Multiple sequence alignment - TraesCS5B01G566700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G566700 chr5B 100.000 3867 0 0 1 3867 710787786 710783920 0.000000e+00 7142.0
1 TraesCS5B01G566700 chr5B 89.362 94 6 3 660 752 78228728 78228818 8.780000e-22 115.0
2 TraesCS5B01G566700 chr5D 84.322 3017 182 121 922 3830 560433585 560430752 0.000000e+00 2682.0
3 TraesCS5B01G566700 chr5D 91.489 188 15 1 22 208 560434418 560434231 1.380000e-64 257.0
4 TraesCS5B01G566700 chr5D 87.500 192 20 2 229 416 560434241 560434050 6.500000e-53 219.0
5 TraesCS5B01G566700 chr5D 93.220 59 4 0 592 650 421137854 421137912 1.910000e-13 87.9
6 TraesCS5B01G566700 chr4A 91.741 1235 62 18 962 2177 603982102 603980889 0.000000e+00 1679.0
7 TraesCS5B01G566700 chr4A 78.414 908 72 45 2613 3477 603980424 603979598 9.720000e-131 477.0
8 TraesCS5B01G566700 chr4A 85.044 341 15 17 2251 2565 603980859 603980529 8.060000e-82 315.0
9 TraesCS5B01G566700 chr4A 86.294 197 18 8 3625 3819 603979508 603979319 5.060000e-49 206.0
10 TraesCS5B01G566700 chr4A 93.103 58 4 0 592 649 298243813 298243870 6.880000e-13 86.1
11 TraesCS5B01G566700 chr4A 87.013 77 8 1 229 303 603982400 603982324 6.880000e-13 86.1
12 TraesCS5B01G566700 chr2A 78.783 641 115 19 1176 1807 4293761 4293133 1.000000e-110 411.0
13 TraesCS5B01G566700 chr2A 87.129 101 8 4 659 757 57440817 57440914 4.080000e-20 110.0
14 TraesCS5B01G566700 chr2A 89.474 57 6 0 594 650 761168193 761168249 5.360000e-09 73.1
15 TraesCS5B01G566700 chr2A 90.476 42 2 2 518 559 1111931 1111970 2.000000e-03 54.7
16 TraesCS5B01G566700 chr6A 91.111 90 5 3 663 752 66426430 66426516 6.790000e-23 119.0
17 TraesCS5B01G566700 chr7B 87.368 95 9 3 658 752 650608935 650609026 5.280000e-19 106.0
18 TraesCS5B01G566700 chr7B 86.000 100 10 4 658 756 708478611 708478515 1.900000e-18 104.0
19 TraesCS5B01G566700 chr7B 92.308 39 2 1 518 556 554516005 554515968 2.000000e-03 54.7
20 TraesCS5B01G566700 chr7B 90.476 42 2 2 518 559 712625412 712625373 2.000000e-03 54.7
21 TraesCS5B01G566700 chr7A 87.368 95 9 3 658 752 524701413 524701322 5.280000e-19 106.0
22 TraesCS5B01G566700 chr7A 90.476 42 2 2 518 559 714819272 714819311 2.000000e-03 54.7
23 TraesCS5B01G566700 chr5A 87.368 95 9 3 658 752 439554039 439553948 5.280000e-19 106.0
24 TraesCS5B01G566700 chr5A 87.368 95 9 3 658 752 680074835 680074926 5.280000e-19 106.0
25 TraesCS5B01G566700 chr1D 87.368 95 8 4 659 752 36361345 36361254 5.280000e-19 106.0
26 TraesCS5B01G566700 chr1D 94.915 59 3 0 592 650 112766156 112766098 4.110000e-15 93.5
27 TraesCS5B01G566700 chr6D 97.674 43 1 0 593 635 260058462 260058420 1.490000e-09 75.0
28 TraesCS5B01G566700 chr6D 88.136 59 7 0 592 650 31087618 31087676 1.930000e-08 71.3
29 TraesCS5B01G566700 chr1B 97.619 42 1 0 594 635 242398434 242398475 5.360000e-09 73.1
30 TraesCS5B01G566700 chr4B 89.286 56 6 0 592 647 116221634 116221579 1.930000e-08 71.3
31 TraesCS5B01G566700 chr4B 92.308 39 2 1 518 556 317197865 317197828 2.000000e-03 54.7
32 TraesCS5B01G566700 chr3B 87.097 62 5 3 592 650 650646594 650646533 2.490000e-07 67.6
33 TraesCS5B01G566700 chr3B 90.476 42 2 2 518 559 43528779 43528740 2.000000e-03 54.7
34 TraesCS5B01G566700 chr4D 97.143 35 1 0 324 358 507718550 507718516 4.170000e-05 60.2
35 TraesCS5B01G566700 chr3D 90.476 42 2 2 518 559 577375998 577376037 2.000000e-03 54.7
36 TraesCS5B01G566700 chr3A 90.476 42 2 2 518 559 48641469 48641430 2.000000e-03 54.7
37 TraesCS5B01G566700 chr1A 90.476 42 2 2 518 559 507225881 507225842 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G566700 chr5B 710783920 710787786 3866 True 7142.000000 7142 100.000000 1 3867 1 chr5B.!!$R1 3866
1 TraesCS5B01G566700 chr5D 560430752 560434418 3666 True 1052.666667 2682 87.770333 22 3830 3 chr5D.!!$R1 3808
2 TraesCS5B01G566700 chr4A 603979319 603982400 3081 True 552.620000 1679 85.701200 229 3819 5 chr4A.!!$R1 3590
3 TraesCS5B01G566700 chr2A 4293133 4293761 628 True 411.000000 411 78.783000 1176 1807 1 chr2A.!!$R1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 897 0.106519 CCGCCCCTCCATTCTTGAAT 60.107 55.0 0.0 0.0 0.0 2.57 F
1071 1208 0.030297 AGCTCCCATCACTCCATCCT 60.030 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2801 3083 0.107993 ACCATAGAGGACGACGACGA 60.108 55.0 15.32 0.0 40.2 4.20 R
2910 3192 0.106335 CGGCTTCAGATCCATGCTCT 59.894 55.0 0.00 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.565905 GCCTCAGATCACTTGTTTTGG 57.434 47.619 0.00 0.00 0.00 3.28
65 66 5.717078 AAGTTGACGAGGTATGTTCACTA 57.283 39.130 0.00 0.00 0.00 2.74
83 84 7.889073 TGTTCACTATCACCTCCTATATACCTC 59.111 40.741 0.00 0.00 0.00 3.85
85 86 6.442885 TCACTATCACCTCCTATATACCTCGA 59.557 42.308 0.00 0.00 0.00 4.04
95 96 6.590068 TCCTATATACCTCGAGGCATACTAC 58.410 44.000 31.56 0.00 39.32 2.73
99 100 1.409427 ACCTCGAGGCATACTACAAGC 59.591 52.381 31.56 0.00 39.32 4.01
106 107 1.212616 GCATACTACAAGCGCTCCAG 58.787 55.000 12.06 10.97 0.00 3.86
147 148 3.758931 GCGGATGGCCACCCAAAC 61.759 66.667 19.03 0.00 46.14 2.93
180 182 4.342665 GTGGAAGGAGTTAGATCTACCTGG 59.657 50.000 4.28 0.00 0.00 4.45
181 183 4.232122 TGGAAGGAGTTAGATCTACCTGGA 59.768 45.833 4.28 0.00 0.00 3.86
186 188 4.276431 GGAGTTAGATCTACCTGGAAGTCG 59.724 50.000 4.28 0.00 0.00 4.18
202 204 6.437928 TGGAAGTCGATTTGAAATTCAAGTG 58.562 36.000 8.46 3.50 37.70 3.16
203 205 5.858581 GGAAGTCGATTTGAAATTCAAGTGG 59.141 40.000 8.46 7.58 37.70 4.00
204 206 6.293955 GGAAGTCGATTTGAAATTCAAGTGGA 60.294 38.462 8.46 9.75 37.70 4.02
205 207 6.633500 AGTCGATTTGAAATTCAAGTGGAA 57.367 33.333 15.05 0.00 37.70 3.53
206 208 6.672147 AGTCGATTTGAAATTCAAGTGGAAG 58.328 36.000 15.05 4.25 37.70 3.46
207 209 5.858581 GTCGATTTGAAATTCAAGTGGAAGG 59.141 40.000 15.05 1.69 37.70 3.46
208 210 5.534654 TCGATTTGAAATTCAAGTGGAAGGT 59.465 36.000 12.04 0.00 37.70 3.50
209 211 6.040391 TCGATTTGAAATTCAAGTGGAAGGTT 59.960 34.615 12.04 0.00 37.70 3.50
210 212 6.701400 CGATTTGAAATTCAAGTGGAAGGTTT 59.299 34.615 8.46 0.00 37.70 3.27
211 213 7.224557 CGATTTGAAATTCAAGTGGAAGGTTTT 59.775 33.333 8.46 0.00 37.70 2.43
212 214 8.806429 ATTTGAAATTCAAGTGGAAGGTTTTT 57.194 26.923 8.51 0.00 37.70 1.94
284 288 5.772825 TTTGAATCAAGTGGAAGGAGTTG 57.227 39.130 0.00 0.00 0.00 3.16
289 293 1.815003 CAAGTGGAAGGAGTTGGATGC 59.185 52.381 0.00 0.00 0.00 3.91
294 298 1.457346 GAAGGAGTTGGATGCACCTG 58.543 55.000 0.00 0.00 39.86 4.00
304 308 2.286872 GGATGCACCTGAGAGTCAATG 58.713 52.381 0.00 0.00 35.41 2.82
312 316 5.668471 CACCTGAGAGTCAATGATACACAT 58.332 41.667 0.00 0.00 41.45 3.21
314 318 5.423290 ACCTGAGAGTCAATGATACACATGA 59.577 40.000 0.00 0.00 39.39 3.07
317 321 7.357429 TGAGAGTCAATGATACACATGATCT 57.643 36.000 0.00 0.00 39.39 2.75
318 322 8.469309 TGAGAGTCAATGATACACATGATCTA 57.531 34.615 0.00 0.00 39.39 1.98
347 351 4.830600 TCAACCAACTATCCCAAAAAGACC 59.169 41.667 0.00 0.00 0.00 3.85
