Multiple sequence alignment - TraesCS5B01G565900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G565900 chr5B 100.000 3077 0 0 1 3077 710592159 710595235 0.000000e+00 5683.0
1 TraesCS5B01G565900 chr5B 94.845 97 3 2 471 567 710592578 710592672 1.910000e-32 150.0
2 TraesCS5B01G565900 chr5B 94.845 97 3 2 420 514 710592629 710592725 1.910000e-32 150.0
3 TraesCS5B01G565900 chr5B 84.848 66 9 1 2400 2465 460760534 460760470 7.120000e-07 65.8
4 TraesCS5B01G565900 chr4A 90.338 1035 84 10 688 1715 604595999 604594974 0.000000e+00 1343.0
5 TraesCS5B01G565900 chr4A 88.978 499 37 11 1892 2385 604594972 604594487 4.390000e-168 601.0
6 TraesCS5B01G565900 chr4A 83.652 575 72 17 2504 3073 604594430 604593873 3.520000e-144 521.0
7 TraesCS5B01G565900 chr4A 85.484 124 12 5 786 909 604596261 604596144 1.160000e-24 124.0
8 TraesCS5B01G565900 chr4A 82.759 87 11 3 299 383 542806241 542806157 1.180000e-09 75.0
9 TraesCS5B01G565900 chr3B 92.265 362 25 2 2717 3077 822875218 822874859 7.610000e-141 510.0
10 TraesCS5B01G565900 chr3B 95.638 298 11 1 1 298 118649352 118649647 7.720000e-131 477.0
11 TraesCS5B01G565900 chr3B 95.638 298 10 1 1 298 78874755 78875049 2.780000e-130 475.0
12 TraesCS5B01G565900 chr3B 89.368 348 18 3 2352 2680 822875563 822875216 1.320000e-113 420.0
13 TraesCS5B01G565900 chr3B 87.900 281 24 8 2069 2342 822875890 822875613 3.830000e-84 322.0
14 TraesCS5B01G565900 chr3B 89.441 161 15 2 1916 2075 822877541 822877382 5.200000e-48 202.0
15 TraesCS5B01G565900 chr7B 95.973 298 12 0 1 298 560565959 560565662 4.610000e-133 484.0
16 TraesCS5B01G565900 chr7B 94.983 299 13 2 1 298 84727018 84726721 4.650000e-128 468.0
17 TraesCS5B01G565900 chr7B 94.983 299 12 2 1 298 89795062 89795358 1.670000e-127 466.0
18 TraesCS5B01G565900 chr7B 85.938 64 9 0 318 381 454246218 454246155 5.510000e-08 69.4
19 TraesCS5B01G565900 chr4B 95.623 297 10 2 1 296 353816233 353816527 9.990000e-130 473.0
20 TraesCS5B01G565900 chr4B 74.976 1043 205 24 1022 2018 668873293 668874325 2.190000e-116 429.0
21 TraesCS5B01G565900 chr4B 86.765 68 9 0 2395 2462 463701197 463701264 3.290000e-10 76.8
22 TraesCS5B01G565900 chr4B 92.857 42 2 1 2394 2435 340863320 340863280 3.310000e-05 60.2
23 TraesCS5B01G565900 chr6B 95.302 298 12 1 1 298 369427233 369426938 3.590000e-129 472.0
24 TraesCS5B01G565900 chr6B 94.966 298 13 1 1 298 369422094 369421799 1.670000e-127 466.0
25 TraesCS5B01G565900 chr6B 94.966 298 13 1 1 298 515671594 515671299 1.670000e-127 466.0
26 TraesCS5B01G565900 chr4D 87.879 66 7 1 318 382 30003563 30003628 3.290000e-10 76.8
27 TraesCS5B01G565900 chr2D 92.308 52 4 0 333 384 119073882 119073831 1.180000e-09 75.0
28 TraesCS5B01G565900 chr3D 92.683 41 3 0 2396 2436 512623867 512623907 3.310000e-05 60.2
29 TraesCS5B01G565900 chr1A 97.143 35 1 0 350 384 524145793 524145827 3.310000e-05 60.2
30 TraesCS5B01G565900 chr1B 100.000 28 0 0 2400 2427 502965943 502965970 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G565900 chr5B 710592159 710595235 3076 False 1994.333333 5683 96.563333 1 3077 3 chr5B.!!$F1 3076
1 TraesCS5B01G565900 chr4A 604593873 604596261 2388 True 647.250000 1343 87.113000 688 3073 4 chr4A.!!$R2 2385
2 TraesCS5B01G565900 chr3B 822874859 822877541 2682 True 363.500000 510 89.743500 1916 3077 4 chr3B.!!$R1 1161
3 TraesCS5B01G565900 chr4B 668873293 668874325 1032 False 429.000000 429 74.976000 1022 2018 1 chr4B.!!$F3 996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 323 0.028374 CGCGTTTGGTCGGTTTTTCT 59.972 50.0 0.00 0.0 0.00 2.52 F
1749 1779 0.171903 GCCTGCAATTGCTCGTTGAT 59.828 50.0 29.37 0.0 42.66 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1906 0.041312 GACACCACACGATGCACAAC 60.041 55.0 0.0 0.0 0.0 3.32 R
2681 4335 0.317269 CAGGCTTTGCACAACACGAG 60.317 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.231734 TTCGTTGGCTCACTGGATG 57.768 52.632 0.00 0.00 0.00 3.51
20 21 0.396435 TCGTTGGCTCACTGGATGTT 59.604 50.000 0.00 0.00 0.00 2.71
22 23 1.608590 CGTTGGCTCACTGGATGTTTT 59.391 47.619 0.00 0.00 0.00 2.43
23 24 2.350772 CGTTGGCTCACTGGATGTTTTC 60.351 50.000 0.00 0.00 0.00 2.29
24 25 1.522668 TGGCTCACTGGATGTTTTCG 58.477 50.000 0.00 0.00 0.00 3.46
25 26 0.804989 GGCTCACTGGATGTTTTCGG 59.195 55.000 0.00 0.00 0.00 4.30
26 27 0.804989 GCTCACTGGATGTTTTCGGG 59.195 55.000 0.00 0.00 0.00 5.14
27 28 1.453155 CTCACTGGATGTTTTCGGGG 58.547 55.000 0.00 0.00 0.00 5.73
28 29 0.768622 TCACTGGATGTTTTCGGGGT 59.231 50.000 0.00 0.00 0.00 4.95
29 30 1.979308 TCACTGGATGTTTTCGGGGTA 59.021 47.619 0.00 0.00 0.00 3.69
30 31 2.081462 CACTGGATGTTTTCGGGGTAC 58.919 52.381 0.00 0.00 0.00 3.34
31 32 1.338389 ACTGGATGTTTTCGGGGTACG 60.338 52.381 0.00 0.00 46.11 3.67
33 34 1.898472 TGGATGTTTTCGGGGTACGTA 59.102 47.619 0.00 0.00 44.69 3.57
34 35 2.094078 TGGATGTTTTCGGGGTACGTAG 60.094 50.000 0.00 0.00 44.69 3.51
35 36 2.543641 GATGTTTTCGGGGTACGTAGG 58.456 52.381 0.00 0.00 44.69 3.18
38 39 0.975887 TTTTCGGGGTACGTAGGCTT 59.024 50.000 0.00 0.00 44.69 4.35
39 40 1.846007 TTTCGGGGTACGTAGGCTTA 58.154 50.000 0.00 0.00 44.69 3.09
40 41 2.071778 TTCGGGGTACGTAGGCTTAT 57.928 50.000 0.00 0.00 44.69 1.73
41 42 2.949177 TCGGGGTACGTAGGCTTATA 57.051 50.000 0.00 0.00 44.69 0.98
44 45 4.517285 TCGGGGTACGTAGGCTTATATAG 58.483 47.826 0.00 0.00 44.69 1.31
45 46 3.629398 CGGGGTACGTAGGCTTATATAGG 59.371 52.174 0.00 0.00 37.93 2.57
46 47 4.626287 CGGGGTACGTAGGCTTATATAGGA 60.626 50.000 0.00 0.00 37.93 2.94
47 48 4.886489 GGGGTACGTAGGCTTATATAGGAG 59.114 50.000 0.00 0.00 0.00 3.69
48 49 4.886489 GGGTACGTAGGCTTATATAGGAGG 59.114 50.000 0.00 0.00 0.00 4.30
49 50 5.339530 GGGTACGTAGGCTTATATAGGAGGA 60.340 48.000 0.00 0.00 0.00 3.71
50 51 6.183347 GGTACGTAGGCTTATATAGGAGGAA 58.817 44.000 0.00 0.00 0.00 3.36
51 52 6.318396 GGTACGTAGGCTTATATAGGAGGAAG 59.682 46.154 0.00 0.00 0.00 3.46
52 53 6.137104 ACGTAGGCTTATATAGGAGGAAGA 57.863 41.667 0.00 0.00 0.00 2.87
53 54 6.550163 ACGTAGGCTTATATAGGAGGAAGAA 58.450 40.000 0.00 0.00 0.00 2.52
54 55 6.660094 ACGTAGGCTTATATAGGAGGAAGAAG 59.340 42.308 0.00 0.00 0.00 2.85
55 56 6.660094 CGTAGGCTTATATAGGAGGAAGAAGT 59.340 42.308 0.00 0.00 0.00 3.01
56 57 7.828223 CGTAGGCTTATATAGGAGGAAGAAGTA 59.172 40.741 0.00 0.00 0.00 2.24
57 58 8.959548 GTAGGCTTATATAGGAGGAAGAAGTAC 58.040 40.741 0.00 0.00 0.00 2.73
59 60 6.433716 GGCTTATATAGGAGGAAGAAGTACGT 59.566 42.308 0.00 0.00 0.00 3.57
60 61 7.361971 GGCTTATATAGGAGGAAGAAGTACGTC 60.362 44.444 0.00 0.00 0.00 4.34
63 64 1.172175 GGAGGAAGAAGTACGTCGGT 58.828 55.000 3.05 0.00 0.00 4.69
64 65 1.135460 GGAGGAAGAAGTACGTCGGTG 60.135 57.143 3.05 0.00 0.00 4.94
65 66 0.886563 AGGAAGAAGTACGTCGGTGG 59.113 55.000 3.05 0.00 0.00 4.61
67 68 0.735287 GAAGAAGTACGTCGGTGGCC 60.735 60.000 0.00 0.00 0.00 5.36
87 88 3.411517 CCGAGGGGCCCACAAGAT 61.412 66.667 27.72 1.17 0.00 2.40
88 89 2.070039 CCGAGGGGCCCACAAGATA 61.070 63.158 27.72 0.00 0.00 1.98
89 90 1.447643 CGAGGGGCCCACAAGATAG 59.552 63.158 27.72 0.00 0.00 2.08
90 91 1.839894 GAGGGGCCCACAAGATAGG 59.160 63.158 27.72 0.00 0.00 2.57
93 94 2.768022 GGGCCCACAAGATAGGGGG 61.768 68.421 19.95 0.00 45.58 5.40
96 97 2.203209 CCACAAGATAGGGGGCGC 60.203 66.667 0.00 0.00 0.00 6.53
97 98 2.588877 CACAAGATAGGGGGCGCG 60.589 66.667 0.00 0.00 0.00 6.86
98 99 4.547367 ACAAGATAGGGGGCGCGC 62.547 66.667 25.94 25.94 0.00 6.86
126 127 3.224324 TGGACGCGCCCTCCTATC 61.224 66.667 14.09 0.00 34.97 2.08
127 128 2.913060 GGACGCGCCCTCCTATCT 60.913 66.667 5.73 0.00 0.00 1.98
128 129 2.646143 GACGCGCCCTCCTATCTC 59.354 66.667 5.73 0.00 0.00 2.75
129 130 3.256716 GACGCGCCCTCCTATCTCG 62.257 68.421 5.73 0.00 0.00 4.04
130 131 3.288290 CGCGCCCTCCTATCTCGT 61.288 66.667 0.00 0.00 0.00 4.18
131 132 2.336809 GCGCCCTCCTATCTCGTG 59.663 66.667 0.00 0.00 0.00 4.35
132 133 3.043419 CGCCCTCCTATCTCGTGG 58.957 66.667 0.00 0.00 0.00 4.94
133 134 2.737830 GCCCTCCTATCTCGTGGC 59.262 66.667 0.00 0.00 0.00 5.01
134 135 2.873525 GCCCTCCTATCTCGTGGCC 61.874 68.421 0.00 0.00 32.74 5.36
135 136 2.565645 CCCTCCTATCTCGTGGCCG 61.566 68.421 0.00 0.00 0.00 6.13
136 137 2.336809 CTCCTATCTCGTGGCCGC 59.663 66.667 6.11 6.11 0.00 6.53
137 138 3.214250 CTCCTATCTCGTGGCCGCC 62.214 68.421 11.56 1.04 0.00 6.13
138 139 3.227276 CCTATCTCGTGGCCGCCT 61.227 66.667 11.56 0.00 0.00 5.52
139 140 2.336809 CTATCTCGTGGCCGCCTC 59.663 66.667 11.56 6.14 0.00 4.70
140 141 3.544167 CTATCTCGTGGCCGCCTCG 62.544 68.421 24.54 24.54 41.16 4.63
150 151 4.767255 CCGCCTCGGCTGCTTCTT 62.767 66.667 6.35 0.00 41.17 2.52
151 152 3.494336 CGCCTCGGCTGCTTCTTG 61.494 66.667 6.35 0.00 39.32 3.02
153 154 2.105466 GCCTCGGCTGCTTCTTGAG 61.105 63.158 0.00 0.00 38.26 3.02
154 155 1.294780 CCTCGGCTGCTTCTTGAGT 59.705 57.895 0.00 0.00 0.00 3.41
156 157 0.795085 CTCGGCTGCTTCTTGAGTTG 59.205 55.000 0.00 0.00 0.00 3.16
158 159 1.509644 CGGCTGCTTCTTGAGTTGCA 61.510 55.000 0.00 0.00 0.00 4.08
159 160 0.039708 GGCTGCTTCTTGAGTTGCAC 60.040 55.000 0.00 0.00 0.00 4.57
160 161 0.950116 GCTGCTTCTTGAGTTGCACT 59.050 50.000 0.00 0.00 0.00 4.40
