444 1358 True 1336.0 1336 84.526 626 1984 1 chr7D.!!$R1 1358
4 TraesCS5B01G566800 chr3A 71206843 71208792 1949 False 1011.5 1245 85.281 1 1981 2 chr3A.!!$F1 1980
5 TraesCS5B01G566800 chr3A 423978276 423978855 579 True 222.0 222 73.986 1150 1733 1 chr3A.!!$R1 583
6 TraesCS5B01G566800 chr7A 42858612 42860199 1587 True 634.0 634 74.240 148 1735 1 chr7A.!!$R1 1587
7 TraesCS5B01G566800 chr7A 286153995 286154962 967 True 344.0 344 73.422 251 1220 1 chr7A.!!$R2 969
8 TraesCS5B01G566800 chr5D 529759502 529760998 1496 False 540.0 540 73.553 1 1499 1 chr5D.!!$F1 1498
9 TraesCS5B01G566800 chr4D 12489634 12491033 1399 False 536.0 536 73.833 22 1422 1 chr4D.!!$F1 1400
10 TraesCS5B01G566800 chr1B 19829794 19831219 1425 False 531.0 531 73.844 22 1444 1 chr1B.!!$F2 1422
11 TraesCS5B01G566800 chr1B 19678042 19679463 1421 False 516.0 516 73.633 22 1444 1 chr1B.!!$F1 1422
12 TraesCS5B01G566800 chr1B 651708244 651709686 1442 False 516.0 516 73.461 1 1444 1 chr1B.!!$F3 1443
13 TraesCS5B01G566800 chr3B 32035917 32037076 1159 False 508.0 508 74.765 22 1182 1 chr3B.!!$F1 1160
14 TraesCS5B01G566800 chr3B 72233508 72234921 1413 True 505.0 505 73.505 4 1422 1 chr3B.!!$R1 1418
15 TraesCS5B01G566800 chr2D 73355638 73357046 1408 False 475.0 475 72.988 1 1422 1 chr2D.!!$F1 1421
16 TraesCS5B01G566800 chr2D 576405540 576406150 610 False 215.0 215 73.718 1131 1735 1 chr2D.!!$F2 604
17 TraesCS5B01G566800 chr7B 516854537 516855562 1025 False 466.0 466 75.072 701 1733 1 chr7B.!!$F1 1032
18 TraesCS5B01G566800 chr6A 404356192 404356843 651 False 449.0 449 79.394 1104 1754 1 chr6A.!!$F1 650
19 TraesCS5B01G566800 chr6D 283803352 283804090 738 False 442.0 442 77.822 1009 1762 1 chr6D.!!$F1 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 721 2.228841 GATGGAAGGTGGGCATGGGT 62.229 60.0 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2204 0.029834 GTACGAAGCTAATCGGCCGA 59.97 55.0 33.12 33.12 46.82 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.388552 TGAGCAGGTCTCTAGGATGAA 57.611 47.619 0.38 0.00 42.38 2.57
87 88 7.870445 GGATGAAGATCAACTATGGTAAGAGTC 59.130 40.741 0.00 0.00 0.00 3.36
95 96 7.323420 TCAACTATGGTAAGAGTCAACTCATG 58.677 38.462 12.43 0.00 45.21 3.07
122 123 8.997323 CCCATTAACATAGATGATGAGAGTTTC 58.003 37.037 0.00 0.00 39.06 2.78
213 215 7.298374 TCTCCACTATGATAAGCTAAGAAGGA 58.702 38.462 0.00 0.00 0.00 3.36
275 277 2.647299 TGCTGGTTGGAGAGGGAAATTA 59.353 45.455 0.00 0.00 0.00 1.40
305 307 4.362677 ACAAAGGAAGGCTAGTCCTCATA 58.637 43.478 8.18 0.00 46.94 2.15
306 308 4.971924 ACAAAGGAAGGCTAGTCCTCATAT 59.028 41.667 8.18 0.00 46.94 1.78
307 309 5.163258 ACAAAGGAAGGCTAGTCCTCATATG 60.163 44.000 8.18 8.02 46.94 1.78
308 310 3.515562 AGGAAGGCTAGTCCTCATATGG 58.484 50.000 1.73 0.00 46.94 2.74
314 316 2.304180 GCTAGTCCTCATATGGGCATGT 59.696 50.000 2.13 0.00 33.35 3.21
360 362 7.430441 TCTACTTTCCTTTTTCAAATTTCCCG 58.570 34.615 0.00 0.00 0.00 5.14
566 570 3.641906 ACTATGAGGGAGATGGTAAACCG 59.358 47.826 0.00 0.00 39.43 4.44
716 721 2.228841 GATGGAAGGTGGGCATGGGT 62.229 60.000 0.00 0.00 0.00 4.51
832 837 4.290942 AGGAGTATTAGAGAAGTGTGGGG 58.709 47.826 0.00 0.00 0.00 4.96
920 925 6.009589 TCAGATTGTGGAAATTGCTAAAGGA 58.990 36.000 0.00 0.00 0.00 3.36
945 950 2.638480 CTTTGACAAGGACCCAGACA 57.362 50.000 0.00 0.00 0.00 3.41
997 1002 8.623030 GGGTGTCTACTCTACTAGTTATCTTTG 58.377 40.741 0.00 0.00 39.80 2.77
1024 1031 7.782644 CCATGTTATTAATTTTAGGAGGGGTGA 59.217 37.037 0.00 0.00 0.00 4.02
1056 1063 7.691213 TGTTTATCCCTATTGTGTGGAAACTA 58.309 34.615 0.00 0.00 0.00 2.24
1096 1107 3.375922 TCACGTCTTCCTTTGGTTGTTTC 59.624 43.478 0.00 0.00 0.00 2.78
1111 1122 5.654650 TGGTTGTTTCCTCATAACAAGTTGT 59.345 36.000 1.64 1.64 43.78 3.32
1116 1127 6.375736 TGTTTCCTCATAACAAGTTGTTGACA 59.624 34.615 27.65 11.35 41.30 3.58
1193 1204 2.417933 CTGAGAATGAAACCAGCTTCCG 59.582 50.000 0.00 0.00 0.00 4.30
1266 1278 9.183368 GAAGATTTCTTCCAAATTCAGATAGGT 57.817 33.333 8.81 0.00 44.93 3.08
1304 1316 1.067142 TGCACGCTTCTGGGTTACTAG 60.067 52.381 0.00 0.00 37.24 2.57
1444 1464 6.618811 AGCTTGTTGATTAGAATGCTCAAAG 58.381 36.000 0.00 0.00 31.21 2.77
1447 1467 6.500684 TGTTGATTAGAATGCTCAAAGTCC 57.499 37.500 0.00 0.00 31.21 3.85
1516 1536 5.437060 TCCTGAGCTCACTAACAAGTTTTT 58.563 37.500 13.74 0.00 0.00 1.94
1562 1594 2.941720 GTGGCTGATGATGGAGAAAGAC 59.058 50.000 0.00 0.00 0.00 3.01
1641 1675 0.777446 CCTCCAAGAAAAGGGACCCA 59.223 55.000 14.60 0.00 0.00 4.51
1661 1695 3.249799 CCATCGAACAAAAGCACTGTGTA 59.750 43.478 9.86 0.00 0.00 2.90
1767 1801 0.886043 GCCATGGCGTGATGATGCTA 60.886 55.000 23.48 0.00 34.20 3.49
1773 1807 2.224257 TGGCGTGATGATGCTAGCAATA 60.224 45.455 23.54 14.09 34.20 1.90
1776 1810 4.813161 GGCGTGATGATGCTAGCAATATAT 59.187 41.667 23.54 13.21 34.20 0.86
1780 1814 6.755607 CGTGATGATGCTAGCAATATATGACT 59.244 38.462 23.54 0.53 0.00 3.41
1781 1815 7.254017 CGTGATGATGCTAGCAATATATGACTG 60.254 40.741 23.54 10.01 0.00 3.51
1782 1816 6.537660 TGATGATGCTAGCAATATATGACTGC 59.462 38.462 23.54 5.97 36.29 4.40
1784 1818 7.174107 TGATGCTAGCAATATATGACTGCTA 57.826 36.000 23.54 14.14 44.44 3.49
1785 1819 7.789026 TGATGCTAGCAATATATGACTGCTAT 58.211 34.615 23.54 0.00 45.14 2.97
1786 1820 7.709613 TGATGCTAGCAATATATGACTGCTATG 59.290 37.037 23.54 11.28 45.14 2.23
1787 1821 6.939622 TGCTAGCAATATATGACTGCTATGT 58.060 36.000 16.84 0.00 45.14 2.29
1788 1822 6.815142 TGCTAGCAATATATGACTGCTATGTG 59.185 38.462 16.84 7.68 45.14 3.21
1789 1823 6.257411 GCTAGCAATATATGACTGCTATGTGG 59.743 42.308 10.63 7.42 45.14 4.17
1790 1824 5.494724 AGCAATATATGACTGCTATGTGGG 58.505 41.667 8.35 0.00 44.44 4.61
1791 1825 5.249163 AGCAATATATGACTGCTATGTGGGA 59.751 40.000 8.35 0.00 44.44 4.37
1797 1831 0.107017 ACTGCTATGTGGGATGTGGC 60.107 55.000 0.00 0.00 0.00 5.01
1798 1832 0.182061 CTGCTATGTGGGATGTGGCT 59.818 55.000 0.00 0.00 0.00 4.75
1800 1834 1.312815 GCTATGTGGGATGTGGCTTC 58.687 55.000 0.00 0.00 0.00 3.86
1804 1840 1.909700 TGTGGGATGTGGCTTCTTTC 58.090 50.000 0.00 0.00 0.00 2.62
1807 1843 2.893489 GTGGGATGTGGCTTCTTTCTTT 59.107 45.455 0.00 0.00 0.00 2.52