355 359 7.138054 ACTATCCCAAAAAGACCGATCTAAT 57.862 36.000 0.00 0.00 33.57 1.73
416 422 6.998258 AAAGAATTTTGCAAGACATCGAAG 57.002 33.333 0.00 0.00 31.62 3.79
417 423 5.947228 AGAATTTTGCAAGACATCGAAGA 57.053 34.783 0.00 0.00 45.75 2.87
418 424 6.506500 AGAATTTTGCAAGACATCGAAGAT 57.493 33.333 0.00 0.00 45.12 2.40
419 425 6.320171 AGAATTTTGCAAGACATCGAAGATG 58.680 36.000 8.33 8.33 45.12 2.90
420 426 5.633830 ATTTTGCAAGACATCGAAGATGT 57.366 34.783 14.63 14.63 45.12 3.06
421 427 4.408993 TTTGCAAGACATCGAAGATGTG 57.591 40.909 18.89 7.41 45.12 3.21
422 428 1.733912 TGCAAGACATCGAAGATGTGC 59.266 47.619 18.89 15.88 45.12 4.57
423 429 2.005451 GCAAGACATCGAAGATGTGCT 58.995 47.619 18.89 12.74 45.12 4.40
424 430 2.417933 GCAAGACATCGAAGATGTGCTT 59.582 45.455 18.89 16.75 45.12 3.91
425 431 3.618594 GCAAGACATCGAAGATGTGCTTA 59.381 43.478 18.89 0.00 45.12 3.09
426 432 4.272018 GCAAGACATCGAAGATGTGCTTAT 59.728 41.667 18.89 0.00 45.12 1.73
427 433 5.463392 GCAAGACATCGAAGATGTGCTTATA 59.537 40.000 18.89 0.00 45.12 0.98
483 489 8.535690 AATTAATTTAGCATCGGTCTACTAGC 57.464 34.615 0.00 0.00 0.00 3.42
484 490 5.531122 AATTTAGCATCGGTCTACTAGCA 57.469 39.130 0.00 0.00 0.00 3.49
485 491 3.984508 TTAGCATCGGTCTACTAGCAC 57.015 47.619 0.00 0.00 0.00 4.40
487 515 3.210232 AGCATCGGTCTACTAGCACTA 57.790 47.619 0.00 0.00 0.00 2.74
553 581 8.217131 TCCGTTCCTAAATATAAGCCTTTTTC 57.783 34.615 0.00 0.00 0.00 2.29
559 591 9.490379 TCCTAAATATAAGCCTTTTTCGAGATC 57.510 33.333 0.00 0.00 0.00 2.75
563 595 8.964476 AATATAAGCCTTTTTCGAGATCTCAA 57.036 30.769 22.31 12.47 0.00 3.02
564 596 9.566432 AATATAAGCCTTTTTCGAGATCTCAAT 57.434 29.630 22.31 2.82 0.00 2.57
567 599 7.872113 AAGCCTTTTTCGAGATCTCAATATT 57.128 32.000 22.31 2.04 0.00 1.28
571 603 7.201644 GCCTTTTTCGAGATCTCAATATTGACA 60.202 37.037 22.31 4.89 32.90 3.58
576 608 9.816354 TTTCGAGATCTCAATATTGACAACATA 57.184 29.630 22.31 0.00 32.90 2.29
577 609 9.987272 TTCGAGATCTCAATATTGACAACATAT 57.013 29.630 22.31 2.13 32.90 1.78
578 610 9.415544 TCGAGATCTCAATATTGACAACATATG 57.584 33.333 22.31 0.00 32.90 1.78
591 623 7.776933 TGACAACATATGAAGTAGAATGAGC 57.223 36.000 10.38 0.00 0.00 4.26
604 656 9.710979 GAAGTAGAATGAGCGTCTATATACATC 57.289 37.037 0.00 0.00 30.52 3.06
605 657 8.215926 AGTAGAATGAGCGTCTATATACATCC 57.784 38.462 0.00 0.00 30.52 3.51
610 662 9.404348 GAATGAGCGTCTATATACATCCATATG 57.596 37.037 0.00 0.00 39.17 1.78
656 711 8.473358 AAAAGGTTTTATATTTAGATCCGGGG 57.527 34.615 0.00 0.00 0.00 5.73
657 712 5.567430 AGGTTTTATATTTAGATCCGGGGC 58.433 41.667 0.00 0.00 0.00 5.80
658 713 4.703575 GGTTTTATATTTAGATCCGGGGCC 59.296 45.833 0.00 0.00 0.00 5.80
659 714 4.579647 TTTATATTTAGATCCGGGGCCC 57.420 45.455 15.76 15.76 0.00 5.80
660 715 2.361085 ATATTTAGATCCGGGGCCCT 57.639 50.000 24.38 0.00 0.00 5.19
661 716 2.127651 TATTTAGATCCGGGGCCCTT 57.872 50.000 24.38 4.93 0.00 3.95
662 717 0.771755 ATTTAGATCCGGGGCCCTTC 59.228 55.000 24.38 14.58 0.00 3.46
663 718 1.692173 TTTAGATCCGGGGCCCTTCG 61.692 60.000 24.38 18.11 0.00 3.79
664 719 2.884179 TTAGATCCGGGGCCCTTCGT 62.884 60.000 24.38 5.79 0.00 3.85
665 720 2.884179 TAGATCCGGGGCCCTTCGTT 62.884 60.000 24.38 7.29 0.00 3.85
678 733 6.060136 GGGCCCTTCGTTCTTAAATATAAGT 58.940 40.000 17.04 0.00 39.65 2.24
729 785 8.076178 ACTACATACAAAGCAAAATGAGTGAAC 58.924 33.333 0.00 0.00 0.00 3.18
752 808 9.283420 GAACCTACACTCTAAAATTACGTCTAC 57.717 37.037 0.00 0.00 0.00 2.59
792 882 7.563888 AAAGGTTTTATATTTAGAGACCGCC 57.436 36.000 0.00 0.00 0.00 6.13
793 883 5.618236 AGGTTTTATATTTAGAGACCGCCC 58.382 41.667 0.00 0.00 0.00 6.13
794 884 4.758674 GGTTTTATATTTAGAGACCGCCCC 59.241 45.833 0.00 0.00 0.00 5.80
795 885 5.455755 GGTTTTATATTTAGAGACCGCCCCT 60.456 44.000 0.00 0.00 0.00 4.79
796 886 5.479124 TTTATATTTAGAGACCGCCCCTC 57.521 43.478 0.00 0.00 0.00 4.30
797 887 1.713297 TATTTAGAGACCGCCCCTCC 58.287 55.000 0.00 0.00 0.00 4.30
798 888 0.326238 ATTTAGAGACCGCCCCTCCA 60.326 55.000 0.00 0.00 0.00 3.86
799 889 0.326238 TTTAGAGACCGCCCCTCCAT 60.326 55.000 0.00 0.00 0.00 3.41
800 890 0.326238 TTAGAGACCGCCCCTCCATT 60.326 55.000 0.00 0.00 0.00 3.16
801 891 0.759436 TAGAGACCGCCCCTCCATTC 60.759 60.000 0.00 0.00 0.00 2.67
802 892 2.041265 AGACCGCCCCTCCATTCT 59.959 61.111 0.00 0.00 0.00 2.40
803 893 1.616628 AGACCGCCCCTCCATTCTT 60.617 57.895 0.00 0.00 0.00 2.52
804 894 1.452108 GACCGCCCCTCCATTCTTG 60.452 63.158 0.00 0.00 0.00 3.02
805 895 1.910580 GACCGCCCCTCCATTCTTGA 61.911 60.000 0.00 0.00 0.00 3.02
806 896 1.302949 CCGCCCCTCCATTCTTGAA 59.697 57.895 0.00 0.00 0.00 2.69
807 897 0.106519 CCGCCCCTCCATTCTTGAAT 60.107 55.000 0.00 0.00 0.00 2.57
808 898 1.142870 CCGCCCCTCCATTCTTGAATA 59.857 52.381 0.00 0.00 0.00 1.75
809 899 2.222027 CGCCCCTCCATTCTTGAATAC 58.778 52.381 0.00 0.00 0.00 1.89
810 900 2.421388 CGCCCCTCCATTCTTGAATACA 60.421 50.000 0.00 0.00 0.00 2.29
811 901 3.748668 CGCCCCTCCATTCTTGAATACAT 60.749 47.826 0.00 0.00 0.00 2.29
812 902 3.571401 GCCCCTCCATTCTTGAATACATG 59.429 47.826 0.00 0.00 0.00 3.21
813 903 3.571401 CCCCTCCATTCTTGAATACATGC 59.429 47.826 0.00 0.00 0.00 4.06
814 904 4.467769 CCCTCCATTCTTGAATACATGCT 58.532 43.478 0.00 0.00 0.00 3.79
815 905 4.891756 CCCTCCATTCTTGAATACATGCTT 59.108 41.667 0.00 0.00 0.00 3.91
816 906 5.361857 CCCTCCATTCTTGAATACATGCTTT 59.638 40.000 0.00 0.00 0.00 3.51
817 907 6.460676 CCCTCCATTCTTGAATACATGCTTTC 60.461 42.308 0.00 0.00 0.00 2.62
818 908 6.320672 CCTCCATTCTTGAATACATGCTTTCT 59.679 38.462 9.02 0.00 0.00 2.52
819 909 7.147949 CCTCCATTCTTGAATACATGCTTTCTT 60.148 37.037 9.02 0.00 0.00 2.52
820 910 8.125978 TCCATTCTTGAATACATGCTTTCTTT 57.874 30.769 9.02 0.00 0.00 2.52
821 911 9.241919 TCCATTCTTGAATACATGCTTTCTTTA 57.758 29.630 9.02 0.00 0.00 1.85
834 924 9.638176 ACATGCTTTCTTTATAGAGATTCCAAT 57.362 29.630 0.00 0.00 0.00 3.16
837 927 9.261180 TGCTTTCTTTATAGAGATTCCAATACG 57.739 33.333 0.00 0.00 0.00 3.06
838 928 9.477484 GCTTTCTTTATAGAGATTCCAATACGA 57.523 33.333 0.00 0.00 0.00 3.43
857 947 5.840940 ACGAAGTACATACAGAGCAAAAC 57.159 39.130 0.00 0.00 41.94 2.43
858 948 4.384846 ACGAAGTACATACAGAGCAAAACG 59.615 41.667 0.00 0.00 41.94 3.60
859 949 4.619760 CGAAGTACATACAGAGCAAAACGA 59.380 41.667 0.00 0.00 0.00 3.85
860 950 5.288712 CGAAGTACATACAGAGCAAAACGAT 59.711 40.000 0.00 0.00 0.00 3.73
861 951 6.183360 CGAAGTACATACAGAGCAAAACGATT 60.183 38.462 0.00 0.00 0.00 3.34
862 952 7.008901 CGAAGTACATACAGAGCAAAACGATTA 59.991 37.037 0.00 0.00 0.00 1.75
863 953 8.718102 AAGTACATACAGAGCAAAACGATTAT 57.282 30.769 0.00 0.00 0.00 1.28
864 954 8.718102 AGTACATACAGAGCAAAACGATTATT 57.282 30.769 0.00 0.00 0.00 1.40
903 993 5.246429 AGGCTTATATTAGAAACGGAGGGAG 59.754 44.000 0.00 0.00 0.00 4.30
904 994 5.011840 GGCTTATATTAGAAACGGAGGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
905 995 6.210185 GGCTTATATTAGAAACGGAGGGAGTA 59.790 42.308 0.00 0.00 0.00 2.59