161 162 1.069364 GCTGCTTCTTGAGTTGCACTC 60.069 52.381 8.75 8.75 45.26 3.51
164 165 1.949525 GCTTCTTGAGTTGCACTCCAA 59.050 47.619 11.99 4.35 44.44 3.53
165 166 2.031333 GCTTCTTGAGTTGCACTCCAAG 60.031 50.000 12.44 12.44 44.44 3.61
166 167 3.209410 CTTCTTGAGTTGCACTCCAAGT 58.791 45.455 16.12 0.00 44.44 3.16
170 171 1.802069 GAGTTGCACTCCAAGTCCTC 58.198 55.000 5.33 0.00 44.56 3.71
171 172 1.346068 GAGTTGCACTCCAAGTCCTCT 59.654 52.381 5.33 0.00 44.56 3.69
172 173 1.071385 AGTTGCACTCCAAGTCCTCTG 59.929 52.381 0.00 0.00 31.42 3.35
173 174 0.397941 TTGCACTCCAAGTCCTCTGG 59.602 55.000 0.00 0.00 0.00 3.86
174 175 0.471780 TGCACTCCAAGTCCTCTGGA 60.472 55.000 0.00 0.00 0.00 3.86
175 176 0.908198 GCACTCCAAGTCCTCTGGAT 59.092 55.000 0.00 0.00 32.73 3.41
176 177 1.134551 GCACTCCAAGTCCTCTGGATC 60.135 57.143 0.00 0.00 32.73 3.36
178 179 2.093764 CACTCCAAGTCCTCTGGATCAC 60.094 54.545 0.00 0.00 32.73 3.06
179 180 1.135915 CTCCAAGTCCTCTGGATCACG 59.864 57.143 0.00 0.00 32.73 4.35
180 181 0.898320 CCAAGTCCTCTGGATCACGT 59.102 55.000 0.00 0.00 32.73 4.49
181 182 1.276421 CCAAGTCCTCTGGATCACGTT 59.724 52.381 0.00 0.00 32.73 3.99
182 183 2.611518 CAAGTCCTCTGGATCACGTTC 58.388 52.381 0.00 0.00 32.73 3.95
183 184 0.811915 AGTCCTCTGGATCACGTTCG 59.188 55.000 0.00 0.00 32.73 3.95
185 186 1.067776 GTCCTCTGGATCACGTTCGTT 60.068 52.381 0.00 0.00 32.73 3.85
186 187 1.201647 TCCTCTGGATCACGTTCGTTC 59.798 52.381 0.00 0.00 0.00 3.95
187 188 1.630148 CTCTGGATCACGTTCGTTCC 58.370 55.000 8.55 8.55 0.00 3.62
188 189 0.963225 TCTGGATCACGTTCGTTCCA 59.037 50.000 15.01 15.01 36.81 3.53
189 190 1.341852 TCTGGATCACGTTCGTTCCAA 59.658 47.619 16.09 7.87 37.78 3.53
190 191 2.139917 CTGGATCACGTTCGTTCCAAA 58.860 47.619 16.09 0.27 37.78 3.28
192 193 2.943690 TGGATCACGTTCGTTCCAAAAA 59.056 40.909 13.92 0.00 35.38 1.94
193 194 3.566322 TGGATCACGTTCGTTCCAAAAAT 59.434 39.130 13.92 0.00 35.38 1.82
195 196 4.319911 GGATCACGTTCGTTCCAAAAATCA 60.320 41.667 10.10 0.00 0.00 2.57
196 197 3.942739 TCACGTTCGTTCCAAAAATCAC 58.057 40.909 0.00 0.00 0.00 3.06
197 198 2.711964 CACGTTCGTTCCAAAAATCACG 59.288 45.455 0.00 0.00 0.00 4.35
198 199 1.706597 CGTTCGTTCCAAAAATCACGC 59.293 47.619 0.00 0.00 32.59 5.34
200 201 2.961522 TCGTTCCAAAAATCACGCTC 57.038 45.000 0.00 0.00 32.59 5.03
201 202 1.533731 TCGTTCCAAAAATCACGCTCC 59.466 47.619 0.00 0.00 32.59 4.70
202 203 1.401018 CGTTCCAAAAATCACGCTCCC 60.401 52.381 0.00 0.00 0.00 4.30
203 204 1.611491 GTTCCAAAAATCACGCTCCCA 59.389 47.619 0.00 0.00 0.00 4.37
204 205 1.988293 TCCAAAAATCACGCTCCCAA 58.012 45.000 0.00 0.00 0.00 4.12
205 206 2.311463 TCCAAAAATCACGCTCCCAAA 58.689 42.857 0.00 0.00 0.00 3.28
206 207 2.295909 TCCAAAAATCACGCTCCCAAAG 59.704 45.455 0.00 0.00 0.00 2.77
207 208 2.610232 CCAAAAATCACGCTCCCAAAGG 60.610 50.000 0.00 0.00 0.00 3.11
208 209 1.995376 AAAATCACGCTCCCAAAGGT 58.005 45.000 0.00 0.00 0.00 3.50
209 210 1.995376 AAATCACGCTCCCAAAGGTT 58.005 45.000 0.00 0.00 0.00 3.50
210 211 1.995376 AATCACGCTCCCAAAGGTTT 58.005 45.000 0.00 0.00 0.00 3.27
211 212 1.534729 ATCACGCTCCCAAAGGTTTC 58.465 50.000 0.00 0.00 0.00 2.78
213 214 1.202879 TCACGCTCCCAAAGGTTTCAT 60.203 47.619 0.00 0.00 0.00 2.57
214 215 1.613437 CACGCTCCCAAAGGTTTCATT 59.387 47.619 0.00 0.00 0.00 2.57
215 216 1.886542 ACGCTCCCAAAGGTTTCATTC 59.113 47.619 0.00 0.00 0.00 2.67
217 218 1.202348 GCTCCCAAAGGTTTCATTCCG 59.798 52.381 0.00 0.00 0.00 4.30
221 222 3.068873 TCCCAAAGGTTTCATTCCGTTTG 59.931 43.478 0.00 0.00 0.00 2.93
222 223 3.389221 CCAAAGGTTTCATTCCGTTTGG 58.611 45.455 8.80 8.80 37.15 3.28
223 224 3.068873 CCAAAGGTTTCATTCCGTTTGGA 59.931 43.478 15.17 0.00 44.61 3.53
224 225 4.048504 CAAAGGTTTCATTCCGTTTGGAC 58.951 43.478 0.00 0.00 46.45 4.02
225 226 3.223674 AGGTTTCATTCCGTTTGGACT 57.776 42.857 0.00 0.00 46.45 3.85
226 227 3.146847 AGGTTTCATTCCGTTTGGACTC 58.853 45.455 0.00 0.00 46.45 3.36
228 229 3.058224 GGTTTCATTCCGTTTGGACTCTG 60.058 47.826 0.00 0.00 46.45 3.35
229 230 3.485463 TTCATTCCGTTTGGACTCTGT 57.515 42.857 0.00 0.00 46.45 3.41
232 233 3.563808 TCATTCCGTTTGGACTCTGTTTG 59.436 43.478 0.00 0.00 46.45 2.93
233 234 2.992124 TCCGTTTGGACTCTGTTTGA 57.008 45.000 0.00 0.00 40.17 2.69
234 235 3.485463 TCCGTTTGGACTCTGTTTGAT 57.515 42.857 0.00 0.00 40.17 2.57
237 238 5.556915 TCCGTTTGGACTCTGTTTGATATT 58.443 37.500 0.00 0.00 40.17 1.28
238 239 5.642063 TCCGTTTGGACTCTGTTTGATATTC 59.358 40.000 0.00 0.00 40.17 1.75
239 240 5.163754 CCGTTTGGACTCTGTTTGATATTCC 60.164 44.000 0.00 0.00 37.49 3.01
240 241 5.643777 CGTTTGGACTCTGTTTGATATTCCT 59.356 40.000 0.00 0.00 0.00 3.36
241 242 6.149474 CGTTTGGACTCTGTTTGATATTCCTT 59.851 38.462 0.00 0.00 0.00 3.36
242 243 7.308589 CGTTTGGACTCTGTTTGATATTCCTTT 60.309 37.037 0.00 0.00 0.00 3.11
244 245 7.687941 TGGACTCTGTTTGATATTCCTTTTC 57.312 36.000 0.00 0.00 0.00 2.29
247 248 8.454894 GGACTCTGTTTGATATTCCTTTTCTTC 58.545 37.037 0.00 0.00 0.00 2.87
248 249 8.034058 ACTCTGTTTGATATTCCTTTTCTTCG 57.966 34.615 0.00 0.00 0.00 3.79
249 250 7.878127 ACTCTGTTTGATATTCCTTTTCTTCGA 59.122 33.333 0.00 0.00 0.00 3.71
250 251 8.615878 TCTGTTTGATATTCCTTTTCTTCGAA 57.384 30.769 0.00 0.00 0.00 3.71
251 252 9.062524 TCTGTTTGATATTCCTTTTCTTCGAAA 57.937 29.630 0.00 0.00 0.00 3.46
252 253 9.846248 CTGTTTGATATTCCTTTTCTTCGAAAT 57.154 29.630 0.00 0.00 0.00 2.17
264 265 9.717892 CCTTTTCTTCGAAATACTAAAATAGGC 57.282 33.333 0.00 0.00 0.00 3.93
291 292 2.118313 AACAGTAATACGGGTTGGGC 57.882 50.000 3.42 0.00 0.00 5.36
292 293 0.253894 ACAGTAATACGGGTTGGGCC 59.746 55.000 0.00 0.00 0.00 5.80
293 294 0.544697 CAGTAATACGGGTTGGGCCT 59.455 55.000 4.53 0.00 37.43 5.19
294 295 0.835276 AGTAATACGGGTTGGGCCTC 59.165 55.000 4.53 0.00 37.43 4.70
295 296 0.179037 GTAATACGGGTTGGGCCTCC 60.179 60.000 4.53 7.48 37.43 4.30
302 303 4.410400 GTTGGGCCTCCGGGTCAG 62.410 72.222 4.53 0.00 39.39 3.51
313 314 3.723348 GGGTCAGCGCGTTTGGTC 61.723 66.667 8.43 4.45 0.00 4.02
314 315 4.072088 GGTCAGCGCGTTTGGTCG 62.072 66.667 8.43 0.00 0.00 4.79
315 316 4.072088 GTCAGCGCGTTTGGTCGG 62.072 66.667 8.43 0.00 0.00 4.79
316 317 4.595538 TCAGCGCGTTTGGTCGGT 62.596 61.111 8.43 0.00 36.84 4.69
317 318 3.645975 CAGCGCGTTTGGTCGGTT 61.646 61.111 8.43 0.00 33.93 4.44
318 319 2.898343 AGCGCGTTTGGTCGGTTT 60.898 55.556 8.43 0.00 32.06 3.27
319 320 2.025013 GCGCGTTTGGTCGGTTTT 59.975 55.556 8.43 0.00 0.00 2.43
320 321 1.586826 GCGCGTTTGGTCGGTTTTT 60.587 52.632 8.43 0.00 0.00 1.94
321 322 1.533988 GCGCGTTTGGTCGGTTTTTC 61.534 55.000 8.43 0.00 0.00 2.29
322 323 0.028374 CGCGTTTGGTCGGTTTTTCT 59.972 50.000 0.00 0.00 0.00 2.52
323 324 1.472990 GCGTTTGGTCGGTTTTTCTG 58.527 50.000 0.00 0.00 0.00 3.02
324 325 1.202211 GCGTTTGGTCGGTTTTTCTGT 60.202 47.619 0.00 0.00 0.00 3.41
325 326 2.711885 CGTTTGGTCGGTTTTTCTGTC 58.288 47.619 0.00 0.00 0.00 3.51
326 327 2.540157 CGTTTGGTCGGTTTTTCTGTCC 60.540 50.000 0.00 0.00 0.00 4.02
327 328 1.301423 TTGGTCGGTTTTTCTGTCCG 58.699 50.000 0.00 0.00 44.76 4.79
328 329 1.161563 TGGTCGGTTTTTCTGTCCGC 61.162 55.000 0.00 0.00 43.35 5.54
329 330 1.203313 GTCGGTTTTTCTGTCCGCG 59.797 57.895 0.00 0.00 43.35 6.46
330 331 1.067749 TCGGTTTTTCTGTCCGCGA 59.932 52.632 8.23 0.00 43.35 5.87
331 332 0.320073 TCGGTTTTTCTGTCCGCGAT 60.320 50.000 8.23 0.00 43.35 4.58
332 333 0.179225 CGGTTTTTCTGTCCGCGATG 60.179 55.000 8.23 0.00 37.90 3.84
333 334 1.153353 GGTTTTTCTGTCCGCGATGA 58.847 50.000 8.23 0.00 0.00 2.92
334 335 1.136057 GGTTTTTCTGTCCGCGATGAC 60.136 52.381 8.23 8.32 35.77 3.06
335 336 1.136057 GTTTTTCTGTCCGCGATGACC 60.136 52.381 8.23 0.00 34.25 4.02
336 337 0.672401 TTTTCTGTCCGCGATGACCC 60.672 55.000 8.23 0.00 34.25 4.46
337 338 1.822114 TTTCTGTCCGCGATGACCCA 61.822 55.000 8.23 0.00 34.25 4.51
338 339 1.822114 TTCTGTCCGCGATGACCCAA 61.822 55.000 8.23 0.00 34.25 4.12
339 340 1.375396 CTGTCCGCGATGACCCAAA 60.375 57.895 8.23 0.00 34.25 3.28
340 341 1.635663 CTGTCCGCGATGACCCAAAC 61.636 60.000 8.23 0.00 34.25 2.93
341 342 2.433491 TCCGCGATGACCCAAACG 60.433 61.111 8.23 0.00 0.00 3.60
342 343 3.496131 CCGCGATGACCCAAACGG 61.496 66.667 8.23 0.00 37.81 4.44
343 344 2.433491 CGCGATGACCCAAACGGA 60.433 61.111 0.00 0.00 34.64 4.69
344 345 2.736682 CGCGATGACCCAAACGGAC 61.737 63.158 0.00 0.00 34.64 4.79
345 346 2.736682 GCGATGACCCAAACGGACG 61.737 63.158 0.00 0.00 34.64 4.79
346 347 2.736682 CGATGACCCAAACGGACGC 61.737 63.158 0.00 0.00 34.64 5.19
347 348 1.669760 GATGACCCAAACGGACGCA 60.670 57.895 0.00 0.00 34.64 5.24
348 349 1.908066 GATGACCCAAACGGACGCAC 61.908 60.000 0.00 0.00 34.64 5.34
349 350 3.708734 GACCCAAACGGACGCACG 61.709 66.667 0.00 0.00 40.31 5.34
359 360 3.475774 GACGCACGCGGACGAAAT 61.476 61.111 26.22 7.14 43.93 2.17
360 361 3.680072 GACGCACGCGGACGAAATG 62.680 63.158 26.22 8.09 43.93 2.32
361 362 4.499023 CGCACGCGGACGAAATGG 62.499 66.667 16.69 0.00 43.93 3.16
362 363 4.160635 GCACGCGGACGAAATGGG 62.161 66.667 12.47 0.00 43.93 4.00
363 364 2.740826 CACGCGGACGAAATGGGT 60.741 61.111 12.47 0.00 43.93 4.51
364 365 2.433664 ACGCGGACGAAATGGGTC 60.434 61.111 12.47 0.00 43.93 4.46