1808 1844 3.057245 GTGGGATGTGGCTTCTTTCTTTC 60.057 47.826 0.00 0.00 0.00 2.62
1813 1849 3.290710 TGTGGCTTCTTTCTTTCTGCTT 58.709 40.909 0.00 0.00 0.00 3.91
1817 1853 4.217118 TGGCTTCTTTCTTTCTGCTTGATC 59.783 41.667 0.00 0.00 0.00 2.92
1822 1858 5.423015 TCTTTCTTTCTGCTTGATCGCTAT 58.577 37.500 0.00 0.00 0.00 2.97
1823 1859 6.573434 TCTTTCTTTCTGCTTGATCGCTATA 58.427 36.000 0.00 0.00 0.00 1.31
1834 1870 7.606349 TGCTTGATCGCTATAACAATATCTCT 58.394 34.615 0.00 0.00 0.00 3.10
1835 1871 8.739972 TGCTTGATCGCTATAACAATATCTCTA 58.260 33.333 0.00 0.00 0.00 2.43
1836 1872 9.574458 GCTTGATCGCTATAACAATATCTCTAA 57.426 33.333 0.00 0.00 0.00 2.10
1849 1905 6.313905 ACAATATCTCTAAGTTCGTTTGCTGG 59.686 38.462 0.00 0.00 0.00 4.85
1878 1934 1.657181 GCTGTTGTGGCGGTTTTCG 60.657 57.895 0.00 0.00 42.76 3.46
1879 1935 1.725066 CTGTTGTGGCGGTTTTCGT 59.275 52.632 0.00 0.00 41.72 3.85
1948 2014 7.755373 TGTAAGAGACTACTGTGATTTCATTCG 59.245 37.037 0.00 0.00 0.00 3.34
1964 2030 3.639561 TCATTCGAGTAATGGAATCGGGA 59.360 43.478 0.00 0.00 44.42 5.14
1969 2035 3.318275 CGAGTAATGGAATCGGGAAGAGA 59.682 47.826 0.00 0.00 32.93 3.10
1970 2036 4.021894 CGAGTAATGGAATCGGGAAGAGAT 60.022 45.833 0.00 0.00 32.93 2.75
1983 2049 2.628290 GGAAGAGATCTCCCTGTTCCCT 60.628 54.545 22.38 0.83 45.62 4.20
1984 2050 2.173126 AGAGATCTCCCTGTTCCCTG 57.827 55.000 19.30 0.00 0.00 4.45
1985 2051 1.364328 AGAGATCTCCCTGTTCCCTGT 59.636 52.381 19.30 0.00 0.00 4.00
1986 2052 2.192263 GAGATCTCCCTGTTCCCTGTT 58.808 52.381 12.00 0.00 0.00 3.16
1987 2053 2.169561 GAGATCTCCCTGTTCCCTGTTC 59.830 54.545 12.00 0.00 0.00 3.18
1988 2054 2.192263 GATCTCCCTGTTCCCTGTTCT 58.808 52.381 0.00 0.00 0.00 3.01
1989 2055 2.118403 TCTCCCTGTTCCCTGTTCTT 57.882 50.000 0.00 0.00 0.00 2.52
1990 2056 1.978580 TCTCCCTGTTCCCTGTTCTTC 59.021 52.381 0.00 0.00 0.00 2.87
1991 2057 1.981495 CTCCCTGTTCCCTGTTCTTCT 59.019 52.381 0.00 0.00 0.00 2.85
1992 2058 3.173965 CTCCCTGTTCCCTGTTCTTCTA 58.826 50.000 0.00 0.00 0.00 2.10
1993 2059 3.583086 CTCCCTGTTCCCTGTTCTTCTAA 59.417 47.826 0.00 0.00 0.00 2.10
1994 2060 3.977999 TCCCTGTTCCCTGTTCTTCTAAA 59.022 43.478 0.00 0.00 0.00 1.85
1995 2061 4.414182 TCCCTGTTCCCTGTTCTTCTAAAA 59.586 41.667 0.00 0.00 0.00 1.52
1996 2062 5.103855 TCCCTGTTCCCTGTTCTTCTAAAAA 60.104 40.000 0.00 0.00 0.00 1.94
2015 2081 3.771577 AAAAGACAAGATGAGGTCGGT 57.228 42.857 0.00 0.00 39.01 4.69
2016 2082 3.771577 AAAGACAAGATGAGGTCGGTT 57.228 42.857 0.00 0.00 39.01 4.44
2017 2083 2.751166 AGACAAGATGAGGTCGGTTG 57.249 50.000 0.00 0.00 39.01 3.77
2018 2084 2.248248 AGACAAGATGAGGTCGGTTGA 58.752 47.619 0.00 0.00 39.01 3.18
2019 2085 2.232452 AGACAAGATGAGGTCGGTTGAG 59.768 50.000 0.00 0.00 39.01 3.02
2020 2086 1.971357 ACAAGATGAGGTCGGTTGAGT 59.029 47.619 0.00 0.00 0.00 3.41
2021 2087 2.028930 ACAAGATGAGGTCGGTTGAGTC 60.029 50.000 0.00 0.00 0.00 3.36
2022 2088 1.924731 AGATGAGGTCGGTTGAGTCA 58.075 50.000 0.00 0.00 0.00 3.41
2023 2089 2.461695 AGATGAGGTCGGTTGAGTCAT 58.538 47.619 0.00 0.00 33.60 3.06
2024 2090 2.167281 AGATGAGGTCGGTTGAGTCATG 59.833 50.000 0.00 0.00 31.92 3.07
2025 2091 0.608130 TGAGGTCGGTTGAGTCATGG 59.392 55.000 0.00 0.00 0.00 3.66
2026 2092 0.108138 GAGGTCGGTTGAGTCATGGG 60.108 60.000 0.00 0.00 0.00 4.00
2027 2093 1.745489 GGTCGGTTGAGTCATGGGC 60.745 63.158 0.00 0.00 0.00 5.36
2028 2094 1.745489 GTCGGTTGAGTCATGGGCC 60.745 63.158 0.00 0.00 0.00 5.80
2029 2095 1.918293 TCGGTTGAGTCATGGGCCT 60.918 57.895 4.53 0.00 0.00 5.19
2030 2096 1.450312 CGGTTGAGTCATGGGCCTC 60.450 63.158 4.53 0.00 0.00 4.70
2031 2097 1.077429 GGTTGAGTCATGGGCCTCC 60.077 63.158 4.53 0.00 0.00 4.30
2032 2098 1.566298 GGTTGAGTCATGGGCCTCCT 61.566 60.000 4.53 0.00 0.00 3.69
2033 2099 0.393537 GTTGAGTCATGGGCCTCCTG 60.394 60.000 4.53 0.00 0.00 3.86
2034 2100 1.565390 TTGAGTCATGGGCCTCCTGG 61.565 60.000 4.53 0.00 0.00 4.45
2044 2110 3.415186 CCTCCTGGCCTGCCTAAA 58.585 61.111 9.97 0.00 36.94 1.85
2045 2111 1.691219 CCTCCTGGCCTGCCTAAAA 59.309 57.895 9.97 0.00 36.94 1.52
2046 2112 0.259938 CCTCCTGGCCTGCCTAAAAT 59.740 55.000 9.97 0.00 36.94 1.82
2047 2113 1.494721 CCTCCTGGCCTGCCTAAAATA 59.505 52.381 9.97 0.00 36.94 1.40
2048 2114 2.108952 CCTCCTGGCCTGCCTAAAATAT 59.891 50.000 9.97 0.00 36.94 1.28
2049 2115 3.330701 CCTCCTGGCCTGCCTAAAATATA 59.669 47.826 9.97 0.00 36.94 0.86
2050 2116 4.202567 CCTCCTGGCCTGCCTAAAATATAA 60.203 45.833 9.97 0.00 36.94 0.98
2051 2117 4.725490 TCCTGGCCTGCCTAAAATATAAC 58.275 43.478 9.97 0.00 36.94 1.89
2052 2118 3.502211 CCTGGCCTGCCTAAAATATAACG 59.498 47.826 9.97 0.00 36.94 3.18
2053 2119 2.882137 TGGCCTGCCTAAAATATAACGC 59.118 45.455 9.97 0.00 36.94 4.84
2054 2120 2.882137 GGCCTGCCTAAAATATAACGCA 59.118 45.455 0.00 0.00 0.00 5.24
2055 2121 3.058224 GGCCTGCCTAAAATATAACGCAG 60.058 47.826 0.00 0.00 42.58 5.18
2056 2122 7.895476 TGGCCTGCCTAAAATATAACGCAGT 62.895 44.000 9.97 0.00 41.63 4.40
2057 2123 4.554723 GCCTGCCTAAAATATAACGCAGTG 60.555 45.833 6.16 0.00 45.00 3.66
2058 2124 4.024048 CCTGCCTAAAATATAACGCAGTGG 60.024 45.833 6.16 0.00 45.00 4.00
2059 2125 3.880490 TGCCTAAAATATAACGCAGTGGG 59.120 43.478 5.50 5.50 45.00 4.61
2060 2126 3.304458 GCCTAAAATATAACGCAGTGGGC 60.304 47.826 7.17 0.00 45.00 5.36
2061 2127 3.252458 CCTAAAATATAACGCAGTGGGCC 59.748 47.826 7.17 0.00 45.00 5.80
2062 2128 2.428544 AAATATAACGCAGTGGGCCA 57.571 45.000 0.00 0.00 45.00 5.36
2063 2129 2.428544 AATATAACGCAGTGGGCCAA 57.571 45.000 8.40 0.00 45.00 4.52
2064 2130 2.428544 ATATAACGCAGTGGGCCAAA 57.571 45.000 8.40 0.00 45.00 3.28
2065 2131 2.201921 TATAACGCAGTGGGCCAAAA 57.798 45.000 8.40 0.00 45.00 2.44
2066 2132 0.887933 ATAACGCAGTGGGCCAAAAG 59.112 50.000 8.40 1.57 45.00 2.27
2067 2133 1.175983 TAACGCAGTGGGCCAAAAGG 61.176 55.000 8.40 0.29 45.00 3.11
2068 2134 3.683937 CGCAGTGGGCCAAAAGGG 61.684 66.667 8.40 5.74 40.31 3.95
2069 2135 2.203625 GCAGTGGGCCAAAAGGGA 60.204 61.111 8.40 0.00 40.01 4.20
2070 2136 1.836604 GCAGTGGGCCAAAAGGGAA 60.837 57.895 8.40 0.00 40.01 3.97
2071 2137 2.049435 CAGTGGGCCAAAAGGGAAC 58.951 57.895 8.40 0.00 40.01 3.62
2097 2163 3.845259 GGCCTACCGCATCGACCA 61.845 66.667 0.00 0.00 40.31 4.02