906 996 7.093421 GGCTTATATTAGAAACGGAGGGAGTAT 60.093 40.741 0.00 0.00 0.00 2.12
920 1016 5.046231 GGAGGGAGTATGGACCTAAATGATC 60.046 48.000 0.00 0.00 34.02 2.92
928 1032 4.703897 TGGACCTAAATGATCAATCGACC 58.296 43.478 0.00 0.00 0.00 4.79
956 1064 0.833949 TGGTATGGCGCTAATGTCCA 59.166 50.000 7.64 11.77 0.00 4.02
1028 1165 1.202770 CCCTCACCGGCCCTATTTAAG 60.203 57.143 0.00 0.00 0.00 1.85
1071 1208 0.030297 AGCTCCCATCACTCCATCCT 60.030 55.000 0.00 0.00 0.00 3.24
1093 1235 2.687935 CTCTTCCTCTTCCTCTTCTCCG 59.312 54.545 0.00 0.00 0.00 4.63
1096 1253 0.736053 CCTCTTCCTCTTCTCCGTCG 59.264 60.000 0.00 0.00 0.00 5.12
1117 1274 2.933287 ATCCACTGGTTCCGGCCA 60.933 61.111 2.24 0.00 36.97 5.36
1119 1276 3.953775 CCACTGGTTCCGGCCACT 61.954 66.667 2.24 0.00 34.36 4.00
1120 1277 2.669569 CACTGGTTCCGGCCACTG 60.670 66.667 2.24 0.00 34.36 3.66
1123 1280 2.925706 TGGTTCCGGCCACTGCTA 60.926 61.111 2.24 0.00 37.74 3.49
1132 1289 2.103143 CCACTGCTAGCTCCGACG 59.897 66.667 17.23 0.13 0.00 5.12
1158 1321 6.616017 AGTCTACATAGATACGTGCATGATG 58.384 40.000 14.17 7.93 34.39 3.07
1159 1322 5.802451 GTCTACATAGATACGTGCATGATGG 59.198 44.000 14.17 0.00 34.39 3.51
1160 1323 3.329386 ACATAGATACGTGCATGATGGC 58.671 45.455 14.17 0.00 0.00 4.40
1386 1549 2.681064 TTCCCCGACCACTACCCG 60.681 66.667 0.00 0.00 0.00 5.28
1397 1560 1.041447 CACTACCCGGAGTACCCCAG 61.041 65.000 0.73 0.00 0.00 4.45
1478 1641 4.778415 CCGCCAGTCCGTCGTCTG 62.778 72.222 7.43 7.43 0.00 3.51
1752 1930 2.665000 CTGGACCTGTGCGACCAT 59.335 61.111 0.00 0.00 0.00 3.55
1833 2011 2.432628 GTCGCCACCTTCTCCGTG 60.433 66.667 0.00 0.00 0.00 4.94
1920 2098 2.754658 TTCCTCGGCGGAGACCTC 60.755 66.667 21.85 0.00 44.28 3.85
2057 2235 4.530857 GATCGTGCCCGGGGTGAG 62.531 72.222 25.28 6.21 33.95 3.51
2198 2377 7.227512 CCAACCAACTTGATCATTATACTCCTC 59.772 40.741 0.00 0.00 30.42 3.71
2201 2380 7.158021 CCAACTTGATCATTATACTCCTCCTC 58.842 42.308 0.00 0.00 0.00 3.71
2203 2382 6.629156 ACTTGATCATTATACTCCTCCTCCT 58.371 40.000 0.00 0.00 0.00 3.69
2204 2383 7.770662 ACTTGATCATTATACTCCTCCTCCTA 58.229 38.462 0.00 0.00 0.00 2.94
2219 2399 7.888105 TCCTCCTCCTACATGCTATAGATTAT 58.112 38.462 3.21 0.00 0.00 1.28
2220 2400 9.015146 TCCTCCTCCTACATGCTATAGATTATA 57.985 37.037 3.21 0.00 0.00 0.98
2221 2401 9.073475 CCTCCTCCTACATGCTATAGATTATAC 57.927 40.741 3.21 0.00 0.00 1.47
2222 2402 9.634021 CTCCTCCTACATGCTATAGATTATACA 57.366 37.037 3.21 0.00 0.00 2.29
2223 2403 9.634021 TCCTCCTACATGCTATAGATTATACAG 57.366 37.037 3.21 0.00 0.00 2.74
2224 2404 9.415008 CCTCCTACATGCTATAGATTATACAGT 57.585 37.037 3.21 0.00 0.00 3.55
2245 2425 8.211116 ACAGTTATACTACACACTAGTAGCTG 57.789 38.462 0.00 0.00 44.14 4.24
2246 2426 7.282675 ACAGTTATACTACACACTAGTAGCTGG 59.717 40.741 0.00 0.00 44.14 4.85
2247 2427 7.282675 CAGTTATACTACACACTAGTAGCTGGT 59.717 40.741 0.00 0.00 44.14 4.00
2248 2428 7.282675 AGTTATACTACACACTAGTAGCTGGTG 59.717 40.741 10.39 10.39 46.13 4.17
2249 2429 3.090037 ACTACACACTAGTAGCTGGTGG 58.910 50.000 15.18 8.87 45.21 4.61
2265 2445 6.300703 AGCTGGTGGTCTAGTCTAGTTATAG 58.699 44.000 6.77 1.81 0.00 1.31
2376 2574 5.212934 TCATATTGCACTCGTCTTATCGTC 58.787 41.667 0.00 0.00 0.00 4.20
2388 2586 4.441415 CGTCTTATCGTCAAGCTAATCCAC 59.559 45.833 0.00 0.00 0.00 4.02
2396 2594 5.358725 TCGTCAAGCTAATCCACATAGTGTA 59.641 40.000 0.00 0.00 0.00 2.90
2405 2603 9.706691 GCTAATCCACATAGTGTAATAAAGCTA 57.293 33.333 0.00 0.00 0.00 3.32
2475 2678 6.526414 TCATGATGATGAGGCGTCATAAACG 61.526 44.000 21.14 8.78 43.92 3.60
2497 2700 4.558697 CGGACAAATACACTGACAGAGACA 60.559 45.833 10.08 0.00 0.00 3.41
2568 2782 6.473455 CACAATCAACACTTGTTTTCTCTTCC 59.527 38.462 0.00 0.00 34.69 3.46
2582 2837 9.581289 TGTTTTCTCTTCCCTTTCATAATTACA 57.419 29.630 0.00 0.00 0.00 2.41
2585 2851 9.973661 TTTCTCTTCCCTTTCATAATTACATCA 57.026 29.630 0.00 0.00 0.00 3.07
2595 2861 9.764870 CTTTCATAATTACATCATGCTAATCGG 57.235 33.333 0.00 0.00 0.00 4.18
2611 2893 7.497595 TGCTAATCGGTTAGATATCTGTTGTT 58.502 34.615 19.65 5.54 39.77 2.83
2635 2917 1.001406 CAGGGAAGCGACTTCTTCAGT 59.999 52.381 15.80 0.00 43.14 3.41
2638 2920 1.433534 GAAGCGACTTCTTCAGTGGG 58.566 55.000 10.97 0.00 41.48 4.61
2692 2974 4.772231 AAGGGCGAGTCGGGGCTA 62.772 66.667 15.52 0.00 0.00 3.93
2698 2980 0.890090 GCGAGTCGGGGCTATACTCT 60.890 60.000 15.52 0.00 37.97 3.24
2815 3097 3.117171 CGGTCGTCGTCGTCCTCT 61.117 66.667 14.87 0.00 41.60 3.69
2816 3098 1.807165 CGGTCGTCGTCGTCCTCTA 60.807 63.158 14.87 0.00 41.60 2.43
2819 3101 0.304098 GTCGTCGTCGTCCTCTATGG 59.696 60.000 1.33 0.00 38.33 2.74
2820 3102 0.107993 TCGTCGTCGTCCTCTATGGT 60.108 55.000 1.33 0.00 38.33 3.55
2821 3103 0.027716 CGTCGTCGTCCTCTATGGTG 59.972 60.000 0.00 0.00 37.07 4.17
2822 3104 0.248539 GTCGTCGTCCTCTATGGTGC 60.249 60.000 0.00 0.00 37.07 5.01
2823 3105 1.065928 CGTCGTCCTCTATGGTGCC 59.934 63.158 0.00 0.00 37.07 5.01
2824 3106 1.065928 GTCGTCCTCTATGGTGCCG 59.934 63.158 0.00 0.00 37.07 5.69
2895 3177 3.636300 TGAATCCTGAACCAACAACAAGG 59.364 43.478 0.00 0.00 0.00 3.61
2896 3178 1.398692 TCCTGAACCAACAACAAGGC 58.601 50.000 0.00 0.00 0.00 4.35
2897 3179 1.110442 CCTGAACCAACAACAAGGCA 58.890 50.000 0.00 0.00 0.00 4.75
2898 3180 1.480137 CCTGAACCAACAACAAGGCAA 59.520 47.619 0.00 0.00 0.00 4.52
2901 3183 4.298332 CTGAACCAACAACAAGGCAATAC 58.702 43.478 0.00 0.00 0.00 1.89
2902 3184 3.243234 TGAACCAACAACAAGGCAATACG 60.243 43.478 0.00 0.00 0.00 3.06
2903 3185 1.611491 ACCAACAACAAGGCAATACGG 59.389 47.619 0.00 0.00 0.00 4.02
2904 3186 1.883275 CCAACAACAAGGCAATACGGA 59.117 47.619 0.00 0.00 0.00 4.69
2905 3187 2.294791 CCAACAACAAGGCAATACGGAA 59.705 45.455 0.00 0.00 0.00 4.30
2906 3188 3.564511 CAACAACAAGGCAATACGGAAG 58.435 45.455 0.00 0.00 0.00 3.46
2907 3189 2.159382 ACAACAAGGCAATACGGAAGG 58.841 47.619 0.00 0.00 0.00 3.46
2908 3190 1.135402 CAACAAGGCAATACGGAAGGC 60.135 52.381 0.00 0.00 0.00 4.35
2909 3191 0.679960 ACAAGGCAATACGGAAGGCC 60.680 55.000 4.80 4.80 46.77 5.19
2911 3193 3.827634 GGCAATACGGAAGGCCAG 58.172 61.111 5.01 0.00 45.70 4.85
2912 3194 1.223487 GGCAATACGGAAGGCCAGA 59.777 57.895 5.01 0.00 45.70 3.86
2936 3218 2.125512 ATCTGAAGCCGGACGCAC 60.126 61.111 5.05 0.00 41.38 5.34
2984 3273 3.182263 CACCCCACCCCACTGGAA 61.182 66.667 0.00 0.00 38.00 3.53
2985 3274 2.858974 ACCCCACCCCACTGGAAG 60.859 66.667 0.00 0.00 42.29 3.46
2987 3276 2.531685 CCCACCCCACTGGAAGGA 60.532 66.667 0.00 0.00 39.30 3.36
2988 3277 2.160171 CCCACCCCACTGGAAGGAA 61.160 63.158 0.00 0.00 39.30 3.36
2990 3279 0.539669 CCACCCCACTGGAAGGAAAC 60.540 60.000 0.00 0.00 39.30 2.78
2991 3280 0.184933 CACCCCACTGGAAGGAAACA 59.815 55.000 0.00 0.00 39.30 2.83
2994 3283 1.963515 CCCCACTGGAAGGAAACAAAG 59.036 52.381 0.00 0.00 39.30 2.77
2995 3284 1.963515 CCCACTGGAAGGAAACAAAGG 59.036 52.381 0.00 0.00 39.30 3.11
3022 3323 1.014044 TCGCTGTCGCTGAATGGTTC 61.014 55.000 0.00 0.00 35.26 3.62
