Multiple sequence alignment - TraesCS5B01G566100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G566100 chr5B 100.000 4618 0 0 1 4618 710613803 710609186 0.000000e+00 8528.0
1 TraesCS5B01G566100 chr5B 79.343 426 61 15 4201 4614 711857918 711858328 1.640000e-69 274.0
2 TraesCS5B01G566100 chr5B 90.411 146 13 1 3167 3312 553578914 553578770 1.700000e-44 191.0
3 TraesCS5B01G566100 chr5D 88.548 1240 51 40 2738 3947 560227315 560226137 0.000000e+00 1419.0
4 TraesCS5B01G566100 chr5D 80.970 1340 91 76 746 2021 560228724 560227485 0.000000e+00 911.0
5 TraesCS5B01G566100 chr5D 89.145 433 25 10 4186 4618 560225952 560225542 1.900000e-143 520.0
6 TraesCS5B01G566100 chr5D 82.602 615 44 23 1 574 560229323 560228731 6.950000e-133 484.0
7 TraesCS5B01G566100 chr5D 83.742 326 38 10 4306 4618 557578214 557577891 1.260000e-75 294.0
8 TraesCS5B01G566100 chr5D 91.781 146 11 1 3167 3312 107312960 107312816 7.830000e-48 202.0
9 TraesCS5B01G566100 chr5D 85.561 187 20 4 2757 2941 107313152 107312971 6.100000e-44 189.0
10 TraesCS5B01G566100 chr5D 89.231 130 12 1 576 705 544234811 544234684 1.330000e-35 161.0
11 TraesCS5B01G566100 chr5D 86.047 129 16 1 576 704 447459716 447459590 2.240000e-28 137.0
12 TraesCS5B01G566100 chr5D 91.935 62 1 1 1963 2020 107313327 107313266 2.960000e-12 84.2
13 TraesCS5B01G566100 chr4A 85.524 1278 77 50 2579 3773 604102499 604103751 0.000000e+00 1236.0
14 TraesCS5B01G566100 chr4A 92.396 434 32 1 4185 4618 604104101 604104533 6.560000e-173 617.0
15 TraesCS5B01G566100 chr4A 81.841 391 49 10 4231 4610 663695083 663695462 4.490000e-80 309.0
16 TraesCS5B01G566100 chr4A 83.110 373 13 15 3835 4179 604103776 604104126 1.260000e-75 294.0
17 TraesCS5B01G566100 chr4A 77.427 412 53 32 1001 1391 604101314 604101706 4.680000e-50 209.0
18 TraesCS5B01G566100 chr4A 88.889 63 4 3 1828 1889 604102286 604102346 1.780000e-09 75.0
19 TraesCS5B01G566100 chr4A 84.507 71 10 1 505 574 547518896 547518966 8.290000e-08 69.4
20 TraesCS5B01G566100 chr3D 83.678 435 57 8 4184 4615 529495410 529495833 9.310000e-107 398.0
21 TraesCS5B01G566100 chr3D 82.176 432 66 6 4184 4615 529502688 529503108 1.220000e-95 361.0
22 TraesCS5B01G566100 chr3D 93.805 226 12 2 2208 2433 116246190 116246413 5.720000e-89 339.0
23 TraesCS5B01G566100 chr3D 91.949 236 15 4 2200 2433 40736060 40735827 1.240000e-85 327.0
24 TraesCS5B01G566100 chr3B 83.102 432 60 7 4186 4614 700072236 700072657 9.380000e-102 381.0
25 TraesCS5B01G566100 chr3B 92.952 227 14 2 2207 2433 295124364 295124140 3.440000e-86 329.0
26 TraesCS5B01G566100 chr3B 81.356 413 68 5 4203 4615 700235901 700235498 1.240000e-85 327.0
27 TraesCS5B01G566100 chr3B 94.271 192 11 0 2016 2207 143162005 143161814 1.260000e-75 294.0
28 TraesCS5B01G566100 chr3B 97.143 140 4 0 2442 2581 143161816 143161677 2.150000e-58 237.0
29 TraesCS5B01G566100 chr3B 95.035 141 7 0 2442 2582 747709497 747709637 6.010000e-54 222.0
30 TraesCS5B01G566100 chr3B 94.286 140 8 0 2018 2157 747709034 747709173 1.010000e-51 215.0
31 TraesCS5B01G566100 chr3B 86.992 123 14 1 583 705 471484336 471484216 2.240000e-28 137.0
32 TraesCS5B01G566100 chr3B 85.938 64 7 2 516 577 746018981 746018918 2.980000e-07 67.6
33 TraesCS5B01G566100 chr4B 96.476 227 7 1 2207 2433 50464588 50464363 1.570000e-99 374.0
34 TraesCS5B01G566100 chr4B 88.525 61 5 2 516 574 44252485 44252425 6.410000e-09 73.1
35 TraesCS5B01G566100 chr4B 88.525 61 5 2 516 574 622189812 622189752 6.410000e-09 73.1
36 TraesCS5B01G566100 chr4B 88.525 61 5 2 516 574 654471062 654471122 6.410000e-09 73.1
37 TraesCS5B01G566100 chr3A 82.719 434 61 8 4184 4614 663440712 663441134 1.570000e-99 374.0
38 TraesCS5B01G566100 chr3A 82.407 432 65 6 4184 4615 663450854 663451274 2.630000e-97 366.0
39 TraesCS5B01G566100 chr3A 93.833 227 13 1 2207 2433 430763702 430763477 1.590000e-89 340.0
40 TraesCS5B01G566100 chr3A 87.407 135 15 1 571 705 209641807 209641939 2.230000e-33 154.0
41 TraesCS5B01G566100 chr4D 94.690 226 11 1 2208 2433 484039499 484039275 2.640000e-92 350.0
42 TraesCS5B01G566100 chr4D 84.946 93 14 0 4523 4615 3260028 3260120 1.370000e-15 95.3
43 TraesCS5B01G566100 chr2D 94.222 225 12 1 2207 2431 125684312 125684089 4.420000e-90 342.0
44 TraesCS5B01G566100 chr2D 92.952 227 15 1 2207 2433 562807056 562807281 3.440000e-86 329.0
45 TraesCS5B01G566100 chr2D 81.206 431 51 15 4199 4614 13771290 13770875 2.070000e-83 320.0
46 TraesCS5B01G566100 chr2D 83.764 271 22 8 4358 4608 13723311 13723579 2.150000e-58 237.0
47 TraesCS5B01G566100 chr2D 89.305 187 13 3 2757 2941 72815734 72815915 1.290000e-55 228.0
48 TraesCS5B01G566100 chr2D 88.398 181 14 4 2762 2940 254761926 254761751 1.300000e-50 211.0
49 TraesCS5B01G566100 chr2D 92.466 146 10 1 3167 3312 72815926 72816070 1.680000e-49 207.0
50 TraesCS5B01G566100 chr2D 80.586 273 38 9 4358 4615 589502674 589502946 3.650000e-46 196.0
51 TraesCS5B01G566100 chr2D 85.714 112 8 6 2582 2686 254762047 254761937 1.360000e-20 111.0
52 TraesCS5B01G566100 chr2D 90.323 62 2 1 1963 2020 254762106 254762045 1.380000e-10 78.7
53 TraesCS5B01G566100 chr2D 91.071 56 1 1 1963 2014 72815559 72815614 6.410000e-09 73.1
54 TraesCS5B01G566100 chr7A 81.265 427 56 10 4196 4610 51661420 51661834 1.600000e-84 324.0
55 TraesCS5B01G566100 chr7A 88.235 187 15 4 2757 2941 70102734 70102915 2.800000e-52 217.0
56 TraesCS5B01G566100 chr7A 91.034 145 12 1 3167 3311 70102926 70103069 1.310000e-45 195.0
57 TraesCS5B01G566100 chr7A 84.848 132 18 1 574 705 50570371 50570500 1.040000e-26 132.0
58 TraesCS5B01G566100 chr7A 83.333 138 20 2 576 712 624205383 624205518 1.740000e-24 124.0
59 TraesCS5B01G566100 chr7A 87.500 112 6 6 2582 2686 70102618 70102728 6.270000e-24 122.0
60 TraesCS5B01G566100 chr7D 81.106 434 53 16 4196 4610 48823798 48824221 2.070000e-83 320.0
61 TraesCS5B01G566100 chr7D 83.088 272 32 6 4360 4618 552325965 552325695 7.720000e-58 235.0
62 TraesCS5B01G566100 chr7D 89.130 184 14 3 2759 2941 593568688 593568866 1.670000e-54 224.0
63 TraesCS5B01G566100 chr7D 91.096 146 11 2 3168 3312 593568877 593569021 3.650000e-46 196.0
64 TraesCS5B01G566100 chr7D 84.615 130 18 1 571 700 466822360 466822233 1.350000e-25 128.0
65 TraesCS5B01G566100 chr7D 86.607 112 7 6 2582 2686 593568570 593568680 2.920000e-22 117.0
66 TraesCS5B01G566100 chr7D 90.323 62 2 1 1963 2020 593568511 593568572 1.380000e-10 78.7
67 TraesCS5B01G566100 chr1D 92.070 227 17 1 2207 2433 418272078 418272303 7.460000e-83 318.0
68 TraesCS5B01G566100 chr2A 79.953 429 60 13 4199 4614 15960876 15960461 4.520000e-75 292.0
69 TraesCS5B01G566100 chr2A 89.726 146 13 2 3167 3312 82804558 82804415 7.890000e-43 185.0
70 TraesCS5B01G566100 chr2A 87.218 133 13 3 575 706 687286572 687286701 1.040000e-31 148.0
71 TraesCS5B01G566100 chr2A 86.822 129 15 1 576 704 140506711 140506585 4.820000e-30 143.0
72 TraesCS5B01G566100 chr5A 93.264 193 13 0 2015 2207 280769044 280769236 7.560000e-73 285.0
73 TraesCS5B01G566100 chr5A 94.245 139 8 0 2442 2580 280769234 280769372 3.620000e-51 213.0
74 TraesCS5B01G566100 chr2B 92.632 190 14 0 2018 2207 115885039 115884850 1.640000e-69 274.0
75 TraesCS5B01G566100 chr2B 95.706 163 7 0 2045 2207 699069297 699069459 3.540000e-66 263.0
76 TraesCS5B01G566100 chr2B 97.143 140 4 0 2442 2581 115884852 115884713 2.150000e-58 237.0
77 TraesCS5B01G566100 chr2B 97.122 139 4 0 2442 2580 699069457 699069595 7.720000e-58 235.0
78 TraesCS5B01G566100 chr2B 91.781 146 11 1 3167 3312 755390486 755390342 7.830000e-48 202.0
79 TraesCS5B01G566100 chr2B 84.375 64 8 2 516 577 180463350 180463287 1.390000e-05 62.1
80 TraesCS5B01G566100 chrUn 79.885 348 43 21 4282 4614 28782449 28782114 3.590000e-56 230.0
81 TraesCS5B01G566100 chrUn 91.781 146 11 1 3167 3312 184900984 184901128 7.830000e-48 202.0
82 TraesCS5B01G566100 chrUn 88.742 151 10 4 2793 2941 184900828 184900973 1.320000e-40 178.0
83 TraesCS5B01G566100 chrUn 88.966 145 15 1 3167 3311 343091746 343091603 1.320000e-40 178.0
84 TraesCS5B01G566100 chrUn 88.889 144 15 1 3167 3310 343094210 343094068 4.750000e-40 176.0
85 TraesCS5B01G566100 chrUn 88.356 146 16 1 3167 3312 227525657 227525801 1.710000e-39 174.0
86 TraesCS5B01G566100 chrUn 88.079 151 11 4 2793 2941 218749134 218748989 6.140000e-39 172.0
87 TraesCS5B01G566100 chrUn 88.079 151 11 4 2793 2941 343094366 343094221 6.140000e-39 172.0
88 TraesCS5B01G566100 chrUn 87.417 151 12 4 2793 2941 227525501 227525646 2.860000e-37 167.0
89 TraesCS5B01G566100 chrUn 87.417 151 12 4 2793 2941 343091902 343091757 2.860000e-37 167.0
90 TraesCS5B01G566100 chrUn 88.525 61 5 2 516 574 12153747 12153807 6.410000e-09 73.1
91 TraesCS5B01G566100 chrUn 88.525 61 5 2 516 574 285689897 285689957 6.410000e-09 73.1
92 TraesCS5B01G566100 chr6A 87.701 187 16 3 2757 2941 376696249 376696430 1.300000e-50 211.0
93 TraesCS5B01G566100 chr6A 90.972 144 12 1 3167 3310 376696441 376696583 4.720000e-45 193.0