2098 2164 2.185867 GCCTACCGCATCGACCAA 59.814 61.111 0.00 0.00 37.47 3.67
2099 2165 2.171725 GCCTACCGCATCGACCAAC 61.172 63.158 0.00 0.00 37.47 3.77
2100 2166 1.216977 CCTACCGCATCGACCAACA 59.783 57.895 0.00 0.00 0.00 3.33
2101 2167 0.806102 CCTACCGCATCGACCAACAG 60.806 60.000 0.00 0.00 0.00 3.16
2102 2168 0.172578 CTACCGCATCGACCAACAGA 59.827 55.000 0.00 0.00 0.00 3.41
2103 2169 0.172578 TACCGCATCGACCAACAGAG 59.827 55.000 0.00 0.00 0.00 3.35
2104 2170 1.215382 CCGCATCGACCAACAGAGA 59.785 57.895 0.00 0.00 0.00 3.10
2105 2171 0.803768 CCGCATCGACCAACAGAGAG 60.804 60.000 0.00 0.00 0.00 3.20
2106 2172 0.109086 CGCATCGACCAACAGAGAGT 60.109 55.000 0.00 0.00 0.00 3.24
2107 2173 1.634702 GCATCGACCAACAGAGAGTC 58.365 55.000 0.00 0.00 0.00 3.36
2108 2174 1.203523 GCATCGACCAACAGAGAGTCT 59.796 52.381 0.00 0.00 0.00 3.24
2109 2175 2.733858 GCATCGACCAACAGAGAGTCTC 60.734 54.545 12.54 12.54 0.00 3.36
2110 2176 2.271944 TCGACCAACAGAGAGTCTCA 57.728 50.000 22.05 0.00 32.06 3.27
2111 2177 1.880675 TCGACCAACAGAGAGTCTCAC 59.119 52.381 22.05 0.00 32.06 3.51
2112 2178 1.068194 CGACCAACAGAGAGTCTCACC 60.068 57.143 22.05 0.00 32.06 4.02
2113 2179 2.243810 GACCAACAGAGAGTCTCACCT 58.756 52.381 22.05 2.65 32.06 4.00
2114 2180 2.630580 GACCAACAGAGAGTCTCACCTT 59.369 50.000 22.05 6.99 32.06 3.50
2115 2181 3.827302 GACCAACAGAGAGTCTCACCTTA 59.173 47.826 22.05 0.00 32.06 2.69
2116 2182 4.223953 ACCAACAGAGAGTCTCACCTTAA 58.776 43.478 22.05 0.00 32.06 1.85
2117 2183 4.039366 ACCAACAGAGAGTCTCACCTTAAC 59.961 45.833 22.05 0.00 32.06 2.01
2118 2184 4.282195 CCAACAGAGAGTCTCACCTTAACT 59.718 45.833 22.05 0.00 32.06 2.24
2119 2185 5.226396 CAACAGAGAGTCTCACCTTAACTG 58.774 45.833 22.05 10.95 32.06 3.16
2120 2186 3.829601 ACAGAGAGTCTCACCTTAACTGG 59.170 47.826 22.05 1.47 32.06 4.00
2121 2187 3.829601 CAGAGAGTCTCACCTTAACTGGT 59.170 47.826 22.05 0.00 41.77 4.00
2122 2188 4.082463 CAGAGAGTCTCACCTTAACTGGTC 60.082 50.000 22.05 0.00 38.45 4.02
2123 2189 3.166679 AGAGTCTCACCTTAACTGGTCC 58.833 50.000 1.94 0.00 38.45 4.46
2124 2190 2.897969 GAGTCTCACCTTAACTGGTCCA 59.102 50.000 0.00 0.00 38.45 4.02
2125 2191 2.900546 AGTCTCACCTTAACTGGTCCAG 59.099 50.000 17.88 17.88 38.45 3.86
2126 2192 1.623811 TCTCACCTTAACTGGTCCAGC 59.376 52.381 19.40 0.00 38.45 4.85
2127 2193 1.625818 CTCACCTTAACTGGTCCAGCT 59.374 52.381 19.40 9.60 38.45 4.24
2128 2194 2.832129 CTCACCTTAACTGGTCCAGCTA 59.168 50.000 19.40 8.45 38.45 3.32
2129 2195 2.565834 TCACCTTAACTGGTCCAGCTAC 59.434 50.000 19.40 0.00 38.45 3.58
2130 2196 1.907255 ACCTTAACTGGTCCAGCTACC 59.093 52.381 19.40 0.00 34.86 3.18
2131 2197 2.188817 CCTTAACTGGTCCAGCTACCT 58.811 52.381 19.40 0.00 40.44 3.08
2132 2198 2.572104 CCTTAACTGGTCCAGCTACCTT 59.428 50.000 19.40 7.79 40.44 3.50
2133 2199 3.369576 CCTTAACTGGTCCAGCTACCTTC 60.370 52.174 19.40 0.00 40.44 3.46
2134 2200 1.729586 AACTGGTCCAGCTACCTTCA 58.270 50.000 19.40 0.00 40.44 3.02
2135 2201 1.729586 ACTGGTCCAGCTACCTTCAA 58.270 50.000 19.40 0.00 40.44 2.69
2136 2202 1.625818 ACTGGTCCAGCTACCTTCAAG 59.374 52.381 19.40 0.00 40.44 3.02
2137 2203 1.625818 CTGGTCCAGCTACCTTCAAGT 59.374 52.381 5.79 0.00 40.44 3.16
2138 2204 2.039084 CTGGTCCAGCTACCTTCAAGTT 59.961 50.000 5.79 0.00 40.44 2.66
2139 2205 2.038557 TGGTCCAGCTACCTTCAAGTTC 59.961 50.000 7.19 0.00 40.44 3.01
2140 2206 2.338500 GTCCAGCTACCTTCAAGTTCG 58.662 52.381 0.00 0.00 0.00 3.95
2141 2207 1.275291 TCCAGCTACCTTCAAGTTCGG 59.725 52.381 0.00 0.00 0.00 4.30
2142 2208 1.079503 CAGCTACCTTCAAGTTCGGC 58.920 55.000 0.00 0.00 0.00 5.54
2143 2209 0.036294 AGCTACCTTCAAGTTCGGCC 60.036 55.000 0.00 0.00 0.00 6.13
2144 2210 1.359459 GCTACCTTCAAGTTCGGCCG 61.359 60.000 22.12 22.12 0.00 6.13
2145 2211 0.245539 CTACCTTCAAGTTCGGCCGA 59.754 55.000 27.28 27.28 0.00 5.54
2146 2212 0.899720 TACCTTCAAGTTCGGCCGAT 59.100 50.000 31.56 13.09 0.00 4.18
2147 2213 0.036306 ACCTTCAAGTTCGGCCGATT 59.964 50.000 31.56 19.21 0.00 3.34
2148 2214 1.276989 ACCTTCAAGTTCGGCCGATTA 59.723 47.619 31.56 13.09 0.00 1.75
2149 2215 1.933853 CCTTCAAGTTCGGCCGATTAG 59.066 52.381 31.56 18.94 0.00 1.73
2150 2216 1.327764 CTTCAAGTTCGGCCGATTAGC 59.672 52.381 31.56 18.90 0.00 3.09
2151 2217 0.535335 TCAAGTTCGGCCGATTAGCT 59.465 50.000 31.56 20.83 0.00 3.32
2152 2218 1.066430 TCAAGTTCGGCCGATTAGCTT 60.066 47.619 31.56 24.95 0.00 3.74
2153 2219 1.327764 CAAGTTCGGCCGATTAGCTTC 59.672 52.381 31.56 12.98 0.00 3.86
2154 2220 0.527817 AGTTCGGCCGATTAGCTTCG 60.528 55.000 31.56 0.00 38.83 3.79
2155 2221 0.804933 GTTCGGCCGATTAGCTTCGT 60.805 55.000 31.56 0.00 37.42 3.85
2156 2222 0.740149 TTCGGCCGATTAGCTTCGTA 59.260 50.000 31.56 6.73 37.42 3.43
2157 2223 0.029834 TCGGCCGATTAGCTTCGTAC 59.970 55.000 27.28 0.00 37.42 3.67
2158 2224 0.938168 CGGCCGATTAGCTTCGTACC 60.938 60.000 24.07 6.97 37.42 3.34
2159 2225 0.388294 GGCCGATTAGCTTCGTACCT 59.612 55.000 7.03 0.00 37.42 3.08
2160 2226 1.202498 GGCCGATTAGCTTCGTACCTT 60.202 52.381 7.03 0.00 37.42 3.50
2161 2227 2.035066 GGCCGATTAGCTTCGTACCTTA 59.965 50.000 7.03 0.00 37.42 2.69
2162 2228 3.305881 GGCCGATTAGCTTCGTACCTTAT 60.306 47.826 7.03 0.00 37.42 1.73
2163 2229 4.304939 GCCGATTAGCTTCGTACCTTATT 58.695 43.478 7.03 0.00 37.42 1.40
2164 2230 4.748600 GCCGATTAGCTTCGTACCTTATTT 59.251 41.667 7.03 0.00 37.42 1.40
2165 2231 5.235831 GCCGATTAGCTTCGTACCTTATTTT 59.764 40.000 7.03 0.00 37.42 1.82
2166 2232 6.646636 CCGATTAGCTTCGTACCTTATTTTG 58.353 40.000 7.03 0.00 37.42 2.44
2167 2233 6.257193 CCGATTAGCTTCGTACCTTATTTTGT 59.743 38.462 7.03 0.00 37.42 2.83
2168 2234 7.436080 CCGATTAGCTTCGTACCTTATTTTGTA 59.564 37.037 7.03 0.00 37.42 2.41
2169 2235 8.975439 CGATTAGCTTCGTACCTTATTTTGTAT 58.025 33.333 0.00 0.00 34.46 2.29
2173 2239 8.788325 AGCTTCGTACCTTATTTTGTATTTCT 57.212 30.769 0.00 0.00 0.00 2.52
2174 2240 9.227777 AGCTTCGTACCTTATTTTGTATTTCTT 57.772 29.630 0.00 0.00 0.00 2.52
2218 2284 5.803020 AGAGACATTTATTCACCTTTCGC 57.197 39.130 0.00 0.00 0.00 4.70
2219 2285 5.245531 AGAGACATTTATTCACCTTTCGCA 58.754 37.500 0.00 0.00 0.00 5.10
2220 2286 5.705441 AGAGACATTTATTCACCTTTCGCAA 59.295 36.000 0.00 0.00 0.00 4.85
2221 2287 6.375455 AGAGACATTTATTCACCTTTCGCAAT 59.625 34.615 0.00 0.00 0.00 3.56
