Multiple sequence alignment - TraesCS5B01G565400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G565400 chr5B 100.000 3052 0 0 1 3052 710327028 710323977 0.000000e+00 5637.0
1 TraesCS5B01G565400 chr5B 82.038 1119 121 28 1017 2098 694203742 694202667 0.000000e+00 880.0
2 TraesCS5B01G565400 chr5B 82.224 1007 105 26 1058 2015 710314393 710313412 0.000000e+00 800.0
3 TraesCS5B01G565400 chr5B 79.745 1096 117 43 995 2034 694289345 694288299 0.000000e+00 697.0
4 TraesCS5B01G565400 chr5B 84.452 283 29 12 97 372 694290552 694290278 6.490000e-67 265.0
5 TraesCS5B01G565400 chr5B 92.398 171 11 2 2881 3050 133868049 133867880 3.040000e-60 243.0
6 TraesCS5B01G565400 chr5B 90.857 175 16 0 2878 3052 691092054 691091880 5.090000e-58 235.0
7 TraesCS5B01G565400 chr5B 91.279 172 14 1 2881 3052 518313186 518313016 1.830000e-57 233.0
8 TraesCS5B01G565400 chr5B 78.033 305 41 10 995 1296 694262487 694262206 5.230000e-38 169.0
9 TraesCS5B01G565400 chr5B 95.385 65 1 2 2124 2187 710311872 710311809 5.380000e-18 102.0
10 TraesCS5B01G565400 chr5B 100.000 31 0 0 2448 2478 626060269 626060299 1.180000e-04 58.4
11 TraesCS5B01G565400 chr5B 100.000 29 0 0 2448 2476 255578128 255578156 2.000000e-03 54.7
12 TraesCS5B01G565400 chr5B 100.000 29 0 0 967 995 694289411 694289383 2.000000e-03 54.7
13 TraesCS5B01G565400 chr4A 82.987 1346 100 60 851 2128 604856542 604857826 0.000000e+00 1098.0
14 TraesCS5B01G565400 chr4A 82.275 835 106 13 1011 1817 613544349 613543529 0.000000e+00 684.0
15 TraesCS5B01G565400 chr4A 78.725 1020 134 30 1058 2015 604940696 604941694 3.370000e-169 604.0
16 TraesCS5B01G565400 chr4A 93.112 392 20 6 397 787 604856155 604856540 4.420000e-158 568.0
17 TraesCS5B01G565400 chr4A 79.942 693 80 34 2122 2784 604857868 604858531 3.590000e-124 455.0
18 TraesCS5B01G565400 chr4A 85.926 270 24 9 97 360 613545278 613545017 3.000000e-70 276.0
19 TraesCS5B01G565400 chr4A 96.875 96 2 1 2787 2882 604858791 604858885 3.150000e-35 159.0
20 TraesCS5B01G565400 chr4A 95.385 65 1 2 2124 2187 604942663 604942726 5.380000e-18 102.0
21 TraesCS5B01G565400 chr4A 95.000 40 2 0 956 995 613544447 613544408 2.540000e-06 63.9
22 TraesCS5B01G565400 chr4A 78.824 85 13 4 2448 2530 444151188 444151107 5.000000e-03 52.8
23 TraesCS5B01G565400 chr5D 84.034 1165 86 29 851 1925 559979265 559978111 0.000000e+00 1029.0
24 TraesCS5B01G565400 chr5D 81.376 1090 120 32 990 2030 556423302 556424357 0.000000e+00 811.0
25 TraesCS5B01G565400 chr5D 93.622 392 20 3 397 787 559979654 559979267 5.670000e-162 580.0
26 TraesCS5B01G565400 chr5D 83.816 414 35 17 369 780 556422495 556422878 6.220000e-97 364.0
27 TraesCS5B01G565400 chr5D 87.624 202 12 9 98 292 556422172 556422367 3.960000e-54 222.0