94 TraesCS5B01G566100 chr6A 85.217 115 10 5 2577 2686 376696131 376696243 1.360000e-20 111.0
95 TraesCS5B01G566100 chr1A 87.097 186 16 5 2759 2941 425422680 425422860 2.180000e-48 204.0
96 TraesCS5B01G566100 chr1A 90.411 146 13 1 3167 3312 425422871 425423015 1.700000e-44 191.0
97 TraesCS5B01G566100 chr1A 85.714 112 8 6 2582 2686 425422562 425422672 1.360000e-20 111.0
98 TraesCS5B01G566100 chr1A 92.958 71 5 0 4527 4597 12356057 12355987 2.270000e-18 104.0
99 TraesCS5B01G566100 chr6D 86.364 176 15 6 2762 2934 459678769 459678600 2.840000e-42 183.0
100 TraesCS5B01G566100 chr6D 86.364 132 14 3 576 705 350563777 350563906 1.730000e-29 141.0
101 TraesCS5B01G566100 chr6D 88.172 93 6 3 2598 2686 459678871 459678780 6.320000e-19 106.0
102 TraesCS5B01G566100 chr7B 92.857 70 3 2 2522 2590 302294831 302294899 2.940000e-17 100.0
103 TraesCS5B01G566100 chr7B 84.932 73 7 4 505 574 255050759 255050688 2.310000e-08 71.3
104 TraesCS5B01G566100 chr6B 88.710 62 5 2 515 574 529368428 529368367 1.780000e-09 75.0
105 TraesCS5B01G566100 chr1B 88.525 61 5 2 516 574 411199042 411198982 6.410000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G566100 chr5B 710609186 710613803 4617 True 8528.0 8528 100.00000 1 4618 1 chr5B.!!$R2 4617
1 TraesCS5B01G566100 chr5D 560225542 560229323 3781 True 833.5 1419 85.31625 1 4618 4 chr5D.!!$R5 4617
2 TraesCS5B01G566100 chr4A 604101314 604104533 3219 False 486.2 1236 85.46920 1001 4618 5 chr4A.!!$F3 3617
3 TraesCS5B01G566100 chr3B 747709034 747709637 603 False 218.5 222 94.66050 2018 2582 2 chr3B.!!$F2 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1003 0.107752 GGAAGCAGAGCAAGGAGGAG 60.108 60.0 0.0 0.0 0.00 3.69 F
2189 2569 0.030638 AGCACGAAACACATGCAACC 59.969 50.0 0.0 0.0 41.97 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2660 3174 0.101579 TGGCAATGCAGCATCATTCG 59.898 50.0 8.77 0.0 34.68 3.34 R
3968 4621 0.035725 TTCAGCTGGACATGCAGAGG 60.036 55.0 15.13 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.513680 ATTTAGCCACATGACGACGTA 57.486 42.857 0.00 0.00 0.00 3.57
59 60 6.569610 GCCAGATGACGAAATAAGTTTTTGGA 60.570 38.462 0.00 0.00 0.00 3.53
80 81 4.335594 GGAAAGGTCGGTGGATGAATTAAG 59.664 45.833 0.00 0.00 0.00 1.85
106 107 2.178580 TGAGGGGCCATTTAGCAAAAG 58.821 47.619 4.39 0.00 0.00 2.27
128 129 1.008309 GACGCTAGAGCCATCCGTC 60.008 63.158 0.00 0.00 40.92 4.79
140 141 2.426406 ATCCGTCTGCATCGGCTGA 61.426 57.895 20.77 0.00 46.49 4.26
145 146 3.374506 TCTGCATCGGCTGATTCTG 57.625 52.632 4.93 5.47 42.21 3.02
193 194 1.202770 AGTGCACAACAAGTAGTCCCC 60.203 52.381 21.04 0.00 0.00 4.81
199 200 0.316204 AACAAGTAGTCCCCGTCACG 59.684 55.000 0.00 0.00 0.00 4.35
206 207 1.970114 GTCCCCGTCACGAGACTCA 60.970 63.158 11.25 0.00 42.73 3.41
209 210 1.032657 CCCCGTCACGAGACTCATCT 61.033 60.000 11.25 0.00 42.73 2.90
228 234 8.545472 ACTCATCTATCCATCCTCTACTAGTAC 58.455 40.741 0.00 0.00 0.00 2.73
229 235 7.863722 TCATCTATCCATCCTCTACTAGTACC 58.136 42.308 0.00 0.00 0.00 3.34
314 344 2.791560 CGTTATGATTGCTCTGTCTCCG 59.208 50.000 0.00 0.00 0.00 4.63
315 345 3.735208 CGTTATGATTGCTCTGTCTCCGT 60.735 47.826 0.00 0.00 0.00 4.69
316 346 2.306341 ATGATTGCTCTGTCTCCGTG 57.694 50.000 0.00 0.00 0.00 4.94
317 347 0.247460 TGATTGCTCTGTCTCCGTGG 59.753 55.000 0.00 0.00 0.00 4.94
318 348 0.247736 GATTGCTCTGTCTCCGTGGT 59.752 55.000 0.00 0.00 0.00 4.16
336 366 2.174969 TGTGGTGTGGACGAAACGC 61.175 57.895 0.00 0.00 0.00 4.84
339 369 1.025113 TGGTGTGGACGAAACGCAAA 61.025 50.000 0.00 0.00 0.00 3.68
351 381 4.501198 ACGAAACGCAAACTAACCATTTTG 59.499 37.500 0.00 0.00 36.06 2.44
501 545 4.829064 TTTCATCTGACAAGGTTTTCCG 57.171 40.909 0.00 0.00 46.35 4.30
514 558 1.823169 TTTTCCGGACGGAGGGAGTG 61.823 60.000 13.64 0.00 46.06 3.51
515 559 2.718487 TTTCCGGACGGAGGGAGTGA 62.718 60.000 13.64 0.00 46.06 3.41
516 560 2.442272 CCGGACGGAGGGAGTGAT 60.442 66.667 4.40 0.00 37.50 3.06
517 561 2.786495 CCGGACGGAGGGAGTGATG 61.786 68.421 4.40 0.00 37.50 3.07
518 562 2.052690 CGGACGGAGGGAGTGATGT 61.053 63.158 0.00 0.00 0.00 3.06
519 563 0.750546 CGGACGGAGGGAGTGATGTA 60.751 60.000 0.00 0.00 0.00 2.29
520 564 1.705873 GGACGGAGGGAGTGATGTAT 58.294 55.000 0.00 0.00 0.00 2.29
521 565 1.614413 GGACGGAGGGAGTGATGTATC 59.386 57.143 0.00 0.00 0.00 2.24
522 566 2.588620 GACGGAGGGAGTGATGTATCT 58.411 52.381 0.00 0.00 0.00 1.98
588 632 8.798859 TTTTACAAGTAGTACTCTATCCGTCT 57.201 34.615 2.58 0.00 30.91 4.18
589 633 8.798859 TTTACAAGTAGTACTCTATCCGTCTT 57.201 34.615 2.58 0.00 30.91 3.01
590 634 9.890629 TTTACAAGTAGTACTCTATCCGTCTTA 57.109 33.333 2.58 0.00 30.91 2.10
591 635 9.890629 TTACAAGTAGTACTCTATCCGTCTTAA 57.109 33.333 2.58 0.00 30.91 1.85
592 636 8.798859 ACAAGTAGTACTCTATCCGTCTTAAA 57.201 34.615 2.58 0.00 0.00 1.52
593 637 9.236006 ACAAGTAGTACTCTATCCGTCTTAAAA 57.764 33.333 2.58 0.00 0.00 1.52
624 668 8.888579 ATTTTAGATTTGTCTAGATACGGGTG 57.111 34.615 0.00 0.00 0.00 4.61
625 669 7.414222 TTTAGATTTGTCTAGATACGGGTGT 57.586 36.000 0.00 0.00 0.00 4.16
626 670 8.523915 TTTAGATTTGTCTAGATACGGGTGTA 57.476 34.615 0.00 0.00 34.45 2.90
627 671 8.701908 TTAGATTTGTCTAGATACGGGTGTAT 57.298 34.615 0.00 0.00 43.97 2.29
640 684 7.828508 ATACGGGTGTATCTATGACACTAAA 57.171 36.000 5.94 0.00 45.35 1.85
641 685 6.534475 ACGGGTGTATCTATGACACTAAAA 57.466 37.500 5.94 0.00 45.35 1.52
642 686 6.335777 ACGGGTGTATCTATGACACTAAAAC 58.664 40.000 5.94 0.00 45.35 2.43
643 687 6.071221 ACGGGTGTATCTATGACACTAAAACA 60.071 38.462 5.94 0.00 45.35 2.83
644 688 6.984474 CGGGTGTATCTATGACACTAAAACAT 59.016 38.462 5.94 0.00 45.35 2.71
645 689 8.139350 CGGGTGTATCTATGACACTAAAACATA 58.861 37.037 5.94 0.00 45.35 2.29
646 690 9.826574 GGGTGTATCTATGACACTAAAACATAA 57.173 33.333 5.94 0.00 45.35 1.90
694 738 5.666969 TGTAAGACACCAATTTTGAGACG 57.333 39.130 0.00 0.00 0.00 4.18
695 739 4.513692 TGTAAGACACCAATTTTGAGACGG 59.486 41.667 0.00 0.00 0.00 4.79
696 740 3.485463 AGACACCAATTTTGAGACGGA 57.515 42.857 0.00 0.00 0.00 4.69
697 741 3.403038 AGACACCAATTTTGAGACGGAG 58.597 45.455 0.00 0.00 0.00 4.63
698 742 2.484264 GACACCAATTTTGAGACGGAGG 59.516 50.000 0.00 0.00 0.00 4.30
699 743 1.812571 CACCAATTTTGAGACGGAGGG 59.187 52.381 0.00 0.00 0.00 4.30
707 751 3.887621 TTGAGACGGAGGGAGTATTTG 57.112 47.619 0.00 0.00 0.00 2.32
712 756 3.581332 AGACGGAGGGAGTATTTGTGAAA 59.419 43.478 0.00 0.00 0.00 2.69
768 812 9.691362 TTTTATTTTGAAACAAGATGGAGTAGC 57.309 29.630 0.00 0.00 0.00 3.58
782 826 6.713903 AGATGGAGTAGCATTTATTGATGTGG 59.286 38.462 0.00 0.00 0.00 4.17
803 847 2.234143 GCAAGATAAGATTGGCCCTCC 58.766 52.381 0.00 0.00 0.00 4.30
804 848 2.868899 CAAGATAAGATTGGCCCTCCC 58.131 52.381 0.00 0.00 0.00 4.30
805 849 1.450360 AGATAAGATTGGCCCTCCCC 58.550 55.000 0.00 0.00 0.00 4.81
806 850 1.060244 AGATAAGATTGGCCCTCCCCT 60.060 52.381 0.00 0.00 0.00 4.79
807 851 1.074566 GATAAGATTGGCCCTCCCCTG 59.925 57.143 0.00 0.00 0.00 4.45
859 903 0.184451 CCCTGTGCTTGCTCCCATAT 59.816 55.000 0.00 0.00 0.00 1.78
865 909 1.281577 TGCTTGCTCCCATATCACACA 59.718 47.619 0.00 0.00 0.00 3.72
876 920 2.038863 TATCACACAACCTGTCCCCT 57.961 50.000 0.00 0.00 0.00 4.79
882 926 0.545548 ACAACCTGTCCCCTCTCTCC 60.546 60.000 0.00 0.00 0.00 3.71
887 931 0.338120 CTGTCCCCTCTCTCCCTCTT 59.662 60.000 0.00 0.00 0.00 2.85
899 943 4.164221 TCTCTCCCTCTTTCTCTCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
901 945 4.164221 TCTCCCTCTTTCTCTCTCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
902 946 4.111577 TCCCTCTTTCTCTCTCTCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
903 947 4.164221 TCCCTCTTTCTCTCTCTCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
904 948 4.164988 CCCTCTTTCTCTCTCTCTCTCTCT 59.835 50.000 0.00 0.00 0.00 3.10
905 949 5.363939 CCTCTTTCTCTCTCTCTCTCTCTC 58.636 50.000 0.00 0.00 0.00 3.20
906 950 5.130145 CCTCTTTCTCTCTCTCTCTCTCTCT 59.870 48.000 0.00 0.00 0.00 3.10
907 951 6.227298 TCTTTCTCTCTCTCTCTCTCTCTC 57.773 45.833 0.00 0.00 0.00 3.20
908 952 5.960811 TCTTTCTCTCTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
909 953 6.441924 TCTTTCTCTCTCTCTCTCTCTCTCTT 59.558 42.308 0.00 0.00 0.00 2.85
910 954 6.627087 TTCTCTCTCTCTCTCTCTCTCTTT 57.373 41.667 0.00 0.00 0.00 2.52
911 955 6.227298 TCTCTCTCTCTCTCTCTCTCTTTC 57.773 45.833 0.00 0.00 0.00 2.62
912 956 5.960811 TCTCTCTCTCTCTCTCTCTCTTTCT 59.039 44.000 0.00 0.00 0.00 2.52
913 957 6.097554 TCTCTCTCTCTCTCTCTCTCTTTCTC 59.902 46.154 0.00 0.00 0.00 2.87
914 958 5.960811 TCTCTCTCTCTCTCTCTCTTTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
915 959 5.982356 TCTCTCTCTCTCTCTCTTTCTCTG 58.018 45.833 0.00 0.00 0.00 3.35
916 960 4.517285 TCTCTCTCTCTCTCTTTCTCTGC 58.483 47.826 0.00 0.00 0.00 4.26
917 961 4.019411 TCTCTCTCTCTCTCTTTCTCTGCA 60.019 45.833 0.00 0.00 0.00 4.41
918 962 4.661222 TCTCTCTCTCTCTTTCTCTGCAA 58.339 43.478 0.00 0.00 0.00 4.08
921 965 4.586421 TCTCTCTCTCTTTCTCTGCAAACA 59.414 41.667 0.00 0.00 0.00 2.83
922 966 5.069648 TCTCTCTCTCTTTCTCTGCAAACAA 59.930 40.000 0.00 0.00 0.00 2.83
926 970 5.295292 TCTCTCTTTCTCTGCAAACAAACAG 59.705 40.000 0.00 0.00 35.15 3.16