2222 2288 6.555315 AGACATTTATTCACCTTTCGCAATC 58.445 36.000 0.00 0.00 0.00 2.67
2223 2289 6.150976 AGACATTTATTCACCTTTCGCAATCA 59.849 34.615 0.00 0.00 0.00 2.57
2224 2290 6.686630 ACATTTATTCACCTTTCGCAATCAA 58.313 32.000 0.00 0.00 0.00 2.57
2225 2291 7.322664 ACATTTATTCACCTTTCGCAATCAAT 58.677 30.769 0.00 0.00 0.00 2.57
2226 2292 7.818930 ACATTTATTCACCTTTCGCAATCAATT 59.181 29.630 0.00 0.00 0.00 2.32
2227 2293 8.658609 CATTTATTCACCTTTCGCAATCAATTT 58.341 29.630 0.00 0.00 0.00 1.82
2228 2294 8.600449 TTTATTCACCTTTCGCAATCAATTTT 57.400 26.923 0.00 0.00 0.00 1.82
2229 2295 8.600449 TTATTCACCTTTCGCAATCAATTTTT 57.400 26.923 0.00 0.00 0.00 1.94
2289 2355 8.988064 TGAACAGTTTTTAAAAATACAGTGCA 57.012 26.923 16.02 10.01 27.94 4.57
2290 2356 8.865001 TGAACAGTTTTTAAAAATACAGTGCAC 58.135 29.630 16.02 9.40 26.36 4.57
2291 2357 8.764524 AACAGTTTTTAAAAATACAGTGCACA 57.235 26.923 21.04 0.00 0.00 4.57
2292 2358 8.940768 ACAGTTTTTAAAAATACAGTGCACAT 57.059 26.923 21.04 9.36 0.00 3.21
2293 2359 9.377312 ACAGTTTTTAAAAATACAGTGCACATT 57.623 25.926 21.04 7.37 0.00 2.71
2307 2373 8.792830 ACAGTGCACATTATAAAATAGACACT 57.207 30.769 21.04 0.00 35.16 3.55
2310 2376 9.102757 AGTGCACATTATAAAATAGACACTGAG 57.897 33.333 21.04 0.00 33.67 3.35
2311 2377 8.338259 GTGCACATTATAAAATAGACACTGAGG 58.662 37.037 13.17 0.00 0.00 3.86
2312 2378 8.264347 TGCACATTATAAAATAGACACTGAGGA 58.736 33.333 0.00 0.00 0.00 3.71
2313 2379 9.277783 GCACATTATAAAATAGACACTGAGGAT 57.722 33.333 0.00 0.00 0.00 3.24
2325 2391 7.540474 AGACACTGAGGATTCTTTTACTACA 57.460 36.000 0.00 0.00 0.00 2.74
2326 2392 7.379750 AGACACTGAGGATTCTTTTACTACAC 58.620 38.462 0.00 0.00 0.00 2.90
2327 2393 6.157211 ACACTGAGGATTCTTTTACTACACG 58.843 40.000 0.00 0.00 0.00 4.49
2328 2394 6.015688 ACACTGAGGATTCTTTTACTACACGA 60.016 38.462 0.00 0.00 0.00 4.35
2329 2395 7.036220 CACTGAGGATTCTTTTACTACACGAT 58.964 38.462 0.00 0.00 0.00 3.73
2330 2396 7.009631 CACTGAGGATTCTTTTACTACACGATG 59.990 40.741 0.00 0.00 0.00 3.84
2331 2397 7.093902 ACTGAGGATTCTTTTACTACACGATGA 60.094 37.037 0.00 0.00 0.00 2.92
2332 2398 7.608153 TGAGGATTCTTTTACTACACGATGAA 58.392 34.615 0.00 0.00 0.00 2.57
2333 2399 8.258007 TGAGGATTCTTTTACTACACGATGAAT 58.742 33.333 0.00 0.00 0.00 2.57
2334 2400 9.745880 GAGGATTCTTTTACTACACGATGAATA 57.254 33.333 0.00 0.00 0.00 1.75
2341 2407 9.632969 CTTTTACTACACGATGAATATTTTCCG 57.367 33.333 0.00 0.00 0.00 4.30
2342 2408 8.929827 TTTACTACACGATGAATATTTTCCGA 57.070 30.769 10.01 0.00 0.00 4.55
2343 2409 9.537192 TTTACTACACGATGAATATTTTCCGAT 57.463 29.630 10.01 3.03 0.00 4.18
2345 2411 8.516811 ACTACACGATGAATATTTTCCGATAC 57.483 34.615 10.01 0.00 0.00 2.24
2346 2412 8.139350 ACTACACGATGAATATTTTCCGATACA 58.861 33.333 10.01 0.00 0.00 2.29
2347 2413 7.780008 ACACGATGAATATTTTCCGATACAA 57.220 32.000 10.01 0.00 0.00 2.41
2348 2414 7.851508 ACACGATGAATATTTTCCGATACAAG 58.148 34.615 10.01 0.00 0.00 3.16
2349 2415 7.709182 ACACGATGAATATTTTCCGATACAAGA 59.291 33.333 10.01 0.00 0.00 3.02
2350 2416 8.712363 CACGATGAATATTTTCCGATACAAGAT 58.288 33.333 10.01 0.00 0.00 2.40
2351 2417 8.712363 ACGATGAATATTTTCCGATACAAGATG 58.288 33.333 10.01 0.00 0.00 2.90
2352 2418 7.689812 CGATGAATATTTTCCGATACAAGATGC 59.310 37.037 0.00 0.00 0.00 3.91
2353 2419 6.887368 TGAATATTTTCCGATACAAGATGCG 58.113 36.000 0.00 0.00 0.00 4.73
2354 2420 3.609103 ATTTTCCGATACAAGATGCGC 57.391 42.857 0.00 0.00 0.00 6.09
2355 2421 2.017138 TTTCCGATACAAGATGCGCA 57.983 45.000 14.96 14.96 0.00 6.09
2356 2422 2.238942 TTCCGATACAAGATGCGCAT 57.761 45.000 25.66 25.66 0.00 4.73
2357 2423 1.783284 TCCGATACAAGATGCGCATC 58.217 50.000 37.29 37.29 38.09 3.91
2358 2424 1.068434 TCCGATACAAGATGCGCATCA 59.932 47.619 42.35 27.48 40.22 3.07
2359 2425 1.866601 CCGATACAAGATGCGCATCAA 59.133 47.619 42.35 28.01 40.22 2.57
2360 2426 2.287644 CCGATACAAGATGCGCATCAAA 59.712 45.455 42.35 27.71 40.22 2.69
2361 2427 3.242706 CCGATACAAGATGCGCATCAAAA 60.243 43.478 42.35 28.01 40.22 2.44
2362 2428 4.341935 CGATACAAGATGCGCATCAAAAA 58.658 39.130 42.35 28.32 40.22 1.94
2363 2429 4.971830 CGATACAAGATGCGCATCAAAAAT 59.028 37.500 42.35 30.92 40.22 1.82
2364 2430 5.456497 CGATACAAGATGCGCATCAAAAATT 59.544 36.000 42.35 28.52 40.22 1.82
2365 2431 6.020440 CGATACAAGATGCGCATCAAAAATTT 60.020 34.615 42.35 27.88 40.22 1.82
2366 2432 7.165647 CGATACAAGATGCGCATCAAAAATTTA 59.834 33.333 42.35 25.65 40.22 1.40
2367 2433 6.393720 ACAAGATGCGCATCAAAAATTTAC 57.606 33.333 42.35 19.55 40.22 2.01
2368 2434 5.925397 ACAAGATGCGCATCAAAAATTTACA 59.075 32.000 42.35 4.86 40.22 2.41
2369 2435 6.591062 ACAAGATGCGCATCAAAAATTTACAT 59.409 30.769 42.35 21.03 40.22 2.29
2370 2436 6.578020 AGATGCGCATCAAAAATTTACATG 57.422 33.333 42.35 0.00 40.22 3.21
2371 2437 6.331845 AGATGCGCATCAAAAATTTACATGA 58.668 32.000 42.35 3.34 40.22 3.07
2372 2438 6.982141 AGATGCGCATCAAAAATTTACATGAT 59.018 30.769 42.35 19.84 40.22 2.45
2373 2439 8.136800 AGATGCGCATCAAAAATTTACATGATA 58.863 29.630 42.35 2.55 40.22 2.15
2374 2440 8.645730 ATGCGCATCAAAAATTTACATGATAA 57.354 26.923 19.28 0.00 31.59 1.75
2375 2441 7.893824 TGCGCATCAAAAATTTACATGATAAC 58.106 30.769 5.66 7.90 31.59 1.89
2376 2442 7.543520 TGCGCATCAAAAATTTACATGATAACA 59.456 29.630 5.66 8.65 31.59 2.41
2377 2443 8.379161 GCGCATCAAAAATTTACATGATAACAA 58.621 29.630 0.30 0.00 31.59 2.83
2405 2471 7.824704 ATAAATACGCATTGCACATTTTTCA 57.175 28.000 17.56 5.88 0.00 2.69
2406 2472 6.536731 AAATACGCATTGCACATTTTTCAA 57.463 29.167 9.69 0.00 0.00 2.69
2407 2473 6.536731 AATACGCATTGCACATTTTTCAAA 57.463 29.167 9.69 0.00 0.00 2.69
2408 2474 6.724694 ATACGCATTGCACATTTTTCAAAT 57.275 29.167 9.69 0.00 0.00 2.32
2409 2475 7.824704 ATACGCATTGCACATTTTTCAAATA 57.175 28.000 9.69 0.00 0.00 1.40
2410 2476 6.724694 ACGCATTGCACATTTTTCAAATAT 57.275 29.167 9.69 0.00 0.00 1.28
2411 2477 6.764094 ACGCATTGCACATTTTTCAAATATC 58.236 32.000 9.69 0.00 0.00 1.63
2412 2478 6.368243 ACGCATTGCACATTTTTCAAATATCA 59.632 30.769 9.69 0.00 0.00 2.15
2413 2479 7.064847 ACGCATTGCACATTTTTCAAATATCAT 59.935 29.630 9.69 0.00 0.00 2.45