365 366 2.433491 CGCGGACGAAATGGGTCA 60.433 61.111 0.00 0.00 43.93 4.02
366 367 2.452813 CGCGGACGAAATGGGTCAG 61.453 63.158 0.00 0.00 43.93 3.51
367 368 2.750888 GCGGACGAAATGGGTCAGC 61.751 63.158 0.00 1.66 45.46 4.26
368 369 2.452813 CGGACGAAATGGGTCAGCG 61.453 63.158 0.00 0.00 36.12 5.18
369 370 2.750888 GGACGAAATGGGTCAGCGC 61.751 63.158 0.00 0.00 36.12 5.92
370 371 2.031919 ACGAAATGGGTCAGCGCA 59.968 55.556 11.47 0.00 41.83 6.09
375 376 2.676608 ATGGGTCAGCGCATTGGA 59.323 55.556 11.47 0.00 44.43 3.53
376 377 1.452651 ATGGGTCAGCGCATTGGAG 60.453 57.895 11.47 0.00 44.43 3.86
377 378 2.045926 GGGTCAGCGCATTGGAGT 60.046 61.111 11.47 0.00 0.00 3.85
378 379 1.675641 GGGTCAGCGCATTGGAGTT 60.676 57.895 11.47 0.00 0.00 3.01
379 380 1.503542 GGTCAGCGCATTGGAGTTG 59.496 57.895 11.47 0.00 0.00 3.16
380 381 1.154150 GTCAGCGCATTGGAGTTGC 60.154 57.895 11.47 0.00 36.74 4.17
381 382 1.302752 TCAGCGCATTGGAGTTGCT 60.303 52.632 11.47 0.00 37.96 3.91
382 383 1.136147 CAGCGCATTGGAGTTGCTC 59.864 57.895 11.47 0.00 37.96 4.26
383 384 1.002868 AGCGCATTGGAGTTGCTCT 60.003 52.632 11.47 0.00 37.96 4.09
384 385 0.250234 AGCGCATTGGAGTTGCTCTA 59.750 50.000 11.47 0.00 33.63 2.43
385 386 1.086696 GCGCATTGGAGTTGCTCTAA 58.913 50.000 0.30 0.00 37.96 2.10
386 387 1.063174 GCGCATTGGAGTTGCTCTAAG 59.937 52.381 0.30 0.00 34.66 2.18
387 388 1.667724 CGCATTGGAGTTGCTCTAAGG 59.332 52.381 3.21 3.21 34.66 2.69
388 389 2.716217 GCATTGGAGTTGCTCTAAGGT 58.284 47.619 8.25 0.00 35.70 3.50
389 390 3.678806 CGCATTGGAGTTGCTCTAAGGTA 60.679 47.826 8.25 0.00 35.70 3.08
390 391 4.455606 GCATTGGAGTTGCTCTAAGGTAT 58.544 43.478 8.25 0.00 35.70 2.73
391 392 4.884164 GCATTGGAGTTGCTCTAAGGTATT 59.116 41.667 8.25 0.00 35.70 1.89
392 393 5.008118 GCATTGGAGTTGCTCTAAGGTATTC 59.992 44.000 8.25 0.00 35.70 1.75
393 394 5.755409 TTGGAGTTGCTCTAAGGTATTCA 57.245 39.130 0.00 0.00 0.00 2.57
394 395 5.957771 TGGAGTTGCTCTAAGGTATTCAT 57.042 39.130 0.00 0.00 0.00 2.57
395 396 6.313519 TGGAGTTGCTCTAAGGTATTCATT 57.686 37.500 0.00 0.00 0.00 2.57
396 397 6.721318 TGGAGTTGCTCTAAGGTATTCATTT 58.279 36.000 0.00 0.00 0.00 2.32
397 398 7.175104 TGGAGTTGCTCTAAGGTATTCATTTT 58.825 34.615 0.00 0.00 0.00 1.82
398 399 7.336931 TGGAGTTGCTCTAAGGTATTCATTTTC 59.663 37.037 0.00 0.00 0.00 2.29
399 400 7.201741 GGAGTTGCTCTAAGGTATTCATTTTCC 60.202 40.741 0.00 0.00 0.00 3.13
400 401 7.406104 AGTTGCTCTAAGGTATTCATTTTCCT 58.594 34.615 0.00 0.00 0.00 3.36
401 402 7.890655 AGTTGCTCTAAGGTATTCATTTTCCTT 59.109 33.333 0.00 0.00 42.10 3.36
402 403 8.523658 GTTGCTCTAAGGTATTCATTTTCCTTT 58.476 33.333 0.00 0.00 40.26 3.11
403 404 8.650143 TGCTCTAAGGTATTCATTTTCCTTTT 57.350 30.769 0.00 0.00 40.26 2.27
404 405 9.747898 TGCTCTAAGGTATTCATTTTCCTTTTA 57.252 29.630 0.00 0.00 40.26 1.52
428 429 5.706916 CTGAATTCAGCAGCAACAATTACT 58.293 37.500 21.96 0.00 37.15 2.24
429 430 5.702865 TGAATTCAGCAGCAACAATTACTC 58.297 37.500 3.38 0.00 0.00 2.59
430 431 5.241285 TGAATTCAGCAGCAACAATTACTCA 59.759 36.000 3.38 0.00 0.00 3.41
431 432 5.710513 ATTCAGCAGCAACAATTACTCAA 57.289 34.783 0.00 0.00 0.00 3.02
432 433 5.710513 TTCAGCAGCAACAATTACTCAAT 57.289 34.783 0.00 0.00 0.00 2.57
433 434 5.710513 TCAGCAGCAACAATTACTCAATT 57.289 34.783 0.00 0.00 34.60 2.32
445 446 7.031226 CAATTACTCAATTGTATCCCCACAG 57.969 40.000 5.13 0.00 44.01 3.66
446 447 5.772393 TTACTCAATTGTATCCCCACAGT 57.228 39.130 5.13 0.81 0.00 3.55
447 448 6.877668 TTACTCAATTGTATCCCCACAGTA 57.122 37.500 5.13 0.00 0.00 2.74
448 449 5.975988 ACTCAATTGTATCCCCACAGTAT 57.024 39.130 5.13 0.00 0.00 2.12
449 450 5.930135 ACTCAATTGTATCCCCACAGTATC 58.070 41.667 5.13 0.00 0.00 2.24
450 451 5.163195 ACTCAATTGTATCCCCACAGTATCC 60.163 44.000 5.13 0.00 0.00 2.59
451 452 4.975147 TCAATTGTATCCCCACAGTATCCT 59.025 41.667 5.13 0.00 0.00 3.24
452 453 5.431731 TCAATTGTATCCCCACAGTATCCTT 59.568 40.000 5.13 0.00 0.00 3.36
453 454 6.617784 TCAATTGTATCCCCACAGTATCCTTA 59.382 38.462 5.13 0.00 0.00 2.69
454 455 7.294720 TCAATTGTATCCCCACAGTATCCTTAT 59.705 37.037 5.13 0.00 0.00 1.73
455 456 7.648177 ATTGTATCCCCACAGTATCCTTATT 57.352 36.000 0.00 0.00 0.00 1.40
456 457 7.460214 TTGTATCCCCACAGTATCCTTATTT 57.540 36.000 0.00 0.00 0.00 1.40
457 458 8.570038 TTGTATCCCCACAGTATCCTTATTTA 57.430 34.615 0.00 0.00 0.00 1.40
458 459 8.751215 TGTATCCCCACAGTATCCTTATTTAT 57.249 34.615 0.00 0.00 0.00 1.40
459 460 9.177927 TGTATCCCCACAGTATCCTTATTTATT 57.822 33.333 0.00 0.00 0.00 1.40
462 463 8.990163 TCCCCACAGTATCCTTATTTATTTTC 57.010 34.615 0.00 0.00 0.00 2.29
463 464 8.561769 TCCCCACAGTATCCTTATTTATTTTCA 58.438 33.333 0.00 0.00 0.00 2.69
464 465 9.367160 CCCCACAGTATCCTTATTTATTTTCAT 57.633 33.333 0.00 0.00 0.00 2.57
495 496 8.706322 AATAATTACTCAATTGTATCCCCCAC 57.294 34.615 5.13 0.00 35.88 4.61
496 497 5.725551 ATTACTCAATTGTATCCCCCACA 57.274 39.130 5.13 0.00 0.00 4.17
497 498 3.652057 ACTCAATTGTATCCCCCACAG 57.348 47.619 5.13 0.00 0.00 3.66
498 499 2.919602 ACTCAATTGTATCCCCCACAGT 59.080 45.455 5.13 0.00 0.00 3.55
499 500 4.108570 ACTCAATTGTATCCCCCACAGTA 58.891 43.478 5.13 0.00 0.00 2.74
500 501 4.726825 ACTCAATTGTATCCCCCACAGTAT 59.273 41.667 5.13 0.00 0.00 2.12
501 502 5.163195 ACTCAATTGTATCCCCCACAGTATC 60.163 44.000 5.13 0.00 0.00 2.24
502 503 4.104102 TCAATTGTATCCCCCACAGTATCC 59.896 45.833 5.13 0.00 0.00 2.59
503 504 3.431411 TTGTATCCCCCACAGTATCCT 57.569 47.619 0.00 0.00 0.00 3.24
504 505 3.431411 TGTATCCCCCACAGTATCCTT 57.569 47.619 0.00 0.00 0.00 3.36
505 506 4.562934 TGTATCCCCCACAGTATCCTTA 57.437 45.455 0.00 0.00 0.00 2.69
506 507 5.101254 TGTATCCCCCACAGTATCCTTAT 57.899 43.478 0.00 0.00 0.00 1.73
507 508 5.482580 TGTATCCCCCACAGTATCCTTATT 58.517 41.667 0.00 0.00 0.00 1.40
508 509 5.914716 TGTATCCCCCACAGTATCCTTATTT 59.085 40.000 0.00 0.00 0.00 1.40
509 510 7.083628 TGTATCCCCCACAGTATCCTTATTTA 58.916 38.462 0.00 0.00 0.00 1.40
510 511 7.742213 TGTATCCCCCACAGTATCCTTATTTAT 59.258 37.037 0.00 0.00 0.00 1.40
511 512 7.663501 ATCCCCCACAGTATCCTTATTTATT 57.336 36.000 0.00 0.00 0.00 1.40
512 513 7.474474 TCCCCCACAGTATCCTTATTTATTT 57.526 36.000 0.00 0.00 0.00 1.40
513 514 7.889178 TCCCCCACAGTATCCTTATTTATTTT 58.111 34.615 0.00 0.00 0.00 1.82
514 515 8.002459 TCCCCCACAGTATCCTTATTTATTTTC 58.998 37.037 0.00 0.00 0.00 2.29
515 516 7.782644 CCCCCACAGTATCCTTATTTATTTTCA 59.217 37.037 0.00 0.00 0.00 2.69
516 517 9.367160 CCCCACAGTATCCTTATTTATTTTCAT 57.633 33.333 0.00 0.00 0.00 2.57
547 548 8.706322 AATAATTACTCAATTGTATCCCCCAC 57.294 34.615 5.13 0.00 35.88 4.61
548 549 5.725551 ATTACTCAATTGTATCCCCCACA 57.274 39.130 5.13 0.00 0.00 4.17
549 550 3.652057 ACTCAATTGTATCCCCCACAG 57.348 47.619 5.13 0.00 0.00 3.66
550 551 2.919602 ACTCAATTGTATCCCCCACAGT 59.080 45.455 5.13 0.00 0.00 3.55
551 552 4.108570 ACTCAATTGTATCCCCCACAGTA 58.891 43.478 5.13 0.00 0.00 2.74
552 553 4.726825 ACTCAATTGTATCCCCCACAGTAT 59.273 41.667 5.13 0.00 0.00 2.12
553 554 5.163195 ACTCAATTGTATCCCCCACAGTATC 60.163 44.000 5.13 0.00 0.00 2.24
554 555 4.724293 TCAATTGTATCCCCCACAGTATCA 59.276 41.667 5.13 0.00 0.00 2.15
555 556 5.372363 TCAATTGTATCCCCCACAGTATCAT 59.628 40.000 5.13 0.00 0.00 2.45
556 557 5.930209 ATTGTATCCCCCACAGTATCATT 57.070 39.130 0.00 0.00 0.00 2.57
557 558 5.725551 TTGTATCCCCCACAGTATCATTT 57.274 39.130 0.00 0.00 0.00 2.32
558 559 5.725551 TGTATCCCCCACAGTATCATTTT 57.274 39.130 0.00 0.00 0.00 1.82
559 560 6.086011 TGTATCCCCCACAGTATCATTTTT 57.914 37.500 0.00 0.00 0.00 1.94
621 622 8.375493 ACTCCAGTTACTCAATTAATACTCCA 57.625 34.615 0.00 0.00 0.00 3.86
622 623 8.478877 ACTCCAGTTACTCAATTAATACTCCAG 58.521 37.037 0.00 0.00 0.00 3.86
623 624 8.375493 TCCAGTTACTCAATTAATACTCCAGT 57.625 34.615 0.00 0.00 0.00 4.00
624 625 9.483489 TCCAGTTACTCAATTAATACTCCAGTA 57.517 33.333 0.00 0.00 34.67 2.74
633 634 9.542462 TCAATTAATACTCCAGTATCCTTTTCG 57.458 33.333 0.00 0.00 40.10 3.46
634 635 9.326413 CAATTAATACTCCAGTATCCTTTTCGT 57.674 33.333 0.00 0.00 40.10 3.85
635 636 9.543783 AATTAATACTCCAGTATCCTTTTCGTC 57.456 33.333 0.00 0.00 40.10 4.20
636 637 3.505464 ACTCCAGTATCCTTTTCGTCG 57.495 47.619 0.00 0.00 0.00 5.12
637 638 2.194271 CTCCAGTATCCTTTTCGTCGC 58.806 52.381 0.00 0.00 0.00 5.19
638 639 1.822990 TCCAGTATCCTTTTCGTCGCT 59.177 47.619 0.00 0.00 0.00 4.93
639 640 1.927174 CCAGTATCCTTTTCGTCGCTG 59.073 52.381 0.00 0.00 0.00 5.18
640 641 1.927174 CAGTATCCTTTTCGTCGCTGG 59.073 52.381 0.00 0.00 0.00 4.85
641 642 1.822990 AGTATCCTTTTCGTCGCTGGA 59.177 47.619 0.00 0.00 0.00 3.86
642 643 1.925185 GTATCCTTTTCGTCGCTGGAC 59.075 52.381 0.00 0.00 39.89 4.02
653 654 2.183300 GCTGGACGCGGATACACA 59.817 61.111 12.47 0.00 0.00 3.72
654 655 1.447140 GCTGGACGCGGATACACAA 60.447 57.895 12.47 0.00 0.00 3.33
655 656 0.810031 GCTGGACGCGGATACACAAT 60.810 55.000 12.47 0.00 0.00 2.71
656 657 1.651987 CTGGACGCGGATACACAATT 58.348 50.000 12.47 0.00 0.00 2.32
657 658 1.593006 CTGGACGCGGATACACAATTC 59.407 52.381 12.47 0.00 0.00 2.17
658 659 1.066787 TGGACGCGGATACACAATTCA 60.067 47.619 12.47 0.00 0.00 2.57
659 660 2.210116 GGACGCGGATACACAATTCAT 58.790 47.619 12.47 0.00 0.00 2.57