927 971 4.336433 TCTCTTTCTCTGCAAACAAACAGG 59.664 41.667 0.00 0.00 34.57 4.00
933 982 1.136695 CTGCAAACAAACAGGAGGCAA 59.863 47.619 0.00 0.00 0.00 4.52
954 1003 0.107752 GGAAGCAGAGCAAGGAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
962 1011 2.183679 GAGCAAGGAGGAGGAAGAAGA 58.816 52.381 0.00 0.00 0.00 2.87
963 1012 2.569404 GAGCAAGGAGGAGGAAGAAGAA 59.431 50.000 0.00 0.00 0.00 2.52
964 1013 2.571202 AGCAAGGAGGAGGAAGAAGAAG 59.429 50.000 0.00 0.00 0.00 2.85
965 1014 2.304470 GCAAGGAGGAGGAAGAAGAAGT 59.696 50.000 0.00 0.00 0.00 3.01
966 1015 3.867984 GCAAGGAGGAGGAAGAAGAAGTG 60.868 52.174 0.00 0.00 0.00 3.16
967 1016 3.551635 AGGAGGAGGAAGAAGAAGTGA 57.448 47.619 0.00 0.00 0.00 3.41
968 1017 3.440127 AGGAGGAGGAAGAAGAAGTGAG 58.560 50.000 0.00 0.00 0.00 3.51
969 1018 2.093711 GGAGGAGGAAGAAGAAGTGAGC 60.094 54.545 0.00 0.00 0.00 4.26
970 1019 2.564947 GAGGAGGAAGAAGAAGTGAGCA 59.435 50.000 0.00 0.00 0.00 4.26
971 1020 2.975489 AGGAGGAAGAAGAAGTGAGCAA 59.025 45.455 0.00 0.00 0.00 3.91
972 1021 3.007831 AGGAGGAAGAAGAAGTGAGCAAG 59.992 47.826 0.00 0.00 0.00 4.01
973 1022 2.741517 GAGGAAGAAGAAGTGAGCAAGC 59.258 50.000 0.00 0.00 0.00 4.01
974 1023 2.105477 AGGAAGAAGAAGTGAGCAAGCA 59.895 45.455 0.00 0.00 0.00 3.91
975 1024 3.080319 GGAAGAAGAAGTGAGCAAGCAT 58.920 45.455 0.00 0.00 0.00 3.79
976 1025 3.126686 GGAAGAAGAAGTGAGCAAGCATC 59.873 47.826 0.00 0.00 0.00 3.91
977 1026 2.709213 AGAAGAAGTGAGCAAGCATCC 58.291 47.619 0.00 0.00 0.00 3.51
978 1027 2.039480 AGAAGAAGTGAGCAAGCATCCA 59.961 45.455 0.00 0.00 0.00 3.41
979 1028 2.803030 AGAAGTGAGCAAGCATCCAT 57.197 45.000 0.00 0.00 0.00 3.41
980 1029 2.641305 AGAAGTGAGCAAGCATCCATC 58.359 47.619 0.00 0.00 0.00 3.51
981 1030 1.674962 GAAGTGAGCAAGCATCCATCC 59.325 52.381 0.00 0.00 0.00 3.51
982 1031 0.622136 AGTGAGCAAGCATCCATCCA 59.378 50.000 0.00 0.00 0.00 3.41
983 1032 1.214673 AGTGAGCAAGCATCCATCCAT 59.785 47.619 0.00 0.00 0.00 3.41
984 1033 1.607628 GTGAGCAAGCATCCATCCATC 59.392 52.381 0.00 0.00 0.00 3.51
985 1034 0.873054 GAGCAAGCATCCATCCATCG 59.127 55.000 0.00 0.00 0.00 3.84
986 1035 0.471191 AGCAAGCATCCATCCATCGA 59.529 50.000 0.00 0.00 0.00 3.59
987 1036 1.073444 AGCAAGCATCCATCCATCGAT 59.927 47.619 0.00 0.00 0.00 3.59
988 1037 1.467734 GCAAGCATCCATCCATCGATC 59.532 52.381 0.00 0.00 0.00 3.69
989 1038 2.082231 CAAGCATCCATCCATCGATCC 58.918 52.381 0.00 0.00 0.00 3.36
990 1039 1.355112 AGCATCCATCCATCGATCCA 58.645 50.000 0.00 0.00 0.00 3.41
991 1040 1.914108 AGCATCCATCCATCGATCCAT 59.086 47.619 0.00 0.00 0.00 3.41
992 1041 2.093075 AGCATCCATCCATCGATCCATC 60.093 50.000 0.00 0.00 0.00 3.51
1048 1097 3.815856 TGGATCTGATGAAGCTGTCTC 57.184 47.619 0.00 0.00 0.00 3.36
1051 1100 4.583907 TGGATCTGATGAAGCTGTCTCTAG 59.416 45.833 0.00 0.00 0.00 2.43
1055 1104 4.881273 TCTGATGAAGCTGTCTCTAGTCTC 59.119 45.833 0.00 0.00 0.00 3.36
1056 1105 4.593956 TGATGAAGCTGTCTCTAGTCTCA 58.406 43.478 0.00 0.00 0.00 3.27
1061 1141 3.881220 AGCTGTCTCTAGTCTCACCTAC 58.119 50.000 0.00 0.00 0.00 3.18
1069 1149 6.826741 GTCTCTAGTCTCACCTACTTCATTCT 59.173 42.308 0.00 0.00 0.00 2.40
1074 1154 7.540474 AGTCTCACCTACTTCATTCTTTGTA 57.460 36.000 0.00 0.00 0.00 2.41
1097 1177 4.401022 TCTGATGCTTTTGTGAGGATTGT 58.599 39.130 0.00 0.00 0.00 2.71
1129 1209 8.204160 TCATGTTTAATAGCTAGCTTGCTTCTA 58.796 33.333 27.19 15.61 43.74 2.10
1133 1213 9.046296 GTTTAATAGCTAGCTTGCTTCTATTGA 57.954 33.333 27.19 14.62 43.74 2.57
1139 1219 3.604582 AGCTTGCTTCTATTGAGTGGTC 58.395 45.455 0.00 0.00 0.00 4.02
1211 1291 1.374252 CTTCGTCCACTTCCACGGG 60.374 63.158 0.00 0.00 36.64 5.28
1238 1318 0.406361 ACAGTTCGTCTCTCTCCCCT 59.594 55.000 0.00 0.00 0.00 4.79
1239 1319 1.099689 CAGTTCGTCTCTCTCCCCTC 58.900 60.000 0.00 0.00 0.00 4.30
1241 1321 0.033894 GTTCGTCTCTCTCCCCTCCT 60.034 60.000 0.00 0.00 0.00 3.69
1272 1356 3.390639 CCATCTGTCTCCTCCTGCTTAAT 59.609 47.826 0.00 0.00 0.00 1.40
1275 1359 5.091261 TCTGTCTCCTCCTGCTTAATTTC 57.909 43.478 0.00 0.00 0.00 2.17
1276 1360 4.780021 TCTGTCTCCTCCTGCTTAATTTCT 59.220 41.667 0.00 0.00 0.00 2.52
1279 1363 5.707298 TGTCTCCTCCTGCTTAATTTCTTTG 59.293 40.000 0.00 0.00 0.00 2.77
1280 1364 5.940470 GTCTCCTCCTGCTTAATTTCTTTGA 59.060 40.000 0.00 0.00 0.00 2.69
1282 1366 7.121907 GTCTCCTCCTGCTTAATTTCTTTGATT 59.878 37.037 0.00 0.00 0.00 2.57
1283 1367 7.121759 TCTCCTCCTGCTTAATTTCTTTGATTG 59.878 37.037 0.00 0.00 0.00 2.67
1284 1368 6.947733 TCCTCCTGCTTAATTTCTTTGATTGA 59.052 34.615 0.00 0.00 0.00 2.57
1286 1370 7.919621 CCTCCTGCTTAATTTCTTTGATTGATC 59.080 37.037 0.00 0.00 0.00 2.92
1287 1371 7.775120 TCCTGCTTAATTTCTTTGATTGATCC 58.225 34.615 0.00 0.00 0.00 3.36
1288 1372 7.396907 TCCTGCTTAATTTCTTTGATTGATCCA 59.603 33.333 0.00 0.00 0.00 3.41
1290 1374 9.245962 CTGCTTAATTTCTTTGATTGATCCATC 57.754 33.333 0.00 0.00 0.00 3.51
1291 1375 7.916977 TGCTTAATTTCTTTGATTGATCCATCG 59.083 33.333 2.60 0.00 0.00 3.84
1292 1376 8.131100 GCTTAATTTCTTTGATTGATCCATCGA 58.869 33.333 2.60 0.00 0.00 3.59
1350 1485 8.087750 TGTTTCTTTCTTTCTTTCTTTGCTTGA 58.912 29.630 0.00 0.00 0.00 3.02
1402 1541 6.222389 CCAAATGAAATCTGCCTGTTTGTTA 58.778 36.000 0.00 0.00 0.00 2.41
1404 1543 7.307337 CCAAATGAAATCTGCCTGTTTGTTAAC 60.307 37.037 0.00 0.00 34.75 2.01
1405 1544 5.195001 TGAAATCTGCCTGTTTGTTAACC 57.805 39.130 2.48 0.00 33.15 2.85
1407 1546 6.065374 TGAAATCTGCCTGTTTGTTAACCTA 58.935 36.000 2.48 0.00 33.15 3.08
1410 1549 4.783055 TCTGCCTGTTTGTTAACCTACAA 58.217 39.130 2.48 0.00 36.30 2.41
1469 1718 5.577860 TCGGAACAAACAAACAAACAAAC 57.422 34.783 0.00 0.00 0.00 2.93
1471 1720 5.522460 TCGGAACAAACAAACAAACAAACAA 59.478 32.000 0.00 0.00 0.00 2.83
1472 1721 6.036735 TCGGAACAAACAAACAAACAAACAAA 59.963 30.769 0.00 0.00 0.00 2.83
1473 1722 6.687105 CGGAACAAACAAACAAACAAACAAAA 59.313 30.769 0.00 0.00 0.00 2.44
1474 1723 7.218204 CGGAACAAACAAACAAACAAACAAAAA 59.782 29.630 0.00 0.00 0.00 1.94
1475 1724 8.527488 GGAACAAACAAACAAACAAACAAAAAG 58.473 29.630 0.00 0.00 0.00 2.27
1514 1780 2.408565 GGGATCTTCACCCATAGACCA 58.591 52.381 0.00 0.00 46.05 4.02
1517 1783 4.223923 GGGATCTTCACCCATAGACCATAG 59.776 50.000 0.00 0.00 46.05 2.23
1518 1784 4.223923 GGATCTTCACCCATAGACCATAGG 59.776 50.000 0.00 0.00 0.00 2.57
1549 1815 0.744281 CTGCTTTCACCCAAACGGTT 59.256 50.000 0.00 0.00 45.36 4.44
1550 1816 1.136110 CTGCTTTCACCCAAACGGTTT 59.864 47.619 0.00 0.00 45.36 3.27
1551 1817 1.134965 TGCTTTCACCCAAACGGTTTG 60.135 47.619 23.33 23.33 45.36 2.93
1562 1828 4.314740 CAAACGGTTTGGAAAGGATTCA 57.685 40.909 22.72 0.00 37.29 2.57
1590 1856 4.363999 GAAACGTGTAGAGAGATGGATGG 58.636 47.826 0.00 0.00 0.00 3.51
1608 1875 0.833287 GGCCTTCCACATCTAGCTGA 59.167 55.000 0.00 0.00 0.00 4.26
1701 1969 3.748083 TCAGCTTATCCATGCCATTCTC 58.252 45.455 0.00 0.00 0.00 2.87
1731 1999 3.320626 GAAATGGCTTTCTTGCTTCACC 58.679 45.455 0.00 0.00 38.19 4.02
1753 2021 5.536161 ACCTGCTTGTTTCTGTCAACATAAT 59.464 36.000 0.00 0.00 36.54 1.28
1754 2022 6.714810 ACCTGCTTGTTTCTGTCAACATAATA 59.285 34.615 0.00 0.00 36.54 0.98
1775 2081 7.891498 AATAAACTGGATTGTATTGTACCCC 57.109 36.000 0.00 0.00 0.00 4.95
1776 2082 4.938575 AACTGGATTGTATTGTACCCCA 57.061 40.909 0.00 0.00 0.00 4.96
1777 2083 5.466127 AACTGGATTGTATTGTACCCCAT 57.534 39.130 0.00 0.00 0.00 4.00
1778 2084 5.466127 ACTGGATTGTATTGTACCCCATT 57.534 39.130 0.00 0.00 0.00 3.16
1816 2122 3.636300 GACCTCTGACTAGATGAGCATGT 59.364 47.826 0.00 0.00 31.21 3.21
1876 2229 0.753111 GGTGCTTCATCCACATCCCC 60.753 60.000 0.00 0.00 34.94 4.81
1889 2242 0.754217 CATCCCCACAATGGCCTCTG 60.754 60.000 3.32 3.35 35.79 3.35
1891 2244 2.357836 CCCACAATGGCCTCTGCT 59.642 61.111 3.32 0.00 35.79 4.24
1892 2245 1.751927 CCCACAATGGCCTCTGCTC 60.752 63.158 3.32 0.00 35.79 4.26
1893 2246 1.302285 CCACAATGGCCTCTGCTCT 59.698 57.895 3.32 0.00 37.74 4.09
1894 2247 1.030488 CCACAATGGCCTCTGCTCTG 61.030 60.000 3.32 0.00 37.74 3.35
1896 2249 2.119655 CAATGGCCTCTGCTCTGCC 61.120 63.158 3.32 0.00 45.56 4.85
1899 2252 4.039092 GGCCTCTGCTCTGCCCAA 62.039 66.667 0.00 0.00 39.30 4.12
1919 2298 1.445518 CCCAACCAACAAGTTGCCC 59.554 57.895 1.81 0.00 44.71 5.36
1969 2349 3.558931 CCCCCAAAAATAAAGGATGCC 57.441 47.619 0.00 0.00 0.00 4.40
2051 2431 0.107361 GGTGTATTGGGCGCCTAAGT 60.107 55.000 29.53 19.24 33.96 2.24
2052 2432 1.680860 GGTGTATTGGGCGCCTAAGTT 60.681 52.381 29.53 16.99 33.96 2.66
2157 2537 3.128589 TGATTGCAATTCCTTCGCCTTAC 59.871 43.478 14.33 0.00 0.00 2.34
2158 2538 1.459450 TGCAATTCCTTCGCCTTACC 58.541 50.000 0.00 0.00 0.00 2.85
2159 2539 1.271652 TGCAATTCCTTCGCCTTACCA 60.272 47.619 0.00 0.00 0.00 3.25
2160 2540 1.816224 GCAATTCCTTCGCCTTACCAA 59.184 47.619 0.00 0.00 0.00 3.67
2161 2541 2.427095 GCAATTCCTTCGCCTTACCAAT 59.573 45.455 0.00 0.00 0.00 3.16
2162 2542 3.489229 GCAATTCCTTCGCCTTACCAATC 60.489 47.826 0.00 0.00 0.00 2.67
2163 2543 3.644966 ATTCCTTCGCCTTACCAATCA 57.355 42.857 0.00 0.00 0.00 2.57
2164 2544 3.426787 TTCCTTCGCCTTACCAATCAA 57.573 42.857 0.00 0.00 0.00 2.57
2165 2545 2.706890 TCCTTCGCCTTACCAATCAAC 58.293 47.619 0.00 0.00 0.00 3.18