2414 2480 7.581241 CGCATTGCACATTTTTCAAATATCATC 59.419 33.333 9.69 0.00 0.00 2.92
2415 2481 7.853929 GCATTGCACATTTTTCAAATATCATCC 59.146 33.333 3.15 0.00 0.00 3.51
2416 2482 9.104965 CATTGCACATTTTTCAAATATCATCCT 57.895 29.630 0.00 0.00 0.00 3.24
2417 2483 8.481974 TTGCACATTTTTCAAATATCATCCTG 57.518 30.769 0.00 0.00 0.00 3.86
2418 2484 6.535865 TGCACATTTTTCAAATATCATCCTGC 59.464 34.615 0.00 0.00 0.00 4.85
2419 2485 6.535865 GCACATTTTTCAAATATCATCCTGCA 59.464 34.615 0.00 0.00 0.00 4.41
2420 2486 7.225931 GCACATTTTTCAAATATCATCCTGCAT 59.774 33.333 0.00 0.00 0.00 3.96
2421 2487 9.104965 CACATTTTTCAAATATCATCCTGCATT 57.895 29.630 0.00 0.00 0.00 3.56
2422 2488 9.675464 ACATTTTTCAAATATCATCCTGCATTT 57.325 25.926 0.00 0.00 0.00 2.32
2521 2587 8.877864 ACCTGAAGAATATTTTTGATACACCA 57.122 30.769 0.00 0.00 0.00 4.17
2522 2588 9.479549 ACCTGAAGAATATTTTTGATACACCAT 57.520 29.630 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 7.397476 TGAGTTGACTCTTACCATAGTTGATCT 59.603 37.037 12.00 0.00 43.25 2.75
87 88 6.487668 TCATCTATGTTAATGGGCATGAGTTG 59.512 38.462 0.00 0.00 0.00 3.16
95 96 6.471146 ACTCTCATCATCTATGTTAATGGGC 58.529 40.000 0.00 0.00 36.89 5.36
122 123 5.624509 GCCTAAAACCTCCATAAAAAGGCTG 60.625 44.000 0.00 0.00 42.89 4.85
213 215 3.596046 TCAATTAGGGGTTGGATGTCCTT 59.404 43.478 0.09 0.00 36.82 3.36
305 307 1.150081 GCTAGCCAGACATGCCCAT 59.850 57.895 2.29 0.00 0.00 4.00
306 308 1.638679 ATGCTAGCCAGACATGCCCA 61.639 55.000 13.29 0.00 0.00 5.36
307 309 0.466922 AATGCTAGCCAGACATGCCC 60.467 55.000 13.29 0.00 0.00 5.36
308 310 0.950116 GAATGCTAGCCAGACATGCC 59.050 55.000 13.29 0.00 0.00 4.40
314 316 5.836705 AGATAGATAGGAATGCTAGCCAGA 58.163 41.667 13.29 0.00 0.00 3.86
360 362 3.889815 TGATCAGGTCAATGTCCCATTC 58.110 45.455 0.00 0.00 32.78 2.67
716 721 6.874278 TCTTCCCAGAATCTGATTTGAGTA 57.126 37.500 12.53 0.00 32.44 2.59
761 766 1.200948 GACCAGAATTGAACTGCCAGC 59.799 52.381 0.00 0.00 34.47 4.85
945 950 8.658840 TTATTTTCTAGTTGCCAAATAAGGGT 57.341 30.769 0.00 0.00 30.90 4.34
997 1002 6.553476 ACCCCTCCTAAAATTAATAACATGGC 59.447 38.462 0.00 0.00 0.00 4.40
1056 1063 4.885325 ACGTGAATTTTTGGAGGTACAACT 59.115 37.500 0.00 0.00 0.00 3.16
1096 1107 5.278463 CCCTTGTCAACAACTTGTTATGAGG 60.278 44.000 6.84 11.07 38.77 3.86
1160 1171 2.303890 TCATTCTCAGCACAGGACACAT 59.696 45.455 0.00 0.00 0.00 3.21
1166 1177 2.486982 CTGGTTTCATTCTCAGCACAGG 59.513 50.000 0.00 0.00 0.00 4.00
1193 1204 5.005299 GCTACCACACATTCAAACAACAAAC 59.995 40.000 0.00 0.00 0.00 2.93
1266 1278 2.491298 TGCAACAGACTCAAAGTTTGCA 59.509 40.909 10.90 11.60 43.24 4.08
1304 1316 9.216117 TGGTATTTAAAGCAGAGTTCTTCTTAC 57.784 33.333 0.00 0.00 32.41 2.34
1336 1352 4.338118 CCACAAACACCATAAGACAACAGT 59.662 41.667 0.00 0.00 0.00 3.55
1392 1412 7.496346 AACCTGAGTCATAGAAGTCCAAATA 57.504 36.000 0.00 0.00 0.00 1.40
1444 1464 2.315386 GCGACAGGACAAACCGGAC 61.315 63.158 9.46 0.00 44.74 4.79
1447 1467 3.411351 CGGCGACAGGACAAACCG 61.411 66.667 0.00 0.00 44.74 4.44
1516 1536 2.755655 GGATTCTCAGAGGTTGTCGAGA 59.244 50.000 0.00 0.00 34.84 4.04
1562 1594 1.592669 CTCCAGCGGGCTAACATCG 60.593 63.158 0.00 0.00 0.00 3.84
1641 1675 3.874543 TGTACACAGTGCTTTTGTTCGAT 59.125 39.130 0.00 0.00 0.00 3.59
1661 1695 4.559502 GTGTTGACACTGGGCTGT 57.440 55.556 7.01 0.00 43.25 4.40
1754 1788 5.521372 TCATATATTGCTAGCATCATCACGC 59.479 40.000 20.13 0.00 0.00 5.34
1773 1807 4.263199 CCACATCCCACATAGCAGTCATAT 60.263 45.833 0.00 0.00 0.00 1.78
1776 1810 1.210234 CCACATCCCACATAGCAGTCA 59.790 52.381 0.00 0.00 0.00 3.41
1780 1814 0.625316 AAGCCACATCCCACATAGCA 59.375 50.000 0.00 0.00 0.00 3.49
1781 1815 1.133976 AGAAGCCACATCCCACATAGC 60.134 52.381 0.00 0.00 0.00 2.97
1782 1816 3.287867 AAGAAGCCACATCCCACATAG 57.712 47.619 0.00 0.00 0.00 2.23
1784 1818 2.042162 AGAAAGAAGCCACATCCCACAT 59.958 45.455 0.00 0.00 0.00 3.21
1785 1819 1.425066 AGAAAGAAGCCACATCCCACA 59.575 47.619 0.00 0.00 0.00 4.17
1786 1820 2.206576 AGAAAGAAGCCACATCCCAC 57.793 50.000 0.00 0.00 0.00 4.61
1787 1821 2.978156 AAGAAAGAAGCCACATCCCA 57.022 45.000 0.00 0.00 0.00 4.37
1788 1822 3.192212 CAGAAAGAAAGAAGCCACATCCC 59.808 47.826 0.00 0.00 0.00 3.85
1789 1823 3.366781 GCAGAAAGAAAGAAGCCACATCC 60.367 47.826 0.00 0.00 0.00 3.51
1790 1824 3.505293 AGCAGAAAGAAAGAAGCCACATC 59.495 43.478 0.00 0.00 0.00 3.06
1791 1825 3.494332 AGCAGAAAGAAAGAAGCCACAT 58.506 40.909 0.00 0.00 0.00 3.21
1797 1831 4.153835 AGCGATCAAGCAGAAAGAAAGAAG 59.846 41.667 0.00 0.00 40.15 2.85
1798 1832 4.067896 AGCGATCAAGCAGAAAGAAAGAA 58.932 39.130 0.00 0.00 40.15 2.52
1800 1834 5.731599 ATAGCGATCAAGCAGAAAGAAAG 57.268 39.130 0.00 0.00 40.15 2.62
1804 1840 5.973651 TGTTATAGCGATCAAGCAGAAAG 57.026 39.130 0.00 0.00 40.15 2.62
1807 1843 7.606349 AGATATTGTTATAGCGATCAAGCAGA 58.394 34.615 0.00 0.00 40.15 4.26
1808 1844 7.758980 AGAGATATTGTTATAGCGATCAAGCAG 59.241 37.037 0.00 0.00 40.15 4.24
1817 1853 8.951954 ACGAACTTAGAGATATTGTTATAGCG 57.048 34.615 0.00 0.00 0.00 4.26
1822 1858 8.869897 CAGCAAACGAACTTAGAGATATTGTTA 58.130 33.333 0.00 0.00 0.00 2.41
1823 1859 7.148407 CCAGCAAACGAACTTAGAGATATTGTT 60.148 37.037 0.00 0.00 0.00 2.83
1834 1870 1.543871 GGGTCCCAGCAAACGAACTTA 60.544 52.381 1.78 0.00 0.00 2.24
1835 1871 0.822121 GGGTCCCAGCAAACGAACTT 60.822 55.000 1.78 0.00 0.00 2.66
1836 1872 1.228154 GGGTCCCAGCAAACGAACT 60.228 57.895 1.78 0.00 0.00 3.01
1837 1873 2.265904 GGGGTCCCAGCAAACGAAC 61.266 63.158 10.98 0.00 35.81 3.95
1849 1905 2.282462 CAACAGCCTGTGGGGTCC 60.282 66.667 0.00 0.00 42.03 4.46
1885 1951 9.847706 CATACTTAGTGGCATTACAGATACTAG 57.152 37.037 0.00 0.00 0.00 2.57
1948 2014 4.939052 TCTCTTCCCGATTCCATTACTC 57.061 45.455 0.00 0.00 0.00 2.59
1964 2030 2.225753 ACAGGGAACAGGGAGATCTCTT 60.226 50.000 21.81 8.59 25.08 2.85
1969 2035 2.350863 AGAACAGGGAACAGGGAGAT 57.649 50.000 0.00 0.00 0.00 2.75
1970 2036 1.978580 GAAGAACAGGGAACAGGGAGA 59.021 52.381 0.00 0.00 0.00 3.71
1994 2060 4.086706 ACCGACCTCATCTTGTCTTTTT 57.913 40.909 0.00 0.00 0.00 1.94
1995 2061 3.771577 ACCGACCTCATCTTGTCTTTT 57.228 42.857 0.00 0.00 0.00 2.27
1996 2062 3.071023 TCAACCGACCTCATCTTGTCTTT 59.929 43.478 0.00 0.00 0.00 2.52