660 661 3.181474 TGGACGCGGATACACAATTCATA 60.181 43.478 12.47 0.00 0.00 2.15
661 662 3.183775 GGACGCGGATACACAATTCATAC 59.816 47.826 12.47 0.00 0.00 2.39
662 663 4.049186 GACGCGGATACACAATTCATACT 58.951 43.478 12.47 0.00 0.00 2.12
663 664 4.439057 ACGCGGATACACAATTCATACTT 58.561 39.130 12.47 0.00 0.00 2.24
664 665 4.873827 ACGCGGATACACAATTCATACTTT 59.126 37.500 12.47 0.00 0.00 2.66
665 666 6.044046 ACGCGGATACACAATTCATACTTTA 58.956 36.000 12.47 0.00 0.00 1.85
666 667 6.535865 ACGCGGATACACAATTCATACTTTAA 59.464 34.615 12.47 0.00 0.00 1.52
667 668 7.064847 ACGCGGATACACAATTCATACTTTAAA 59.935 33.333 12.47 0.00 0.00 1.52
668 669 8.067784 CGCGGATACACAATTCATACTTTAAAT 58.932 33.333 0.00 0.00 0.00 1.40
669 670 9.730420 GCGGATACACAATTCATACTTTAAATT 57.270 29.630 0.00 0.00 0.00 1.82
710 711 3.771071 ACACTATACTACACCACCCCT 57.229 47.619 0.00 0.00 0.00 4.79
713 714 4.479796 ACACTATACTACACCACCCCTAGA 59.520 45.833 0.00 0.00 0.00 2.43
722 723 3.792684 ACACCACCCCTAGAGTATAGAGT 59.207 47.826 0.00 0.00 0.00 3.24
729 730 7.182387 CCACCCCTAGAGTATAGAGTGATACTA 59.818 44.444 13.42 0.00 41.68 1.82
756 757 8.974292 ATTAATACTCCTGTATCCCATGTAGT 57.026 34.615 0.00 0.00 38.33 2.73
761 762 9.702253 ATACTCCTGTATCCCATGTAGTATAAG 57.298 37.037 0.00 0.00 34.53 1.73
804 807 8.950208 AATACTCTAAGATTGGTTAGAAGCAC 57.050 34.615 0.00 0.00 38.33 4.40
835 841 3.056536 ACACTGTACTGCACTACTCATGG 60.057 47.826 0.00 0.00 0.00 3.66
839 845 1.257743 ACTGCACTACTCATGGACGT 58.742 50.000 0.00 0.00 0.00 4.34
862 868 8.404000 ACGTATAGCGGGATACTCAATTAATAG 58.596 37.037 0.00 0.00 46.52 1.73
867 873 6.493802 AGCGGGATACTCAATTAATAGTCTCA 59.506 38.462 6.26 0.00 0.00 3.27
898 904 2.025155 AGCAGGACGACGATACTCAAT 58.975 47.619 0.00 0.00 0.00 2.57
906 912 7.534578 CAGGACGACGATACTCAATTAATACTC 59.465 40.741 0.00 0.00 0.00 2.59
907 913 7.444792 AGGACGACGATACTCAATTAATACTCT 59.555 37.037 0.00 0.00 0.00 3.24
908 914 8.715998 GGACGACGATACTCAATTAATACTCTA 58.284 37.037 0.00 0.00 0.00 2.43
956 962 1.407979 GCACTATACTGCACTACCCGT 59.592 52.381 0.03 0.00 37.11 5.28
967 973 4.976864 TGCACTACCCGTAGACATATAGA 58.023 43.478 8.84 0.00 36.97 1.98
968 974 5.001874 TGCACTACCCGTAGACATATAGAG 58.998 45.833 8.84 0.00 36.97 2.43
969 975 4.395542 GCACTACCCGTAGACATATAGAGG 59.604 50.000 8.84 0.00 36.97 3.69
996 1002 4.500603 ACCTCGAGCTACCAATAATACG 57.499 45.455 6.99 0.00 0.00 3.06
1013 1019 2.044946 GCCCATGGCCTTCGACTT 60.045 61.111 6.09 0.00 44.06 3.01
1015 1021 1.815421 CCCATGGCCTTCGACTTCG 60.815 63.158 6.09 0.00 41.45 3.79
1030 1036 2.290122 CTTCGACCATGAGCGCCTCT 62.290 60.000 2.29 0.00 0.00 3.69
1032 1038 2.581354 GACCATGAGCGCCTCTGT 59.419 61.111 2.29 0.00 0.00 3.41
1062 1068 1.913403 GCATTCGATGAAACAAAGGCG 59.087 47.619 0.00 0.00 0.00 5.52
1080 1086 2.668550 GGCGTCAAAGGCCTCGTT 60.669 61.111 5.23 0.00 45.16 3.85
1083 1089 1.298859 GCGTCAAAGGCCTCGTTGAT 61.299 55.000 20.21 0.00 41.79 2.57
1105 1111 4.856801 GCATCACCGCCATCCCGT 62.857 66.667 0.00 0.00 0.00 5.28
1119 1125 0.620410 TCCCGTCCATCTTCCACCAT 60.620 55.000 0.00 0.00 0.00 3.55
1134 1140 0.252742 ACCATCCTCCCGAGTCCTTT 60.253 55.000 0.00 0.00 0.00 3.11
1176 1182 2.580276 GACGTTGCCATCCCGGTA 59.420 61.111 0.00 0.00 36.97 4.02
1193 1199 2.191513 TAATCGACCTCTCGGGCCG 61.192 63.158 22.51 22.51 40.58 6.13
1230 1236 1.440060 CACGGTGAAGGCGGCTATA 59.560 57.895 13.71 0.50 0.00 1.31
1237 1243 3.244249 GGTGAAGGCGGCTATAGAGAAAT 60.244 47.826 13.71 0.00 0.00 2.17
1249 1255 6.295249 GCTATAGAGAAATTGGGCTTCTTCT 58.705 40.000 3.21 0.00 33.24 2.85
1342 1348 3.393970 CTGCGGAGGCCAAGGAGA 61.394 66.667 5.01 0.00 38.85 3.71
1359 1365 1.263752 GAGATCTACTACACGCGGGAC 59.736 57.143 19.19 0.00 0.00 4.46
1383 1389 4.475345 AGGAGAGACAAGTCAAGTACAGT 58.525 43.478 2.72 0.00 0.00 3.55
1389 1395 3.815401 GACAAGTCAAGTACAGTGGCAAT 59.185 43.478 0.00 0.00 0.00 3.56
1401 1407 1.530419 TGGCAATGCGGACCTGTTT 60.530 52.632 0.00 0.00 0.00 2.83
1443 1449 2.677836 GCGTGACACCATGTACATCAAT 59.322 45.455 5.07 0.00 0.00 2.57
1509 1536 2.646719 GTCGTGCCGGAGTACACA 59.353 61.111 5.05 0.00 36.57 3.72
1608 1638 0.683504 ACGAGACGGGTTGCCTAGAT 60.684 55.000 0.00 0.00 0.00 1.98
1644 1674 2.345760 CCACTACTACCCGGCGTGT 61.346 63.158 6.01 2.22 0.00 4.49
1734 1764 3.887868 GGCGTTTATGGCGGCCTG 61.888 66.667 21.46 4.25 46.90 4.85
1746 1776 2.964978 GGCCTGCAATTGCTCGTT 59.035 55.556 29.37 0.00 42.66 3.85
1749 1779 0.171903 GCCTGCAATTGCTCGTTGAT 59.828 50.000 29.37 0.00 42.66 2.57
1752 1782 2.098607 CCTGCAATTGCTCGTTGATGAT 59.901 45.455 29.37 0.00 42.66 2.45
1753 1783 3.313249 CCTGCAATTGCTCGTTGATGATA 59.687 43.478 29.37 5.31 42.66 2.15
1754 1784 4.201940 CCTGCAATTGCTCGTTGATGATAA 60.202 41.667 29.37 5.11 42.66 1.75
1756 1786 4.155644 TGCAATTGCTCGTTGATGATAACA 59.844 37.500 29.37 1.93 42.66 2.41
1757 1787 5.094812 GCAATTGCTCGTTGATGATAACAA 58.905 37.500 23.21 0.00 38.21 2.83
1758 1788 5.228635 GCAATTGCTCGTTGATGATAACAAG 59.771 40.000 23.21 0.00 38.21 3.16
1759 1789 4.340894 TTGCTCGTTGATGATAACAAGC 57.659 40.909 0.00 0.00 40.20 4.01
1761 1791 3.750652 TGCTCGTTGATGATAACAAGCAA 59.249 39.130 2.14 0.00 44.83 3.91
1762 1792 4.091424 GCTCGTTGATGATAACAAGCAAC 58.909 43.478 10.24 10.24 39.70 4.17
1764 1794 5.281693 TCGTTGATGATAACAAGCAACAG 57.718 39.130 16.59 11.60 41.22 3.16
1765 1795 4.994217 TCGTTGATGATAACAAGCAACAGA 59.006 37.500 16.59 12.95 41.22 3.41
1766 1796 5.468409 TCGTTGATGATAACAAGCAACAGAA 59.532 36.000 16.59 4.86 41.22 3.02
1769 1814 5.316167 TGATGATAACAAGCAACAGAAGGT 58.684 37.500 0.00 0.00 0.00 3.50
1777 1822 0.465460 GCAACAGAAGGTGTGGGTGA 60.465 55.000 0.00 0.00 40.26 4.02
1779 1824 1.949525 CAACAGAAGGTGTGGGTGAAG 59.050 52.381 0.00 0.00 40.26 3.02
1842 1890 1.303888 CCTGCAGCTGGTGTCCAAT 60.304 57.895 17.12 0.00 30.80 3.16
1858 1906 2.807967 TCCAATGACAAGTTCAAGAGCG 59.192 45.455 0.00 0.00 37.92 5.03
1859 1907 2.549754 CCAATGACAAGTTCAAGAGCGT 59.450 45.455 0.00 0.00 37.92 5.07
1860 1908 3.003689 CCAATGACAAGTTCAAGAGCGTT 59.996 43.478 0.00 0.00 37.92 4.84
1880 1928 1.147153 TGCATCGTGTGGTGTCCAA 59.853 52.632 0.00 0.00 34.18 3.53
1881 1929 1.163420 TGCATCGTGTGGTGTCCAAC 61.163 55.000 0.00 0.00 34.18 3.77
1884 1932 0.468226 ATCGTGTGGTGTCCAACAGT 59.532 50.000 0.00 0.00 34.18 3.55
1890 1938 1.275421 TGGTGTCCAACAGTGTGGGA 61.275 55.000 15.98 15.98 39.34 4.37
1943 1991 2.158645 CGAATATGGCAACGTTGTGTGA 59.841 45.455 27.78 12.87 42.51 3.58
1981 2029 4.747529 GCGGTCCACCACGGTACC 62.748 72.222 0.16 0.16 35.57 3.34
2046 2095 0.465705 TCAAGTCGGCCTCATCATCC 59.534 55.000 0.00 0.00 0.00 3.51
2055 2104 1.684248 GCCTCATCATCCCAAACTGCT 60.684 52.381 0.00 0.00 0.00 4.24
2061 2110 1.833630 TCATCCCAAACTGCTCTCGAT 59.166 47.619 0.00 0.00 0.00 3.59
2063 2112 3.450817 TCATCCCAAACTGCTCTCGATTA 59.549 43.478 0.00 0.00 0.00 1.75
2196 3742 8.362464 ACTATGTATGTCTTCTTTGTCAGGTA 57.638 34.615 0.00 0.00 0.00 3.08
2219 3765 8.370182 GGTAATAATTTCATCCAATCAGCCATT 58.630 33.333 0.00 0.00 0.00 3.16
2220 3766 9.415544 GTAATAATTTCATCCAATCAGCCATTC 57.584 33.333 0.00 0.00 0.00 2.67
2242 3792 9.177608 CATTCCTCCATTGTTCAGTCTTAAATA 57.822 33.333 0.00 0.00 0.00 1.40
2297 3848 2.195096 CCGCCAATGCAACAATGTATG 58.805 47.619 0.00 0.00 37.32 2.39
2303 3854 5.459762 GCCAATGCAACAATGTATGTACATC 59.540 40.000 12.68 5.06 42.99 3.06
2315 3866 5.578776 TGTATGTACATCTGCGTGTAGAAG 58.421 41.667 12.68 0.00 35.40 2.85
2431 4023 9.206690 TCCCATAATATAAGACCATTTTGCAAA 57.793 29.630 8.05 8.05 0.00 3.68
2442 4034 7.102993 AGACCATTTTGCAAACTAAAACAACT 58.897 30.769 12.39 0.59 30.64 3.16
2445 4037 7.174080 ACCATTTTGCAAACTAAAACAACTTGT 59.826 29.630 12.39 0.00 30.64 3.16
2450 4042 9.865484 TTTGCAAACTAAAACAACTTGTAAAAC 57.135 25.926 8.05 0.00 31.55 2.43
2486 4078 7.863722 TCTGAGATGGAGTAGTAGAAAGTAGT 58.136 38.462 0.00 0.00 0.00 2.73
2545 4155 0.247460 CACATGTCGCCTTCTCCTGA 59.753 55.000 0.00 0.00 0.00 3.86
2628 4238 3.065510 CCTCTGAAATGCTGATGCTTGAG 59.934 47.826 0.00 0.00 40.48 3.02
2654 4264 3.621268 TGCGTGATGAACTACTATTTGGC 59.379 43.478 0.00 0.00 0.00 4.52
2687 4341 2.112898 ACGTCAAGTGACCTCGTGT 58.887 52.632 5.88 0.00 41.86 4.49
2688 4342 0.458669 ACGTCAAGTGACCTCGTGTT 59.541 50.000 5.88 0.00 41.86 3.32
2689 4343 0.852777 CGTCAAGTGACCTCGTGTTG 59.147 55.000 5.88 0.00 41.86 3.33
2690 4344 1.801395 CGTCAAGTGACCTCGTGTTGT 60.801 52.381 5.88 0.00 41.86 3.32
2691 4345 1.593006 GTCAAGTGACCTCGTGTTGTG 59.407 52.381 0.00 0.00 39.07 3.33
2692 4346 0.304705 CAAGTGACCTCGTGTTGTGC 59.695 55.000 0.00 0.00 0.00 4.57
2693 4347 0.107897 AAGTGACCTCGTGTTGTGCA 60.108 50.000 0.00 0.00 0.00 4.57
2694 4348 0.107897 AGTGACCTCGTGTTGTGCAA 60.108 50.000 0.00 0.00 0.00 4.08
2695 4349 0.730265 GTGACCTCGTGTTGTGCAAA 59.270 50.000 0.00 0.00 0.00 3.68
2696 4350 1.013596 TGACCTCGTGTTGTGCAAAG 58.986 50.000 0.00 0.00 0.00 2.77
2697 4351 0.317020 GACCTCGTGTTGTGCAAAGC 60.317 55.000 0.00 0.00 0.00 3.51
2698 4352 1.008538 CCTCGTGTTGTGCAAAGCC 60.009 57.895 0.00 0.00 0.00 4.35
2699 4353 1.447317 CCTCGTGTTGTGCAAAGCCT 61.447 55.000 0.00 0.00 0.00 4.58
2700 4354 0.317269 CTCGTGTTGTGCAAAGCCTG 60.317 55.000 0.00 0.00 0.00 4.85