2166 2546 2.039216 TCCTTCGCCTTACCAATCAACA 59.961 45.455 0.00 0.00 0.00 3.33
2167 2547 3.016736 CCTTCGCCTTACCAATCAACAT 58.983 45.455 0.00 0.00 0.00 2.71
2168 2548 3.181497 CCTTCGCCTTACCAATCAACATG 60.181 47.826 0.00 0.00 0.00 3.21
2169 2549 1.742831 TCGCCTTACCAATCAACATGC 59.257 47.619 0.00 0.00 0.00 4.06
2170 2550 1.472082 CGCCTTACCAATCAACATGCA 59.528 47.619 0.00 0.00 0.00 3.96
2171 2551 2.478370 CGCCTTACCAATCAACATGCAG 60.478 50.000 0.00 0.00 0.00 4.41
2172 2552 2.736400 GCCTTACCAATCAACATGCAGC 60.736 50.000 0.00 0.00 0.00 5.25
2173 2553 2.492881 CCTTACCAATCAACATGCAGCA 59.507 45.455 0.00 0.00 0.00 4.41
2174 2554 3.504863 CTTACCAATCAACATGCAGCAC 58.495 45.455 0.00 0.00 0.00 4.40
2175 2555 0.241749 ACCAATCAACATGCAGCACG 59.758 50.000 0.00 0.00 0.00 5.34
2176 2556 0.522626 CCAATCAACATGCAGCACGA 59.477 50.000 0.00 0.00 0.00 4.35
2177 2557 1.068402 CCAATCAACATGCAGCACGAA 60.068 47.619 0.00 0.00 0.00 3.85
2178 2558 2.607526 CCAATCAACATGCAGCACGAAA 60.608 45.455 0.00 0.00 0.00 3.46
2179 2559 2.336554 ATCAACATGCAGCACGAAAC 57.663 45.000 0.00 0.00 0.00 2.78
2180 2560 1.020437 TCAACATGCAGCACGAAACA 58.980 45.000 0.00 0.00 0.00 2.83
2181 2561 1.122849 CAACATGCAGCACGAAACAC 58.877 50.000 0.00 0.00 0.00 3.32
2182 2562 0.737804 AACATGCAGCACGAAACACA 59.262 45.000 0.00 0.00 0.00 3.72
2183 2563 0.953727 ACATGCAGCACGAAACACAT 59.046 45.000 0.00 0.00 0.00 3.21
2184 2564 1.333115 CATGCAGCACGAAACACATG 58.667 50.000 0.00 0.00 0.00 3.21
2185 2565 0.387622 ATGCAGCACGAAACACATGC 60.388 50.000 0.00 0.00 39.74 4.06
2186 2566 1.008652 GCAGCACGAAACACATGCA 60.009 52.632 0.00 0.00 41.97 3.96
2187 2567 0.594540 GCAGCACGAAACACATGCAA 60.595 50.000 0.00 0.00 41.97 4.08
2188 2568 1.122849 CAGCACGAAACACATGCAAC 58.877 50.000 0.00 0.00 41.97 4.17
2189 2569 0.030638 AGCACGAAACACATGCAACC 59.969 50.000 0.00 0.00 41.97 3.77
2190 2570 0.248825 GCACGAAACACATGCAACCA 60.249 50.000 0.00 0.00 39.23 3.67
2191 2571 1.757574 CACGAAACACATGCAACCAG 58.242 50.000 0.00 0.00 0.00 4.00
2192 2572 1.333308 CACGAAACACATGCAACCAGA 59.667 47.619 0.00 0.00 0.00 3.86
2193 2573 1.603802 ACGAAACACATGCAACCAGAG 59.396 47.619 0.00 0.00 0.00 3.35
2194 2574 1.603802 CGAAACACATGCAACCAGAGT 59.396 47.619 0.00 0.00 0.00 3.24
2195 2575 2.033299 CGAAACACATGCAACCAGAGTT 59.967 45.455 0.00 0.00 36.33 3.01
2196 2576 3.249799 CGAAACACATGCAACCAGAGTTA 59.750 43.478 0.00 0.00 33.27 2.24
2197 2577 4.083324 CGAAACACATGCAACCAGAGTTAT 60.083 41.667 0.00 0.00 33.27 1.89
2198 2578 5.562696 CGAAACACATGCAACCAGAGTTATT 60.563 40.000 0.00 0.00 33.27 1.40
2199 2579 4.771590 ACACATGCAACCAGAGTTATTG 57.228 40.909 0.00 0.00 33.27 1.90
2201 2581 2.493278 ACATGCAACCAGAGTTATTGCC 59.507 45.455 5.79 0.00 46.53 4.52
2202 2582 1.544724 TGCAACCAGAGTTATTGCCC 58.455 50.000 5.79 0.00 46.53 5.36
2203 2583 1.202989 TGCAACCAGAGTTATTGCCCA 60.203 47.619 5.79 0.00 46.53 5.36
2204 2584 2.102578 GCAACCAGAGTTATTGCCCAT 58.897 47.619 0.00 0.00 42.32 4.00
2205 2585 3.287222 GCAACCAGAGTTATTGCCCATA 58.713 45.455 0.00 0.00 42.32 2.74
2206 2586 3.699038 GCAACCAGAGTTATTGCCCATAA 59.301 43.478 0.00 0.00 42.32 1.90
2207 2587 4.159506 GCAACCAGAGTTATTGCCCATAAA 59.840 41.667 0.00 0.00 42.32 1.40
2212 2592 9.448260 AACCAGAGTTATTGCCCATAAAGGCTA 62.448 40.741 3.93 0.00 43.66 3.93
2223 2603 4.263068 CCCATAAAGGCTAGTCATAGTGGG 60.263 50.000 11.79 11.79 33.74 4.61
2236 2616 6.130569 AGTCATAGTGGGGAGTAACTTAGAG 58.869 44.000 0.00 0.00 0.00 2.43
2246 2626 7.341256 TGGGGAGTAACTTAGAGTAGTAACATG 59.659 40.741 0.00 0.00 0.00 3.21
2249 2629 7.701501 GGAGTAACTTAGAGTAGTAACATGCAC 59.298 40.741 0.00 0.00 0.00 4.57
2289 2669 9.705103 ATGTTACTACTTTCATAGTGGGTAGTA 57.295 33.333 0.00 0.00 41.79 1.82
2290 2670 9.532494 TGTTACTACTTTCATAGTGGGTAGTAA 57.468 33.333 15.47 15.47 45.45 2.24
2301 2681 7.616542 TCATAGTGGGTAGTAACATAAGTGTGA 59.383 37.037 0.00 0.00 38.92 3.58
2353 2733 6.680810 TGTAGACTCATTTTGCATTGGAAAG 58.319 36.000 3.51 0.00 0.00 2.62
2356 2736 3.243839 ACTCATTTTGCATTGGAAAGCGT 60.244 39.130 3.51 0.00 0.00 5.07
2370 2750 4.393680 TGGAAAGCGTTATGTGATGGTAAC 59.606 41.667 0.00 0.00 0.00 2.50
2408 2788 7.141758 TCTATTTGCCTCTCACCTCATTAAT 57.858 36.000 0.00 0.00 0.00 1.40
2415 2795 6.070251 TGCCTCTCACCTCATTAATTACTTGA 60.070 38.462 0.00 0.00 0.00 3.02
2423 2803 8.896744 CACCTCATTAATTACTTGACACATCAT 58.103 33.333 0.00 0.00 33.85 2.45
2424 2804 9.113838 ACCTCATTAATTACTTGACACATCATC 57.886 33.333 0.00 0.00 33.85 2.92
2425 2805 9.334947 CCTCATTAATTACTTGACACATCATCT 57.665 33.333 0.00 0.00 33.85 2.90
2433 2813 4.083643 ACTTGACACATCATCTTCTTTGCG 60.084 41.667 0.00 0.00 33.85 4.85
2434 2814 3.663025 TGACACATCATCTTCTTTGCGA 58.337 40.909 0.00 0.00 0.00 5.10
2435 2815 3.681417 TGACACATCATCTTCTTTGCGAG 59.319 43.478 0.00 0.00 0.00 5.03
2436 2816 2.417933 ACACATCATCTTCTTTGCGAGC 59.582 45.455 0.00 0.00 0.00 5.03
2437 2817 2.417586 CACATCATCTTCTTTGCGAGCA 59.582 45.455 0.00 0.00 0.00 4.26
2438 2818 2.676839 ACATCATCTTCTTTGCGAGCAG 59.323 45.455 0.00 0.00 0.00 4.24
2459 2930 5.464168 CAGCCTAAGATTGAAAACTTGTGG 58.536 41.667 0.00 0.00 0.00 4.17
2468 2939 3.486383 TGAAAACTTGTGGATGAGGGTC 58.514 45.455 0.00 0.00 0.00 4.46
2511 2982 5.992217 AGTGATACGAGGCTGATTTAATTCC 59.008 40.000 0.00 0.00 0.00 3.01
2515 2986 3.871594 ACGAGGCTGATTTAATTCCTTCG 59.128 43.478 0.00 6.60 0.00 3.79
2518 2989 2.354821 GGCTGATTTAATTCCTTCGCGT 59.645 45.455 5.77 0.00 0.00 6.01
2563 3034 2.833794 TCGCTAAGATGCCCAATACAC 58.166 47.619 0.00 0.00 0.00 2.90
2569 3040 1.922447 AGATGCCCAATACACCTGGAA 59.078 47.619 0.00 0.00 35.85 3.53
2598 3069 7.772757 AGGGAGTACTACACATTGTACTACTAC 59.227 40.741 7.57 7.24 46.23 2.73
2641 3116 3.565902 GTCAAGTTTTCTCTTCCCCACTG 59.434 47.826 0.00 0.00 0.00 3.66
2645 3159 3.071747 AGTTTTCTCTTCCCCACTGTCTC 59.928 47.826 0.00 0.00 0.00 3.36
2651 3165 1.550976 CTTCCCCACTGTCTCAGTACC 59.449 57.143 2.03 0.00 43.43 3.34
2660 3174 1.618837 TGTCTCAGTACCAGTGGAAGC 59.381 52.381 18.40 5.21 0.00 3.86
2676 3190 2.117137 GAAGCGAATGATGCTGCATTG 58.883 47.619 17.36 6.06 43.14 2.82
2677 3191 0.248907 AGCGAATGATGCTGCATTGC 60.249 50.000 17.36 14.79 42.14 3.56
2681 3196 2.030628 CGAATGATGCTGCATTGCCATA 60.031 45.455 17.36 0.40 38.53 2.74
2713 3228 1.562475 TCCCTCCGTCCCAAAATAAGG 59.438 52.381 0.00 0.00 0.00 2.69
2750 3306 4.994852 CCAGCAACACTAAGTAGTAGCAAA 59.005 41.667 10.46 0.00 34.13 3.68
2760 3316 8.596380 CACTAAGTAGTAGCAAATAAACTCTGC 58.404 37.037 0.00 0.00 34.13 4.26
2784 3340 8.664798 TGCACATACAGATTACACAGTAATTTC 58.335 33.333 4.13 0.00 0.00 2.17
2785 3341 8.664798 GCACATACAGATTACACAGTAATTTCA 58.335 33.333 4.13 0.00 0.00 2.69
2834 3390 8.273780 CTCTCTAGCACTTAAATTCATTTGGT 57.726 34.615 0.00 0.00 0.00 3.67
2835 3391 9.383519 CTCTCTAGCACTTAAATTCATTTGGTA 57.616 33.333 0.00 0.00 0.00 3.25
2836 3392 9.905713 TCTCTAGCACTTAAATTCATTTGGTAT 57.094 29.630 0.00 0.00 0.00 2.73
2862 3421 8.832735 TCTAATTAATTACAAGGGTTCCTCTGT 58.167 33.333 3.71 0.00 30.89 3.41
2914 3473 0.764890 TGTGGAAGGTGAGGGTTGAG 59.235 55.000 0.00 0.00 0.00 3.02
2977 3536 3.843619 TCACCAACAAGATCTATCACCCA 59.156 43.478 0.00 0.00 0.00 4.51
2983 3542 6.153340 CCAACAAGATCTATCACCCAAATGTT 59.847 38.462 0.00 0.00 0.00 2.71
3008 3567 6.820656 TGATGAGATGTAAGCCTTTCTTTCTC 59.179 38.462 7.28 7.28 37.00 2.87
3074 3641 3.723764 CAGGTTTCATCGTTTGTTTGTCG 59.276 43.478 0.00 0.00 0.00 4.35
3098 3665 1.463444 GATTTGTTCAGGTCCGGTTCG 59.537 52.381 0.00 0.00 0.00 3.95
3147 3718 2.164338 GGAGCCCAATGTTCGGTAAAA 58.836 47.619 0.00 0.00 0.00 1.52
3150 3721 3.426615 AGCCCAATGTTCGGTAAAATCA 58.573 40.909 0.00 0.00 0.00 2.57
3152 3723 3.924073 GCCCAATGTTCGGTAAAATCAAC 59.076 43.478 0.00 0.00 0.00 3.18
3153 3724 4.321675 GCCCAATGTTCGGTAAAATCAACT 60.322 41.667 0.00 0.00 0.00 3.16
3227 3827 1.881973 TGAAGCACCACATTTCTGCTC 59.118 47.619 0.00 0.00 40.43 4.26
3239 3839 0.761187 TTCTGCTCTTGTCCTGCTGT 59.239 50.000 0.00 0.00 0.00 4.40
3242 3842 0.181114 TGCTCTTGTCCTGCTGTTGT 59.819 50.000 0.00 0.00 0.00 3.32
3243 3843 0.590195 GCTCTTGTCCTGCTGTTGTG 59.410 55.000 0.00 0.00 0.00 3.33
3291 3900 2.588989 CTGCCCCAGCTTCTCCTC 59.411 66.667 0.00 0.00 40.80 3.71
3398 4007 5.864628 GGTCTGATTTGTACCAGAACTTC 57.135 43.478 7.44 0.00 42.29 3.01
3536 4146 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
3602 4212 2.911143 GACGAGGCCATCATGGGT 59.089 61.111 5.62 0.00 38.19 4.51
3675 4293 5.938279 ACTCAGTAATGCAGGATGATCATT 58.062 37.500 10.14 0.00 39.69 2.57
3676 4294 6.363065 ACTCAGTAATGCAGGATGATCATTT 58.637 36.000 10.14 1.44 39.69 2.32
3677 4295 6.485984 ACTCAGTAATGCAGGATGATCATTTC 59.514 38.462 10.14 5.81 39.69 2.17
3691 4309 7.876582 GGATGATCATTTCATGTATCTCTGTCA 59.123 37.037 10.14 0.00 45.29 3.58
3721 4339 4.899239 ATAGCTGCGGCGCTCACC 62.899 66.667 33.26 17.27 44.37 4.02
3773 4394 2.836372 TCATCAGCCATCTCAACTCAGT 59.164 45.455 0.00 0.00 0.00 3.41
3775 4396 3.777106 TCAGCCATCTCAACTCAGTTT 57.223 42.857 0.00 0.00 0.00 2.66
3778 4399 3.436015 CAGCCATCTCAACTCAGTTTCAG 59.564 47.826 0.00 0.00 0.00 3.02
3780 4401 3.817647 GCCATCTCAACTCAGTTTCAGTT 59.182 43.478 0.00 0.00 34.24 3.16