1997 2063 2.632996 TCAACCGACCTCATCTTGTCTT 59.367 45.455 0.00 0.00 0.00 3.01
1998 2064 2.232452 CTCAACCGACCTCATCTTGTCT 59.768 50.000 0.00 0.00 0.00 3.41
1999 2065 2.028930 ACTCAACCGACCTCATCTTGTC 60.029 50.000 0.00 0.00 0.00 3.18
2000 2066 1.971357 ACTCAACCGACCTCATCTTGT 59.029 47.619 0.00 0.00 0.00 3.16
2001 2067 2.029020 TGACTCAACCGACCTCATCTTG 60.029 50.000 0.00 0.00 0.00 3.02
2002 2068 2.248248 TGACTCAACCGACCTCATCTT 58.752 47.619 0.00 0.00 0.00 2.40
2003 2069 1.924731 TGACTCAACCGACCTCATCT 58.075 50.000 0.00 0.00 0.00 2.90
2004 2070 2.544685 CATGACTCAACCGACCTCATC 58.455 52.381 0.00 0.00 0.00 2.92
2005 2071 1.208052 CCATGACTCAACCGACCTCAT 59.792 52.381 0.00 0.00 0.00 2.90
2006 2072 0.608130 CCATGACTCAACCGACCTCA 59.392 55.000 0.00 0.00 0.00 3.86
2007 2073 0.108138 CCCATGACTCAACCGACCTC 60.108 60.000 0.00 0.00 0.00 3.85
2008 2074 1.983224 CCCATGACTCAACCGACCT 59.017 57.895 0.00 0.00 0.00 3.85
2009 2075 1.745489 GCCCATGACTCAACCGACC 60.745 63.158 0.00 0.00 0.00 4.79
2010 2076 1.745489 GGCCCATGACTCAACCGAC 60.745 63.158 0.00 0.00 0.00 4.79
2011 2077 1.899437 GAGGCCCATGACTCAACCGA 61.899 60.000 0.00 0.00 33.95 4.69
2012 2078 1.450312 GAGGCCCATGACTCAACCG 60.450 63.158 0.00 0.00 33.95 4.44
2013 2079 1.077429 GGAGGCCCATGACTCAACC 60.077 63.158 0.00 0.00 35.45 3.77
2014 2080 0.393537 CAGGAGGCCCATGACTCAAC 60.394 60.000 0.00 0.00 35.45 3.18
2015 2081 1.565390 CCAGGAGGCCCATGACTCAA 61.565 60.000 0.00 0.00 35.45 3.02
2016 2082 1.997311 CCAGGAGGCCCATGACTCA 60.997 63.158 0.00 0.00 35.45 3.41
2017 2083 2.914289 CCAGGAGGCCCATGACTC 59.086 66.667 0.00 0.00 33.88 3.36
2027 2093 0.259938 ATTTTAGGCAGGCCAGGAGG 59.740 55.000 13.63 0.00 38.92 4.30
2028 2094 3.515602 ATATTTTAGGCAGGCCAGGAG 57.484 47.619 13.63 0.00 38.92 3.69
2029 2095 4.725490 GTTATATTTTAGGCAGGCCAGGA 58.275 43.478 13.63 0.00 38.92 3.86
2030 2096 3.502211 CGTTATATTTTAGGCAGGCCAGG 59.498 47.826 13.63 0.00 38.92 4.45
2031 2097 3.058224 GCGTTATATTTTAGGCAGGCCAG 60.058 47.826 13.63 0.00 38.92 4.85
2032 2098 2.882137 GCGTTATATTTTAGGCAGGCCA 59.118 45.455 13.63 0.00 38.92 5.36
2033 2099 2.882137 TGCGTTATATTTTAGGCAGGCC 59.118 45.455 0.97 0.97 32.13 5.19
2034 2100 4.147219 CTGCGTTATATTTTAGGCAGGC 57.853 45.455 14.21 0.00 44.94 4.85
2037 2103 3.880490 CCCACTGCGTTATATTTTAGGCA 59.120 43.478 0.00 0.00 34.42 4.75
2038 2104 3.304458 GCCCACTGCGTTATATTTTAGGC 60.304 47.826 0.00 0.00 0.00 3.93
2039 2105 3.252458 GGCCCACTGCGTTATATTTTAGG 59.748 47.826 0.00 0.00 42.61 2.69
2040 2106 3.880490 TGGCCCACTGCGTTATATTTTAG 59.120 43.478 0.00 0.00 42.61 1.85
2041 2107 3.887352 TGGCCCACTGCGTTATATTTTA 58.113 40.909 0.00 0.00 42.61 1.52
2042 2108 2.729194 TGGCCCACTGCGTTATATTTT 58.271 42.857 0.00 0.00 42.61 1.82
2043 2109 2.428544 TGGCCCACTGCGTTATATTT 57.571 45.000 0.00 0.00 42.61 1.40
2044 2110 2.428544 TTGGCCCACTGCGTTATATT 57.571 45.000 0.00 0.00 42.61 1.28
2045 2111 2.428544 TTTGGCCCACTGCGTTATAT 57.571 45.000 0.00 0.00 42.61 0.86
2046 2112 2.088423 CTTTTGGCCCACTGCGTTATA 58.912 47.619 0.00 0.00 42.61 0.98
2047 2113 0.887933 CTTTTGGCCCACTGCGTTAT 59.112 50.000 0.00 0.00 42.61 1.89
2048 2114 1.175983 CCTTTTGGCCCACTGCGTTA 61.176 55.000 0.00 0.00 42.61 3.18
2049 2115 2.498056 CCTTTTGGCCCACTGCGTT 61.498 57.895 0.00 0.00 42.61 4.84
2050 2116 2.912025 CCTTTTGGCCCACTGCGT 60.912 61.111 0.00 0.00 42.61 5.24
2051 2117 3.683937 CCCTTTTGGCCCACTGCG 61.684 66.667 0.00 0.00 42.61 5.18
2052 2118 1.836604 TTCCCTTTTGGCCCACTGC 60.837 57.895 0.00 0.00 38.58 4.40
2053 2119 1.471829 GGTTCCCTTTTGGCCCACTG 61.472 60.000 0.00 0.00 38.58 3.66
2054 2120 1.152333 GGTTCCCTTTTGGCCCACT 60.152 57.895 0.00 0.00 38.58 4.00
2055 2121 2.570284 CGGTTCCCTTTTGGCCCAC 61.570 63.158 0.00 0.00 38.58 4.61
2056 2122 2.203567 CGGTTCCCTTTTGGCCCA 60.204 61.111 0.00 0.00 38.58 5.36
2057 2123 2.203582 ACGGTTCCCTTTTGGCCC 60.204 61.111 0.00 0.00 38.58 5.80
2058 2124 1.830847 ACACGGTTCCCTTTTGGCC 60.831 57.895 0.00 0.00 38.58 5.36
2059 2125 1.104577 TCACACGGTTCCCTTTTGGC 61.105 55.000 0.00 0.00 38.58 4.52
2060 2126 0.666374 GTCACACGGTTCCCTTTTGG 59.334 55.000 0.00 0.00 39.97 3.28
2061 2127 0.306533 CGTCACACGGTTCCCTTTTG 59.693 55.000 0.00 0.00 38.08 2.44
2062 2128 2.697819 CGTCACACGGTTCCCTTTT 58.302 52.632 0.00 0.00 38.08 2.27
2063 2129 4.449391 CGTCACACGGTTCCCTTT 57.551 55.556 0.00 0.00 38.08 3.11
2080 2146 3.379865 TTGGTCGATGCGGTAGGCC 62.380 63.158 0.00 0.00 42.61 5.19
2081 2147 2.171725 GTTGGTCGATGCGGTAGGC 61.172 63.158 0.00 0.00 43.96 3.93
2082 2148 0.806102 CTGTTGGTCGATGCGGTAGG 60.806 60.000 0.00 0.00 0.00 3.18
2083 2149 0.172578 TCTGTTGGTCGATGCGGTAG 59.827 55.000 0.00 0.00 0.00 3.18
2084 2150 0.172578 CTCTGTTGGTCGATGCGGTA 59.827 55.000 0.00 0.00 0.00 4.02
2085 2151 1.079819 CTCTGTTGGTCGATGCGGT 60.080 57.895 0.00 0.00 0.00 5.68
2086 2152 0.803768 CTCTCTGTTGGTCGATGCGG 60.804 60.000 0.00 0.00 0.00 5.69
2087 2153 0.109086 ACTCTCTGTTGGTCGATGCG 60.109 55.000 0.00 0.00 0.00 4.73
2088 2154 1.203523 AGACTCTCTGTTGGTCGATGC 59.796 52.381 0.00 0.00 35.42 3.91
2089 2155 2.489722 TGAGACTCTCTGTTGGTCGATG 59.510 50.000 7.58 0.00 35.42 3.84
2090 2156 2.490115 GTGAGACTCTCTGTTGGTCGAT 59.510 50.000 7.58 0.00 35.42 3.59
2091 2157 1.880675 GTGAGACTCTCTGTTGGTCGA 59.119 52.381 7.58 0.00 35.42 4.20
2092 2158 1.068194 GGTGAGACTCTCTGTTGGTCG 60.068 57.143 7.58 0.00 35.42 4.79
2093 2159 2.243810 AGGTGAGACTCTCTGTTGGTC 58.756 52.381 7.58 0.00 0.00 4.02
2094 2160 2.390225 AGGTGAGACTCTCTGTTGGT 57.610 50.000 7.58 0.00 0.00 3.67
2095 2161 4.282195 AGTTAAGGTGAGACTCTCTGTTGG 59.718 45.833 7.58 0.00 0.00 3.77
2096 2162 5.226396 CAGTTAAGGTGAGACTCTCTGTTG 58.774 45.833 7.58 0.00 0.00 3.33
2097 2163 4.282195 CCAGTTAAGGTGAGACTCTCTGTT 59.718 45.833 7.58 1.74 0.00 3.16
2098 2164 3.829601 CCAGTTAAGGTGAGACTCTCTGT 59.170 47.826 7.58 0.00 0.00 3.41
2099 2165 3.829601 ACCAGTTAAGGTGAGACTCTCTG 59.170 47.826 7.58 2.00 41.30 3.35
2100 2166 4.083565 GACCAGTTAAGGTGAGACTCTCT 58.916 47.826 7.58 0.00 43.38 3.10
2101 2167 3.193903 GGACCAGTTAAGGTGAGACTCTC 59.806 52.174 3.68 0.00 43.38 3.20
2102 2168 3.166679 GGACCAGTTAAGGTGAGACTCT 58.833 50.000 3.68 0.00 43.38 3.24