3023 3324 1.421485 GCTGTCGCTGAATGGTTCG 59.579 57.895 0.00 0.00 0.00 3.95
3024 3325 1.014044 GCTGTCGCTGAATGGTTCGA 61.014 55.000 0.00 0.00 0.00 3.71
3025 3326 0.994995 CTGTCGCTGAATGGTTCGAG 59.005 55.000 0.00 0.00 0.00 4.04
3026 3327 0.601057 TGTCGCTGAATGGTTCGAGA 59.399 50.000 0.00 0.00 0.00 4.04
3027 3328 1.272781 GTCGCTGAATGGTTCGAGAG 58.727 55.000 0.00 0.00 0.00 3.20
3028 3329 0.173481 TCGCTGAATGGTTCGAGAGG 59.827 55.000 0.00 0.00 0.00 3.69
3029 3330 1.424493 CGCTGAATGGTTCGAGAGGC 61.424 60.000 0.00 0.00 0.00 4.70
3030 3331 1.092345 GCTGAATGGTTCGAGAGGCC 61.092 60.000 0.00 0.00 0.00 5.19
3031 3332 0.250234 CTGAATGGTTCGAGAGGCCA 59.750 55.000 5.01 3.28 39.87 5.36
3032 3333 0.911769 TGAATGGTTCGAGAGGCCAT 59.088 50.000 5.01 6.95 44.68 4.40
3033 3334 1.134401 TGAATGGTTCGAGAGGCCATC 60.134 52.381 5.01 0.77 43.01 3.51
3034 3335 0.181350 AATGGTTCGAGAGGCCATCC 59.819 55.000 5.01 0.00 43.01 3.51
3035 3336 0.982852 ATGGTTCGAGAGGCCATCCA 60.983 55.000 5.01 0.00 41.11 3.41
3036 3337 0.982852 TGGTTCGAGAGGCCATCCAT 60.983 55.000 5.01 0.00 33.10 3.41
3037 3338 1.048601 GGTTCGAGAGGCCATCCATA 58.951 55.000 5.01 0.00 33.74 2.74
3038 3339 1.001406 GGTTCGAGAGGCCATCCATAG 59.999 57.143 5.01 0.00 33.74 2.23
3039 3340 0.681733 TTCGAGAGGCCATCCATAGC 59.318 55.000 5.01 0.00 33.74 2.97
3070 3371 7.468494 CGGAGTGCCATAGATAGATAGATGAAG 60.468 44.444 0.00 0.00 0.00 3.02
3082 3383 1.043816 AGATGAAGCACCGGATCGAT 58.956 50.000 9.46 0.00 0.00 3.59
3083 3384 1.000283 AGATGAAGCACCGGATCGATC 60.000 52.381 17.36 17.36 0.00 3.69
3084 3385 0.319040 ATGAAGCACCGGATCGATCG 60.319 55.000 18.81 9.36 0.00 3.69
3085 3386 1.359117 GAAGCACCGGATCGATCGA 59.641 57.895 21.86 21.86 0.00 3.59
3086 3387 0.935366 GAAGCACCGGATCGATCGAC 60.935 60.000 22.06 14.00 0.00 4.20
3087 3388 1.663379 AAGCACCGGATCGATCGACA 61.663 55.000 22.06 0.00 0.00 4.35
3088 3389 1.226859 GCACCGGATCGATCGACAA 60.227 57.895 22.06 0.00 0.00 3.18
3089 3390 1.480219 GCACCGGATCGATCGACAAC 61.480 60.000 22.06 14.36 0.00 3.32
3090 3391 0.100682 CACCGGATCGATCGACAACT 59.899 55.000 22.06 3.88 0.00 3.16
3100 3401 6.696148 GGATCGATCGACAACTTATTAACAGT 59.304 38.462 22.06 0.00 0.00 3.55
3147 3456 3.443045 CGTGTTGATGGGCCCTGC 61.443 66.667 25.70 15.57 0.00 4.85
3153 3462 2.910994 GATGGGCCCTGCATCTGC 60.911 66.667 25.70 0.00 42.50 4.26
3176 3496 2.224499 GGAAGGCAGGATCATCTTCTCC 60.224 54.545 8.25 0.00 36.71 3.71
3231 3556 1.960417 GCTAGCCTAGCCTCTTTTGG 58.040 55.000 12.88 0.00 45.95 3.28
3235 3564 1.425448 AGCCTAGCCTCTTTTGGTTGT 59.575 47.619 0.00 0.00 0.00 3.32
3244 3573 6.852664 AGCCTCTTTTGGTTGTAATAAATCG 58.147 36.000 0.00 0.00 0.00 3.34
3256 3585 4.629634 TGTAATAAATCGGTGACTGTGCTG 59.370 41.667 0.00 0.00 0.00 4.41
3266 3606 3.689161 GGTGACTGTGCTGTGCATATAAA 59.311 43.478 0.00 0.00 41.91 1.40
3267 3607 4.336433 GGTGACTGTGCTGTGCATATAAAT 59.664 41.667 0.00 0.00 41.91 1.40
3268 3608 5.504665 GGTGACTGTGCTGTGCATATAAATC 60.505 44.000 0.00 0.00 41.91 2.17
3269 3609 5.295292 GTGACTGTGCTGTGCATATAAATCT 59.705 40.000 0.00 0.00 41.91 2.40
3270 3610 5.295045 TGACTGTGCTGTGCATATAAATCTG 59.705 40.000 0.00 0.00 41.91 2.90
3272 3612 4.201657 TGTGCTGTGCATATAAATCTGCT 58.798 39.130 0.00 0.00 41.91 4.24
3273 3613 4.035909 TGTGCTGTGCATATAAATCTGCTG 59.964 41.667 0.00 0.00 41.91 4.41
3274 3614 3.566742 TGCTGTGCATATAAATCTGCTGG 59.433 43.478 0.00 0.00 39.16 4.85
3275 3615 3.817084 GCTGTGCATATAAATCTGCTGGA 59.183 43.478 0.00 0.00 39.16 3.86
3300 3644 1.679139 CTGACCTGCACCTTGTTCAA 58.321 50.000 0.00 0.00 0.00 2.69
3301 3645 2.233271 CTGACCTGCACCTTGTTCAAT 58.767 47.619 0.00 0.00 0.00 2.57
3302 3646 2.624838 CTGACCTGCACCTTGTTCAATT 59.375 45.455 0.00 0.00 0.00 2.32
3303 3647 2.622942 TGACCTGCACCTTGTTCAATTC 59.377 45.455 0.00 0.00 0.00 2.17
3304 3648 2.622942 GACCTGCACCTTGTTCAATTCA 59.377 45.455 0.00 0.00 0.00 2.57
3305 3649 2.362077 ACCTGCACCTTGTTCAATTCAC 59.638 45.455 0.00 0.00 0.00 3.18
3348 3693 2.061220 CTTGCTGGGTGGAGACTGA 58.939 57.895 0.00 0.00 0.00 3.41
3349 3694 0.321122 CTTGCTGGGTGGAGACTGAC 60.321 60.000 0.00 0.00 0.00 3.51
3350 3695 2.099652 TTGCTGGGTGGAGACTGACG 62.100 60.000 0.00 0.00 0.00 4.35
3351 3696 2.574955 GCTGGGTGGAGACTGACGT 61.575 63.158 0.00 0.00 0.00 4.34
3352 3697 1.290324 CTGGGTGGAGACTGACGTG 59.710 63.158 0.00 0.00 0.00 4.49
3410 3755 8.696043 TGGGAATAAAATCAGTAATCATGAGG 57.304 34.615 0.09 0.00 0.00 3.86
3411 3756 7.725397 TGGGAATAAAATCAGTAATCATGAGGG 59.275 37.037 0.09 0.00 0.00 4.30
3412 3757 7.944554 GGGAATAAAATCAGTAATCATGAGGGA 59.055 37.037 0.09 0.00 0.00 4.20
3413 3758 9.007901 GGAATAAAATCAGTAATCATGAGGGAG 57.992 37.037 0.09 0.00 0.00 4.30
3416 3761 6.753913 AAATCAGTAATCATGAGGGAGCTA 57.246 37.500 0.09 0.00 0.00 3.32
3477 3824 3.053077 TCACAAGGAAGGAAGGAAGGAA 58.947 45.455 0.00 0.00 0.00 3.36
3479 3826 2.376855 ACAAGGAAGGAAGGAAGGAAGG 59.623 50.000 0.00 0.00 0.00 3.46
3480 3827 2.644798 CAAGGAAGGAAGGAAGGAAGGA 59.355 50.000 0.00 0.00 0.00 3.36
3481 3828 3.005529 AGGAAGGAAGGAAGGAAGGAA 57.994 47.619 0.00 0.00 0.00 3.36
3482 3829 2.916269 AGGAAGGAAGGAAGGAAGGAAG 59.084 50.000 0.00 0.00 0.00 3.46
3483 3830 2.025793 GGAAGGAAGGAAGGAAGGAAGG 60.026 54.545 0.00 0.00 0.00 3.46
3489 3836 2.556766 AGGAAGGAAGGAAGGAAGGAG 58.443 52.381 0.00 0.00 0.00 3.69
3498 3845 1.626631 GGAAGGAAGGAGGGAGGATGT 60.627 57.143 0.00 0.00 0.00 3.06
3499 3846 2.360423 GGAAGGAAGGAGGGAGGATGTA 60.360 54.545 0.00 0.00 0.00 2.29
3500 3847 2.785357 AGGAAGGAGGGAGGATGTAG 57.215 55.000 0.00 0.00 0.00 2.74
3501 3848 1.052617 GGAAGGAGGGAGGATGTAGC 58.947 60.000 0.00 0.00 0.00 3.58
3502 3849 1.692762 GGAAGGAGGGAGGATGTAGCA 60.693 57.143 0.00 0.00 0.00 3.49
3503 3850 1.691434 GAAGGAGGGAGGATGTAGCAG 59.309 57.143 0.00 0.00 0.00 4.24
3504 3851 0.937441 AGGAGGGAGGATGTAGCAGA 59.063 55.000 0.00 0.00 0.00 4.26
3505 3852 1.044611 GGAGGGAGGATGTAGCAGAC 58.955 60.000 0.00 0.00 0.00 3.51
3506 3853 1.412361 GGAGGGAGGATGTAGCAGACT 60.412 57.143 0.00 0.00 0.00 3.24
3537 3884 4.004982 GCTTTGGTGCCATTCATTCATTT 58.995 39.130 0.00 0.00 0.00 2.32
3538 3885 4.093850 GCTTTGGTGCCATTCATTCATTTC 59.906 41.667 0.00 0.00 0.00 2.17
3587 3934 3.070018 GTGTGATCTGTTCCTGTTCCTG 58.930 50.000 0.00 0.00 0.00 3.86
3590 3937 3.748568 GTGATCTGTTCCTGTTCCTGTTC 59.251 47.826 0.00 0.00 0.00 3.18
3591 3938 2.930826 TCTGTTCCTGTTCCTGTTCC 57.069 50.000 0.00 0.00 0.00 3.62
3594 3941 1.843851 TGTTCCTGTTCCTGTTCCTGT 59.156 47.619 0.00 0.00 0.00 4.00
3598 3945 1.421646 CCTGTTCCTGTTCCTGTTCCT 59.578 52.381 0.00 0.00 0.00 3.36
3599 3946 2.498167 CTGTTCCTGTTCCTGTTCCTG 58.502 52.381 0.00 0.00 0.00 3.86
3601 3948 2.241176 TGTTCCTGTTCCTGTTCCTGTT 59.759 45.455 0.00 0.00 0.00 3.16
3602 3949 2.618709 GTTCCTGTTCCTGTTCCTGTTG 59.381 50.000 0.00 0.00 0.00 3.33
3603 3950 1.142870 TCCTGTTCCTGTTCCTGTTGG 59.857 52.381 0.00 0.00 0.00 3.77