28 TraesCS5B01G565400 chr5D 96.923 65 0 2 2124 2187 559976786 559976723 1.160000e-19 108.0
29 TraesCS5B01G565400 chr5D 94.118 68 1 1 894 958 556423160 556423227 1.940000e-17 100.0
30 TraesCS5B01G565400 chr5D 97.436 39 1 0 957 995 556423253 556423291 1.960000e-07 67.6
31 TraesCS5B01G565400 chr1D 75.225 779 128 29 1034 1776 421226277 421227026 2.960000e-80 309.0
32 TraesCS5B01G565400 chr1A 75.095 787 116 36 1029 1776 517519736 517520481 8.280000e-76 294.0
33 TraesCS5B01G565400 chr6B 92.529 174 11 1 2881 3052 229707960 229708133 6.530000e-62 248.0
34 TraesCS5B01G565400 chr6B 91.860 172 12 2 2879 3049 55351109 55351279 3.930000e-59 239.0
35 TraesCS5B01G565400 chr6B 91.279 172 15 0 2881 3052 27693293 27693122 5.090000e-58 235.0
36 TraesCS5B01G565400 chr7B 90.698 172 16 0 2881 3052 491387853 491388024 2.370000e-56 230.0
37 TraesCS5B01G565400 chr7B 90.230 174 17 0 2879 3052 125500914 125500741 8.510000e-56 228.0
38 TraesCS5B01G565400 chr2B 90.230 174 17 0 2879 3052 793484127 793483954 8.510000e-56 228.0
39 TraesCS5B01G565400 chr1B 76.887 424 69 10 1373 1776 570526241 570526655 2.380000e-51 213.0
40 TraesCS5B01G565400 chr5A 92.157 51 3 1 2428 2477 367616207 367616157 1.520000e-08 71.3
41 TraesCS5B01G565400 chr7D 100.000 29 0 0 2448 2476 116633680 116633708 2.000000e-03 54.7
42 TraesCS5B01G565400 chr2D 100.000 29 0 0 2448 2476 586844356 586844384 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G565400 chr5B 710323977 710327028 3051 True 5637.000000 5637 100.000000 1 3052 1 chr5B.!!$R6 3051
1 TraesCS5B01G565400 chr5B 694202667 694203742 1075 True 880.000000 880 82.038000 1017 2098 1 chr5B.!!$R4 1081
2 TraesCS5B01G565400 chr5B 710311809 710314393 2584 True 451.000000 800 88.804500 1058 2187 2 chr5B.!!$R8 1129
3 TraesCS5B01G565400 chr5B 694288299 694290552 2253 True 338.900000 697 88.065667 97 2034 3 chr5B.!!$R7 1937
4 TraesCS5B01G565400 chr4A 604856155 604858885 2730 False 570.000000 1098 88.229000 397 2882 4 chr4A.!!$F1 2485
5 TraesCS5B01G565400 chr4A 604940696 604942726 2030 False 353.000000 604 87.055000 1058 2187 2 chr4A.!!$F2 1129
6 TraesCS5B01G565400 chr4A 613543529 613545278 1749 True 341.300000 684 87.733667 97 1817 3 chr4A.!!$R2 1720
7 TraesCS5B01G565400 chr5D 559976723 559979654 2931 True 572.333333 1029 91.526333 397 2187 3 chr5D.!!$R1 1790
8 TraesCS5B01G565400 chr5D 556422172 556424357 2185 False 312.920000 811 88.874000 98 2030 5 chr5D.!!$F1 1932
9 TraesCS5B01G565400 chr1D 421226277 421227026 749 False 309.000000 309 75.225000 1034 1776 1 chr1D.!!$F1 742
10 TraesCS5B01G565400 chr1A 517519736 517520481 745 False 294.000000 294 75.095000 1029 1776 1 chr1A.!!$F1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 372 1.332195 TCAGGGTGAGTGAGTGACAG 58.668 55.0 0.00 0.0 0.00 3.51 F