2103 2169 2.897969 TGGACCAGTTAAGGTGAGACTC 59.102 50.000 0.00 0.00 43.38 3.36
2104 2170 2.900546 CTGGACCAGTTAAGGTGAGACT 59.099 50.000 13.84 0.00 43.38 3.24
2105 2171 2.613223 GCTGGACCAGTTAAGGTGAGAC 60.613 54.545 22.58 0.00 43.38 3.36
2106 2172 1.623811 GCTGGACCAGTTAAGGTGAGA 59.376 52.381 22.58 0.00 43.38 3.27
2107 2173 1.625818 AGCTGGACCAGTTAAGGTGAG 59.374 52.381 22.58 0.00 43.38 3.51
2108 2174 1.729586 AGCTGGACCAGTTAAGGTGA 58.270 50.000 22.58 0.00 43.38 4.02
2109 2175 2.354805 GGTAGCTGGACCAGTTAAGGTG 60.355 54.545 22.58 0.00 43.38 4.00
2110 2176 1.907255 GGTAGCTGGACCAGTTAAGGT 59.093 52.381 22.58 5.51 46.82 3.50
2111 2177 2.188817 AGGTAGCTGGACCAGTTAAGG 58.811 52.381 22.58 0.00 42.47 2.69
2112 2178 3.260884 TGAAGGTAGCTGGACCAGTTAAG 59.739 47.826 22.58 0.00 42.47 1.85
2113 2179 3.244582 TGAAGGTAGCTGGACCAGTTAA 58.755 45.455 22.58 5.95 42.47 2.01
2114 2180 2.897350 TGAAGGTAGCTGGACCAGTTA 58.103 47.619 22.58 18.10 42.47 2.24
2115 2181 1.729586 TGAAGGTAGCTGGACCAGTT 58.270 50.000 22.58 19.21 42.47 3.16
2116 2182 1.625818 CTTGAAGGTAGCTGGACCAGT 59.374 52.381 22.58 11.85 42.47 4.00
2117 2183 1.625818 ACTTGAAGGTAGCTGGACCAG 59.374 52.381 17.83 17.83 42.47 4.00
2118 2184 1.729586 ACTTGAAGGTAGCTGGACCA 58.270 50.000 8.39 0.00 42.47 4.02
2119 2185 2.701107 GAACTTGAAGGTAGCTGGACC 58.299 52.381 0.00 0.00 40.08 4.46
2120 2186 2.338500 CGAACTTGAAGGTAGCTGGAC 58.662 52.381 0.00 0.00 0.00 4.02
2121 2187 1.275291 CCGAACTTGAAGGTAGCTGGA 59.725 52.381 0.00 0.00 0.00 3.86
2122 2188 1.726853 CCGAACTTGAAGGTAGCTGG 58.273 55.000 0.00 0.00 0.00 4.85
2123 2189 1.079503 GCCGAACTTGAAGGTAGCTG 58.920 55.000 0.00 0.00 0.00 4.24
2124 2190 0.036294 GGCCGAACTTGAAGGTAGCT 60.036 55.000 4.94 0.00 0.00 3.32
2125 2191 1.359459 CGGCCGAACTTGAAGGTAGC 61.359 60.000 24.07 0.00 0.00 3.58
2126 2192 0.245539 TCGGCCGAACTTGAAGGTAG 59.754 55.000 28.99 0.00 0.00 3.18
2127 2193 0.899720 ATCGGCCGAACTTGAAGGTA 59.100 50.000 34.66 4.17 0.00 3.08
2128 2194 0.036306 AATCGGCCGAACTTGAAGGT 59.964 50.000 34.66 9.49 0.00 3.50
2129 2195 1.933853 CTAATCGGCCGAACTTGAAGG 59.066 52.381 34.66 12.31 0.00 3.46
2130 2196 1.327764 GCTAATCGGCCGAACTTGAAG 59.672 52.381 34.66 21.77 0.00 3.02
2131 2197 1.066430 AGCTAATCGGCCGAACTTGAA 60.066 47.619 34.66 7.59 0.00 2.69
2132 2198 0.535335 AGCTAATCGGCCGAACTTGA 59.465 50.000 34.66 14.38 0.00 3.02
2133 2199 1.327764 GAAGCTAATCGGCCGAACTTG 59.672 52.381 34.66 22.70 0.00 3.16
2134 2200 1.653151 GAAGCTAATCGGCCGAACTT 58.347 50.000 34.66 29.43 0.00 2.66
2135 2201 0.527817 CGAAGCTAATCGGCCGAACT 60.528 55.000 34.66 24.23 39.12 3.01
2136 2202 0.804933 ACGAAGCTAATCGGCCGAAC 60.805 55.000 34.66 21.29 46.82 3.95
2137 2203 0.740149 TACGAAGCTAATCGGCCGAA 59.260 50.000 34.66 16.59 46.82 4.30
2138 2204 0.029834 GTACGAAGCTAATCGGCCGA 59.970 55.000 33.12 33.12 46.82 5.54
2139 2205 0.938168 GGTACGAAGCTAATCGGCCG 60.938 60.000 22.12 22.12 46.82 6.13
2140 2206 0.388294 AGGTACGAAGCTAATCGGCC 59.612 55.000 12.18 12.51 46.82 6.13
2141 2207 2.220479 AAGGTACGAAGCTAATCGGC 57.780 50.000 12.18 4.79 46.82 5.54
2142 2208 6.257193 ACAAAATAAGGTACGAAGCTAATCGG 59.743 38.462 12.18 0.00 46.82 4.18
2147 2213 9.880157 AGAAATACAAAATAAGGTACGAAGCTA 57.120 29.630 0.00 0.00 31.75 3.32
2148 2214 8.788325 AGAAATACAAAATAAGGTACGAAGCT 57.212 30.769 0.00 0.00 34.01 3.74
2192 2258 9.042008 GCGAAAGGTGAATAAATGTCTCTATAA 57.958 33.333 0.00 0.00 0.00 0.98
2193 2259 8.201464 TGCGAAAGGTGAATAAATGTCTCTATA 58.799 33.333 0.00 0.00 0.00 1.31
2194 2260 7.047891 TGCGAAAGGTGAATAAATGTCTCTAT 58.952 34.615 0.00 0.00 0.00 1.98
2195 2261 6.403049 TGCGAAAGGTGAATAAATGTCTCTA 58.597 36.000 0.00 0.00 0.00 2.43
2196 2262 5.245531 TGCGAAAGGTGAATAAATGTCTCT 58.754 37.500 0.00 0.00 0.00 3.10
2197 2263 5.545658 TGCGAAAGGTGAATAAATGTCTC 57.454 39.130 0.00 0.00 0.00 3.36
2198 2264 5.957842 TTGCGAAAGGTGAATAAATGTCT 57.042 34.783 0.00 0.00 0.00 3.41
2199 2265 6.321717 TGATTGCGAAAGGTGAATAAATGTC 58.678 36.000 0.00 0.00 0.00 3.06
2200 2266 6.266168 TGATTGCGAAAGGTGAATAAATGT 57.734 33.333 0.00 0.00 0.00 2.71
2201 2267 7.760131 ATTGATTGCGAAAGGTGAATAAATG 57.240 32.000 0.00 0.00 0.00 2.32
2202 2268 8.776376 AAATTGATTGCGAAAGGTGAATAAAT 57.224 26.923 0.00 0.00 0.00 1.40
2203 2269 8.600449 AAAATTGATTGCGAAAGGTGAATAAA 57.400 26.923 0.00 0.00 0.00 1.40
2204 2270 8.600449 AAAAATTGATTGCGAAAGGTGAATAA 57.400 26.923 0.00 0.00 0.00 1.40
2263 2329 9.593134 TGCACTGTATTTTTAAAAACTGTTCAT 57.407 25.926 15.35 1.17 0.00 2.57
2264 2330 8.865001 GTGCACTGTATTTTTAAAAACTGTTCA 58.135 29.630 15.35 11.74 0.00 3.18
2265 2331 8.865001 TGTGCACTGTATTTTTAAAAACTGTTC 58.135 29.630 19.41 9.63 0.00 3.18
2266 2332 8.764524 TGTGCACTGTATTTTTAAAAACTGTT 57.235 26.923 19.41 2.91 0.00 3.16
2267 2333 8.940768 ATGTGCACTGTATTTTTAAAAACTGT 57.059 26.923 19.41 11.43 0.00 3.55
2281 2347 9.884636 AGTGTCTATTTTATAATGTGCACTGTA 57.115 29.630 19.41 10.32 33.04 2.74
2282 2348 8.668353 CAGTGTCTATTTTATAATGTGCACTGT 58.332 33.333 19.41 8.25 42.66 3.55
2283 2349 8.882736 TCAGTGTCTATTTTATAATGTGCACTG 58.117 33.333 19.41 19.60 46.40 3.66
2284 2350 9.102757 CTCAGTGTCTATTTTATAATGTGCACT 57.897 33.333 19.41 0.28 34.33 4.40
2285 2351 8.338259 CCTCAGTGTCTATTTTATAATGTGCAC 58.662 37.037 10.75 10.75 0.00 4.57
2286 2352 8.264347 TCCTCAGTGTCTATTTTATAATGTGCA 58.736 33.333 0.00 0.00 0.00 4.57
2287 2353 8.662781 TCCTCAGTGTCTATTTTATAATGTGC 57.337 34.615 0.00 0.00 0.00 4.57
2299 2365 9.256228 TGTAGTAAAAGAATCCTCAGTGTCTAT 57.744 33.333 0.00 0.00 0.00 1.98
2300 2366 8.521176 GTGTAGTAAAAGAATCCTCAGTGTCTA 58.479 37.037 0.00 0.00 0.00 2.59
2301 2367 7.379750 GTGTAGTAAAAGAATCCTCAGTGTCT 58.620 38.462 0.00 0.00 0.00 3.41
2302 2368 6.308282 CGTGTAGTAAAAGAATCCTCAGTGTC 59.692 42.308 0.00 0.00 0.00 3.67
2303 2369 6.015688 TCGTGTAGTAAAAGAATCCTCAGTGT 60.016 38.462 0.00 0.00 0.00 3.55
2304 2370 6.387465 TCGTGTAGTAAAAGAATCCTCAGTG 58.613 40.000 0.00 0.00 0.00 3.66
2305 2371 6.585695 TCGTGTAGTAAAAGAATCCTCAGT 57.414 37.500 0.00 0.00 0.00 3.41
2306 2372 7.258441 TCATCGTGTAGTAAAAGAATCCTCAG 58.742 38.462 0.00 0.00 0.00 3.35
2307 2373 7.165460 TCATCGTGTAGTAAAAGAATCCTCA 57.835 36.000 0.00 0.00 0.00 3.86