2701 4355 1.299316 CGTGTTGTGCAAAGCCTGG 60.299 57.895 0.00 0.00 0.00 4.45
2702 4356 1.723608 CGTGTTGTGCAAAGCCTGGA 61.724 55.000 0.00 0.00 0.00 3.86
2703 4357 0.675633 GTGTTGTGCAAAGCCTGGAT 59.324 50.000 0.00 0.00 0.00 3.41
2704 4358 0.675083 TGTTGTGCAAAGCCTGGATG 59.325 50.000 0.00 0.00 0.00 3.51
2705 4359 0.961019 GTTGTGCAAAGCCTGGATGA 59.039 50.000 0.00 0.00 0.00 2.92
2706 4360 1.068055 GTTGTGCAAAGCCTGGATGAG 60.068 52.381 0.00 0.00 0.00 2.90
2707 4361 1.246056 TGTGCAAAGCCTGGATGAGC 61.246 55.000 0.00 0.00 0.00 4.26
2708 4362 0.964358 GTGCAAAGCCTGGATGAGCT 60.964 55.000 9.74 0.00 42.40 4.09
2709 4363 0.620030 TGCAAAGCCTGGATGAGCTA 59.380 50.000 9.74 0.00 38.74 3.32
2710 4364 1.307097 GCAAAGCCTGGATGAGCTAG 58.693 55.000 0.00 0.00 38.74 3.42
2711 4365 1.134280 GCAAAGCCTGGATGAGCTAGA 60.134 52.381 0.00 0.00 38.74 2.43
2712 4366 2.836262 CAAAGCCTGGATGAGCTAGAG 58.164 52.381 0.00 0.00 38.74 2.43
2713 4367 2.170187 CAAAGCCTGGATGAGCTAGAGT 59.830 50.000 0.00 0.00 38.74 3.24
2714 4368 2.173126 AGCCTGGATGAGCTAGAGTT 57.827 50.000 0.00 0.00 37.64 3.01
2715 4369 2.038659 AGCCTGGATGAGCTAGAGTTC 58.961 52.381 0.00 0.00 37.64 3.01
2716 4370 2.038659 GCCTGGATGAGCTAGAGTTCT 58.961 52.381 0.00 0.00 0.00 3.01
2717 4371 2.224018 GCCTGGATGAGCTAGAGTTCTG 60.224 54.545 0.00 0.00 0.00 3.02
2718 4372 3.295093 CCTGGATGAGCTAGAGTTCTGA 58.705 50.000 0.00 0.00 0.00 3.27
2730 4384 9.323985 GAGCTAGAGTTCTGAACAAATCATTAT 57.676 33.333 21.50 0.00 37.44 1.28
2760 4414 7.728148 TCTGGACTTGTATTGTTGTACAGTTA 58.272 34.615 0.00 0.00 40.96 2.24
2763 4417 7.094975 TGGACTTGTATTGTTGTACAGTTATGC 60.095 37.037 0.00 0.00 36.08 3.14
2866 4520 2.738846 CTGTGTCATGCTTTAGCTCGTT 59.261 45.455 3.10 0.00 42.66 3.85
2909 4565 9.530129 CGTTCAAGTTAGTTAATGTGATCTTTC 57.470 33.333 0.00 0.00 0.00 2.62
2913 4569 6.708285 AGTTAGTTAATGTGATCTTTCCCGT 58.292 36.000 0.00 0.00 0.00 5.28
2918 4574 7.335627 AGTTAATGTGATCTTTCCCGTAATCA 58.664 34.615 0.00 0.00 0.00 2.57
2923 4579 5.129650 TGTGATCTTTCCCGTAATCATACCA 59.870 40.000 0.00 0.00 31.35 3.25
2945 4603 6.156519 CCAAAATAGTGGTTTTAACAGAGCC 58.843 40.000 0.00 0.00 33.63 4.70
2966 4624 3.249799 CCGAGCCATAATTTCGTTGCATA 59.750 43.478 0.00 0.00 32.73 3.14
2967 4625 4.083324 CCGAGCCATAATTTCGTTGCATAT 60.083 41.667 0.00 0.00 32.73 1.78
2986 4644 6.658816 TGCATATGCCCTATTAACCAATGTAG 59.341 38.462 24.54 0.00 41.18 2.74
2989 4647 5.304686 TGCCCTATTAACCAATGTAGGAG 57.695 43.478 0.00 0.00 36.62 3.69
3052 4710 5.523438 AACCAAATTAACCGAACACACAT 57.477 34.783 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.522668 CGAAAACATCCAGTGAGCCA 58.477 50.000 0.00 0.00 0.00 4.75
6 7 0.804989 CCGAAAACATCCAGTGAGCC 59.195 55.000 0.00 0.00 0.00 4.70
7 8 0.804989 CCCGAAAACATCCAGTGAGC 59.195 55.000 0.00 0.00 0.00 4.26
8 9 1.271379 ACCCCGAAAACATCCAGTGAG 60.271 52.381 0.00 0.00 0.00 3.51
9 10 0.768622 ACCCCGAAAACATCCAGTGA 59.231 50.000 0.00 0.00 0.00 3.41
10 11 2.081462 GTACCCCGAAAACATCCAGTG 58.919 52.381 0.00 0.00 0.00 3.66
11 12 1.338389 CGTACCCCGAAAACATCCAGT 60.338 52.381 0.00 0.00 39.56 4.00
12 13 1.338389 ACGTACCCCGAAAACATCCAG 60.338 52.381 0.00 0.00 40.70 3.86
14 15 2.543641 CTACGTACCCCGAAAACATCC 58.456 52.381 0.00 0.00 40.70 3.51
15 16 2.543641 CCTACGTACCCCGAAAACATC 58.456 52.381 0.00 0.00 40.70 3.06
16 17 1.405933 GCCTACGTACCCCGAAAACAT 60.406 52.381 0.00 0.00 40.70 2.71
17 18 0.037419 GCCTACGTACCCCGAAAACA 60.037 55.000 0.00 0.00 40.70 2.83
18 19 0.247460 AGCCTACGTACCCCGAAAAC 59.753 55.000 0.00 0.00 40.70 2.43
20 21 1.846007 TAAGCCTACGTACCCCGAAA 58.154 50.000 0.00 0.00 40.70 3.46
22 23 2.949177 TATAAGCCTACGTACCCCGA 57.051 50.000 0.00 0.00 40.70 5.14
23 24 3.629398 CCTATATAAGCCTACGTACCCCG 59.371 52.174 0.00 0.00 44.03 5.73
24 25 4.860022 TCCTATATAAGCCTACGTACCCC 58.140 47.826 0.00 0.00 0.00 4.95
25 26 4.886489 CCTCCTATATAAGCCTACGTACCC 59.114 50.000 0.00 0.00 0.00 3.69
26 27 5.749462 TCCTCCTATATAAGCCTACGTACC 58.251 45.833 0.00 0.00 0.00 3.34
27 28 7.108847 TCTTCCTCCTATATAAGCCTACGTAC 58.891 42.308 0.00 0.00 0.00 3.67
28 29 7.262990 TCTTCCTCCTATATAAGCCTACGTA 57.737 40.000 0.00 0.00 0.00 3.57
29 30 6.137104 TCTTCCTCCTATATAAGCCTACGT 57.863 41.667 0.00 0.00 0.00 3.57
30 31 6.660094 ACTTCTTCCTCCTATATAAGCCTACG 59.340 42.308 0.00 0.00 0.00 3.51
31 32 8.959548 GTACTTCTTCCTCCTATATAAGCCTAC 58.040 40.741 0.00 0.00 0.00 3.18
33 34 6.660094 CGTACTTCTTCCTCCTATATAAGCCT 59.340 42.308 0.00 0.00 0.00 4.58
34 35 6.433716 ACGTACTTCTTCCTCCTATATAAGCC 59.566 42.308 0.00 0.00 0.00 4.35
35 36 7.451501 ACGTACTTCTTCCTCCTATATAAGC 57.548 40.000 0.00 0.00 0.00 3.09
38 39 6.169094 CCGACGTACTTCTTCCTCCTATATA 58.831 44.000 0.00 0.00 0.00 0.86
39 40 5.002516 CCGACGTACTTCTTCCTCCTATAT 58.997 45.833 0.00 0.00 0.00 0.86
40 41 4.141620 ACCGACGTACTTCTTCCTCCTATA 60.142 45.833 0.00 0.00 0.00 1.31
41 42 3.212685 CCGACGTACTTCTTCCTCCTAT 58.787 50.000 0.00 0.00 0.00 2.57
44 45 1.135460 CACCGACGTACTTCTTCCTCC 60.135 57.143 0.00 0.00 0.00 4.30
45 46 1.135460 CCACCGACGTACTTCTTCCTC 60.135 57.143 0.00 0.00 0.00 3.71
46 47 0.886563 CCACCGACGTACTTCTTCCT 59.113 55.000 0.00 0.00 0.00 3.36
47 48 0.735287 GCCACCGACGTACTTCTTCC 60.735 60.000 0.00 0.00 0.00 3.46
48 49 0.735287 GGCCACCGACGTACTTCTTC 60.735 60.000 0.00 0.00 0.00 2.87
49 50 1.291272 GGCCACCGACGTACTTCTT 59.709 57.895 0.00 0.00 0.00 2.52
50 51 2.968206 GGCCACCGACGTACTTCT 59.032 61.111 0.00 0.00 0.00 2.85
70 71 2.044806 CTATCTTGTGGGCCCCTCGG 62.045 65.000 22.27 7.50 0.00 4.63
71 72 1.447643 CTATCTTGTGGGCCCCTCG 59.552 63.158 22.27 5.10 0.00 4.63
72 73 1.709994 CCCTATCTTGTGGGCCCCTC 61.710 65.000 22.27 13.54 36.61 4.30
75 76 2.768022 CCCCCTATCTTGTGGGCCC 61.768 68.421 17.59 17.59 42.03 5.80
76 77 2.927056 CCCCCTATCTTGTGGGCC 59.073 66.667 0.00 0.00 42.03 5.80
80 81 2.588877 CGCGCCCCCTATCTTGTG 60.589 66.667 0.00 0.00 0.00 3.33
81 82 4.547367 GCGCGCCCCCTATCTTGT 62.547 66.667 23.24 0.00 0.00 3.16
108 109 3.501458 GATAGGAGGGCGCGTCCAC 62.501 68.421 34.17 26.87 40.46 4.02
109 110 3.224324 GATAGGAGGGCGCGTCCA 61.224 66.667 34.17 12.07 40.46 4.02
110 111 2.913060 AGATAGGAGGGCGCGTCC 60.913 66.667 25.39 25.39 38.54 4.79
111 112 2.646143 GAGATAGGAGGGCGCGTC 59.354 66.667 8.43 4.38 0.00 5.19
114 115 2.336809 CACGAGATAGGAGGGCGC 59.663 66.667 0.00 0.00 0.00 6.53
116 117 2.737830 GCCACGAGATAGGAGGGC 59.262 66.667 0.00 0.00 0.00 5.19
117 118 2.565645 CGGCCACGAGATAGGAGGG 61.566 68.421 2.24 0.00 44.60 4.30
118 119 3.043419 CGGCCACGAGATAGGAGG 58.957 66.667 2.24 0.00 44.60 4.30
119 120 2.336809 GCGGCCACGAGATAGGAG 59.663 66.667 2.24 0.00 44.60 3.69
121 122 3.214250 GAGGCGGCCACGAGATAGG 62.214 68.421 23.09 0.00 44.60 2.57
122 123 2.336809 GAGGCGGCCACGAGATAG 59.663 66.667 23.09 0.00 44.60 2.08
123 124 3.592814 CGAGGCGGCCACGAGATA 61.593 66.667 30.83 0.00 44.60 1.98
135 136 2.046892 TCAAGAAGCAGCCGAGGC 60.047 61.111 5.89 5.89 42.33 4.70
136 137 0.321122 AACTCAAGAAGCAGCCGAGG 60.321 55.000 0.00 0.00 0.00 4.63
137 138 0.795085 CAACTCAAGAAGCAGCCGAG 59.205 55.000 0.00 0.00 0.00 4.63
138 139 1.230635 GCAACTCAAGAAGCAGCCGA 61.231 55.000 0.00 0.00 0.00 5.54
139 140 1.208614 GCAACTCAAGAAGCAGCCG 59.791 57.895 0.00 0.00 0.00 5.52
140 141 0.039708 GTGCAACTCAAGAAGCAGCC 60.040 55.000 0.00 0.00 37.72 4.85
141 142 3.468780 GTGCAACTCAAGAAGCAGC 57.531 52.632 0.00 0.00 37.72 5.25
153 154 1.517242 CAGAGGACTTGGAGTGCAAC 58.483 55.000 0.00 0.00 39.19 4.17
154 155 0.397941 CCAGAGGACTTGGAGTGCAA 59.602 55.000 0.00 0.00 39.19 4.08
156 157 0.908198 ATCCAGAGGACTTGGAGTGC 59.092 55.000 0.19 0.00 36.76 4.40
158 159 2.183679 GTGATCCAGAGGACTTGGAGT 58.816 52.381 0.19 0.00 32.98 3.85
159 160 1.135915 CGTGATCCAGAGGACTTGGAG 59.864 57.143 0.19 0.00 32.98 3.86
160 161 1.186200 CGTGATCCAGAGGACTTGGA 58.814 55.000 0.00 0.00 32.98 3.53
161 162 0.898320 ACGTGATCCAGAGGACTTGG 59.102 55.000 0.00 0.00 32.98 3.61
164 165 0.811915 CGAACGTGATCCAGAGGACT 59.188 55.000 0.00 0.00 32.98 3.85
165 166 0.526662 ACGAACGTGATCCAGAGGAC 59.473 55.000 0.00 0.00 32.98 3.85
166 167 1.201647 GAACGAACGTGATCCAGAGGA 59.798 52.381 0.00 0.00 35.55 3.71
167 168 1.630148 GAACGAACGTGATCCAGAGG 58.370 55.000 0.00 0.00 0.00 3.69
168 169 1.067846 TGGAACGAACGTGATCCAGAG 60.068 52.381 14.19 0.00 37.05 3.35
169 170 0.963225 TGGAACGAACGTGATCCAGA 59.037 50.000 14.19 0.00 37.05 3.86
170 171 1.790755 TTGGAACGAACGTGATCCAG 58.209 50.000 16.50 0.00 42.55 3.86
171 172 2.242047 TTTGGAACGAACGTGATCCA 57.758 45.000 14.19 14.19 40.10 3.41
172 173 3.612472 TTTTTGGAACGAACGTGATCC 57.388 42.857 10.07 10.07 0.00 3.36
173 174 4.611366 GTGATTTTTGGAACGAACGTGATC 59.389 41.667 0.00 0.00 0.00 2.92
174 175 4.533222 GTGATTTTTGGAACGAACGTGAT 58.467 39.130 0.00 0.00 0.00 3.06
175 176 3.544440 CGTGATTTTTGGAACGAACGTGA 60.544 43.478 0.00 0.00 38.27 4.35
176 177 2.711964 CGTGATTTTTGGAACGAACGTG 59.288 45.455 0.00 0.00 38.27 4.49
178 179 1.706597 GCGTGATTTTTGGAACGAACG 59.293 47.619 0.00 0.00 38.27 3.95
179 180 2.971261 GAGCGTGATTTTTGGAACGAAC 59.029 45.455 0.00 0.00 38.27 3.95
180 181 2.031508 GGAGCGTGATTTTTGGAACGAA 60.032 45.455 0.00 0.00 38.27 3.85