1158 1681 0.615331 AGCTGAAGAATTCCCGCTGA 59.385 50.0 0.65 0.0 46.93 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 2272 0.035458 CCTTCGACTTCCTGCCTGTT 59.965 55.0 0.0 0.0 0.00 3.16 R
2965 5716 0.028505 CGGCGAAATTCAGCATCCTG 59.971 55.0 0.0 0.0 40.54 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.707440 TTTGTCAATTGGAGTTTAGCTCAA 57.293 33.333 5.42 0.00 45.88 3.02
24 25 6.899393 TTGTCAATTGGAGTTTAGCTCAAT 57.101 33.333 5.42 0.00 45.88 2.57
25 26 6.899393 TGTCAATTGGAGTTTAGCTCAATT 57.101 33.333 5.42 0.00 45.88 2.32
26 27 7.288810 TGTCAATTGGAGTTTAGCTCAATTT 57.711 32.000 5.42 0.00 45.88 1.82
27 28 7.370383 TGTCAATTGGAGTTTAGCTCAATTTC 58.630 34.615 5.42 4.60 45.88 2.17
28 29 7.231317 TGTCAATTGGAGTTTAGCTCAATTTCT 59.769 33.333 5.42 0.00 45.88 2.52
29 30 7.540055 GTCAATTGGAGTTTAGCTCAATTTCTG 59.460 37.037 5.42 0.00 45.88 3.02
30 31 7.231317 TCAATTGGAGTTTAGCTCAATTTCTGT 59.769 33.333 5.42 0.00 45.88 3.41
31 32 5.947228 TGGAGTTTAGCTCAATTTCTGTG 57.053 39.130 0.00 0.00 45.88 3.66
32 33 4.216257 TGGAGTTTAGCTCAATTTCTGTGC 59.784 41.667 0.00 0.00 45.88 4.57
38 39 3.911661 GCTCAATTTCTGTGCTTGAGT 57.088 42.857 11.78 0.00 44.88 3.41
39 40 4.234530 GCTCAATTTCTGTGCTTGAGTT 57.765 40.909 11.78 0.00 44.88 3.01
40 41 3.979495 GCTCAATTTCTGTGCTTGAGTTG 59.021 43.478 11.78 4.34 44.88 3.16
41 42 4.498682 GCTCAATTTCTGTGCTTGAGTTGT 60.499 41.667 11.78 0.00 44.88 3.32
42 43 5.581126 TCAATTTCTGTGCTTGAGTTGTT 57.419 34.783 0.00 0.00 0.00 2.83
43 44 5.964758 TCAATTTCTGTGCTTGAGTTGTTT 58.035 33.333 0.00 0.00 0.00 2.83
44 45 6.397272 TCAATTTCTGTGCTTGAGTTGTTTT 58.603 32.000 0.00 0.00 0.00 2.43
45 46 6.873076 TCAATTTCTGTGCTTGAGTTGTTTTT 59.127 30.769 0.00 0.00 0.00 1.94
46 47 6.892310 ATTTCTGTGCTTGAGTTGTTTTTC 57.108 33.333 0.00 0.00 0.00 2.29
47 48 4.370364 TCTGTGCTTGAGTTGTTTTTCC 57.630 40.909 0.00 0.00 0.00 3.13
48 49 3.761218 TCTGTGCTTGAGTTGTTTTTCCA 59.239 39.130 0.00 0.00 0.00 3.53
49 50 4.107622 CTGTGCTTGAGTTGTTTTTCCAG 58.892 43.478 0.00 0.00 0.00 3.86
50 51 3.761218 TGTGCTTGAGTTGTTTTTCCAGA 59.239 39.130 0.00 0.00 0.00 3.86
51 52 4.219507 TGTGCTTGAGTTGTTTTTCCAGAA 59.780 37.500 0.00 0.00 0.00 3.02
52 53 4.800471 GTGCTTGAGTTGTTTTTCCAGAAG 59.200 41.667 0.00 0.00 0.00 2.85
53 54 4.462483 TGCTTGAGTTGTTTTTCCAGAAGT 59.538 37.500 0.00 0.00 0.00 3.01
54 55 5.047377 TGCTTGAGTTGTTTTTCCAGAAGTT 60.047 36.000 0.00 0.00 0.00 2.66
55 56 5.289434 GCTTGAGTTGTTTTTCCAGAAGTTG 59.711 40.000 0.00 0.00 0.00 3.16
56 57 5.975693 TGAGTTGTTTTTCCAGAAGTTGT 57.024 34.783 0.00 0.00 0.00 3.32
57 58 6.339587 TGAGTTGTTTTTCCAGAAGTTGTT 57.660 33.333 0.00 0.00 0.00 2.83