3781 4402 4.083590 GCCATCTCAACTCAGTTTCAGTTC 60.084 45.833 0.00 0.00 31.40 3.01
3782 4403 4.453819 CCATCTCAACTCAGTTTCAGTTCC 59.546 45.833 0.00 0.00 31.40 3.62
3783 4404 4.073293 TCTCAACTCAGTTTCAGTTCCC 57.927 45.455 0.00 0.00 31.40 3.97
3784 4405 3.142174 CTCAACTCAGTTTCAGTTCCCC 58.858 50.000 0.00 0.00 31.40 4.81
3785 4406 2.777692 TCAACTCAGTTTCAGTTCCCCT 59.222 45.455 0.00 0.00 31.40 4.79
3786 4407 3.971305 TCAACTCAGTTTCAGTTCCCCTA 59.029 43.478 0.00 0.00 31.40 3.53
3787 4408 4.040461 TCAACTCAGTTTCAGTTCCCCTAG 59.960 45.833 0.00 0.00 31.40 3.02
3788 4409 2.303311 ACTCAGTTTCAGTTCCCCTAGC 59.697 50.000 0.00 0.00 0.00 3.42
3789 4410 2.569404 CTCAGTTTCAGTTCCCCTAGCT 59.431 50.000 0.00 0.00 0.00 3.32
3790 4411 2.567615 TCAGTTTCAGTTCCCCTAGCTC 59.432 50.000 0.00 0.00 0.00 4.09
3793 4414 1.475403 TTCAGTTCCCCTAGCTCTCG 58.525 55.000 0.00 0.00 0.00 4.04
3797 4418 0.456628 GTTCCCCTAGCTCTCGTGTC 59.543 60.000 0.00 0.00 0.00 3.67
3798 4419 1.030488 TTCCCCTAGCTCTCGTGTCG 61.030 60.000 0.00 0.00 0.00 4.35
3800 4421 2.023461 CCTAGCTCTCGTGTCGCG 59.977 66.667 0.00 0.00 43.01 5.87
3805 4426 2.127345 CTCTCGTGTCGCGTCGTT 60.127 61.111 5.77 0.00 42.13 3.85
3808 4429 2.278077 TCGTGTCGCGTCGTTGTT 60.278 55.556 5.77 0.00 42.13 2.83
3811 4432 1.345856 GTGTCGCGTCGTTGTTGTT 59.654 52.632 5.77 0.00 0.00 2.83
3813 4434 1.345856 GTCGCGTCGTTGTTGTTGT 59.654 52.632 5.77 0.00 0.00 3.32
3814 4435 0.247379 GTCGCGTCGTTGTTGTTGTT 60.247 50.000 5.77 0.00 0.00 2.83
3820 4441 2.424341 GTCGTTGTTGTTGTTGTCGTC 58.576 47.619 0.00 0.00 0.00 4.20
3821 4442 2.067013 TCGTTGTTGTTGTTGTCGTCA 58.933 42.857 0.00 0.00 0.00 4.35
3823 4444 3.026349 CGTTGTTGTTGTTGTCGTCATC 58.974 45.455 0.00 0.00 0.00 2.92
3828 4449 1.126079 GTTGTTGTCGTCATCGTCGT 58.874 50.000 0.00 0.00 38.33 4.34
3829 4450 1.121967 GTTGTTGTCGTCATCGTCGTC 59.878 52.381 0.00 0.00 38.33 4.20
3830 4451 0.308376 TGTTGTCGTCATCGTCGTCA 59.692 50.000 0.00 0.00 38.33 4.35
3831 4452 1.068816 TGTTGTCGTCATCGTCGTCAT 60.069 47.619 0.00 0.00 38.33 3.06
3832 4453 1.578023 GTTGTCGTCATCGTCGTCATC 59.422 52.381 0.00 0.00 38.33 2.92
3833 4454 0.098200 TGTCGTCATCGTCGTCATCC 59.902 55.000 0.00 0.00 38.33 3.51
3904 4530 4.164221 TGTTTCCATTCTAGGGGATGTCTC 59.836 45.833 0.00 0.00 32.15 3.36
3917 4543 4.223032 GGGGATGTCTCTTCTGTTCTGTTA 59.777 45.833 0.00 0.00 0.00 2.41
3950 4576 8.981724 TTCAGTTCATGTTACTACTGTATGTC 57.018 34.615 0.00 0.00 39.16 3.06
3952 4578 7.177744 TCAGTTCATGTTACTACTGTATGTCCA 59.822 37.037 0.00 0.00 39.16 4.02
3968 4621 8.213518 TGTATGTCCAGCTGAATTTAAATCTC 57.786 34.615 17.39 2.83 0.00 2.75
4052 4711 6.534475 TCTTGCATTGCTAGGATGAATTTT 57.466 33.333 17.93 0.00 32.69 1.82
4053 4712 6.938507 TCTTGCATTGCTAGGATGAATTTTT 58.061 32.000 17.93 0.00 32.69 1.94
4054 4713 6.814644 TCTTGCATTGCTAGGATGAATTTTTG 59.185 34.615 17.93 0.00 32.69 2.44
4055 4714 6.283544 TGCATTGCTAGGATGAATTTTTGA 57.716 33.333 10.49 0.00 0.00 2.69
4056 4715 6.699366 TGCATTGCTAGGATGAATTTTTGAA 58.301 32.000 10.49 0.00 0.00 2.69
4057 4716 7.332557 TGCATTGCTAGGATGAATTTTTGAAT 58.667 30.769 10.49 0.00 0.00 2.57
4058 4717 7.493320 TGCATTGCTAGGATGAATTTTTGAATC 59.507 33.333 10.49 0.00 0.00 2.52
4059 4718 7.493320 GCATTGCTAGGATGAATTTTTGAATCA 59.507 33.333 0.16 0.00 0.00 2.57
4060 4719 9.542462 CATTGCTAGGATGAATTTTTGAATCAT 57.458 29.630 0.00 0.00 36.54 2.45
4061 4720 8.936070 TTGCTAGGATGAATTTTTGAATCATG 57.064 30.769 0.00 0.00 34.10 3.07
4076 4735 6.748333 TGAATCATGAGTTCAGATCCAAAC 57.252 37.500 13.31 0.00 32.23 2.93
4102 4761 6.427853 ACGAATCTGAATCATGAACACAAGAA 59.572 34.615 0.00 0.00 0.00 2.52
4103 4762 7.041167 ACGAATCTGAATCATGAACACAAGAAA 60.041 33.333 0.00 0.00 0.00 2.52
4105 4764 8.981724 AATCTGAATCATGAACACAAGAAATG 57.018 30.769 0.00 0.00 0.00 2.32
4162 4821 9.152327 ACTTAGATACATTCAGATTGGATGAGA 57.848 33.333 4.41 0.00 0.00 3.27
4166 4825 9.097946 AGATACATTCAGATTGGATGAGATACA 57.902 33.333 4.41 0.00 0.00 2.29
4167 4826 9.887629 GATACATTCAGATTGGATGAGATACAT 57.112 33.333 4.41 0.00 42.47 2.29
4169 4828 8.618702 ACATTCAGATTGGATGAGATACATTC 57.381 34.615 4.41 0.00 39.56 2.67
4170 4829 8.215736 ACATTCAGATTGGATGAGATACATTCA 58.784 33.333 4.41 0.00 42.16 2.57
4171 4830 8.722394 CATTCAGATTGGATGAGATACATTCAG 58.278 37.037 0.00 0.00 44.24 3.02
4172 4831 7.607615 TCAGATTGGATGAGATACATTCAGA 57.392 36.000 0.00 0.00 44.24 3.27
4173 4832 8.203681 TCAGATTGGATGAGATACATTCAGAT 57.796 34.615 0.00 0.00 44.24 2.90
4174 4833 8.312564 TCAGATTGGATGAGATACATTCAGATC 58.687 37.037 0.00 0.00 44.24 2.75
4175 4834 7.549842 CAGATTGGATGAGATACATTCAGATCC 59.450 40.741 0.00 0.00 44.24 3.36
4176 4835 7.458488 AGATTGGATGAGATACATTCAGATCCT 59.542 37.037 0.00 0.00 44.24 3.24
4177 4836 6.356186 TGGATGAGATACATTCAGATCCTG 57.644 41.667 0.00 0.00 39.34 3.86
4178 4837 6.080009 TGGATGAGATACATTCAGATCCTGA 58.920 40.000 0.00 0.00 39.34 3.86
4527 5186 2.165301 CGGTCGCCGTTTCTCATCC 61.165 63.158 9.69 0.00 42.73 3.51
4533 5192 1.140407 GCCGTTTCTCATCCTCGACG 61.140 60.000 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.522638 GCCCCTCGCATTTACGTCG 61.523 63.158 0.00 0.00 37.47 5.12
19 20 2.124860 GGCCCCTCGCATTTACGT 60.125 61.111 0.00 0.00 40.31 3.57
23 24 1.454479 CATCTGGCCCCTCGCATTT 60.454 57.895 0.00 0.00 40.31 2.32
59 60 4.918588 ACTTAATTCATCCACCGACCTTT 58.081 39.130 0.00 0.00 0.00 3.11
80 81 2.101415 GCTAAATGGCCCCTCATGAAAC 59.899 50.000 0.00 0.00 0.00 2.78
106 107 0.878086 GGATGGCTCTAGCGTCTTGC 60.878 60.000 0.00 0.00 46.98 4.01
128 129 1.880271 ATCAGAATCAGCCGATGCAG 58.120 50.000 0.00 0.00 41.13 4.41
140 141 7.452501 TCTTTTTCTGGACATGGAAATCAGAAT 59.547 33.333 14.45 0.00 41.94 2.40
141 142 6.777091 TCTTTTTCTGGACATGGAAATCAGAA 59.223 34.615 0.00 6.08 41.07 3.02
142 143 6.306199 TCTTTTTCTGGACATGGAAATCAGA 58.694 36.000 0.00 0.00 32.54 3.27
143 144 6.579666 TCTTTTTCTGGACATGGAAATCAG 57.420 37.500 0.00 0.00 32.54 2.90
144 145 7.890127 AGTATCTTTTTCTGGACATGGAAATCA 59.110 33.333 0.00 0.00 32.54 2.57
145 146 8.286191 AGTATCTTTTTCTGGACATGGAAATC 57.714 34.615 0.00 0.00 32.54 2.17
199 200 6.721318 AGTAGAGGATGGATAGATGAGTCTC 58.279 44.000 0.00 0.00 35.87 3.36
206 207 7.462972 ACTGGTACTAGTAGAGGATGGATAGAT 59.537 40.741 10.57 0.00 0.00 1.98
209 210 7.738524 AGTACTGGTACTAGTAGAGGATGGATA 59.261 40.741 18.42 0.00 43.98 2.59
286 316 3.620374 CAGAGCAATCATAACGCACTTCT 59.380 43.478 0.00 0.00 0.00 2.85
296 326 2.101415 CCACGGAGACAGAGCAATCATA 59.899 50.000 0.00 0.00 0.00 2.15
299 329 0.247736 ACCACGGAGACAGAGCAATC 59.752 55.000 0.00 0.00 0.00 2.67
314 344 0.745128 TTTCGTCCACACCACACCAC 60.745 55.000 0.00 0.00 0.00 4.16
315 345 0.745128 GTTTCGTCCACACCACACCA 60.745 55.000 0.00 0.00 0.00 4.17
316 346 1.768112 CGTTTCGTCCACACCACACC 61.768 60.000 0.00 0.00 0.00 4.16
317 347 1.639534 CGTTTCGTCCACACCACAC 59.360 57.895 0.00 0.00 0.00 3.82
318 348 2.174969 GCGTTTCGTCCACACCACA 61.175 57.895 0.00 0.00 0.00 4.17
339 369 9.606631 TGCAAGAAAATAAACAAAATGGTTAGT 57.393 25.926 0.00 0.00 32.42 2.24
435 478 4.634184 ACTACGTCTAGATGCATCGTTT 57.366 40.909 20.67 6.61 36.24 3.60
436 479 4.634184 AACTACGTCTAGATGCATCGTT 57.366 40.909 20.67 12.78 36.24 3.85
438 481 8.016229 AGTATTAAACTACGTCTAGATGCATCG 58.984 37.037 20.67 11.84 36.36 3.84
448 492 9.128404 TGATGTATCCAGTATTAAACTACGTCT 57.872 33.333 0.00 0.00 35.76 4.18
479 523 4.037446 CCGGAAAACCTTGTCAGATGAAAA 59.963 41.667 0.00 0.00 0.00 2.29
480 524 3.568007 CCGGAAAACCTTGTCAGATGAAA 59.432 43.478 0.00 0.00 0.00 2.69
484 528 2.779506 GTCCGGAAAACCTTGTCAGAT 58.220 47.619 5.23 0.00 0.00 2.90
487 531 0.533308 CCGTCCGGAAAACCTTGTCA 60.533 55.000 5.23 0.00 37.50 3.58
491 535 1.373812 CCTCCGTCCGGAAAACCTT 59.626 57.895 5.23 0.00 44.66 3.50
493 537 2.046604 CCCTCCGTCCGGAAAACC 60.047 66.667 5.23 0.00 44.66 3.27
501 545 1.614413 GATACATCACTCCCTCCGTCC 59.386 57.143 0.00 0.00 0.00 4.79
563 607 8.798859 AGACGGATAGAGTACTACTTGTAAAA 57.201 34.615 0.00 0.00 32.25 1.52
567 611 8.798859 TTTAAGACGGATAGAGTACTACTTGT 57.201 34.615 0.00 0.00 0.00 3.16
598 642 9.976511 CACCCGTATCTAGACAAATCTAAAATA 57.023 33.333 0.00 0.00 36.98 1.40
599 643 8.483758 ACACCCGTATCTAGACAAATCTAAAAT 58.516 33.333 0.00 0.00 36.98 1.82
600 644 7.844009 ACACCCGTATCTAGACAAATCTAAAA 58.156 34.615 0.00 0.00 36.98 1.52
601 645 7.414222 ACACCCGTATCTAGACAAATCTAAA 57.586 36.000 0.00 0.00 36.98 1.85
602 646 8.701908 ATACACCCGTATCTAGACAAATCTAA 57.298 34.615 0.00 0.00 32.66 2.10
616 660 7.828508 TTTAGTGTCATAGATACACCCGTAT 57.171 36.000 2.90 0.00 46.77 3.06
617 661 7.122501 TGTTTTAGTGTCATAGATACACCCGTA 59.877 37.037 2.90 0.00 46.77 4.02
618 662 6.071221 TGTTTTAGTGTCATAGATACACCCGT 60.071 38.462 2.90 0.00 46.77 5.28
619 663 6.334989 TGTTTTAGTGTCATAGATACACCCG 58.665 40.000 2.90 0.00 46.77 5.28
620 664 9.826574 TTATGTTTTAGTGTCATAGATACACCC 57.173 33.333 2.90 0.00 46.77 4.61
668 712 8.286800 CGTCTCAAAATTGGTGTCTTACATTTA 58.713 33.333 0.00 0.00 0.00 1.40
669 713 7.138736 CGTCTCAAAATTGGTGTCTTACATTT 58.861 34.615 0.00 0.00 0.00 2.32
670 714 6.293955 CCGTCTCAAAATTGGTGTCTTACATT 60.294 38.462 0.00 0.00 0.00 2.71