181 182 1.533731 GGAGCGTGATTTTTGGAACGA 59.466 47.619 0.00 0.00 38.27 3.85
182 183 1.401018 GGGAGCGTGATTTTTGGAACG 60.401 52.381 0.00 0.00 39.00 3.95
183 184 1.611491 TGGGAGCGTGATTTTTGGAAC 59.389 47.619 0.00 0.00 0.00 3.62
185 186 1.988293 TTGGGAGCGTGATTTTTGGA 58.012 45.000 0.00 0.00 0.00 3.53
186 187 2.610232 CCTTTGGGAGCGTGATTTTTGG 60.610 50.000 0.00 0.00 33.58 3.28
187 188 2.035832 ACCTTTGGGAGCGTGATTTTTG 59.964 45.455 0.00 0.00 36.25 2.44
188 189 2.316108 ACCTTTGGGAGCGTGATTTTT 58.684 42.857 0.00 0.00 36.25 1.94
189 190 1.995376 ACCTTTGGGAGCGTGATTTT 58.005 45.000 0.00 0.00 36.25 1.82
190 191 1.995376 AACCTTTGGGAGCGTGATTT 58.005 45.000 0.00 0.00 36.25 2.17
192 193 1.202879 TGAAACCTTTGGGAGCGTGAT 60.203 47.619 0.00 0.00 36.25 3.06
193 194 0.181587 TGAAACCTTTGGGAGCGTGA 59.818 50.000 0.00 0.00 36.25 4.35
195 196 1.886542 GAATGAAACCTTTGGGAGCGT 59.113 47.619 0.00 0.00 36.25 5.07
196 197 1.202348 GGAATGAAACCTTTGGGAGCG 59.798 52.381 0.00 0.00 36.25 5.03
197 198 1.202348 CGGAATGAAACCTTTGGGAGC 59.798 52.381 0.00 0.00 36.25 4.70
198 199 2.514803 ACGGAATGAAACCTTTGGGAG 58.485 47.619 0.00 0.00 36.25 4.30
200 201 3.389221 CAAACGGAATGAAACCTTTGGG 58.611 45.455 0.00 0.00 38.88 4.12
201 202 3.068873 TCCAAACGGAATGAAACCTTTGG 59.931 43.478 2.76 2.76 41.41 3.28
202 203 4.048504 GTCCAAACGGAATGAAACCTTTG 58.951 43.478 0.00 0.00 33.16 2.77
203 204 3.958147 AGTCCAAACGGAATGAAACCTTT 59.042 39.130 0.00 0.00 33.16 3.11
204 205 3.562182 AGTCCAAACGGAATGAAACCTT 58.438 40.909 0.00 0.00 33.16 3.50
205 206 3.146847 GAGTCCAAACGGAATGAAACCT 58.853 45.455 0.00 0.00 33.16 3.50
206 207 3.058224 CAGAGTCCAAACGGAATGAAACC 60.058 47.826 0.00 0.00 33.16 3.27
207 208 3.564225 ACAGAGTCCAAACGGAATGAAAC 59.436 43.478 0.00 0.00 33.16 2.78
208 209 3.815809 ACAGAGTCCAAACGGAATGAAA 58.184 40.909 0.00 0.00 33.16 2.69
209 210 3.485463 ACAGAGTCCAAACGGAATGAA 57.515 42.857 0.00 0.00 33.16 2.57
210 211 3.485463 AACAGAGTCCAAACGGAATGA 57.515 42.857 0.00 0.00 33.16 2.57
211 212 3.563808 TCAAACAGAGTCCAAACGGAATG 59.436 43.478 0.00 0.00 33.16 2.67
213 214 3.269538 TCAAACAGAGTCCAAACGGAA 57.730 42.857 0.00 0.00 33.16 4.30
214 215 2.992124 TCAAACAGAGTCCAAACGGA 57.008 45.000 0.00 0.00 0.00 4.69
215 216 5.163754 GGAATATCAAACAGAGTCCAAACGG 60.164 44.000 0.00 0.00 0.00 4.44
217 218 7.454260 AAGGAATATCAAACAGAGTCCAAAC 57.546 36.000 0.00 0.00 31.32 2.93
221 222 7.929941 AGAAAAGGAATATCAAACAGAGTCC 57.070 36.000 0.00 0.00 0.00 3.85
222 223 8.171840 CGAAGAAAAGGAATATCAAACAGAGTC 58.828 37.037 0.00 0.00 0.00 3.36
223 224 7.878127 TCGAAGAAAAGGAATATCAAACAGAGT 59.122 33.333 0.00 0.00 0.00 3.24
224 225 8.256611 TCGAAGAAAAGGAATATCAAACAGAG 57.743 34.615 0.00 0.00 0.00 3.35
225 226 8.615878 TTCGAAGAAAAGGAATATCAAACAGA 57.384 30.769 0.00 0.00 45.90 3.41
226 227 9.846248 ATTTCGAAGAAAAGGAATATCAAACAG 57.154 29.630 0.00 0.00 45.90 3.16
238 239 9.717892 GCCTATTTTAGTATTTCGAAGAAAAGG 57.282 33.333 0.00 2.52 45.90 3.11
269 270 3.256383 GCCCAACCCGTATTACTGTTTTT 59.744 43.478 0.00 0.00 0.00 1.94
271 272 2.439409 GCCCAACCCGTATTACTGTTT 58.561 47.619 0.00 0.00 0.00 2.83
273 274 0.253894 GGCCCAACCCGTATTACTGT 59.746 55.000 0.00 0.00 0.00 3.55
274 275 0.544697 AGGCCCAACCCGTATTACTG 59.455 55.000 0.00 0.00 40.58 2.74
277 278 1.688269 CGGAGGCCCAACCCGTATTA 61.688 60.000 13.38 0.00 40.58 0.98
278 279 3.004090 GGAGGCCCAACCCGTATT 58.996 61.111 0.00 0.00 40.58 1.89
279 280 3.476419 CGGAGGCCCAACCCGTAT 61.476 66.667 13.38 0.00 40.58 3.06
296 297 3.723348 GACCAAACGCGCTGACCC 61.723 66.667 5.73 0.00 0.00 4.46
297 298 4.072088 CGACCAAACGCGCTGACC 62.072 66.667 5.73 0.00 0.00 4.02
298 299 4.072088 CCGACCAAACGCGCTGAC 62.072 66.667 5.73 1.19 0.00 3.51
299 300 4.595538 ACCGACCAAACGCGCTGA 62.596 61.111 5.73 0.00 0.00 4.26
300 301 2.655952 AAAACCGACCAAACGCGCTG 62.656 55.000 5.73 3.42 0.00 5.18
301 302 1.995646 AAAAACCGACCAAACGCGCT 61.996 50.000 5.73 0.00 0.00 5.92
302 303 1.533988 GAAAAACCGACCAAACGCGC 61.534 55.000 5.73 0.00 0.00 6.86
303 304 0.028374 AGAAAAACCGACCAAACGCG 59.972 50.000 3.53 3.53 0.00 6.01
304 305 1.202211 ACAGAAAAACCGACCAAACGC 60.202 47.619 0.00 0.00 0.00 4.84
305 306 2.540157 GGACAGAAAAACCGACCAAACG 60.540 50.000 0.00 0.00 0.00 3.60
306 307 3.074504 GGACAGAAAAACCGACCAAAC 57.925 47.619 0.00 0.00 0.00 2.93
314 315 1.136057 GTCATCGCGGACAGAAAAACC 60.136 52.381 6.13 0.00 37.73 3.27
315 316 1.136057 GGTCATCGCGGACAGAAAAAC 60.136 52.381 15.77 0.00 39.59 2.43
316 317 1.153353 GGTCATCGCGGACAGAAAAA 58.847 50.000 15.77 0.00 39.59 1.94
317 318 0.672401 GGGTCATCGCGGACAGAAAA 60.672 55.000 15.77 0.00 39.59 2.29
318 319 1.079405 GGGTCATCGCGGACAGAAA 60.079 57.895 15.77 0.00 39.59 2.52
319 320 1.822114 TTGGGTCATCGCGGACAGAA 61.822 55.000 15.77 6.20 39.59 3.02
320 321 1.822114 TTTGGGTCATCGCGGACAGA 61.822 55.000 15.77 2.71 39.59 3.41
321 322 1.375396 TTTGGGTCATCGCGGACAG 60.375 57.895 15.77 0.39 39.59 3.51
322 323 1.669760 GTTTGGGTCATCGCGGACA 60.670 57.895 15.77 0.00 39.59 4.02
323 324 2.736682 CGTTTGGGTCATCGCGGAC 61.737 63.158 6.13 6.62 37.06 4.79
324 325 2.433491 CGTTTGGGTCATCGCGGA 60.433 61.111 6.13 0.00 0.00 5.54
325 326 3.496131 CCGTTTGGGTCATCGCGG 61.496 66.667 6.13 0.00 0.00 6.46
326 327 2.433491 TCCGTTTGGGTCATCGCG 60.433 61.111 0.00 0.00 37.00 5.87
327 328 2.736682 CGTCCGTTTGGGTCATCGC 61.737 63.158 0.00 0.00 37.00 4.58
328 329 2.736682 GCGTCCGTTTGGGTCATCG 61.737 63.158 0.00 0.00 37.00 3.84
329 330 1.669760 TGCGTCCGTTTGGGTCATC 60.670 57.895 0.00 0.00 37.00 2.92
330 331 1.964373 GTGCGTCCGTTTGGGTCAT 60.964 57.895 0.00 0.00 37.00 3.06
331 332 2.589442 GTGCGTCCGTTTGGGTCA 60.589 61.111 0.00 0.00 37.00 4.02
332 333 3.708734 CGTGCGTCCGTTTGGGTC 61.709 66.667 0.00 0.00 37.00 4.46
342 343 3.475774 ATTTCGTCCGCGTGCGTC 61.476 61.111 13.70 5.18 39.49 5.19
343 344 3.773630 CATTTCGTCCGCGTGCGT 61.774 61.111 13.70 0.00 39.49 5.24
344 345 4.499023 CCATTTCGTCCGCGTGCG 62.499 66.667 4.92 7.38 39.49 5.34
345 346 4.160635 CCCATTTCGTCCGCGTGC 62.161 66.667 4.92 0.00 39.49 5.34
346 347 2.736682 GACCCATTTCGTCCGCGTG 61.737 63.158 4.92 0.00 39.49 5.34
347 348 2.433664 GACCCATTTCGTCCGCGT 60.434 61.111 4.92 0.00 39.49 6.01
348 349 2.433491 TGACCCATTTCGTCCGCG 60.433 61.111 0.00 0.00 39.92 6.46
349 350 2.750888 GCTGACCCATTTCGTCCGC 61.751 63.158 0.00 0.00 34.12 5.54
350 351 2.452813 CGCTGACCCATTTCGTCCG 61.453 63.158 0.00 0.00 0.00 4.79
351 352 2.750888 GCGCTGACCCATTTCGTCC 61.751 63.158 0.00 0.00 0.00 4.79
352 353 1.369091 ATGCGCTGACCCATTTCGTC 61.369 55.000 9.73 0.00 0.00 4.20
353 354 0.960364 AATGCGCTGACCCATTTCGT 60.960 50.000 9.73 0.00 0.00 3.85
354 355 0.523968 CAATGCGCTGACCCATTTCG 60.524 55.000 9.73 0.00 29.71 3.46
355 356 0.179129 CCAATGCGCTGACCCATTTC 60.179 55.000 9.73 0.00 29.71 2.17
356 357 0.611618 TCCAATGCGCTGACCCATTT 60.612 50.000 9.73 0.00 29.71 2.32
357 358 1.001020 TCCAATGCGCTGACCCATT 60.001 52.632 9.73 0.00 32.20 3.16
358 359 1.452651 CTCCAATGCGCTGACCCAT 60.453 57.895 9.73 0.00 0.00 4.00
359 360 2.046023 CTCCAATGCGCTGACCCA 60.046 61.111 9.73 0.00 0.00 4.51
360 361 1.675641 AACTCCAATGCGCTGACCC 60.676 57.895 9.73 0.00 0.00 4.46
361 362 1.503542 CAACTCCAATGCGCTGACC 59.496 57.895 9.73 0.00 0.00 4.02
362 363 1.154150 GCAACTCCAATGCGCTGAC 60.154 57.895 9.73 0.00 33.57 3.51
363 364 3.266964 GCAACTCCAATGCGCTGA 58.733 55.556 9.73 0.00 33.57 4.26
365 366 1.002868 AGAGCAACTCCAATGCGCT 60.003 52.632 9.73 0.00 46.89 5.92
368 369 2.716217 ACCTTAGAGCAACTCCAATGC 58.284 47.619 0.00 0.00 44.15 3.56
369 370 6.115446 TGAATACCTTAGAGCAACTCCAATG 58.885 40.000 0.00 0.00 0.00 2.82
370 371 6.313519 TGAATACCTTAGAGCAACTCCAAT 57.686 37.500 0.00 0.00 0.00 3.16
371 372 5.755409 TGAATACCTTAGAGCAACTCCAA 57.245 39.130 0.00 0.00 0.00 3.53
372 373 5.957771 ATGAATACCTTAGAGCAACTCCA 57.042 39.130 0.00 0.00 0.00 3.86
373 374 7.201741 GGAAAATGAATACCTTAGAGCAACTCC 60.202 40.741 0.00 0.00 0.00 3.85
374 375 7.554476 AGGAAAATGAATACCTTAGAGCAACTC 59.446 37.037 0.00 0.00 0.00 3.01
375 376 7.406104 AGGAAAATGAATACCTTAGAGCAACT 58.594 34.615 0.00 0.00 0.00 3.16
376 377 7.631717 AGGAAAATGAATACCTTAGAGCAAC 57.368 36.000 0.00 0.00 0.00 4.17
377 378 8.650143 AAAGGAAAATGAATACCTTAGAGCAA 57.350 30.769 0.00 0.00 41.14 3.91
378 379 8.650143 AAAAGGAAAATGAATACCTTAGAGCA 57.350 30.769 0.00 0.00 41.14 4.26
389 390 9.428097 GCTGAATTCAGTAAAAGGAAAATGAAT 57.572 29.630 30.88 0.00 45.45 2.57
390 391 8.420222 TGCTGAATTCAGTAAAAGGAAAATGAA 58.580 29.630 30.88 0.00 45.45 2.57
391 392 7.950512 TGCTGAATTCAGTAAAAGGAAAATGA 58.049 30.769 30.88 0.00 45.45 2.57
392 393 7.148689 GCTGCTGAATTCAGTAAAAGGAAAATG 60.149 37.037 30.88 14.98 45.45 2.32
393 394 6.870439 GCTGCTGAATTCAGTAAAAGGAAAAT 59.130 34.615 30.88 0.00 45.45 1.82
394 395 6.183360 TGCTGCTGAATTCAGTAAAAGGAAAA 60.183 34.615 30.88 8.18 45.45 2.29
395 396 5.301551 TGCTGCTGAATTCAGTAAAAGGAAA 59.698 36.000 30.88 9.01 45.45 3.13
396 397 4.826733 TGCTGCTGAATTCAGTAAAAGGAA 59.173 37.500 30.88 11.37 45.45 3.36
397 398 4.397420 TGCTGCTGAATTCAGTAAAAGGA 58.603 39.130 30.88 21.92 45.45 3.36