3604 3951 0.954452 CTGTTCCTGTTCCTGTTGGC 59.046 55.000 0.00 0.00 0.00 4.52
3605 3952 0.467290 TGTTCCTGTTCCTGTTGGCC 60.467 55.000 0.00 0.00 0.00 5.36
3606 3953 0.178990 GTTCCTGTTCCTGTTGGCCT 60.179 55.000 3.32 0.00 0.00 5.19
3607 3954 0.178992 TTCCTGTTCCTGTTGGCCTG 60.179 55.000 3.32 0.00 0.00 4.85
3608 3955 2.270986 CCTGTTCCTGTTGGCCTGC 61.271 63.158 3.32 0.00 0.00 4.85
3609 3956 1.228367 CTGTTCCTGTTGGCCTGCT 60.228 57.895 3.32 0.00 0.00 4.24
3610 3957 1.521450 CTGTTCCTGTTGGCCTGCTG 61.521 60.000 3.32 0.43 0.00 4.41
3611 3958 1.529244 GTTCCTGTTGGCCTGCTGT 60.529 57.895 3.32 0.00 0.00 4.40
3612 3959 1.109323 GTTCCTGTTGGCCTGCTGTT 61.109 55.000 3.32 0.00 0.00 3.16
3613 3960 1.108727 TTCCTGTTGGCCTGCTGTTG 61.109 55.000 3.32 0.00 0.00 3.33
3614 3961 1.829533 CCTGTTGGCCTGCTGTTGT 60.830 57.895 3.32 0.00 0.00 3.32
3615 3962 0.537143 CCTGTTGGCCTGCTGTTGTA 60.537 55.000 3.32 0.00 0.00 2.41
3616 3963 0.877071 CTGTTGGCCTGCTGTTGTAG 59.123 55.000 3.32 0.00 0.00 2.74
3617 3964 0.537143 TGTTGGCCTGCTGTTGTAGG 60.537 55.000 3.32 0.00 46.94 3.18
3618 3965 0.537371 GTTGGCCTGCTGTTGTAGGT 60.537 55.000 3.32 0.00 46.09 3.08
3619 3966 1.060729 TTGGCCTGCTGTTGTAGGTA 58.939 50.000 3.32 0.00 46.09 3.08
3620 3967 0.613260 TGGCCTGCTGTTGTAGGTAG 59.387 55.000 3.32 0.00 46.09 3.18
3621 3968 0.107654 GGCCTGCTGTTGTAGGTAGG 60.108 60.000 0.00 0.00 46.09 3.18
3622 3969 0.107654 GCCTGCTGTTGTAGGTAGGG 60.108 60.000 2.46 0.00 46.09 3.53
3623 3970 1.276622 CCTGCTGTTGTAGGTAGGGT 58.723 55.000 0.00 0.00 40.57 4.34
3678 4027 1.550524 TCCATGTGTCCTGCTCTACAC 59.449 52.381 8.49 8.49 44.97 2.90
3737 4093 9.937577 CATACGTACGTACAATGATTATGATTG 57.062 33.333 28.99 14.49 36.94 2.67
3778 4134 1.398958 TTCCCCAGCCAACAAACAGC 61.399 55.000 0.00 0.00 0.00 4.40
3800 4156 2.941064 ACAAACAGATCATCATCAGCCG 59.059 45.455 0.00 0.00 0.00 5.52
3807 4163 3.508012 AGATCATCATCAGCCGTACTACC 59.492 47.826 0.00 0.00 0.00 3.18
3809 4165 2.361119 TCATCATCAGCCGTACTACCAC 59.639 50.000 0.00 0.00 0.00 4.16
3842 4198 4.836931 GCATCTGCATCTGATACATACG 57.163 45.455 0.00 0.00 41.59 3.06
3843 4199 3.615937 GCATCTGCATCTGATACATACGG 59.384 47.826 0.00 0.00 41.59 4.02
3844 4200 3.303881 TCTGCATCTGATACATACGGC 57.696 47.619 0.00 0.00 0.00 5.68
3845 4201 2.029020 TCTGCATCTGATACATACGGCC 60.029 50.000 0.00 0.00 0.00 6.13
3846 4202 1.001974 TGCATCTGATACATACGGCCC 59.998 52.381 0.00 0.00 0.00 5.80
3847 4203 1.001974 GCATCTGATACATACGGCCCA 59.998 52.381 0.00 0.00 0.00 5.36
3848 4204 2.932622 GCATCTGATACATACGGCCCAG 60.933 54.545 0.00 0.00 0.00 4.45
3849 4205 0.679505 TCTGATACATACGGCCCAGC 59.320 55.000 0.00 0.00 0.00 4.85
3850 4206 0.320771 CTGATACATACGGCCCAGCC 60.321 60.000 0.00 0.00 46.75 4.85
3860 4216 4.066139 GCCCAGCCCACCAAGGAT 62.066 66.667 0.00 0.00 41.22 3.24
3861 4217 2.276740 CCCAGCCCACCAAGGATC 59.723 66.667 0.00 0.00 41.22 3.36
3862 4218 2.615465 CCCAGCCCACCAAGGATCA 61.615 63.158 0.00 0.00 41.22 2.92
3863 4219 1.077212 CCAGCCCACCAAGGATCAG 60.077 63.158 0.00 0.00 41.22 2.90
3864 4220 1.751927 CAGCCCACCAAGGATCAGC 60.752 63.158 0.00 0.00 41.22 4.26
3865 4221 2.233566 AGCCCACCAAGGATCAGCA 61.234 57.895 0.00 0.00 41.22 4.41
3866 4222 1.076485 GCCCACCAAGGATCAGCAT 60.076 57.895 0.00 0.00 41.22 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.149196 TCCAAAACAAGTGATCTGAGGC 58.851 45.455 0.00 0.00 0.00 4.70
1 2 5.507985 GGTTTCCAAAACAAGTGATCTGAGG 60.508 44.000 5.07 0.00 0.00 3.86
2 3 5.523369 GGTTTCCAAAACAAGTGATCTGAG 58.477 41.667 5.07 0.00 0.00 3.35
3 4 4.036262 CGGTTTCCAAAACAAGTGATCTGA 59.964 41.667 5.07 0.00 0.00 3.27
4 5 4.036262 TCGGTTTCCAAAACAAGTGATCTG 59.964 41.667 5.07 0.00 0.00 2.90
5 6 4.204012 TCGGTTTCCAAAACAAGTGATCT 58.796 39.130 5.07 0.00 0.00 2.75
6 7 4.561735 TCGGTTTCCAAAACAAGTGATC 57.438 40.909 5.07 0.00 0.00 2.92
7 8 5.183140 CCTATCGGTTTCCAAAACAAGTGAT 59.817 40.000 5.07 5.08 0.00 3.06
8 9 4.517453 CCTATCGGTTTCCAAAACAAGTGA 59.483 41.667 5.07 0.00 0.00 3.41
9 10 4.320935 CCCTATCGGTTTCCAAAACAAGTG 60.321 45.833 5.07 0.00 0.00 3.16
10 11 3.824443 CCCTATCGGTTTCCAAAACAAGT 59.176 43.478 5.07 0.00 0.00 3.16
11 12 4.076394 TCCCTATCGGTTTCCAAAACAAG 58.924 43.478 5.07 0.00 0.00 3.16
12 13 3.822167 GTCCCTATCGGTTTCCAAAACAA 59.178 43.478 5.07 0.00 0.00 2.83
13 14 3.181442 TGTCCCTATCGGTTTCCAAAACA 60.181 43.478 5.07 0.00 0.00 2.83
14 15 3.189910 GTGTCCCTATCGGTTTCCAAAAC 59.810 47.826 0.00 0.00 0.00 2.43
15 16 3.414269 GTGTCCCTATCGGTTTCCAAAA 58.586 45.455 0.00 0.00 0.00 2.44
16 17 2.290450 GGTGTCCCTATCGGTTTCCAAA 60.290 50.000 0.00 0.00 0.00 3.28
17 18 1.279846 GGTGTCCCTATCGGTTTCCAA 59.720 52.381 0.00 0.00 0.00 3.53
18 19 0.906775 GGTGTCCCTATCGGTTTCCA 59.093 55.000 0.00 0.00 0.00 3.53
19 20 0.179702 GGGTGTCCCTATCGGTTTCC 59.820 60.000 0.00 0.00 41.34 3.13
20 21 0.906775 TGGGTGTCCCTATCGGTTTC 59.093 55.000 6.38 0.00 45.70 2.78
31 32 4.369182 CTCGTCAACTTATATGGGTGTCC 58.631 47.826 0.00 0.00 0.00 4.02
50 51 4.861210 GAGGTGATAGTGAACATACCTCG 58.139 47.826 0.00 0.00 43.10 4.63
65 66 4.629204 GCCTCGAGGTATATAGGAGGTGAT 60.629 50.000 31.43 0.00 44.81 3.06
83 84 0.249073 AGCGCTTGTAGTATGCCTCG 60.249 55.000 2.64 0.00 0.00 4.63
85 86 0.105039 GGAGCGCTTGTAGTATGCCT 59.895 55.000 13.26 0.00 0.00 4.75
95 96 2.169789 CCGTGATCTGGAGCGCTTG 61.170 63.158 13.26 5.43 0.00 4.01
99 100 1.300465 CATCCCGTGATCTGGAGCG 60.300 63.158 6.18 0.00 33.27 5.03
106 107 0.820891 AAGCATGCCATCCCGTGATC 60.821 55.000 15.66 0.00 0.00 2.92
147 148 1.381327 TCCTTCCACTCTAGCCCCG 60.381 63.158 0.00 0.00 0.00 5.73
180 182 6.668323 TCCACTTGAATTTCAAATCGACTTC 58.332 36.000 12.62 0.00 35.73 3.01
181 183 6.633500 TCCACTTGAATTTCAAATCGACTT 57.367 33.333 12.62 0.00 35.73 3.01
186 188 8.437360 AAAACCTTCCACTTGAATTTCAAATC 57.563 30.769 12.62 0.00 35.73 2.17
217 219 4.277476 TCCTTCCACTTGCTTCTCAAAAA 58.723 39.130 0.00 0.00 33.65 1.94
218 220 3.885297 CTCCTTCCACTTGCTTCTCAAAA 59.115 43.478 0.00 0.00 33.65 2.44
219 221 3.117888 ACTCCTTCCACTTGCTTCTCAAA 60.118 43.478 0.00 0.00 33.65 2.69
220 222 2.439507 ACTCCTTCCACTTGCTTCTCAA 59.560 45.455 0.00 0.00 0.00 3.02
221 223 2.050144 ACTCCTTCCACTTGCTTCTCA 58.950 47.619 0.00 0.00 0.00 3.27
222 224 2.849294 ACTCCTTCCACTTGCTTCTC 57.151 50.000 0.00 0.00 0.00 2.87
223 225 3.904339 TCTAACTCCTTCCACTTGCTTCT 59.096 43.478 0.00 0.00 0.00 2.85
224 226 4.273148 TCTAACTCCTTCCACTTGCTTC 57.727 45.455 0.00 0.00 0.00 3.86
225 227 4.917906 ATCTAACTCCTTCCACTTGCTT 57.082 40.909 0.00 0.00 0.00 3.91
226 228 6.042208 GGTATATCTAACTCCTTCCACTTGCT 59.958 42.308 0.00 0.00 0.00 3.91
227 229 6.042208 AGGTATATCTAACTCCTTCCACTTGC 59.958 42.308 0.00 0.00 0.00 4.01
270 274 1.425066 TGCATCCAACTCCTTCCACTT 59.575 47.619 0.00 0.00 0.00 3.16
284 288 2.093288 TCATTGACTCTCAGGTGCATCC 60.093 50.000 0.00 0.00 0.00 3.51
289 293 5.077134 TGTGTATCATTGACTCTCAGGTG 57.923 43.478 0.00 0.00 0.00 4.00
294 298 9.926158 AATAGATCATGTGTATCATTGACTCTC 57.074 33.333 0.00 0.00 34.09 3.20