671 715 5.181245 CCGTCTCAAAATTGGTGTCTTACAT 59.819 40.000 0.00 0.00 0.00 2.29
672 716 4.513692 CCGTCTCAAAATTGGTGTCTTACA 59.486 41.667 0.00 0.00 0.00 2.41
673 717 4.753107 TCCGTCTCAAAATTGGTGTCTTAC 59.247 41.667 0.00 0.00 0.00 2.34
674 718 4.963373 TCCGTCTCAAAATTGGTGTCTTA 58.037 39.130 0.00 0.00 0.00 2.10
675 719 3.815401 CTCCGTCTCAAAATTGGTGTCTT 59.185 43.478 0.00 0.00 0.00 3.01
676 720 3.403038 CTCCGTCTCAAAATTGGTGTCT 58.597 45.455 0.00 0.00 0.00 3.41
677 721 2.484264 CCTCCGTCTCAAAATTGGTGTC 59.516 50.000 0.00 0.00 0.00 3.67
678 722 2.504367 CCTCCGTCTCAAAATTGGTGT 58.496 47.619 0.00 0.00 0.00 4.16
679 723 1.812571 CCCTCCGTCTCAAAATTGGTG 59.187 52.381 0.00 0.00 0.00 4.17
680 724 1.702957 TCCCTCCGTCTCAAAATTGGT 59.297 47.619 0.00 0.00 0.00 3.67
681 725 2.290323 ACTCCCTCCGTCTCAAAATTGG 60.290 50.000 0.00 0.00 0.00 3.16
682 726 3.059352 ACTCCCTCCGTCTCAAAATTG 57.941 47.619 0.00 0.00 0.00 2.32
683 727 5.437191 AATACTCCCTCCGTCTCAAAATT 57.563 39.130 0.00 0.00 0.00 1.82
684 728 5.186198 CAAATACTCCCTCCGTCTCAAAAT 58.814 41.667 0.00 0.00 0.00 1.82
685 729 4.041198 ACAAATACTCCCTCCGTCTCAAAA 59.959 41.667 0.00 0.00 0.00 2.44
686 730 3.581332 ACAAATACTCCCTCCGTCTCAAA 59.419 43.478 0.00 0.00 0.00 2.69
687 731 3.056107 CACAAATACTCCCTCCGTCTCAA 60.056 47.826 0.00 0.00 0.00 3.02
688 732 2.496070 CACAAATACTCCCTCCGTCTCA 59.504 50.000 0.00 0.00 0.00 3.27
689 733 2.758979 TCACAAATACTCCCTCCGTCTC 59.241 50.000 0.00 0.00 0.00 3.36
690 734 2.816411 TCACAAATACTCCCTCCGTCT 58.184 47.619 0.00 0.00 0.00 4.18
691 735 3.604875 TTCACAAATACTCCCTCCGTC 57.395 47.619 0.00 0.00 0.00 4.79
692 736 4.360951 TTTTCACAAATACTCCCTCCGT 57.639 40.909 0.00 0.00 0.00 4.69
742 786 9.691362 GCTACTCCATCTTGTTTCAAAATAAAA 57.309 29.630 0.00 0.00 0.00 1.52
743 787 8.855110 TGCTACTCCATCTTGTTTCAAAATAAA 58.145 29.630 0.00 0.00 0.00 1.40
744 788 8.402798 TGCTACTCCATCTTGTTTCAAAATAA 57.597 30.769 0.00 0.00 0.00 1.40
745 789 7.994425 TGCTACTCCATCTTGTTTCAAAATA 57.006 32.000 0.00 0.00 0.00 1.40
746 790 6.899393 TGCTACTCCATCTTGTTTCAAAAT 57.101 33.333 0.00 0.00 0.00 1.82
747 791 6.899393 ATGCTACTCCATCTTGTTTCAAAA 57.101 33.333 0.00 0.00 0.00 2.44
748 792 6.899393 AATGCTACTCCATCTTGTTTCAAA 57.101 33.333 0.00 0.00 0.00 2.69
749 793 6.899393 AAATGCTACTCCATCTTGTTTCAA 57.101 33.333 0.00 0.00 0.00 2.69
750 794 8.461222 CAATAAATGCTACTCCATCTTGTTTCA 58.539 33.333 0.00 0.00 0.00 2.69
751 795 8.677300 TCAATAAATGCTACTCCATCTTGTTTC 58.323 33.333 0.00 0.00 0.00 2.78
752 796 8.579850 TCAATAAATGCTACTCCATCTTGTTT 57.420 30.769 0.00 0.00 0.00 2.83
753 797 8.627403 CATCAATAAATGCTACTCCATCTTGTT 58.373 33.333 0.00 0.00 0.00 2.83
754 798 7.776969 ACATCAATAAATGCTACTCCATCTTGT 59.223 33.333 0.00 0.00 0.00 3.16
755 799 8.074370 CACATCAATAAATGCTACTCCATCTTG 58.926 37.037 0.00 0.00 0.00 3.02
756 800 7.230108 CCACATCAATAAATGCTACTCCATCTT 59.770 37.037 0.00 0.00 0.00 2.40
757 801 6.713903 CCACATCAATAAATGCTACTCCATCT 59.286 38.462 0.00 0.00 0.00 2.90
758 802 6.072286 CCCACATCAATAAATGCTACTCCATC 60.072 42.308 0.00 0.00 0.00 3.51
759 803 5.771666 CCCACATCAATAAATGCTACTCCAT 59.228 40.000 0.00 0.00 0.00 3.41
760 804 5.132502 CCCACATCAATAAATGCTACTCCA 58.867 41.667 0.00 0.00 0.00 3.86
768 812 7.944061 TCTTATCTTGCCCACATCAATAAATG 58.056 34.615 0.00 0.00 0.00 2.32
782 826 2.234143 GAGGGCCAATCTTATCTTGCC 58.766 52.381 6.18 0.00 0.00 4.52
803 847 3.252284 AGGAGTGGTGGCACAGGG 61.252 66.667 20.82 0.00 41.80 4.45
804 848 1.772819 AAGAGGAGTGGTGGCACAGG 61.773 60.000 20.82 0.00 41.80 4.00
805 849 0.109342 AAAGAGGAGTGGTGGCACAG 59.891 55.000 20.82 0.00 41.80 3.66
806 850 0.550914 AAAAGAGGAGTGGTGGCACA 59.449 50.000 20.82 2.61 0.00 4.57
807 851 1.202818 AGAAAAGAGGAGTGGTGGCAC 60.203 52.381 9.70 9.70 0.00 5.01
859 903 0.399949 AGAGGGGACAGGTTGTGTGA 60.400 55.000 0.00 0.00 40.56 3.58
865 909 1.081277 GGGAGAGAGGGGACAGGTT 59.919 63.158 0.00 0.00 0.00 3.50
876 920 4.111577 AGAGAGAGAGAAAGAGGGAGAGA 58.888 47.826 0.00 0.00 0.00 3.10
882 926 5.130145 AGAGAGAGAGAGAGAGAGAAAGAGG 59.870 48.000 0.00 0.00 0.00 3.69
887 931 6.441924 AGAAAGAGAGAGAGAGAGAGAGAGAA 59.558 42.308 0.00 0.00 0.00 2.87
899 943 4.880759 TGTTTGCAGAGAAAGAGAGAGAG 58.119 43.478 0.00 0.00 0.00 3.20
901 945 5.295292 TGTTTGTTTGCAGAGAAAGAGAGAG 59.705 40.000 0.00 0.00 0.00 3.20
902 946 5.185454 TGTTTGTTTGCAGAGAAAGAGAGA 58.815 37.500 0.00 0.00 0.00 3.10
903 947 5.490139 TGTTTGTTTGCAGAGAAAGAGAG 57.510 39.130 0.00 0.00 0.00 3.20
904 948 4.336433 CCTGTTTGTTTGCAGAGAAAGAGA 59.664 41.667 20.70 0.81 34.87 3.10
905 949 4.336433 TCCTGTTTGTTTGCAGAGAAAGAG 59.664 41.667 14.55 14.55 34.87 2.85
906 950 4.269183 TCCTGTTTGTTTGCAGAGAAAGA 58.731 39.130 0.00 0.00 34.87 2.52
907 951 4.498682 CCTCCTGTTTGTTTGCAGAGAAAG 60.499 45.833 0.00 0.00 34.87 2.62
908 952 3.381272 CCTCCTGTTTGTTTGCAGAGAAA 59.619 43.478 0.00 0.00 34.87 2.52
909 953 2.951642 CCTCCTGTTTGTTTGCAGAGAA 59.048 45.455 0.00 0.00 34.87 2.87
910 954 2.575532 CCTCCTGTTTGTTTGCAGAGA 58.424 47.619 0.00 0.00 34.87 3.10
911 955 1.000938 GCCTCCTGTTTGTTTGCAGAG 60.001 52.381 0.00 0.00 34.87 3.35
912 956 1.032014 GCCTCCTGTTTGTTTGCAGA 58.968 50.000 0.00 0.00 34.87 4.26
913 957 0.746063 TGCCTCCTGTTTGTTTGCAG 59.254 50.000 0.00 0.00 0.00 4.41
914 958 1.136695 CTTGCCTCCTGTTTGTTTGCA 59.863 47.619 0.00 0.00 0.00 4.08
915 959 1.538849 CCTTGCCTCCTGTTTGTTTGC 60.539 52.381 0.00 0.00 0.00 3.68
916 960 1.069049 CCCTTGCCTCCTGTTTGTTTG 59.931 52.381 0.00 0.00 0.00 2.93
917 961 1.063266 TCCCTTGCCTCCTGTTTGTTT 60.063 47.619 0.00 0.00 0.00 2.83
918 962 0.555769 TCCCTTGCCTCCTGTTTGTT 59.444 50.000 0.00 0.00 0.00 2.83
921 965 0.540597 GCTTCCCTTGCCTCCTGTTT 60.541 55.000 0.00 0.00 0.00 2.83
922 966 1.075659 GCTTCCCTTGCCTCCTGTT 59.924 57.895 0.00 0.00 0.00 3.16
926 970 1.077858 CTCTGCTTCCCTTGCCTCC 60.078 63.158 0.00 0.00 0.00 4.30
927 971 1.748500 GCTCTGCTTCCCTTGCCTC 60.749 63.158 0.00 0.00 0.00 4.70
933 982 1.560866 CCTCCTTGCTCTGCTTCCCT 61.561 60.000 0.00 0.00 0.00 4.20
954 1003 2.498167 TGCTTGCTCACTTCTTCTTCC 58.502 47.619 0.00 0.00 0.00 3.46
962 1011 1.005097 TGGATGGATGCTTGCTCACTT 59.995 47.619 0.00 0.00 0.00 3.16
963 1012 0.622136 TGGATGGATGCTTGCTCACT 59.378 50.000 0.00 0.00 0.00 3.41
964 1013 1.607628 GATGGATGGATGCTTGCTCAC 59.392 52.381 0.00 0.00 0.00 3.51
965 1014 1.812708 CGATGGATGGATGCTTGCTCA 60.813 52.381 0.00 0.00 0.00 4.26
966 1015 0.873054 CGATGGATGGATGCTTGCTC 59.127 55.000 0.00 0.00 0.00 4.26
967 1016 0.471191 TCGATGGATGGATGCTTGCT 59.529 50.000 0.00 0.00 0.00 3.91
968 1017 1.467734 GATCGATGGATGGATGCTTGC 59.532 52.381 0.54 0.00 31.51 4.01
969 1018 2.082231 GGATCGATGGATGGATGCTTG 58.918 52.381 0.54 0.00 32.24 4.01
970 1019 1.701292 TGGATCGATGGATGGATGCTT 59.299 47.619 0.54 0.00 35.12 3.91
971 1020 1.355112 TGGATCGATGGATGGATGCT 58.645 50.000 0.54 0.00 35.12 3.79
972 1021 2.286872 GATGGATCGATGGATGGATGC 58.713 52.381 0.54 0.00 34.75 3.91
985 1034 0.038159 GACATCCCGGTCGATGGATC 60.038 60.000 20.56 9.56 43.34 3.36
986 1035 0.470080 AGACATCCCGGTCGATGGAT 60.470 55.000 20.56 8.03 43.34 3.41
987 1036 0.686441 AAGACATCCCGGTCGATGGA 60.686 55.000 20.56 6.05 43.34 3.41
988 1037 0.249489 GAAGACATCCCGGTCGATGG 60.249 60.000 20.56 6.98 43.34 3.51
989 1038 0.249489 GGAAGACATCCCGGTCGATG 60.249 60.000 16.49 16.49 43.00 3.84
990 1039 2.125178 GGAAGACATCCCGGTCGAT 58.875 57.895 0.00 0.00 43.00 3.59
991 1040 3.612251 GGAAGACATCCCGGTCGA 58.388 61.111 0.00 0.00 43.00 4.20
1048 1097 7.607250 ACAAAGAATGAAGTAGGTGAGACTAG 58.393 38.462 0.00 0.00 0.00 2.57
1051 1100 8.254508 AGATACAAAGAATGAAGTAGGTGAGAC 58.745 37.037 0.00 0.00 0.00 3.36
1055 1104 8.824781 CATCAGATACAAAGAATGAAGTAGGTG 58.175 37.037 0.00 0.00 0.00 4.00
1056 1105 7.497249 GCATCAGATACAAAGAATGAAGTAGGT 59.503 37.037 0.00 0.00 0.00 3.08
1061 1141 9.073368 CAAAAGCATCAGATACAAAGAATGAAG 57.927 33.333 0.00 0.00 0.00 3.02
1069 1149 6.003326 TCCTCACAAAAGCATCAGATACAAA 58.997 36.000 0.00 0.00 0.00 2.83
1074 1154 5.014858 ACAATCCTCACAAAAGCATCAGAT 58.985 37.500 0.00 0.00 0.00 2.90
1115 1195 3.559242 CCACTCAATAGAAGCAAGCTAGC 59.441 47.826 6.62 6.62 0.00 3.42
1129 1209 3.433314 GCTCATCATCCTGACCACTCAAT 60.433 47.826 0.00 0.00 0.00 2.57
1133 1213 0.463204 CGCTCATCATCCTGACCACT 59.537 55.000 0.00 0.00 0.00 4.00
1139 1219 3.744942 CCTTGTAATCGCTCATCATCCTG 59.255 47.826 0.00 0.00 0.00 3.86
1238 1318 1.216678 GACAGATGGAGAGAGGGAGGA 59.783 57.143 0.00 0.00 0.00 3.71
1239 1319 1.217689 AGACAGATGGAGAGAGGGAGG 59.782 57.143 0.00 0.00 0.00 4.30
1241 1321 1.216678 GGAGACAGATGGAGAGAGGGA 59.783 57.143 0.00 0.00 0.00 4.20
1272 1356 7.628769 TCAATCGATGGATCAATCAAAGAAA 57.371 32.000 10.75 0.00 30.81 2.52
1275 1359 7.645402 TCAATCAATCGATGGATCAATCAAAG 58.355 34.615 15.72 0.32 30.81 2.77
1276 1360 7.571080 TCAATCAATCGATGGATCAATCAAA 57.429 32.000 15.72 0.00 30.81 2.69
1279 1363 7.813645 TCAATCAATCAATCGATGGATCAATC 58.186 34.615 15.72 0.00 40.83 2.67
1280 1364 7.754851 TCAATCAATCAATCGATGGATCAAT 57.245 32.000 15.72 9.40 40.83 2.57