398 399 4.771590 TGCTGCTGAATTCAGTAAAAGG 57.228 40.909 30.88 18.34 45.45 3.11
399 400 5.522456 TGTTGCTGCTGAATTCAGTAAAAG 58.478 37.500 30.88 23.46 45.45 2.27
400 401 5.512753 TGTTGCTGCTGAATTCAGTAAAA 57.487 34.783 30.88 21.67 45.45 1.52
401 402 5.512753 TTGTTGCTGCTGAATTCAGTAAA 57.487 34.783 30.88 18.74 45.45 2.01
402 403 5.710513 ATTGTTGCTGCTGAATTCAGTAA 57.289 34.783 30.88 20.59 45.45 2.24
403 404 5.710513 AATTGTTGCTGCTGAATTCAGTA 57.289 34.783 30.88 26.86 45.45 2.74
404 405 4.595762 AATTGTTGCTGCTGAATTCAGT 57.404 36.364 30.88 9.96 45.45 3.41
405 406 5.706916 AGTAATTGTTGCTGCTGAATTCAG 58.293 37.500 27.82 27.82 46.40 3.02
406 407 5.241285 TGAGTAATTGTTGCTGCTGAATTCA 59.759 36.000 8.12 8.12 0.00 2.57
407 408 5.702865 TGAGTAATTGTTGCTGCTGAATTC 58.297 37.500 0.00 0.00 0.00 2.17
408 409 5.710513 TGAGTAATTGTTGCTGCTGAATT 57.289 34.783 0.00 5.42 0.00 2.17
409 410 5.710513 TTGAGTAATTGTTGCTGCTGAAT 57.289 34.783 0.00 0.00 0.00 2.57
410 411 5.710513 ATTGAGTAATTGTTGCTGCTGAA 57.289 34.783 0.00 0.00 0.00 3.02
411 412 5.463286 CAATTGAGTAATTGTTGCTGCTGA 58.537 37.500 0.00 0.00 45.14 4.26
412 413 5.756950 CAATTGAGTAATTGTTGCTGCTG 57.243 39.130 0.00 0.00 45.14 4.41
422 423 6.731467 ACTGTGGGGATACAATTGAGTAATT 58.269 36.000 13.59 0.00 36.97 1.40
423 424 6.327386 ACTGTGGGGATACAATTGAGTAAT 57.673 37.500 13.59 0.00 39.74 1.89
424 425 5.772393 ACTGTGGGGATACAATTGAGTAA 57.228 39.130 13.59 0.00 39.74 2.24
425 426 6.042781 GGATACTGTGGGGATACAATTGAGTA 59.957 42.308 13.59 6.40 39.74 2.59
426 427 5.163195 GGATACTGTGGGGATACAATTGAGT 60.163 44.000 13.59 4.22 39.74 3.41
427 428 5.308825 GGATACTGTGGGGATACAATTGAG 58.691 45.833 13.59 0.00 39.74 3.02
428 429 5.304686 GGATACTGTGGGGATACAATTGA 57.695 43.478 13.59 0.00 39.74 2.57
469 470 9.802039 GTGGGGGATACAATTGAGTAATTATTA 57.198 33.333 13.59 0.00 34.81 0.98
470 471 8.285891 TGTGGGGGATACAATTGAGTAATTATT 58.714 33.333 13.59 0.00 34.81 1.40
471 472 7.821566 TGTGGGGGATACAATTGAGTAATTAT 58.178 34.615 13.59 0.00 34.81 1.28
472 473 7.092174 ACTGTGGGGGATACAATTGAGTAATTA 60.092 37.037 13.59 0.00 34.81 1.40
473 474 6.086011 TGTGGGGGATACAATTGAGTAATT 57.914 37.500 13.59 0.00 36.97 1.40
474 475 5.193728 ACTGTGGGGGATACAATTGAGTAAT 59.806 40.000 13.59 0.00 39.74 1.89
475 476 4.538490 ACTGTGGGGGATACAATTGAGTAA 59.462 41.667 13.59 0.00 39.74 2.24
476 477 4.108570 ACTGTGGGGGATACAATTGAGTA 58.891 43.478 13.59 0.00 39.74 2.59
477 478 2.919602 ACTGTGGGGGATACAATTGAGT 59.080 45.455 13.59 0.00 39.74 3.41
478 479 3.652057 ACTGTGGGGGATACAATTGAG 57.348 47.619 13.59 0.00 39.74 3.02
479 480 4.104102 GGATACTGTGGGGGATACAATTGA 59.896 45.833 13.59 0.00 39.74 2.57
480 481 4.398319 GGATACTGTGGGGGATACAATTG 58.602 47.826 3.24 3.24 39.74 2.32
481 482 4.724279 GGATACTGTGGGGGATACAATT 57.276 45.455 0.00 0.00 39.74 2.32
521 522 9.802039 GTGGGGGATACAATTGAGTAATTATTA 57.198 33.333 13.59 0.00 34.81 0.98
522 523 8.285891 TGTGGGGGATACAATTGAGTAATTATT 58.714 33.333 13.59 0.00 34.81 1.40
523 524 7.821566 TGTGGGGGATACAATTGAGTAATTAT 58.178 34.615 13.59 0.00 34.81 1.28
524 525 7.092174 ACTGTGGGGGATACAATTGAGTAATTA 60.092 37.037 13.59 0.00 34.81 1.40
525 526 6.086011 TGTGGGGGATACAATTGAGTAATT 57.914 37.500 13.59 0.00 36.97 1.40
526 527 5.193728 ACTGTGGGGGATACAATTGAGTAAT 59.806 40.000 13.59 0.00 39.74 1.89
527 528 4.538490 ACTGTGGGGGATACAATTGAGTAA 59.462 41.667 13.59 0.00 39.74 2.24
528 529 4.108570 ACTGTGGGGGATACAATTGAGTA 58.891 43.478 13.59 0.00 39.74 2.59
529 530 2.919602 ACTGTGGGGGATACAATTGAGT 59.080 45.455 13.59 0.00 39.74 3.41
530 531 3.652057 ACTGTGGGGGATACAATTGAG 57.348 47.619 13.59 0.00 39.74 3.02
531 532 4.724293 TGATACTGTGGGGGATACAATTGA 59.276 41.667 13.59 0.00 39.74 2.57
532 533 5.047566 TGATACTGTGGGGGATACAATTG 57.952 43.478 3.24 3.24 39.74 2.32
533 534 5.930209 ATGATACTGTGGGGGATACAATT 57.070 39.130 0.00 0.00 39.74 2.32
534 535 5.930209 AATGATACTGTGGGGGATACAAT 57.070 39.130 0.00 0.00 39.74 2.71
535 536 5.725551 AAATGATACTGTGGGGGATACAA 57.274 39.130 0.00 0.00 39.74 2.41
536 537 5.725551 AAAATGATACTGTGGGGGATACA 57.274 39.130 0.00 0.00 39.74 2.29
595 596 9.483489 TGGAGTATTAATTGAGTAACTGGAGTA 57.517 33.333 0.00 0.00 0.00 2.59
596 597 8.375493 TGGAGTATTAATTGAGTAACTGGAGT 57.625 34.615 0.00 0.00 0.00 3.85
597 598 8.478877 ACTGGAGTATTAATTGAGTAACTGGAG 58.521 37.037 0.00 0.00 0.00 3.86
598 599 8.375493 ACTGGAGTATTAATTGAGTAACTGGA 57.625 34.615 0.00 0.00 0.00 3.86
622 623 1.925185 GTCCAGCGACGAAAAGGATAC 59.075 52.381 0.00 0.00 0.00 2.24
623 624 2.288961 GTCCAGCGACGAAAAGGATA 57.711 50.000 0.00 0.00 0.00 2.59
624 625 3.139029 GTCCAGCGACGAAAAGGAT 57.861 52.632 0.00 0.00 0.00 3.24
625 626 4.667420 GTCCAGCGACGAAAAGGA 57.333 55.556 0.00 0.00 0.00 3.36
636 637 0.810031 ATTGTGTATCCGCGTCCAGC 60.810 55.000 4.92 0.00 43.95 4.85
637 638 1.593006 GAATTGTGTATCCGCGTCCAG 59.407 52.381 4.92 0.00 0.00 3.86
638 639 1.066787 TGAATTGTGTATCCGCGTCCA 60.067 47.619 4.92 0.00 0.00 4.02
639 640 1.647346 TGAATTGTGTATCCGCGTCC 58.353 50.000 4.92 0.00 0.00 4.79
640 641 4.049186 AGTATGAATTGTGTATCCGCGTC 58.951 43.478 4.92 0.00 0.00 5.19
641 642 4.054780 AGTATGAATTGTGTATCCGCGT 57.945 40.909 4.92 0.00 0.00 6.01
642 643 5.403897 AAAGTATGAATTGTGTATCCGCG 57.596 39.130 0.00 0.00 0.00 6.46
643 644 9.730420 AATTTAAAGTATGAATTGTGTATCCGC 57.270 29.630 0.00 0.00 0.00 5.54
684 685 8.853912 AGGGGTGGTGTAGTATAGTGTATATAT 58.146 37.037 0.00 0.00 0.00 0.86
685 686 8.235855 AGGGGTGGTGTAGTATAGTGTATATA 57.764 38.462 0.00 0.00 0.00 0.86
686 687 7.112372 AGGGGTGGTGTAGTATAGTGTATAT 57.888 40.000 0.00 0.00 0.00 0.86
687 688 6.535161 AGGGGTGGTGTAGTATAGTGTATA 57.465 41.667 0.00 0.00 0.00 1.47
688 689 5.414133 AGGGGTGGTGTAGTATAGTGTAT 57.586 43.478 0.00 0.00 0.00 2.29
689 690 4.886755 AGGGGTGGTGTAGTATAGTGTA 57.113 45.455 0.00 0.00 0.00 2.90
690 691 3.771071 AGGGGTGGTGTAGTATAGTGT 57.229 47.619 0.00 0.00 0.00 3.55
691 692 5.057843 TCTAGGGGTGGTGTAGTATAGTG 57.942 47.826 0.00 0.00 0.00 2.74
692 693 4.730904 ACTCTAGGGGTGGTGTAGTATAGT 59.269 45.833 0.00 0.00 0.00 2.12
693 694 5.321934 ACTCTAGGGGTGGTGTAGTATAG 57.678 47.826 0.00 0.00 0.00 1.31
694 695 7.963720 TCTATACTCTAGGGGTGGTGTAGTATA 59.036 40.741 0.00 0.00 32.52 1.47
695 696 5.944809 ATACTCTAGGGGTGGTGTAGTAT 57.055 43.478 0.00 0.00 0.00 2.12
696 697 6.153204 TCTATACTCTAGGGGTGGTGTAGTA 58.847 44.000 0.00 0.00 0.00 1.82
697 698 4.980342 TCTATACTCTAGGGGTGGTGTAGT 59.020 45.833 0.00 0.00 0.00 2.73
698 699 5.073417 ACTCTATACTCTAGGGGTGGTGTAG 59.927 48.000 0.00 0.00 0.00 2.74
699 700 4.980342 ACTCTATACTCTAGGGGTGGTGTA 59.020 45.833 0.00 0.00 0.00 2.90
749 750 7.450124 AGTATCCACGTCCTTATACTACATG 57.550 40.000 6.78 0.00 34.27 3.21
750 751 6.370994 CGAGTATCCACGTCCTTATACTACAT 59.629 42.308 8.02 0.00 35.75 2.29
754 755 4.965814 TCGAGTATCCACGTCCTTATACT 58.034 43.478 7.84 7.84 37.75 2.12
755 756 5.876612 ATCGAGTATCCACGTCCTTATAC 57.123 43.478 0.00 0.00 0.00 1.47
756 757 7.984422 TTAATCGAGTATCCACGTCCTTATA 57.016 36.000 0.00 0.00 0.00 0.98
757 758 6.889301 TTAATCGAGTATCCACGTCCTTAT 57.111 37.500 0.00 0.00 0.00 1.73
761 762 6.149142 AGAGTATTAATCGAGTATCCACGTCC 59.851 42.308 0.00 0.00 0.00 4.79
784 787 7.676683 ATAGGTGCTTCTAACCAATCTTAGA 57.323 36.000 0.00 0.00 40.40 2.10
804 807 9.451002 AGTAGTGCAGTACAGTGTATATATAGG 57.549 37.037 28.82 0.00 32.79 2.57
813 816 3.056536 CCATGAGTAGTGCAGTACAGTGT 60.057 47.826 28.82 11.95 32.79 3.55
835 841 4.698583 ATTGAGTATCCCGCTATACGTC 57.301 45.455 0.00 0.00 41.42 4.34
839 845 9.696572 AGACTATTAATTGAGTATCCCGCTATA 57.303 33.333 3.83 0.00 0.00 1.31
875 881 0.935898 AGTATCGTCGTCCTGCTACG 59.064 55.000 0.00 1.16 44.19 3.51
936 942 1.407979 ACGGGTAGTGCAGTATAGTGC 59.592 52.381 23.17 23.17 44.27 4.40
943 949 1.848652 ATGTCTACGGGTAGTGCAGT 58.151 50.000 0.00 0.00 34.84 4.40
953 959 8.350852 AGGTTAATTCCTCTATATGTCTACGG 57.649 38.462 0.00 0.00 31.32 4.02
967 973 3.371965 TGGTAGCTCGAGGTTAATTCCT 58.628 45.455 23.90 6.31 40.97 3.36
968 974 3.814005 TGGTAGCTCGAGGTTAATTCC 57.186 47.619 23.90 16.46 0.00 3.01
969 975 7.964604 ATTATTGGTAGCTCGAGGTTAATTC 57.035 36.000 23.90 8.63 0.00 2.17
980 986 3.396260 TGGGCGTATTATTGGTAGCTC 57.604 47.619 0.00 0.00 0.00 4.09
984 990 2.785562 GCCATGGGCGTATTATTGGTA 58.214 47.619 15.13 0.00 39.62 3.25
1013 1019 2.755876 AGAGGCGCTCATGGTCGA 60.756 61.111 7.64 0.00 32.06 4.20
1015 1021 1.812922 CACAGAGGCGCTCATGGTC 60.813 63.158 7.64 0.00 32.06 4.02
1044 1050 1.472480 CCCGCCTTTGTTTCATCGAAT 59.528 47.619 0.00 0.00 0.00 3.34
1105 1111 1.511613 GGAGGATGGTGGAAGATGGA 58.488 55.000 0.00 0.00 0.00 3.41
1119 1125 2.291043 GGCAAAGGACTCGGGAGGA 61.291 63.158 0.00 0.00 0.00 3.71
1193 1199 1.433879 CTGACCACCTCCGATCGTC 59.566 63.158 15.09 3.48 0.00 4.20
1230 1236 4.085009 CCAAGAAGAAGCCCAATTTCTCT 58.915 43.478 0.00 0.00 33.92 3.10
1237 1243 0.555769 ACCACCAAGAAGAAGCCCAA 59.444 50.000 0.00 0.00 0.00 4.12
1296 1302 3.210012 AAAGCCCCGCACCACAGAT 62.210 57.895 0.00 0.00 0.00 2.90
1299 1305 4.196778 TGAAAGCCCCGCACCACA 62.197 61.111 0.00 0.00 0.00 4.17
1342 1348 0.462581 TCGTCCCGCGTGTAGTAGAT 60.463 55.000 4.92 0.00 42.13 1.98