387 393 8.368126 CGATGTCTTGCAAAATTCTTTTATGTC 58.632 33.333 0.00 0.00 0.00 3.06
389 395 8.451687 TCGATGTCTTGCAAAATTCTTTTATG 57.548 30.769 0.00 0.00 0.00 1.90
406 412 7.436933 TCAATATAAGCACATCTTCGATGTCT 58.563 34.615 6.52 5.22 36.25 3.41
409 415 8.715088 TCAATCAATATAAGCACATCTTCGATG 58.285 33.333 2.49 2.49 36.25 3.84
460 466 6.921857 GTGCTAGTAGACCGATGCTAAATTAA 59.078 38.462 0.00 0.00 0.00 1.40
463 469 4.585162 AGTGCTAGTAGACCGATGCTAAAT 59.415 41.667 0.00 0.00 0.00 1.40
511 539 8.937207 AGGAACGGAGTGATTACTATATAACT 57.063 34.615 0.00 0.00 45.00 2.24
521 549 8.092687 GGCTTATATTTAGGAACGGAGTGATTA 58.907 37.037 0.00 0.00 45.00 1.75
523 551 6.270231 AGGCTTATATTTAGGAACGGAGTGAT 59.730 38.462 0.00 0.00 45.00 3.06
524 552 5.601313 AGGCTTATATTTAGGAACGGAGTGA 59.399 40.000 0.00 0.00 45.00 3.41
553 581 9.415544 TCATATGTTGTCAATATTGAGATCTCG 57.584 33.333 18.47 2.62 37.98 4.04
566 598 7.010460 CGCTCATTCTACTTCATATGTTGTCAA 59.990 37.037 1.90 1.38 0.00 3.18
567 599 6.476706 CGCTCATTCTACTTCATATGTTGTCA 59.523 38.462 1.90 0.00 0.00 3.58
571 603 6.810911 AGACGCTCATTCTACTTCATATGTT 58.189 36.000 1.90 0.00 0.00 2.71
576 608 9.232473 TGTATATAGACGCTCATTCTACTTCAT 57.768 33.333 0.00 0.00 0.00 2.57
577 609 8.617290 TGTATATAGACGCTCATTCTACTTCA 57.383 34.615 0.00 0.00 0.00 3.02
578 610 9.710979 GATGTATATAGACGCTCATTCTACTTC 57.289 37.037 0.00 0.00 0.00 3.01
582 614 8.753497 ATGGATGTATATAGACGCTCATTCTA 57.247 34.615 0.00 0.00 0.00 2.10
584 616 9.404348 CATATGGATGTATATAGACGCTCATTC 57.596 37.037 0.00 0.00 0.00 2.67
643 698 0.771755 GAAGGGCCCCGGATCTAAAT 59.228 55.000 21.43 0.00 0.00 1.40
651 706 2.187896 TTAAGAACGAAGGGCCCCGG 62.188 60.000 21.43 10.88 0.00 5.73
653 708 2.139323 ATTTAAGAACGAAGGGCCCC 57.861 50.000 21.43 2.17 0.00 5.80
656 711 9.850628 AAAAACTTATATTTAAGAACGAAGGGC 57.149 29.630 9.58 0.00 38.56 5.19
729 785 7.889315 CGTAGACGTAATTTTAGAGTGTAGG 57.111 40.000 0.00 0.00 34.11 3.18
771 861 4.758674 GGGGCGGTCTCTAAATATAAAACC 59.241 45.833 0.00 0.00 0.00 3.27
772 862 5.618236 AGGGGCGGTCTCTAAATATAAAAC 58.382 41.667 0.00 0.00 0.00 2.43
773 863 5.221783 GGAGGGGCGGTCTCTAAATATAAAA 60.222 44.000 0.00 0.00 0.00 1.52
774 864 4.285260 GGAGGGGCGGTCTCTAAATATAAA 59.715 45.833 0.00 0.00 0.00 1.40
775 865 3.836562 GGAGGGGCGGTCTCTAAATATAA 59.163 47.826 0.00 0.00 0.00 0.98
776 866 3.181415 TGGAGGGGCGGTCTCTAAATATA 60.181 47.826 0.00 0.00 0.00 0.86
777 867 2.258109 GGAGGGGCGGTCTCTAAATAT 58.742 52.381 0.00 0.00 0.00 1.28
778 868 1.062734 TGGAGGGGCGGTCTCTAAATA 60.063 52.381 0.00 0.00 0.00 1.40
779 869 0.326238 TGGAGGGGCGGTCTCTAAAT 60.326 55.000 0.00 0.00 0.00 1.40
780 870 0.326238 ATGGAGGGGCGGTCTCTAAA 60.326 55.000 0.00 0.00 0.00 1.85
781 871 0.326238 AATGGAGGGGCGGTCTCTAA 60.326 55.000 0.00 0.00 0.00 2.10
782 872 0.759436 GAATGGAGGGGCGGTCTCTA 60.759 60.000 0.00 0.00 0.00 2.43
783 873 2.041265 AATGGAGGGGCGGTCTCT 59.959 61.111 0.00 0.00 0.00 3.10
784 874 1.627297 AAGAATGGAGGGGCGGTCTC 61.627 60.000 0.00 0.00 0.00 3.36
785 875 1.616628 AAGAATGGAGGGGCGGTCT 60.617 57.895 0.00 0.00 0.00 3.85
786 876 1.452108 CAAGAATGGAGGGGCGGTC 60.452 63.158 0.00 0.00 0.00 4.79
787 877 1.497309 TTCAAGAATGGAGGGGCGGT 61.497 55.000 0.00 0.00 0.00 5.68
788 878 0.106519 ATTCAAGAATGGAGGGGCGG 60.107 55.000 0.00 0.00 0.00 6.13
789 879 2.222027 GTATTCAAGAATGGAGGGGCG 58.778 52.381 5.59 0.00 32.50 6.13
790 880 3.297134 TGTATTCAAGAATGGAGGGGC 57.703 47.619 5.59 0.00 32.50 5.80
791 881 3.571401 GCATGTATTCAAGAATGGAGGGG 59.429 47.826 5.59 0.00 32.50 4.79
792 882 4.467769 AGCATGTATTCAAGAATGGAGGG 58.532 43.478 5.59 0.00 32.50 4.30
793 883 6.320672 AGAAAGCATGTATTCAAGAATGGAGG 59.679 38.462 12.96 0.00 32.50 4.30
794 884 7.330900 AGAAAGCATGTATTCAAGAATGGAG 57.669 36.000 12.96 0.00 32.50 3.86
795 885 7.707624 AAGAAAGCATGTATTCAAGAATGGA 57.292 32.000 12.96 0.00 32.50 3.41
808 898 9.638176 ATTGGAATCTCTATAAAGAAAGCATGT 57.362 29.630 0.00 0.00 0.00 3.21
811 901 9.261180 CGTATTGGAATCTCTATAAAGAAAGCA 57.739 33.333 0.00 0.00 0.00 3.91
812 902 9.477484 TCGTATTGGAATCTCTATAAAGAAAGC 57.523 33.333 0.00 0.00 0.00 3.51
822 912 9.346005 TGTATGTACTTCGTATTGGAATCTCTA 57.654 33.333 0.00 0.00 0.00 2.43
823 913 8.234136 TGTATGTACTTCGTATTGGAATCTCT 57.766 34.615 0.00 0.00 0.00 3.10
824 914 8.350722 TCTGTATGTACTTCGTATTGGAATCTC 58.649 37.037 0.00 0.00 0.00 2.75
825 915 8.234136 TCTGTATGTACTTCGTATTGGAATCT 57.766 34.615 0.00 0.00 0.00 2.40
826 916 7.115095 GCTCTGTATGTACTTCGTATTGGAATC 59.885 40.741 0.00 0.00 0.00 2.52
827 917 6.924060 GCTCTGTATGTACTTCGTATTGGAAT 59.076 38.462 0.00 0.00 0.00 3.01
828 918 6.127563 TGCTCTGTATGTACTTCGTATTGGAA 60.128 38.462 0.00 0.00 0.00 3.53
829 919 5.358725 TGCTCTGTATGTACTTCGTATTGGA 59.641 40.000 0.00 0.00 0.00 3.53
830 920 5.588240 TGCTCTGTATGTACTTCGTATTGG 58.412 41.667 0.00 0.00 0.00 3.16
831 921 7.520119 TTTGCTCTGTATGTACTTCGTATTG 57.480 36.000 0.00 0.00 0.00 1.90
832 922 7.201410 CGTTTTGCTCTGTATGTACTTCGTATT 60.201 37.037 0.00 0.00 0.00 1.89
833 923 6.252869 CGTTTTGCTCTGTATGTACTTCGTAT 59.747 38.462 0.00 0.00 0.00 3.06
834 924 5.570206 CGTTTTGCTCTGTATGTACTTCGTA 59.430 40.000 0.00 0.00 0.00 3.43
835 925 4.384846 CGTTTTGCTCTGTATGTACTTCGT 59.615 41.667 0.00 0.00 0.00 3.85
836 926 4.619760 TCGTTTTGCTCTGTATGTACTTCG 59.380 41.667 0.00 0.00 0.00 3.79
837 927 6.648725 ATCGTTTTGCTCTGTATGTACTTC 57.351 37.500 0.00 0.00 0.00 3.01
838 928 8.718102 ATAATCGTTTTGCTCTGTATGTACTT 57.282 30.769 0.00 0.00 0.00 2.24
839 929 8.718102 AATAATCGTTTTGCTCTGTATGTACT 57.282 30.769 0.00 0.00 0.00 2.73
875 965 7.284716 CCCTCCGTTTCTAATATAAGCCTTTTT 59.715 37.037 0.00 0.00 0.00 1.94
891 981 1.138464 GGTCCATACTCCCTCCGTTTC 59.862 57.143 0.00 0.00 0.00 2.78
892 982 1.201424 GGTCCATACTCCCTCCGTTT 58.799 55.000 0.00 0.00 0.00 3.60
895 985 2.376695 TTAGGTCCATACTCCCTCCG 57.623 55.000 0.00 0.00 0.00 4.63
897 987 5.544176 TGATCATTTAGGTCCATACTCCCTC 59.456 44.000 0.00 0.00 0.00 4.30
899 989 5.825593 TGATCATTTAGGTCCATACTCCC 57.174 43.478 0.00 0.00 0.00 4.30
903 993 6.369065 GGTCGATTGATCATTTAGGTCCATAC 59.631 42.308 0.00 0.00 0.00 2.39
904 994 6.464222 GGTCGATTGATCATTTAGGTCCATA 58.536 40.000 0.00 0.00 0.00 2.74
905 995 5.308825 GGTCGATTGATCATTTAGGTCCAT 58.691 41.667 0.00 0.00 0.00 3.41
906 996 4.703897 GGTCGATTGATCATTTAGGTCCA 58.296 43.478 0.00 0.00 0.00 4.02
920 1016 0.930310 CCATGCAGTACGGTCGATTG 59.070 55.000 0.00 0.00 0.00 2.67
928 1032 1.831389 GCGCCATACCATGCAGTACG 61.831 60.000 0.00 0.00 0.00 3.67
956 1064 0.039527 CCCGCGCTTTGCTTTTAGTT 60.040 50.000 5.56 0.00 43.27 2.24
1071 1208 3.623703 CGGAGAAGAGGAAGAGGAAGAGA 60.624 52.174 0.00 0.00 0.00 3.10
1110 1267 3.461773 GAGCTAGCAGTGGCCGGA 61.462 66.667 18.83 0.00 42.56 5.14
1111 1268 4.537433 GGAGCTAGCAGTGGCCGG 62.537 72.222 18.83 0.00 42.56 6.13
1112 1269 4.880537 CGGAGCTAGCAGTGGCCG 62.881 72.222 18.83 16.51 42.56 6.13