2308 2374 8.649973 ATTCATCGTGTAGTAAAAGAATCCTC 57.350 34.615 0.00 0.00 0.00 3.71
2315 2381 9.632969 CGGAAAATATTCATCGTGTAGTAAAAG 57.367 33.333 0.00 0.00 37.29 2.27
2316 2382 9.368674 TCGGAAAATATTCATCGTGTAGTAAAA 57.631 29.630 0.00 0.00 37.29 1.52
2317 2383 8.929827 TCGGAAAATATTCATCGTGTAGTAAA 57.070 30.769 0.00 0.00 37.29 2.01
2319 2385 9.616634 GTATCGGAAAATATTCATCGTGTAGTA 57.383 33.333 0.00 0.00 37.29 1.82
2320 2386 8.139350 TGTATCGGAAAATATTCATCGTGTAGT 58.861 33.333 0.00 0.00 37.29 2.73
2321 2387 8.515473 TGTATCGGAAAATATTCATCGTGTAG 57.485 34.615 0.00 0.00 37.29 2.74
2322 2388 8.874744 TTGTATCGGAAAATATTCATCGTGTA 57.125 30.769 0.00 0.00 37.29 2.90
2323 2389 7.709182 TCTTGTATCGGAAAATATTCATCGTGT 59.291 33.333 0.00 0.00 37.29 4.49
2324 2390 8.072238 TCTTGTATCGGAAAATATTCATCGTG 57.928 34.615 0.00 0.00 37.29 4.35
2325 2391 8.712363 CATCTTGTATCGGAAAATATTCATCGT 58.288 33.333 0.00 0.00 37.29 3.73
2326 2392 7.689812 GCATCTTGTATCGGAAAATATTCATCG 59.310 37.037 0.00 0.00 37.29 3.84
2327 2393 7.689812 CGCATCTTGTATCGGAAAATATTCATC 59.310 37.037 0.00 0.00 37.29 2.92
2328 2394 7.521529 CGCATCTTGTATCGGAAAATATTCAT 58.478 34.615 0.00 0.00 37.29 2.57
2329 2395 6.565811 GCGCATCTTGTATCGGAAAATATTCA 60.566 38.462 0.30 0.00 37.29 2.57
2330 2396 5.790495 GCGCATCTTGTATCGGAAAATATTC 59.210 40.000 0.30 0.00 34.66 1.75
2331 2397 5.238432 TGCGCATCTTGTATCGGAAAATATT 59.762 36.000 5.66 0.00 0.00 1.28
2332 2398 4.754618 TGCGCATCTTGTATCGGAAAATAT 59.245 37.500 5.66 0.00 0.00 1.28
2333 2399 4.123506 TGCGCATCTTGTATCGGAAAATA 58.876 39.130 5.66 0.00 0.00 1.40
2334 2400 2.942376 TGCGCATCTTGTATCGGAAAAT 59.058 40.909 5.66 0.00 0.00 1.82
2335 2401 2.351455 TGCGCATCTTGTATCGGAAAA 58.649 42.857 5.66 0.00 0.00 2.29
2336 2402 2.017138 TGCGCATCTTGTATCGGAAA 57.983 45.000 5.66 0.00 0.00 3.13
2337 2403 2.135139 GATGCGCATCTTGTATCGGAA 58.865 47.619 36.92 0.00 35.04 4.30
2338 2404 1.068434 TGATGCGCATCTTGTATCGGA 59.932 47.619 40.90 21.56 38.60 4.55
2339 2405 1.501169 TGATGCGCATCTTGTATCGG 58.499 50.000 40.90 0.00 38.60 4.18
2340 2406 3.590720 TTTGATGCGCATCTTGTATCG 57.409 42.857 40.90 0.00 38.60 2.92
2341 2407 6.817270 AATTTTTGATGCGCATCTTGTATC 57.183 33.333 40.90 22.37 38.60 2.24
2342 2408 7.758980 TGTAAATTTTTGATGCGCATCTTGTAT 59.241 29.630 40.90 28.01 38.60 2.29
2343 2409 7.087007 TGTAAATTTTTGATGCGCATCTTGTA 58.913 30.769 40.90 27.26 38.60 2.41
2344 2410 5.925397 TGTAAATTTTTGATGCGCATCTTGT 59.075 32.000 40.90 23.99 38.60 3.16
2345 2411 6.392353 TGTAAATTTTTGATGCGCATCTTG 57.608 33.333 40.90 0.00 38.60 3.02
2346 2412 6.812656 TCATGTAAATTTTTGATGCGCATCTT 59.187 30.769 40.90 30.00 38.60 2.40
2347 2413 6.331845 TCATGTAAATTTTTGATGCGCATCT 58.668 32.000 40.90 26.15 38.60 2.90
2348 2414 6.572153 TCATGTAAATTTTTGATGCGCATC 57.428 33.333 37.43 37.43 38.29 3.91
2349 2415 8.542132 GTTATCATGTAAATTTTTGATGCGCAT 58.458 29.630 25.66 25.66 31.59 4.73
2350 2416 7.543520 TGTTATCATGTAAATTTTTGATGCGCA 59.456 29.630 14.96 14.96 31.59 6.09
2351 2417 7.893824 TGTTATCATGTAAATTTTTGATGCGC 58.106 30.769 0.00 0.00 31.59 6.09
2379 2445 9.526713 TGAAAAATGTGCAATGCGTATTTATAT 57.473 25.926 16.08 8.69 30.63 0.86
2380 2446 8.917415 TGAAAAATGTGCAATGCGTATTTATA 57.083 26.923 16.08 6.73 30.63 0.98
2381 2447 7.824704 TGAAAAATGTGCAATGCGTATTTAT 57.175 28.000 16.08 7.45 30.63 1.40
2382 2448 7.643528 TTGAAAAATGTGCAATGCGTATTTA 57.356 28.000 16.08 3.15 30.63 1.40
2383 2449 6.536731 TTGAAAAATGTGCAATGCGTATTT 57.463 29.167 11.83 11.83 31.55 1.40
2384 2450 6.536731 TTTGAAAAATGTGCAATGCGTATT 57.463 29.167 0.00 0.66 0.00 1.89
2385 2451 6.724694 ATTTGAAAAATGTGCAATGCGTAT 57.275 29.167 0.00 0.00 0.00 3.06
2386 2452 7.543520 TGATATTTGAAAAATGTGCAATGCGTA 59.456 29.630 0.00 0.00 0.00 4.42
2387 2453 6.368243 TGATATTTGAAAAATGTGCAATGCGT 59.632 30.769 0.00 0.00 0.00 5.24
2388 2454 6.763101 TGATATTTGAAAAATGTGCAATGCG 58.237 32.000 0.00 0.00 0.00 4.73
2389 2455 7.853929 GGATGATATTTGAAAAATGTGCAATGC 59.146 33.333 0.00 0.00 0.00 3.56
2390 2456 9.104965 AGGATGATATTTGAAAAATGTGCAATG 57.895 29.630 0.00 0.00 0.00 2.82
2391 2457 9.104965 CAGGATGATATTTGAAAAATGTGCAAT 57.895 29.630 0.00 0.00 39.69 3.56
2392 2458 7.064847 GCAGGATGATATTTGAAAAATGTGCAA 59.935 33.333 0.00 0.00 39.69 4.08
2393 2459 6.535865 GCAGGATGATATTTGAAAAATGTGCA 59.464 34.615 0.00 0.00 39.69 4.57
2394 2460 6.535865 TGCAGGATGATATTTGAAAAATGTGC 59.464 34.615 0.00 0.00 39.69 4.57
2395 2461 8.657074 ATGCAGGATGATATTTGAAAAATGTG 57.343 30.769 0.00 0.00 39.69 3.21
2396 2462 9.675464 AAATGCAGGATGATATTTGAAAAATGT 57.325 25.926 0.00 0.00 39.69 2.71
2428 2494 9.316730 TGTCTTACGACTTTTAATTGTGTACTT 57.683 29.630 0.68 0.00 40.86 2.24
2429 2495 8.876275 TGTCTTACGACTTTTAATTGTGTACT 57.124 30.769 0.68 0.00 40.86 2.73
2430 2496 9.525007 CATGTCTTACGACTTTTAATTGTGTAC 57.475 33.333 0.68 0.00 40.86 2.90
2431 2497 9.478768 TCATGTCTTACGACTTTTAATTGTGTA 57.521 29.630 0.68 0.00 40.86 2.90
2432 2498 8.280497 GTCATGTCTTACGACTTTTAATTGTGT 58.720 33.333 0.68 0.00 40.86 3.72
2433 2499 8.279800 TGTCATGTCTTACGACTTTTAATTGTG 58.720 33.333 0.68 0.00 40.86 3.33
2434 2500 8.373048 TGTCATGTCTTACGACTTTTAATTGT 57.627 30.769 0.68 0.00 40.86 2.71
2435 2501 9.825972 ATTGTCATGTCTTACGACTTTTAATTG 57.174 29.630 0.68 0.00 40.86 2.32
2437 2503 9.214957 TGATTGTCATGTCTTACGACTTTTAAT 57.785 29.630 0.68 0.00 40.86 1.40
2438 2504 8.596271 TGATTGTCATGTCTTACGACTTTTAA 57.404 30.769 0.68 0.00 40.86 1.52
2439 2505 8.596271 TTGATTGTCATGTCTTACGACTTTTA 57.404 30.769 0.68 0.00 40.86 1.52
2440 2506 7.490962 TTGATTGTCATGTCTTACGACTTTT 57.509 32.000 0.68 0.00 40.86 2.27
2441 2507 7.672983 ATTGATTGTCATGTCTTACGACTTT 57.327 32.000 0.68 0.00 40.86 2.66
2442 2508 7.672983 AATTGATTGTCATGTCTTACGACTT 57.327 32.000 0.68 0.00 40.86 3.01
2443 2509 7.672983 AAATTGATTGTCATGTCTTACGACT 57.327 32.000 0.68 0.00 40.86 4.18
2444 2510 8.728088 AAAAATTGATTGTCATGTCTTACGAC 57.272 30.769 0.00 0.00 40.64 4.34
2495 2561 9.967451 TGGTGTATCAAAAATATTCTTCAGGTA 57.033 29.630 0.00 0.00 0.00 3.08
2496 2562 8.877864 TGGTGTATCAAAAATATTCTTCAGGT 57.122 30.769 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.