1359 1365 3.502595 TGTACTTGACTTGTCTCTCCTCG 59.497 47.826 2.35 0.00 0.00 4.63
1371 1377 2.154462 GCATTGCCACTGTACTTGACT 58.846 47.619 0.00 0.00 0.00 3.41
1383 1389 1.523154 GAAACAGGTCCGCATTGCCA 61.523 55.000 2.41 0.00 0.00 4.92
1509 1536 4.421515 AGCTGCCGCATGAGCCTT 62.422 61.111 2.05 0.00 39.10 4.35
1539 1566 1.202428 GCCTCAGACACTATCCCGAAC 60.202 57.143 0.00 0.00 0.00 3.95
1590 1620 0.249073 CATCTAGGCAACCCGTCTCG 60.249 60.000 0.00 0.00 35.76 4.04
1608 1638 2.437180 CAGCCGAGGAGCAATGCA 60.437 61.111 8.35 0.00 34.23 3.96
1676 1706 4.681978 AACTGGCGTCGGAGTGCC 62.682 66.667 0.98 12.96 46.85 5.01
1716 1746 4.418328 AGGCCGCCATAAACGCCA 62.418 61.111 13.15 0.00 31.79 5.69
1722 1752 1.815196 CAATTGCAGGCCGCCATAA 59.185 52.632 13.15 3.80 41.33 1.90
1723 1753 2.784356 GCAATTGCAGGCCGCCATA 61.784 57.895 25.36 0.00 41.33 2.74
1724 1754 4.151582 GCAATTGCAGGCCGCCAT 62.152 61.111 25.36 8.39 41.33 4.40
1734 1764 4.661125 TGTTATCATCAACGAGCAATTGC 58.339 39.130 23.05 23.05 42.49 3.56
1746 1776 5.181811 CACCTTCTGTTGCTTGTTATCATCA 59.818 40.000 0.00 0.00 0.00 3.07
1749 1779 4.275689 CACACCTTCTGTTGCTTGTTATCA 59.724 41.667 0.00 0.00 0.00 2.15
1752 1782 2.948979 CCACACCTTCTGTTGCTTGTTA 59.051 45.455 0.00 0.00 0.00 2.41
1753 1783 1.750778 CCACACCTTCTGTTGCTTGTT 59.249 47.619 0.00 0.00 0.00 2.83
1754 1784 1.392589 CCACACCTTCTGTTGCTTGT 58.607 50.000 0.00 0.00 0.00 3.16
1756 1786 0.258774 ACCCACACCTTCTGTTGCTT 59.741 50.000 0.00 0.00 0.00 3.91
1757 1787 0.466189 CACCCACACCTTCTGTTGCT 60.466 55.000 0.00 0.00 0.00 3.91
1758 1788 0.465460 TCACCCACACCTTCTGTTGC 60.465 55.000 0.00 0.00 0.00 4.17
1759 1789 1.949525 CTTCACCCACACCTTCTGTTG 59.050 52.381 0.00 0.00 0.00 3.33
1761 1791 0.474184 CCTTCACCCACACCTTCTGT 59.526 55.000 0.00 0.00 0.00 3.41
1762 1792 0.474184 ACCTTCACCCACACCTTCTG 59.526 55.000 0.00 0.00 0.00 3.02
1764 1794 1.172812 GCACCTTCACCCACACCTTC 61.173 60.000 0.00 0.00 0.00 3.46
1765 1795 1.152756 GCACCTTCACCCACACCTT 60.153 57.895 0.00 0.00 0.00 3.50
1766 1796 2.515901 GCACCTTCACCCACACCT 59.484 61.111 0.00 0.00 0.00 4.00
1769 1814 4.263572 CCGGCACCTTCACCCACA 62.264 66.667 0.00 0.00 0.00 4.17
1793 1838 4.680237 TCACAGCCAACGCTCCCG 62.680 66.667 0.00 0.00 43.95 5.14
1796 1841 2.551270 CGTTCACAGCCAACGCTC 59.449 61.111 0.00 0.00 43.95 5.03
1804 1849 3.712881 GTCGCCCACGTTCACAGC 61.713 66.667 0.00 0.00 41.18 4.40
1805 1850 1.557443 GAAGTCGCCCACGTTCACAG 61.557 60.000 0.00 0.00 41.18 3.66
1806 1851 1.593209 GAAGTCGCCCACGTTCACA 60.593 57.895 0.00 0.00 41.18 3.58
1842 1890 2.351418 CACAACGCTCTTGAACTTGTCA 59.649 45.455 0.00 0.00 0.00 3.58
1847 1895 1.532868 GATGCACAACGCTCTTGAACT 59.467 47.619 0.00 0.00 43.06 3.01
1858 1906 0.041312 GACACCACACGATGCACAAC 60.041 55.000 0.00 0.00 0.00 3.32
1859 1907 1.163420 GGACACCACACGATGCACAA 61.163 55.000 0.00 0.00 0.00 3.33
1860 1908 1.596752 GGACACCACACGATGCACA 60.597 57.895 0.00 0.00 0.00 4.57
1866 1914 0.461163 CACTGTTGGACACCACACGA 60.461 55.000 0.00 0.00 30.78 4.35
1869 1917 0.393673 CCACACTGTTGGACACCACA 60.394 55.000 3.78 0.00 39.24 4.17
1880 1928 0.401738 CAATCTGGGTCCCACACTGT 59.598 55.000 6.47 0.00 0.00 3.55
1881 1929 0.401738 ACAATCTGGGTCCCACACTG 59.598 55.000 6.47 0.00 0.00 3.66
1884 1932 1.676968 CGACAATCTGGGTCCCACA 59.323 57.895 6.47 0.00 31.55 4.17
1890 1938 1.374947 CACCACCGACAATCTGGGT 59.625 57.895 0.00 0.00 33.37 4.51
1981 2029 1.107538 TCCTCCGCCTTGATAGTCCG 61.108 60.000 0.00 0.00 0.00 4.79
2046 2095 4.245660 TCAAGTAATCGAGAGCAGTTTGG 58.754 43.478 0.00 0.00 0.00 3.28
2055 2104 7.818997 TTATTAGAGCCTCAAGTAATCGAGA 57.181 36.000 0.00 0.00 0.00 4.04
2096 3642 4.324402 GGTCTATTTTGCATTGCTCAAACG 59.676 41.667 10.49 4.91 33.66 3.60
2196 3742 7.291651 AGGAATGGCTGATTGGATGAAATTATT 59.708 33.333 0.00 0.00 0.00 1.40
2219 3765 6.816640 CGTATTTAAGACTGAACAATGGAGGA 59.183 38.462 0.00 0.00 0.00 3.71
2220 3766 6.816640 TCGTATTTAAGACTGAACAATGGAGG 59.183 38.462 0.00 0.00 0.00 4.30
2242 3792 6.874134 GCAGGTATTAAATGGTCAGATATCGT 59.126 38.462 0.00 0.00 0.00 3.73
2264 3815 3.181397 CATTGGCGGTTCTATTTTGCAG 58.819 45.455 0.00 0.00 0.00 4.41
2297 3848 5.840940 AAAACTTCTACACGCAGATGTAC 57.159 39.130 0.00 0.00 33.21 2.90
2337 3888 2.486592 TCGACGAGTGCTTTGATGAGTA 59.513 45.455 0.00 0.00 0.00 2.59
2385 3977 3.628769 GGATGGAGGAAGTAGGTCTCTGT 60.629 52.174 0.00 0.00 0.00 3.41
2450 4042 9.173021 ACTACTCCATCTCAGAATATAAGATCG 57.827 37.037 0.00 0.00 0.00 3.69
2462 4054 9.268268 CTACTACTTTCTACTACTCCATCTCAG 57.732 40.741 0.00 0.00 0.00 3.35
2486 4078 6.824958 AAAGGAATAGCTGAATACCCACTA 57.175 37.500 0.00 0.00 0.00 2.74
2524 4130 1.375908 GGAGAAGGCGACATGTGCA 60.376 57.895 1.15 0.00 0.00 4.57
2525 4131 1.078848 AGGAGAAGGCGACATGTGC 60.079 57.895 1.15 7.44 0.00 4.57
2531 4137 0.321996 AAAGGTCAGGAGAAGGCGAC 59.678 55.000 0.00 0.00 0.00 5.19
2545 4155 0.036010 CAGCGTCTGGGATGAAAGGT 60.036 55.000 0.00 0.00 0.00 3.50
2628 4238 5.779806 AATAGTAGTTCATCACGCAACAC 57.220 39.130 0.00 0.00 0.00 3.32
2654 4264 1.269723 TGACGTGGACAGAAGCACTAG 59.730 52.381 0.00 0.00 0.00 2.57
2680 4334 1.008538 GGCTTTGCACAACACGAGG 60.009 57.895 0.00 0.00 0.00 4.63
2681 4335 0.317269 CAGGCTTTGCACAACACGAG 60.317 55.000 0.00 0.00 0.00 4.18
2682 4336 1.723608 CCAGGCTTTGCACAACACGA 61.724 55.000 0.00 0.00 0.00 4.35
2683 4337 1.299316 CCAGGCTTTGCACAACACG 60.299 57.895 0.00 0.00 0.00 4.49
2684 4338 0.675633 ATCCAGGCTTTGCACAACAC 59.324 50.000 0.00 0.00 0.00 3.32
2685 4339 0.675083 CATCCAGGCTTTGCACAACA 59.325 50.000 0.00 0.00 0.00 3.33
2686 4340 0.961019 TCATCCAGGCTTTGCACAAC 59.039 50.000 0.00 0.00 0.00 3.32
2687 4341 1.250328 CTCATCCAGGCTTTGCACAA 58.750 50.000 0.00 0.00 0.00 3.33
2688 4342 1.246056 GCTCATCCAGGCTTTGCACA 61.246 55.000 0.00 0.00 0.00 4.57
2689 4343 0.964358 AGCTCATCCAGGCTTTGCAC 60.964 55.000 0.00 0.00 34.96 4.57
2690 4344 0.620030 TAGCTCATCCAGGCTTTGCA 59.380 50.000 0.00 0.00 39.65 4.08
2691 4345 1.134280 TCTAGCTCATCCAGGCTTTGC 60.134 52.381 0.00 0.00 39.65 3.68
2692 4346 2.170187 ACTCTAGCTCATCCAGGCTTTG 59.830 50.000 0.00 0.00 39.65 2.77
2693 4347 2.476199 ACTCTAGCTCATCCAGGCTTT 58.524 47.619 0.00 0.00 39.65 3.51
2694 4348 2.173126 ACTCTAGCTCATCCAGGCTT 57.827 50.000 0.00 0.00 39.65 4.35
2695 4349 2.038659 GAACTCTAGCTCATCCAGGCT 58.961 52.381 0.00 0.00 41.92 4.58
2696 4350 2.038659 AGAACTCTAGCTCATCCAGGC 58.961 52.381 0.00 0.00 0.00 4.85
2697 4351 3.295093 TCAGAACTCTAGCTCATCCAGG 58.705 50.000 0.00 0.00 0.00 4.45
2698 4352 4.159321 TGTTCAGAACTCTAGCTCATCCAG 59.841 45.833 14.51 0.00 0.00 3.86
2699 4353 4.089361 TGTTCAGAACTCTAGCTCATCCA 58.911 43.478 14.51 0.00 0.00 3.41
2700 4354 4.727507 TGTTCAGAACTCTAGCTCATCC 57.272 45.455 14.51 0.00 0.00 3.51
2701 4355 6.815641 TGATTTGTTCAGAACTCTAGCTCATC 59.184 38.462 14.51 5.22 0.00 2.92
2702 4356 6.705302 TGATTTGTTCAGAACTCTAGCTCAT 58.295 36.000 14.51 0.00 0.00 2.90
2703 4357 6.101650 TGATTTGTTCAGAACTCTAGCTCA 57.898 37.500 14.51 6.25 0.00 4.26
2704 4358 7.608308 AATGATTTGTTCAGAACTCTAGCTC 57.392 36.000 14.51 4.04 37.89 4.09
2705 4359 9.678260 AATAATGATTTGTTCAGAACTCTAGCT 57.322 29.630 14.51 0.00 37.89 3.32
2706 4360 9.713740 CAATAATGATTTGTTCAGAACTCTAGC 57.286 33.333 14.51 3.53 37.89 3.42
2707 4361 9.713740 GCAATAATGATTTGTTCAGAACTCTAG 57.286 33.333 14.51 0.00 37.89 2.43
2708 4362 9.453572 AGCAATAATGATTTGTTCAGAACTCTA 57.546 29.630 14.51 0.52 37.89 2.43
2709 4363 8.345724 AGCAATAATGATTTGTTCAGAACTCT 57.654 30.769 14.51 0.00 37.89 3.24
2710 4364 8.976986 AAGCAATAATGATTTGTTCAGAACTC 57.023 30.769 14.51 4.65 37.89 3.01
2711 4365 8.800332 AGAAGCAATAATGATTTGTTCAGAACT 58.200 29.630 14.51 0.00 34.77 3.01
2712 4366 8.857216 CAGAAGCAATAATGATTTGTTCAGAAC 58.143 33.333 6.32 6.32 34.77 3.01
2713 4367 8.030692 CCAGAAGCAATAATGATTTGTTCAGAA 58.969 33.333 0.00 0.00 34.77 3.02
2714 4368 7.394077 TCCAGAAGCAATAATGATTTGTTCAGA 59.606 33.333 0.00 0.00 34.77 3.27
2715 4369 7.487189 GTCCAGAAGCAATAATGATTTGTTCAG 59.513 37.037 0.00 0.00 34.77 3.02
2716 4370 7.177216 AGTCCAGAAGCAATAATGATTTGTTCA 59.823 33.333 0.00 0.00 34.77 3.18
2717 4371 7.542025 AGTCCAGAAGCAATAATGATTTGTTC 58.458 34.615 0.00 0.00 34.77 3.18
2718 4372 7.472334 AGTCCAGAAGCAATAATGATTTGTT 57.528 32.000 0.00 0.00 34.77 2.83
2730 4384 4.887071 ACAACAATACAAGTCCAGAAGCAA 59.113 37.500 0.00 0.00 0.00 3.91
2866 4520 8.378172 ACTTGAACGAATTTTAGAATGACTCA 57.622 30.769 0.00 0.00 0.00 3.41
2903 4559 9.284968 CTATTTTGGTATGATTACGGGAAAGAT 57.715 33.333 0.00 0.00 0.00 2.40
2909 4565 6.554334 CCACTATTTTGGTATGATTACGGG 57.446 41.667 0.00 0.00 0.00 5.28
2923 4579 5.766174 TCGGCTCTGTTAAAACCACTATTTT 59.234 36.000 0.00 0.00 35.89 1.82
2945 4603 2.823196 TGCAACGAAATTATGGCTCG 57.177 45.000 0.00 0.00 38.53 5.03
2966 4624 5.610982 TCTCCTACATTGGTTAATAGGGCAT 59.389 40.000 0.00 0.00 0.00 4.40
2967 4625 4.972568 TCTCCTACATTGGTTAATAGGGCA 59.027 41.667 0.00 0.00 0.00 5.36
2986 4644 6.127196 TGGTTTATTGGCAAATATGGTTCTCC 60.127 38.462 3.01 0.00 0.00 3.71
2989 4647 8.421002 AGTATGGTTTATTGGCAAATATGGTTC 58.579 33.333 3.01 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.