1113 1270 3.461773 TCGGAGCTAGCAGTGGCC 61.462 66.667 18.83 8.81 42.56 5.36
1114 1271 2.202810 GTCGGAGCTAGCAGTGGC 60.203 66.667 18.83 2.99 41.61 5.01
1117 1274 2.045242 TCCGTCGGAGCTAGCAGT 60.045 61.111 18.83 0.00 0.00 4.40
1132 1289 5.181433 TCATGCACGTATCTATGTAGACTCC 59.819 44.000 0.00 0.00 34.72 3.85
1135 1292 5.802451 CCATCATGCACGTATCTATGTAGAC 59.198 44.000 0.00 0.00 34.72 2.59
1141 1304 2.610433 CGCCATCATGCACGTATCTAT 58.390 47.619 0.00 0.00 0.00 1.98
1144 1307 1.862123 CCGCCATCATGCACGTATC 59.138 57.895 0.00 0.00 0.00 2.24
1386 1549 1.377333 GTGCTTGCTGGGGTACTCC 60.377 63.158 4.21 4.21 0.00 3.85
1397 1560 2.551270 CGACGAACTGGTGCTTGC 59.449 61.111 0.00 0.00 0.00 4.01
1518 1681 4.773117 GTGTCGTCGTCGGAGGCC 62.773 72.222 0.00 0.00 37.69 5.19
1833 2011 4.821589 CGGAGCAGGAAGACGGCC 62.822 72.222 0.00 0.00 41.55 6.13
2057 2235 4.918201 CGCCGGCCTCCATCCTTC 62.918 72.222 23.46 0.00 0.00 3.46
2198 2377 9.415008 ACTGTATAATCTATAGCATGTAGGAGG 57.585 37.037 0.00 0.00 0.00 4.30
2219 2399 9.322773 CAGCTACTAGTGTGTAGTATAACTGTA 57.677 37.037 5.39 0.00 41.27 2.74
2220 2400 7.282675 CCAGCTACTAGTGTGTAGTATAACTGT 59.717 40.741 5.39 0.00 41.27 3.55
2221 2401 7.282675 ACCAGCTACTAGTGTGTAGTATAACTG 59.717 40.741 5.39 0.00 41.27 3.16
2222 2402 7.282675 CACCAGCTACTAGTGTGTAGTATAACT 59.717 40.741 5.39 0.00 41.27 2.24
2223 2403 7.416022 CACCAGCTACTAGTGTGTAGTATAAC 58.584 42.308 5.39 0.00 41.27 1.89
2224 2404 6.544931 CCACCAGCTACTAGTGTGTAGTATAA 59.455 42.308 5.39 0.00 41.27 0.98
2225 2405 6.060136 CCACCAGCTACTAGTGTGTAGTATA 58.940 44.000 5.39 0.00 41.27 1.47
2226 2406 4.888239 CCACCAGCTACTAGTGTGTAGTAT 59.112 45.833 5.39 0.00 41.27 2.12
2227 2407 4.263639 ACCACCAGCTACTAGTGTGTAGTA 60.264 45.833 5.39 0.00 41.27 1.82
2228 2408 3.090037 CCACCAGCTACTAGTGTGTAGT 58.910 50.000 5.39 0.00 41.27 2.73
2229 2409 3.090037 ACCACCAGCTACTAGTGTGTAG 58.910 50.000 5.39 0.00 41.91 2.74
2230 2410 3.087031 GACCACCAGCTACTAGTGTGTA 58.913 50.000 5.39 0.00 0.00 2.90
2231 2411 1.893801 GACCACCAGCTACTAGTGTGT 59.106 52.381 5.39 0.00 0.00 3.72
2232 2412 2.171840 AGACCACCAGCTACTAGTGTG 58.828 52.381 5.39 4.45 0.00 3.82
2233 2413 2.606751 AGACCACCAGCTACTAGTGT 57.393 50.000 5.39 0.00 0.00 3.55
2234 2414 3.622630 ACTAGACCACCAGCTACTAGTG 58.377 50.000 5.39 0.00 41.05 2.74
2235 2415 3.524380 AGACTAGACCACCAGCTACTAGT 59.476 47.826 0.00 0.00 43.86 2.57
2236 2416 4.159244 AGACTAGACCACCAGCTACTAG 57.841 50.000 0.00 0.00 37.25 2.57
2237 2417 4.720773 ACTAGACTAGACCACCAGCTACTA 59.279 45.833 16.55 0.00 0.00 1.82
2238 2418 3.524380 ACTAGACTAGACCACCAGCTACT 59.476 47.826 16.55 0.00 0.00 2.57
2239 2419 3.888583 ACTAGACTAGACCACCAGCTAC 58.111 50.000 16.55 0.00 0.00 3.58
2240 2420 4.587976 AACTAGACTAGACCACCAGCTA 57.412 45.455 16.55 0.00 0.00 3.32
2241 2421 3.459710 AACTAGACTAGACCACCAGCT 57.540 47.619 16.55 0.00 0.00 4.24
2242 2422 5.474189 CCTATAACTAGACTAGACCACCAGC 59.526 48.000 16.55 0.00 0.00 4.85
2243 2423 6.839454 TCCTATAACTAGACTAGACCACCAG 58.161 44.000 16.55 5.37 0.00 4.00
2244 2424 6.836714 TCCTATAACTAGACTAGACCACCA 57.163 41.667 16.55 0.00 0.00 4.17
2245 2425 9.978336 AATATCCTATAACTAGACTAGACCACC 57.022 37.037 16.55 0.00 0.00 4.61
2265 2445 7.711339 ACTGCTAAGTGCTAACTAACAATATCC 59.289 37.037 0.00 0.00 43.37 2.59
2284 2464 9.871238 CAACTAAATTAAGACTCCTACTGCTAA 57.129 33.333 0.00 0.00 0.00 3.09
2295 2475 9.013229 TGATGAATGTGCAACTAAATTAAGACT 57.987 29.630 0.00 0.00 38.04 3.24
2366 2564 5.348986 TGTGGATTAGCTTGACGATAAGAC 58.651 41.667 0.00 0.66 0.00 3.01
2405 2603 7.340232 ACAATGCATTCCACACTAACTAATCAT 59.660 33.333 9.53 0.00 0.00 2.45
2475 2678 4.883083 TGTCTCTGTCAGTGTATTTGTCC 58.117 43.478 0.00 0.00 0.00 4.02
2481 2684 5.127845 CACCCTTATGTCTCTGTCAGTGTAT 59.872 44.000 0.00 0.70 0.00 2.29
2482 2685 4.462834 CACCCTTATGTCTCTGTCAGTGTA 59.537 45.833 0.00 0.00 0.00 2.90
2568 2782 9.764870 CGATTAGCATGATGTAATTATGAAAGG 57.235 33.333 0.00 0.00 42.41 3.11
2581 2836 7.978414 ACAGATATCTAACCGATTAGCATGATG 59.022 37.037 4.54 0.00 38.18 3.07
2582 2837 8.072321 ACAGATATCTAACCGATTAGCATGAT 57.928 34.615 4.54 0.00 38.18 2.45
2585 2851 7.671302 ACAACAGATATCTAACCGATTAGCAT 58.329 34.615 4.54 0.00 38.18 3.79
2595 2861 5.065218 CCCTGCACAACAACAGATATCTAAC 59.935 44.000 4.54 0.00 35.90 2.34
2599 2865 3.609853 TCCCTGCACAACAACAGATATC 58.390 45.455 0.00 0.00 35.90 1.63
2600 2866 3.719268 TCCCTGCACAACAACAGATAT 57.281 42.857 0.00 0.00 35.90 1.63
2603 2869 1.679139 CTTCCCTGCACAACAACAGA 58.321 50.000 0.00 0.00 35.90 3.41
2611 2893 1.301716 GAAGTCGCTTCCCTGCACA 60.302 57.895 7.98 0.00 34.71 4.57
2692 2974 0.179134 GCGTGAAGCCGACAGAGTAT 60.179 55.000 0.00 0.00 40.81 2.12
2728 3010 3.404141 GACAGCGTCGAGGGAGAGC 62.404 68.421 7.31 0.00 0.00 4.09
2768 3050 2.431942 CGTGGTGTGGTACTCGGC 60.432 66.667 0.00 0.00 0.00 5.54
2801 3083 0.107993 ACCATAGAGGACGACGACGA 60.108 55.000 15.32 0.00 40.20 4.20
2813 3095 0.958382 GTTGGTTGCGGCACCATAGA 60.958 55.000 19.89 7.45 46.60 1.98
2815 3097 1.228276 TGTTGGTTGCGGCACCATA 60.228 52.632 19.89 12.27 46.60 2.74
2816 3098 2.520500 TGTTGGTTGCGGCACCAT 60.521 55.556 19.89 0.00 46.60 3.55
2819 3101 2.026014 CTGTGTTGGTTGCGGCAC 59.974 61.111 0.05 0.00 0.00 5.01
2820 3102 3.898509 GCTGTGTTGGTTGCGGCA 61.899 61.111 0.00 0.00 34.85 5.69
2821 3103 3.595758 AGCTGTGTTGGTTGCGGC 61.596 61.111 0.00 0.00 34.94 6.53
2822 3104 2.332514 CAGCTGTGTTGGTTGCGG 59.667 61.111 5.25 0.00 0.00 5.69
2823 3105 2.332514 CCAGCTGTGTTGGTTGCG 59.667 61.111 13.81 0.00 0.00 4.85
2824 3106 1.066257 CACCAGCTGTGTTGGTTGC 59.934 57.895 13.81 0.00 44.47 4.17
2868 3150 3.689347 TGTTGGTTCAGGATTCAGGATG 58.311 45.455 0.00 0.00 37.54 3.51
2895 3177 1.440145 GCTCTGGCCTTCCGTATTGC 61.440 60.000 3.32 0.00 34.14 3.56
2896 3178 0.107703 TGCTCTGGCCTTCCGTATTG 60.108 55.000 3.32 0.00 37.74 1.90
2897 3179 0.839946 ATGCTCTGGCCTTCCGTATT 59.160 50.000 3.32 0.00 37.74 1.89
2898 3180 0.107456 CATGCTCTGGCCTTCCGTAT 59.893 55.000 3.32 0.00 37.74 3.06
2901 3183 2.335092 ATCCATGCTCTGGCCTTCCG 62.335 60.000 3.32 0.00 45.52 4.30
2902 3184 0.536915 GATCCATGCTCTGGCCTTCC 60.537 60.000 3.32 0.00 45.52 3.46
2903 3185 0.473326 AGATCCATGCTCTGGCCTTC 59.527 55.000 3.32 0.00 45.52 3.46
2904 3186 0.183014 CAGATCCATGCTCTGGCCTT 59.817 55.000 3.32 0.00 45.52 4.35
2905 3187 0.693430 TCAGATCCATGCTCTGGCCT 60.693 55.000 18.21 0.00 45.52 5.19
2906 3188 0.182061 TTCAGATCCATGCTCTGGCC 59.818 55.000 18.21 0.00 45.52 5.36
2907 3189 1.595466 CTTCAGATCCATGCTCTGGC 58.405 55.000 18.21 0.00 45.52 4.85
2909 3191 1.595466 GGCTTCAGATCCATGCTCTG 58.405 55.000 14.29 14.29 41.23 3.35
2910 3192 0.106335 CGGCTTCAGATCCATGCTCT 59.894 55.000 0.00 0.00 0.00 4.09
2911 3193 0.883814 CCGGCTTCAGATCCATGCTC 60.884 60.000 0.00 0.00 0.00 4.26
2912 3194 1.147824 CCGGCTTCAGATCCATGCT 59.852 57.895 0.00 0.00 0.00 3.79
3005 3306 1.014044 TCGAACCATTCAGCGACAGC 61.014 55.000 0.00 0.00 45.58 4.40