58 59 6.754193 TGAGTTGTTTTTCCAGAAGTTGTTT 58.246 32.000 0.00 0.00 0.00 2.83
59 60 6.866248 TGAGTTGTTTTTCCAGAAGTTGTTTC 59.134 34.615 0.00 0.00 35.97 2.78
61 62 7.441836 AGTTGTTTTTCCAGAAGTTGTTTCTT 58.558 30.769 0.00 0.00 43.68 2.52
62 63 7.598869 AGTTGTTTTTCCAGAAGTTGTTTCTTC 59.401 33.333 0.00 0.00 43.68 2.87
63 64 6.987386 TGTTTTTCCAGAAGTTGTTTCTTCA 58.013 32.000 8.73 0.00 43.68 3.02
64 65 7.610865 TGTTTTTCCAGAAGTTGTTTCTTCAT 58.389 30.769 8.73 0.00 43.68 2.57
65 66 8.093927 TGTTTTTCCAGAAGTTGTTTCTTCATT 58.906 29.630 8.73 0.00 43.68 2.57
66 67 8.935844 GTTTTTCCAGAAGTTGTTTCTTCATTT 58.064 29.630 8.73 0.00 43.68 2.32
67 68 8.477984 TTTTCCAGAAGTTGTTTCTTCATTTG 57.522 30.769 8.73 0.06 43.68 2.32
68 69 6.773976 TCCAGAAGTTGTTTCTTCATTTGT 57.226 33.333 8.73 0.00 43.68 2.83
69 70 7.169158 TCCAGAAGTTGTTTCTTCATTTGTT 57.831 32.000 8.73 0.00 43.68 2.83
70 71 7.257722 TCCAGAAGTTGTTTCTTCATTTGTTC 58.742 34.615 8.73 0.00 43.68 3.18
71 72 7.122650 TCCAGAAGTTGTTTCTTCATTTGTTCT 59.877 33.333 8.73 0.00 43.68 3.01
72 73 7.221452 CCAGAAGTTGTTTCTTCATTTGTTCTG 59.779 37.037 8.73 0.00 43.68 3.02
73 74 6.753744 AGAAGTTGTTTCTTCATTTGTTCTGC 59.246 34.615 8.73 0.00 43.68 4.26
74 75 6.212888 AGTTGTTTCTTCATTTGTTCTGCT 57.787 33.333 0.00 0.00 0.00 4.24
75 76 6.038356 AGTTGTTTCTTCATTTGTTCTGCTG 58.962 36.000 0.00 0.00 0.00 4.41
76 77 5.581126 TGTTTCTTCATTTGTTCTGCTGT 57.419 34.783 0.00 0.00 0.00 4.40
77 78 6.691754 TGTTTCTTCATTTGTTCTGCTGTA 57.308 33.333 0.00 0.00 0.00 2.74
78 79 7.275888 TGTTTCTTCATTTGTTCTGCTGTAT 57.724 32.000 0.00 0.00 0.00 2.29
79 80 7.362662 TGTTTCTTCATTTGTTCTGCTGTATC 58.637 34.615 0.00 0.00 0.00 2.24
80 81 7.013178 TGTTTCTTCATTTGTTCTGCTGTATCA 59.987 33.333 0.00 0.00 0.00 2.15
81 82 7.692460 TTCTTCATTTGTTCTGCTGTATCAT 57.308 32.000 0.00 0.00 0.00 2.45
82 83 7.080353 TCTTCATTTGTTCTGCTGTATCATG 57.920 36.000 0.00 0.00 0.00 3.07
83 84 6.656270 TCTTCATTTGTTCTGCTGTATCATGT 59.344 34.615 0.00 0.00 0.00 3.21
84 85 6.185852 TCATTTGTTCTGCTGTATCATGTG 57.814 37.500 0.00 0.00 0.00 3.21
85 86 5.706833 TCATTTGTTCTGCTGTATCATGTGT 59.293 36.000 0.00 0.00 0.00 3.72
86 87 6.878389 TCATTTGTTCTGCTGTATCATGTGTA 59.122 34.615 0.00 0.00 0.00 2.90
87 88 7.553760 TCATTTGTTCTGCTGTATCATGTGTAT 59.446 33.333 0.00 0.00 0.00 2.29
88 89 6.908870 TTGTTCTGCTGTATCATGTGTATC 57.091 37.500 0.00 0.00 0.00 2.24
89 90 5.976458 TGTTCTGCTGTATCATGTGTATCA 58.024 37.500 0.00 0.00 0.00 2.15
90 91 6.585416 TGTTCTGCTGTATCATGTGTATCAT 58.415 36.000 0.00 0.00 37.22 2.45
116 117 1.342174 CTTTGCCTGCAACTTGACCAT 59.658 47.619 3.64 0.00 35.46 3.55
125 126 5.922544 CCTGCAACTTGACCATAAAGAAAAG 59.077 40.000 0.00 0.00 0.00 2.27
126 127 5.841810 TGCAACTTGACCATAAAGAAAAGG 58.158 37.500 0.00 0.00 0.00 3.11