1282 1366 7.754851 AATCAATCAATCAATCGATGGATCA 57.245 32.000 15.72 6.32 40.83 2.92
1283 1367 8.396390 CCTAATCAATCAATCAATCGATGGATC 58.604 37.037 15.72 0.00 40.83 3.36
1284 1368 7.886970 ACCTAATCAATCAATCAATCGATGGAT 59.113 33.333 9.63 9.63 43.13 3.41
1286 1370 7.303261 CACCTAATCAATCAATCAATCGATGG 58.697 38.462 0.00 0.00 30.13 3.51
1287 1371 6.800408 GCACCTAATCAATCAATCAATCGATG 59.200 38.462 0.00 0.00 30.13 3.84
1288 1372 6.347969 CGCACCTAATCAATCAATCAATCGAT 60.348 38.462 0.00 0.00 0.00 3.59
1290 1374 5.142265 CGCACCTAATCAATCAATCAATCG 58.858 41.667 0.00 0.00 0.00 3.34
1291 1375 5.911280 CACGCACCTAATCAATCAATCAATC 59.089 40.000 0.00 0.00 0.00 2.67
1292 1376 5.589855 TCACGCACCTAATCAATCAATCAAT 59.410 36.000 0.00 0.00 0.00 2.57
1350 1485 6.670902 ACAAAGATGAGGGGAAATCAATCAAT 59.329 34.615 0.00 0.00 0.00 2.57
1402 1541 5.487488 TCATCCTCCATTGTAGTTGTAGGTT 59.513 40.000 0.00 0.00 0.00 3.50
1404 1543 5.614324 TCATCCTCCATTGTAGTTGTAGG 57.386 43.478 0.00 0.00 0.00 3.18
1405 1544 6.644347 AGTTCATCCTCCATTGTAGTTGTAG 58.356 40.000 0.00 0.00 0.00 2.74
1407 1546 5.013079 TGAGTTCATCCTCCATTGTAGTTGT 59.987 40.000 0.00 0.00 0.00 3.32
1410 1549 4.383552 GCTGAGTTCATCCTCCATTGTAGT 60.384 45.833 0.00 0.00 0.00 2.73
1475 1724 5.153950 TCCCAGAAAAGAGAAGCTACTTC 57.846 43.478 0.00 0.00 40.45 3.01
1513 1779 2.103771 AGCAGAGGTGTGTATGCCTATG 59.896 50.000 0.00 0.00 44.42 2.23
1514 1780 2.402564 AGCAGAGGTGTGTATGCCTAT 58.597 47.619 0.00 0.00 39.51 2.57
1517 1783 1.740025 GAAAGCAGAGGTGTGTATGCC 59.260 52.381 0.00 0.00 39.51 4.40
1518 1784 2.160417 GTGAAAGCAGAGGTGTGTATGC 59.840 50.000 0.00 0.00 38.97 3.14
1548 1814 4.093472 TCGGTTCTGAATCCTTTCCAAA 57.907 40.909 0.00 0.00 0.00 3.28
1549 1815 3.780804 TCGGTTCTGAATCCTTTCCAA 57.219 42.857 0.00 0.00 0.00 3.53
1550 1816 3.780804 TTCGGTTCTGAATCCTTTCCA 57.219 42.857 0.00 0.00 0.00 3.53
1551 1817 3.120304 CGTTTCGGTTCTGAATCCTTTCC 60.120 47.826 0.00 0.00 0.00 3.13
1552 1818 3.497262 ACGTTTCGGTTCTGAATCCTTTC 59.503 43.478 0.00 0.00 0.00 2.62
1562 1828 3.144506 TCTCTCTACACGTTTCGGTTCT 58.855 45.455 0.00 0.00 0.00 3.01
1590 1856 2.926778 ATCAGCTAGATGTGGAAGGC 57.073 50.000 8.04 0.00 35.06 4.35
1675 1943 5.881923 ATGGCATGGATAAGCTGATTTTT 57.118 34.783 0.00 0.00 0.00 1.94
1679 1947 4.202535 TGAGAATGGCATGGATAAGCTGAT 60.203 41.667 0.00 0.00 0.00 2.90
1701 1969 3.036091 AGAAAGCCATTTCCCATCCATG 58.964 45.455 0.00 0.00 45.01 3.66
1716 1984 0.957362 AGCAGGTGAAGCAAGAAAGC 59.043 50.000 0.00 0.00 0.00 3.51
1731 1999 8.905702 GTTTATTATGTTGACAGAAACAAGCAG 58.094 33.333 0.00 0.00 42.98 4.24
1753 2021 6.390048 TGGGGTACAATACAATCCAGTTTA 57.610 37.500 0.00 0.00 0.00 2.01
1754 2022 5.263872 TGGGGTACAATACAATCCAGTTT 57.736 39.130 0.00 0.00 0.00 2.66
1775 2081 7.715686 CAGAGGTCATATGGATATGGATGAATG 59.284 40.741 2.13 0.00 40.35 2.67
1776 2082 7.626487 TCAGAGGTCATATGGATATGGATGAAT 59.374 37.037 2.13 0.00 40.35 2.57
1777 2083 6.961721 TCAGAGGTCATATGGATATGGATGAA 59.038 38.462 2.13 0.00 40.35 2.57
1778 2084 6.382282 GTCAGAGGTCATATGGATATGGATGA 59.618 42.308 2.13 0.00 40.35 2.92
1841 2190 2.162681 GCACCTACCGTACCCGTATAT 58.837 52.381 0.00 0.00 0.00 0.86
1842 2191 1.142870 AGCACCTACCGTACCCGTATA 59.857 52.381 0.00 0.00 0.00 1.47
1843 2192 0.106519 AGCACCTACCGTACCCGTAT 60.107 55.000 0.00 0.00 0.00 3.06
1844 2193 0.323360 AAGCACCTACCGTACCCGTA 60.323 55.000 0.00 0.00 0.00 4.02
1845 2194 1.598701 GAAGCACCTACCGTACCCGT 61.599 60.000 0.00 0.00 0.00 5.28
1846 2195 1.140375 GAAGCACCTACCGTACCCG 59.860 63.158 0.00 0.00 0.00 5.28
1847 2196 0.828677 ATGAAGCACCTACCGTACCC 59.171 55.000 0.00 0.00 0.00 3.69
1876 2229 1.654954 GCAGAGCAGAGGCCATTGTG 61.655 60.000 5.01 0.00 42.56 3.33
1889 2242 3.376918 GTTGGGCTTGGGCAGAGC 61.377 66.667 3.04 3.04 40.87 4.09
1891 2244 3.080158 TTGGTTGGGCTTGGGCAGA 62.080 57.895 0.00 0.00 40.87 4.26
1892 2245 2.523902 TTGGTTGGGCTTGGGCAG 60.524 61.111 0.00 0.00 40.87 4.85
1893 2246 2.841988 GTTGGTTGGGCTTGGGCA 60.842 61.111 0.00 0.00 40.87 5.36
1894 2247 2.381838 CTTGTTGGTTGGGCTTGGGC 62.382 60.000 0.00 0.00 37.82 5.36
1896 2249 0.829990 AACTTGTTGGTTGGGCTTGG 59.170 50.000 0.00 0.00 0.00 3.61
1898 2251 0.177836 GCAACTTGTTGGTTGGGCTT 59.822 50.000 14.30 0.00 44.55 4.35
1899 2252 1.685355 GGCAACTTGTTGGTTGGGCT 61.685 55.000 14.30 0.00 44.55 5.19
1919 2298 5.414454 TGGTCAAATCTGTCTATTTTTCCCG 59.586 40.000 0.00 0.00 0.00 5.14
1975 2355 2.740981 GAGTGAAAGCATGAGTGACAGG 59.259 50.000 0.00 0.00 0.00 4.00
2051 2431 1.561076 ACCTAGATCATGGTGCAGCAA 59.439 47.619 24.18 7.84 34.90 3.91
2052 2432 1.134310 CACCTAGATCATGGTGCAGCA 60.134 52.381 22.56 22.56 45.68 4.41
2114 2494 8.680903 CAATCAATTAGCTCACCTTACAAGATT 58.319 33.333 0.00 0.00 0.00 2.40
2146 2526 2.432444 TGTTGATTGGTAAGGCGAAGG 58.568 47.619 0.00 0.00 0.00 3.46
2157 2537 0.522626 TCGTGCTGCATGTTGATTGG 59.477 50.000 20.33 0.00 0.00 3.16
2158 2538 2.334971 TTCGTGCTGCATGTTGATTG 57.665 45.000 20.33 0.00 0.00 2.67
2159 2539 2.034432 TGTTTCGTGCTGCATGTTGATT 59.966 40.909 20.33 0.00 0.00 2.57
2160 2540 1.608109 TGTTTCGTGCTGCATGTTGAT 59.392 42.857 20.33 0.00 0.00 2.57
2161 2541 1.020437 TGTTTCGTGCTGCATGTTGA 58.980 45.000 20.33 7.17 0.00 3.18
2162 2542 1.122849 GTGTTTCGTGCTGCATGTTG 58.877 50.000 20.33 4.95 0.00 3.33
2163 2543 0.737804 TGTGTTTCGTGCTGCATGTT 59.262 45.000 20.33 0.00 0.00 2.71
2164 2544 0.953727 ATGTGTTTCGTGCTGCATGT 59.046 45.000 20.33 0.00 0.00 3.21
2165 2545 1.333115 CATGTGTTTCGTGCTGCATG 58.667 50.000 15.59 15.59 0.00 4.06
2166 2546 3.778969 CATGTGTTTCGTGCTGCAT 57.221 47.368 5.27 0.00 0.00 3.96
2172 2552 1.333308 TCTGGTTGCATGTGTTTCGTG 59.667 47.619 0.00 0.00 36.25 4.35
2173 2553 1.603802 CTCTGGTTGCATGTGTTTCGT 59.396 47.619 0.00 0.00 0.00 3.85
2174 2554 1.603802 ACTCTGGTTGCATGTGTTTCG 59.396 47.619 0.00 0.00 0.00 3.46
2175 2555 3.715628 AACTCTGGTTGCATGTGTTTC 57.284 42.857 0.00 0.00 33.96 2.78
2176 2556 5.531634 CAATAACTCTGGTTGCATGTGTTT 58.468 37.500 0.00 0.00 36.92 2.83
2177 2557 4.559300 GCAATAACTCTGGTTGCATGTGTT 60.559 41.667 4.60 0.00 45.57 3.32
2178 2558 3.057315 GCAATAACTCTGGTTGCATGTGT 60.057 43.478 4.60 0.00 45.57 3.72
2179 2559 3.504863 GCAATAACTCTGGTTGCATGTG 58.495 45.455 4.60 0.00 45.57 3.21
2180 2560 3.855689 GCAATAACTCTGGTTGCATGT 57.144 42.857 4.60 0.00 45.57 3.21
2184 2564 1.544724 TGGGCAATAACTCTGGTTGC 58.455 50.000 0.97 0.97 45.54 4.17
2185 2565 5.163519 CCTTTATGGGCAATAACTCTGGTTG 60.164 44.000 0.00 0.00 36.92 3.77
2186 2566 4.956075 CCTTTATGGGCAATAACTCTGGTT 59.044 41.667 0.00 0.00 39.26 3.67
2187 2567 4.536765 CCTTTATGGGCAATAACTCTGGT 58.463 43.478 0.00 0.00 30.21 4.00
2200 2580 4.263068 CCCACTATGACTAGCCTTTATGGG 60.263 50.000 5.53 5.53 37.32 4.00
2201 2581 4.263068 CCCCACTATGACTAGCCTTTATGG 60.263 50.000 0.00 0.00 39.35 2.74
2202 2582 4.593206 TCCCCACTATGACTAGCCTTTATG 59.407 45.833 0.00 0.00 0.00 1.90
2203 2583 4.827789 TCCCCACTATGACTAGCCTTTAT 58.172 43.478 0.00 0.00 0.00 1.40
2204 2584 4.223953 CTCCCCACTATGACTAGCCTTTA 58.776 47.826 0.00 0.00 0.00 1.85
2205 2585 3.041946 CTCCCCACTATGACTAGCCTTT 58.958 50.000 0.00 0.00 0.00 3.11
2206 2586 2.022918 ACTCCCCACTATGACTAGCCTT 60.023 50.000 0.00 0.00 0.00 4.35
2207 2587 1.576272 ACTCCCCACTATGACTAGCCT 59.424 52.381 0.00 0.00 0.00 4.58
2212 2592 6.088541 TCTAAGTTACTCCCCACTATGACT 57.911 41.667 0.00 0.00 0.00 3.41
2223 2603 7.701501 GTGCATGTTACTACTCTAAGTTACTCC 59.298 40.741 0.00 0.00 31.82 3.85
2246 2626 9.448294 GTAGTAACATAGACTAGTAACATGTGC 57.552 37.037 14.07 11.16 30.08 4.57
2273 2653 8.818860 ACACTTATGTTACTACCCACTATGAAA 58.181 33.333 0.00 0.00 34.46 2.69
2325 2705 6.922957 TCCAATGCAAAATGAGTCTACAAAAC 59.077 34.615 0.00 0.00 0.00 2.43
2326 2706 7.048629 TCCAATGCAAAATGAGTCTACAAAA 57.951 32.000 0.00 0.00 0.00 2.44
2341 2721 3.254411 TCACATAACGCTTTCCAATGCAA 59.746 39.130 0.00 0.00 0.00 4.08
2353 2733 6.554334 AATATGGTTACCATCACATAACGC 57.446 37.500 21.27 0.00 40.74 4.84
2370 2750 9.950496 AGAGGCAAATAGAGTAACATAATATGG 57.050 33.333 5.16 0.00 33.60 2.74
2398 2778 9.113838 GATGATGTGTCAAGTAATTAATGAGGT 57.886 33.333 3.16 0.00 38.01 3.85
2408 2788 6.347644 CGCAAAGAAGATGATGTGTCAAGTAA 60.348 38.462 0.00 0.00 38.01 2.24
2415 2795 2.417933 GCTCGCAAAGAAGATGATGTGT 59.582 45.455 0.00 0.00 0.00 3.72
2423 2803 0.608130 TAGGCTGCTCGCAAAGAAGA 59.392 50.000 0.00 0.00 41.67 2.87
2424 2804 1.396301 CTTAGGCTGCTCGCAAAGAAG 59.604 52.381 0.00 0.00 41.67 2.85
2425 2805 1.001974 TCTTAGGCTGCTCGCAAAGAA 59.998 47.619 0.00 0.00 38.46 2.52
2426 2806 0.608130 TCTTAGGCTGCTCGCAAAGA 59.392 50.000 0.00 9.71 41.67 2.52
2427 2807 1.661341 ATCTTAGGCTGCTCGCAAAG 58.339 50.000 0.00 0.00 41.67 2.77
2433 2813 5.048434 ACAAGTTTTCAATCTTAGGCTGCTC 60.048 40.000 0.00 0.00 0.00 4.26
2434 2814 4.829492 ACAAGTTTTCAATCTTAGGCTGCT 59.171 37.500 0.00 0.00 0.00 4.24
2435 2815 4.919754 CACAAGTTTTCAATCTTAGGCTGC 59.080 41.667 0.00 0.00 0.00 5.25
2436 2816 5.241506 TCCACAAGTTTTCAATCTTAGGCTG 59.758 40.000 0.00 0.00 0.00 4.85
2437 2817 5.385198 TCCACAAGTTTTCAATCTTAGGCT 58.615 37.500 0.00 0.00 0.00 4.58
2438 2818 5.705609 TCCACAAGTTTTCAATCTTAGGC 57.294 39.130 0.00 0.00 0.00 3.93