3014 3315 1.587547 GATGGCCTCTCGAACCATTC 58.412 55.000 3.32 2.18 44.20 2.67
3029 3330 4.704833 CCGGCCGGCTATGGATGG 62.705 72.222 34.96 12.74 0.00 3.51
3030 3331 3.596066 CTCCGGCCGGCTATGGATG 62.596 68.421 39.89 18.59 34.68 3.51
3031 3332 3.314331 CTCCGGCCGGCTATGGAT 61.314 66.667 39.89 0.00 34.68 3.41
3032 3333 4.853142 ACTCCGGCCGGCTATGGA 62.853 66.667 39.89 27.22 34.68 3.41
3033 3334 4.609018 CACTCCGGCCGGCTATGG 62.609 72.222 39.89 25.35 34.68 2.74
3042 3343 1.257743 TCTATCTATGGCACTCCGGC 58.742 55.000 0.00 0.00 41.67 6.13
3070 3371 1.226859 TTGTCGATCGATCCGGTGC 60.227 57.895 22.50 6.89 0.00 5.01
3082 3383 9.970395 TCTTTCTTACTGTTAATAAGTTGTCGA 57.030 29.630 0.00 0.00 32.46 4.20
3100 3401 4.974645 TGGGCTCTGTCTTTCTTTCTTA 57.025 40.909 0.00 0.00 0.00 2.10
3136 3445 2.910994 GCAGATGCAGGGCCCATC 60.911 66.667 27.56 18.65 41.59 3.51
3153 3462 2.438763 AGAAGATGATCCTGCCTTCCTG 59.561 50.000 0.00 0.00 36.57 3.86
3154 3463 2.705127 GAGAAGATGATCCTGCCTTCCT 59.295 50.000 0.00 0.00 36.57 3.36
3156 3465 2.224499 GGGAGAAGATGATCCTGCCTTC 60.224 54.545 2.77 0.00 35.80 3.46
3226 3551 7.013464 ACAGTCACCGATTTATTACAACCAAAA 59.987 33.333 0.00 0.00 0.00 2.44
3229 3554 5.410132 CACAGTCACCGATTTATTACAACCA 59.590 40.000 0.00 0.00 0.00 3.67
3231 3556 5.121768 AGCACAGTCACCGATTTATTACAAC 59.878 40.000 0.00 0.00 0.00 3.32
3235 3564 4.629634 CACAGCACAGTCACCGATTTATTA 59.370 41.667 0.00 0.00 0.00 0.98
3244 3573 1.742761 ATATGCACAGCACAGTCACC 58.257 50.000 0.00 0.00 43.04 4.02
3256 3585 4.458295 AGCATCCAGCAGATTTATATGCAC 59.542 41.667 11.44 0.00 46.75 4.57
3270 3610 2.113433 CAGGTCAGCAGCATCCAGC 61.113 63.158 0.00 0.00 46.19 4.85
3272 3612 2.045634 GCAGGTCAGCAGCATCCA 60.046 61.111 0.00 0.00 0.00 3.41
3273 3613 2.045634 TGCAGGTCAGCAGCATCC 60.046 61.111 0.00 0.00 40.11 3.51
3274 3614 3.185155 GTGCAGGTCAGCAGCATC 58.815 61.111 0.00 0.00 46.69 3.91
3300 3644 4.469227 AGCTAGGTCACTCTCATTGTGAAT 59.531 41.667 0.00 0.00 44.63 2.57
3301 3645 3.834813 AGCTAGGTCACTCTCATTGTGAA 59.165 43.478 0.00 0.00 44.63 3.18
3302 3646 3.435275 AGCTAGGTCACTCTCATTGTGA 58.565 45.455 0.00 0.00 41.48 3.58
3303 3647 3.883830 AGCTAGGTCACTCTCATTGTG 57.116 47.619 0.00 0.00 36.82 3.33
3304 3648 3.834813 TCAAGCTAGGTCACTCTCATTGT 59.165 43.478 0.00 0.00 0.00 2.71
3305 3649 4.462508 TCAAGCTAGGTCACTCTCATTG 57.537 45.455 0.00 0.00 0.00 2.82
3348 3693 2.244695 TCATACAACCTCCTGTCACGT 58.755 47.619 0.00 0.00 0.00 4.49
3349 3694 3.526931 ATCATACAACCTCCTGTCACG 57.473 47.619 0.00 0.00 0.00 4.35
3350 3695 3.941483 CCAATCATACAACCTCCTGTCAC 59.059 47.826 0.00 0.00 0.00 3.67
3351 3696 3.587061 ACCAATCATACAACCTCCTGTCA 59.413 43.478 0.00 0.00 0.00 3.58
3352 3697 3.941483 CACCAATCATACAACCTCCTGTC 59.059 47.826 0.00 0.00 0.00 3.51
3410 3755 3.198853 AGAGGGAGTTGATTTGTAGCTCC 59.801 47.826 0.00 0.00 42.72 4.70
3411 3756 4.161377 AGAGAGGGAGTTGATTTGTAGCTC 59.839 45.833 0.00 0.00 0.00 4.09
3412 3757 4.100373 AGAGAGGGAGTTGATTTGTAGCT 58.900 43.478 0.00 0.00 0.00 3.32
3413 3758 4.161377 AGAGAGAGGGAGTTGATTTGTAGC 59.839 45.833 0.00 0.00 0.00 3.58
3416 3761 4.424842 AGAGAGAGAGGGAGTTGATTTGT 58.575 43.478 0.00 0.00 0.00 2.83
3473 3820 0.800239 TCCCTCCTTCCTTCCTTCCT 59.200 55.000 0.00 0.00 0.00 3.36
3477 3824 1.031112 ATCCTCCCTCCTTCCTTCCT 58.969 55.000 0.00 0.00 0.00 3.36
3479 3826 1.886422 ACATCCTCCCTCCTTCCTTC 58.114 55.000 0.00 0.00 0.00 3.46
3480 3827 2.961977 GCTACATCCTCCCTCCTTCCTT 60.962 54.545 0.00 0.00 0.00 3.36
3481 3828 1.413808 GCTACATCCTCCCTCCTTCCT 60.414 57.143 0.00 0.00 0.00 3.36
3482 3829 1.052617 GCTACATCCTCCCTCCTTCC 58.947 60.000 0.00 0.00 0.00 3.46
3483 3830 1.691434 CTGCTACATCCTCCCTCCTTC 59.309 57.143 0.00 0.00 0.00 3.46
3489 3836 0.105778 GCAGTCTGCTACATCCTCCC 59.894 60.000 17.89 0.00 40.96 4.30
3500 3847 1.849976 AAAGCAAGCGAGCAGTCTGC 61.850 55.000 17.48 17.48 45.46 4.26
3501 3848 0.110328 CAAAGCAAGCGAGCAGTCTG 60.110 55.000 6.21 0.00 36.85 3.51
3502 3849 1.233285 CCAAAGCAAGCGAGCAGTCT 61.233 55.000 6.21 0.00 36.85 3.24
3503 3850 1.208614 CCAAAGCAAGCGAGCAGTC 59.791 57.895 6.21 0.00 36.85 3.51
3504 3851 1.526917 ACCAAAGCAAGCGAGCAGT 60.527 52.632 6.21 0.00 36.85 4.40
3505 3852 1.081641 CACCAAAGCAAGCGAGCAG 60.082 57.895 6.21 0.00 36.85 4.24
3506 3853 3.033184 CACCAAAGCAAGCGAGCA 58.967 55.556 6.21 0.00 36.85 4.26
3510 3857 1.005867 AATGGCACCAAAGCAAGCG 60.006 52.632 0.00 0.00 35.83 4.68
3537 3884 3.055963 ACGTACGTACCCAAATCAATGGA 60.056 43.478 21.41 0.00 43.54 3.41
3538 3885 3.264104 ACGTACGTACCCAAATCAATGG 58.736 45.455 21.41 3.95 40.35 3.16
3587 3934 0.178990 AGGCCAACAGGAACAGGAAC 60.179 55.000 5.01 0.00 0.00 3.62
3590 3937 2.270986 GCAGGCCAACAGGAACAGG 61.271 63.158 5.01 0.00 0.00 4.00
3591 3938 1.228367 AGCAGGCCAACAGGAACAG 60.228 57.895 5.01 0.00 0.00 3.16
3594 3941 1.108727 CAACAGCAGGCCAACAGGAA 61.109 55.000 5.01 0.00 0.00 3.36
3598 3945 0.537143 CCTACAACAGCAGGCCAACA 60.537 55.000 5.01 0.00 0.00 3.33
3599 3946 0.537371 ACCTACAACAGCAGGCCAAC 60.537 55.000 5.01 0.00 35.14 3.77
3601 3948 0.613260 CTACCTACAACAGCAGGCCA 59.387 55.000 5.01 0.00 35.14 5.36
3602 3949 0.107654 CCTACCTACAACAGCAGGCC 60.108 60.000 0.00 0.00 35.14 5.19
3603 3950 0.107654 CCCTACCTACAACAGCAGGC 60.108 60.000 0.00 0.00 35.14 4.85
3604 3951 1.066143 CACCCTACCTACAACAGCAGG 60.066 57.143 0.00 0.00 37.97 4.85
3605 3952 1.676014 GCACCCTACCTACAACAGCAG 60.676 57.143 0.00 0.00 0.00 4.24
3606 3953 0.323629 GCACCCTACCTACAACAGCA 59.676 55.000 0.00 0.00 0.00 4.41
3607 3954 0.613777 AGCACCCTACCTACAACAGC 59.386 55.000 0.00 0.00 0.00 4.40
3608 3955 1.207329 GGAGCACCCTACCTACAACAG 59.793 57.143 0.00 0.00 0.00 3.16
3609 3956 1.272807 GGAGCACCCTACCTACAACA 58.727 55.000 0.00 0.00 0.00 3.33
3621 3968 0.466922 CCTGAATCCATGGGAGCACC 60.467 60.000 13.02 0.00 34.05 5.01
3622 3969 1.105759 GCCTGAATCCATGGGAGCAC 61.106 60.000 13.02 0.33 34.05 4.40
3623 3970 1.228228 GCCTGAATCCATGGGAGCA 59.772 57.895 13.02 6.54 34.05 4.26
3678 4027 6.644592 GGGTACATACGTACTGTACTAGAGAG 59.355 46.154 27.87 2.14 46.15 3.20
3712 4061 9.687210 ACAATCATAATCATTGTACGTACGTAT 57.313 29.630 29.05 13.54 41.68 3.06
3737 4093 3.648339 TTAACTGACGGACTGTACCAC 57.352 47.619 0.00 0.00 0.00 4.16
3778 4134 3.242641 CGGCTGATGATGATCTGTTTGTG 60.243 47.826 1.36 0.00 31.71 3.33
3800 4156 1.000955 AGTGCAGTGCAGTGGTAGTAC 59.999 52.381 24.51 6.56 41.01 2.73
3843 4199 4.066139 ATCCTTGGTGGGCTGGGC 62.066 66.667 0.00 0.00 36.20 5.36
3844 4200 2.276740 GATCCTTGGTGGGCTGGG 59.723 66.667 0.00 0.00 36.20 4.45
3845 4201 1.077212 CTGATCCTTGGTGGGCTGG 60.077 63.158 0.00 0.00 36.20 4.85
3846 4202 1.751927 GCTGATCCTTGGTGGGCTG 60.752 63.158 0.00 0.00 36.20 4.85
3847 4203 1.578215 ATGCTGATCCTTGGTGGGCT 61.578 55.000 0.00 0.00 36.20 5.19
3848 4204 1.076485 ATGCTGATCCTTGGTGGGC 60.076 57.895 0.00 0.00 36.20 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.