2439 2819 7.362401 CCTCATCCACAAGTTTTCAATCTTAGG 60.362 40.741 0.00 0.00 0.00 2.69
2440 2820 7.362401 CCCTCATCCACAAGTTTTCAATCTTAG 60.362 40.741 0.00 0.00 0.00 2.18
2459 2930 0.108804 TCGTTCGCTTGACCCTCATC 60.109 55.000 0.00 0.00 0.00 2.92
2468 2939 3.777925 CCGTGCCTCGTTCGCTTG 61.778 66.667 0.00 0.00 37.94 4.01
2511 2982 3.250744 TCCAAATGAGTAAGACGCGAAG 58.749 45.455 15.93 0.00 0.00 3.79
2515 2986 6.183309 AGAATTTCCAAATGAGTAAGACGC 57.817 37.500 0.00 0.00 0.00 5.19
2563 3034 2.024273 TGTAGTACTCCCTCCTTCCAGG 60.024 54.545 0.00 0.00 36.46 4.45
2569 3040 4.062490 ACAATGTGTAGTACTCCCTCCT 57.938 45.455 0.00 0.00 0.00 3.69
2583 3054 7.313646 ACAAGCACTAGTAGTAGTACAATGTG 58.686 38.462 9.94 14.18 37.40 3.21
2598 3069 2.735663 CAGCTGAACAGACAAGCACTAG 59.264 50.000 8.42 0.00 0.00 2.57
2641 3116 1.402984 CGCTTCCACTGGTACTGAGAC 60.403 57.143 0.00 0.00 0.00 3.36
2645 3159 2.002586 CATTCGCTTCCACTGGTACTG 58.997 52.381 0.00 0.00 0.00 2.74
2651 3165 1.063616 CAGCATCATTCGCTTCCACTG 59.936 52.381 0.00 0.00 37.72 3.66
2660 3174 0.101579 TGGCAATGCAGCATCATTCG 59.898 50.000 8.77 0.00 34.68 3.34
2676 3190 1.069358 GGGAGCAGTAGAGTGTATGGC 59.931 57.143 0.00 0.00 0.00 4.40
2677 3191 2.625790 GAGGGAGCAGTAGAGTGTATGG 59.374 54.545 0.00 0.00 0.00 2.74
2681 3196 0.681564 CGGAGGGAGCAGTAGAGTGT 60.682 60.000 0.00 0.00 0.00 3.55
2713 3228 1.153958 GCTGGCTGATTTTGCGACC 60.154 57.895 0.00 0.00 0.00 4.79
2835 3391 9.853177 CAGAGGAACCCTTGTAATTAATTAGAT 57.147 33.333 8.18 0.00 31.76 1.98
2836 3392 8.832735 ACAGAGGAACCCTTGTAATTAATTAGA 58.167 33.333 8.18 4.56 31.76 2.10
2840 3399 8.721133 AAAACAGAGGAACCCTTGTAATTAAT 57.279 30.769 0.00 0.00 31.76 1.40
2841 3400 7.231925 GGAAAACAGAGGAACCCTTGTAATTAA 59.768 37.037 0.00 0.00 31.76 1.40
2849 3408 3.566351 CAAGGAAAACAGAGGAACCCTT 58.434 45.455 0.00 0.00 31.76 3.95
2853 3412 2.287849 GCAGCAAGGAAAACAGAGGAAC 60.288 50.000 0.00 0.00 0.00 3.62
2862 3421 4.219725 GGTAAATACCTGCAGCAAGGAAAA 59.780 41.667 8.66 3.86 43.10 2.29
2914 3473 0.615850 AGGGGTAAGCTTCTGTGAGC 59.384 55.000 0.00 0.00 43.02 4.26
2977 3536 7.395489 AGAAAGGCTTACATCTCATCAACATTT 59.605 33.333 0.00 0.00 0.00 2.32
2983 3542 6.715280 AGAAAGAAAGGCTTACATCTCATCA 58.285 36.000 0.00 0.00 35.24 3.07
3008 3567 4.399004 TGGTTGGTTTGTGAAATGAAGG 57.601 40.909 0.00 0.00 0.00 3.46
3074 3641 1.076332 CGGACCTGAACAAATCGACC 58.924 55.000 0.00 0.00 0.00 4.79
3098 3665 2.408271 TGATCACATCCAAGCAGACC 57.592 50.000 0.00 0.00 0.00 3.85
3227 3827 1.102809 TGCCACAACAGCAGGACAAG 61.103 55.000 0.00 0.00 34.69 3.16
3239 3839 2.363306 ATTCACAAGGTCTGCCACAA 57.637 45.000 0.00 0.00 37.19 3.33
3242 3842 4.574674 AAGATATTCACAAGGTCTGCCA 57.425 40.909 0.00 0.00 37.19 4.92
3243 3843 4.943705 TCAAAGATATTCACAAGGTCTGCC 59.056 41.667 0.00 0.00 0.00 4.85
3536 4146 2.124653 TCCTCGTCGCTCTCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
3602 4212 1.367471 CAGTCAAGGGTCTGCGTGA 59.633 57.895 0.00 0.00 0.00 4.35
3616 4226 1.202855 CCATCCATCCATCCACCAGTC 60.203 57.143 0.00 0.00 0.00 3.51
3675 4293 5.948758 AGACAGACTGACAGAGATACATGAA 59.051 40.000 10.08 0.00 0.00 2.57
3676 4294 5.504853 AGACAGACTGACAGAGATACATGA 58.495 41.667 10.08 0.00 0.00 3.07
3677 4295 5.833406 AGACAGACTGACAGAGATACATG 57.167 43.478 10.08 0.00 0.00 3.21
3691 4309 2.098280 CGCAGCTATGTACAGACAGACT 59.902 50.000 0.33 0.00 39.50 3.24
3773 4394 1.825474 CGAGAGCTAGGGGAACTGAAA 59.175 52.381 0.00 0.00 0.00 2.69
3775 4396 0.331954 ACGAGAGCTAGGGGAACTGA 59.668 55.000 0.00 0.00 0.00 3.41
3778 4399 0.456628 GACACGAGAGCTAGGGGAAC 59.543 60.000 0.00 0.00 0.00 3.62
3780 4401 1.451567 CGACACGAGAGCTAGGGGA 60.452 63.158 0.00 0.00 0.00 4.81
3781 4402 3.111939 CGACACGAGAGCTAGGGG 58.888 66.667 0.00 0.00 0.00 4.79
3782 4403 2.409651 GCGACACGAGAGCTAGGG 59.590 66.667 0.00 0.00 0.00 3.53
3793 4414 0.917648 CAACAACAACGACGCGACAC 60.918 55.000 15.93 2.51 0.00 3.67
3797 4418 0.519586 ACAACAACAACAACGACGCG 60.520 50.000 3.53 3.53 0.00 6.01
3798 4419 1.176838 GACAACAACAACAACGACGC 58.823 50.000 0.00 0.00 0.00 5.19
3800 4421 2.159814 TGACGACAACAACAACAACGAC 60.160 45.455 0.00 0.00 0.00 4.34
3805 4426 2.272678 ACGATGACGACAACAACAACA 58.727 42.857 0.00 0.00 42.66 3.33
3808 4429 1.125270 CGACGATGACGACAACAACA 58.875 50.000 0.00 0.00 42.66 3.33
3811 4432 0.308376 TGACGACGATGACGACAACA 59.692 50.000 0.00 0.00 42.66 3.33
3813 4434 1.466866 GGATGACGACGATGACGACAA 60.467 52.381 0.00 0.00 42.66 3.18
3814 4435 0.098200 GGATGACGACGATGACGACA 59.902 55.000 0.00 0.00 42.66 4.35
3820 4441 0.455815 TCACAGGGATGACGACGATG 59.544 55.000 0.00 0.00 0.00 3.84
3821 4442 1.182667 TTCACAGGGATGACGACGAT 58.817 50.000 0.00 0.00 0.00 3.73
3823 4444 2.858344 GTTATTCACAGGGATGACGACG 59.142 50.000 0.00 0.00 0.00 5.12
3828 4449 3.010027 TGGCAAGTTATTCACAGGGATGA 59.990 43.478 0.00 0.00 0.00 2.92
3829 4450 3.355378 TGGCAAGTTATTCACAGGGATG 58.645 45.455 0.00 0.00 0.00 3.51
3830 4451 3.737559 TGGCAAGTTATTCACAGGGAT 57.262 42.857 0.00 0.00 0.00 3.85
3831 4452 3.737559 ATGGCAAGTTATTCACAGGGA 57.262 42.857 0.00 0.00 0.00 4.20
3832 4453 4.021192 ACAAATGGCAAGTTATTCACAGGG 60.021 41.667 0.00 0.00 0.00 4.45
3833 4454 5.138125 ACAAATGGCAAGTTATTCACAGG 57.862 39.130 0.00 0.00 0.00 4.00
3904 4530 9.956720 ACTGAAAATGAATTAACAGAACAGAAG 57.043 29.630 12.89 0.00 31.95 2.85
3950 4576 5.221009 GCAGAGGAGATTTAAATTCAGCTGG 60.221 44.000 15.13 0.00 0.00 4.85
3952 4578 5.503927 TGCAGAGGAGATTTAAATTCAGCT 58.496 37.500 13.06 2.75 0.00 4.24
3968 4621 0.035725 TTCAGCTGGACATGCAGAGG 60.036 55.000 15.13 0.00 0.00 3.69
4052 4711 6.716173 TGTTTGGATCTGAACTCATGATTCAA 59.284 34.615 16.29 7.95 35.70 2.69
4053 4712 6.149973 GTGTTTGGATCTGAACTCATGATTCA 59.850 38.462 15.32 15.32 34.89 2.57
4054 4713 6.549952 GTGTTTGGATCTGAACTCATGATTC 58.450 40.000 0.00 3.56 0.00 2.52
4055 4714 5.122869 CGTGTTTGGATCTGAACTCATGATT 59.877 40.000 0.00 0.00 0.00 2.57
4056 4715 4.633126 CGTGTTTGGATCTGAACTCATGAT 59.367 41.667 0.00 0.00 0.00 2.45
4057 4716 3.996363 CGTGTTTGGATCTGAACTCATGA 59.004 43.478 0.00 0.00 0.00 3.07
4058 4717 3.996363 TCGTGTTTGGATCTGAACTCATG 59.004 43.478 11.26 0.00 0.00 3.07
4059 4718 4.271696 TCGTGTTTGGATCTGAACTCAT 57.728 40.909 11.26 0.00 0.00 2.90
4060 4719 3.744238 TCGTGTTTGGATCTGAACTCA 57.256 42.857 11.26 0.00 0.00 3.41
4061 4720 4.932200 AGATTCGTGTTTGGATCTGAACTC 59.068 41.667 11.26 7.91 0.00 3.01
4076 4735 5.535043 TGTGTTCATGATTCAGATTCGTG 57.465 39.130 0.00 7.86 0.00 4.35
4120 4779 6.922247 ATCTAAGTCAATGCTGATGTTCAG 57.078 37.500 0.08 0.08 46.90 3.02
4121 4780 7.330262 TGTATCTAAGTCAATGCTGATGTTCA 58.670 34.615 0.00 0.00 33.05 3.18
4122 4781 7.776933 TGTATCTAAGTCAATGCTGATGTTC 57.223 36.000 0.00 0.00 33.05 3.18
4123 4782 8.743085 AATGTATCTAAGTCAATGCTGATGTT 57.257 30.769 0.00 0.00 33.05 2.71
4127 4786 7.785033 TCTGAATGTATCTAAGTCAATGCTGA 58.215 34.615 0.00 0.00 0.00 4.26
4128 4787 8.604640 ATCTGAATGTATCTAAGTCAATGCTG 57.395 34.615 0.00 0.00 0.00 4.41
4131 4790 9.551734 TCCAATCTGAATGTATCTAAGTCAATG 57.448 33.333 0.00 0.00 0.00 2.82
4168 4827 6.714278 TCATCTCAAACAATTCAGGATCTGA 58.286 36.000 0.00 0.00 38.87 3.27
4169 4828 6.822170 TCTCATCTCAAACAATTCAGGATCTG 59.178 38.462 0.00 0.00 0.00 2.90
4170 4829 6.955364 TCTCATCTCAAACAATTCAGGATCT 58.045 36.000 0.00 0.00 0.00 2.75
4171 4830 7.041235 GGATCTCATCTCAAACAATTCAGGATC 60.041 40.741 0.00 0.00 0.00 3.36
4172 4831 6.771749 GGATCTCATCTCAAACAATTCAGGAT 59.228 38.462 0.00 0.00 0.00 3.24
4173 4832 6.118170 GGATCTCATCTCAAACAATTCAGGA 58.882 40.000 0.00 0.00 0.00 3.86
4174 4833 5.884232 TGGATCTCATCTCAAACAATTCAGG 59.116 40.000 0.00 0.00 0.00 3.86
4175 4834 6.997239 TGGATCTCATCTCAAACAATTCAG 57.003 37.500 0.00 0.00 0.00 3.02
4176 4835 7.612633 TGAATGGATCTCATCTCAAACAATTCA 59.387 33.333 0.00 0.00 34.44 2.57
4177 4836 7.993101 TGAATGGATCTCATCTCAAACAATTC 58.007 34.615 0.00 0.00 34.44 2.17
4178 4837 7.832685 TCTGAATGGATCTCATCTCAAACAATT 59.167 33.333 0.00 0.00 34.44 2.32
4179 4838 7.344134 TCTGAATGGATCTCATCTCAAACAAT 58.656 34.615 0.00 0.00 34.44 2.71
4180 4839 6.714278 TCTGAATGGATCTCATCTCAAACAA 58.286 36.000 0.00 0.00 34.44 2.83
4181 4840 6.303903 TCTGAATGGATCTCATCTCAAACA 57.696 37.500 0.00 0.00 34.44 2.83
4182 4841 6.427547 GGATCTGAATGGATCTCATCTCAAAC 59.572 42.308 0.00 0.00 41.15 2.93
4183 4842 6.329460 AGGATCTGAATGGATCTCATCTCAAA 59.671 38.462 0.00 0.00 41.15 2.69
4184 4843 5.845065 AGGATCTGAATGGATCTCATCTCAA 59.155 40.000 0.00 0.00 41.15 3.02
4356 5015 2.034879 CGTGGCATGCTTCTTCCGT 61.035 57.895 18.92 0.00 0.00 4.69
4512 5171 1.138883 CGAGGATGAGAAACGGCGA 59.861 57.895 16.62 0.00 0.00 5.54
4518 5177 1.135373 GTGCTCGTCGAGGATGAGAAA 60.135 52.381 23.09 3.53 45.52 2.52
4520 5179 1.377366 GGTGCTCGTCGAGGATGAGA 61.377 60.000 23.09 2.15 45.52 3.27
4521 5180 1.064946 GGTGCTCGTCGAGGATGAG 59.935 63.158 23.09 9.88 45.46 2.90
4524 5183 2.418910 CCAGGTGCTCGTCGAGGAT 61.419 63.158 23.09 4.17 31.72 3.24
4527 5186 2.487428 CTCCAGGTGCTCGTCGAG 59.513 66.667 18.08 18.08 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.