144 146 8.214721 AGAAAAGGAAAAAGTGTCTAGAGTTG 57.785 34.615 0.00 0.00 0.00 3.16
180 183 2.026636 TCCTGCCTAACCGCAAATTACT 60.027 45.455 0.00 0.00 38.56 2.24
188 191 6.809689 GCCTAACCGCAAATTACTGTTATTTT 59.190 34.615 2.29 0.00 0.00 1.82
190 193 6.921332 AACCGCAAATTACTGTTATTTTCG 57.079 33.333 14.25 14.25 33.48 3.46
193 196 6.081049 CCGCAAATTACTGTTATTTTCGTCA 58.919 36.000 17.80 0.00 32.37 4.35
205 208 8.280909 TGTTATTTTCGTCATTTTCTTTCTGC 57.719 30.769 0.00 0.00 0.00 4.26
209 212 5.749596 TTCGTCATTTTCTTTCTGCAAGA 57.250 34.783 0.00 0.00 44.68 3.02
251 260 6.122782 CACGACAAATTAATCGCAGATACAG 58.877 40.000 10.34 0.00 45.12 2.74
261 270 4.918810 TCGCAGATACAGTGTATCACAT 57.081 40.909 34.06 18.25 36.74 3.21
262 271 4.610945 TCGCAGATACAGTGTATCACATG 58.389 43.478 34.06 26.45 36.74 3.21
292 318 2.084546 GCCAGTGGAGTGTTACATTCC 58.915 52.381 18.32 18.32 40.11 3.01
303 329 8.475639 TGGAGTGTTACATTCCTCTAATCTAAC 58.524 37.037 23.86 0.00 40.31 2.34
346 372 1.332195 TCAGGGTGAGTGAGTGACAG 58.668 55.000 0.00 0.00 0.00 3.51
360 394 3.768468 GTGACAGACACCTAGCTACTC 57.232 52.381 0.00 0.00 43.05 2.59
361 395 2.424246 GTGACAGACACCTAGCTACTCC 59.576 54.545 0.00 0.00 43.05 3.85
362 396 2.309162 TGACAGACACCTAGCTACTCCT 59.691 50.000 0.00 0.00 0.00 3.69
363 397 3.522343 TGACAGACACCTAGCTACTCCTA 59.478 47.826 0.00 0.00 0.00 2.94
364 398 3.878699 GACAGACACCTAGCTACTCCTAC 59.121 52.174 0.00 0.00 0.00 3.18
365 399 3.524380 ACAGACACCTAGCTACTCCTACT 59.476 47.826 0.00 0.00 0.00 2.57
366 400 4.018233 ACAGACACCTAGCTACTCCTACTT 60.018 45.833 0.00 0.00 0.00 2.24
367 401 5.191323 ACAGACACCTAGCTACTCCTACTTA 59.809 44.000 0.00 0.00 0.00 2.24
370 404 5.824421 ACACCTAGCTACTCCTACTTAACA 58.176 41.667 0.00 0.00 0.00 2.41
371 405 6.251471 ACACCTAGCTACTCCTACTTAACAA 58.749 40.000 0.00 0.00 0.00 2.83
373 407 6.377712 CACCTAGCTACTCCTACTTAACAAGT 59.622 42.308 0.00 0.00 45.40 3.16
483 627 9.061610 GTACGTGATGAATGGTAAATTTGAAAG 57.938 33.333 0.00 0.00 0.00 2.62
545 704 8.828029 GCACTATTGCTTTAAGTGTTCTATTC 57.172 34.615 0.00 0.00 46.17 1.75
663 825 3.138884 TGCATTTTGAGTAGAGCACCA 57.861 42.857 0.00 0.00 0.00 4.17
752 915 2.485426 CTCGAACATGTCCACTGCAAAT 59.515 45.455 0.00 0.00 0.00 2.32
793 956 9.457436 TTTGAATTACTTTAATGTACTCCCTCC 57.543 33.333 0.90 0.00 0.00 4.30
794 957 7.270047 TGAATTACTTTAATGTACTCCCTCCG 58.730 38.462 0.90 0.00 0.00 4.63
795 958 6.803366 ATTACTTTAATGTACTCCCTCCGT 57.197 37.500 0.90 0.00 0.00 4.69
796 959 6.610075 TTACTTTAATGTACTCCCTCCGTT 57.390 37.500 0.90 0.00 0.00 4.44
797 960 5.494390 ACTTTAATGTACTCCCTCCGTTT 57.506 39.130 0.00 0.00 0.00 3.60
798 961 5.485620 ACTTTAATGTACTCCCTCCGTTTC 58.514 41.667 0.00 0.00 0.00 2.78
799 962 5.012354 ACTTTAATGTACTCCCTCCGTTTCA 59.988 40.000 0.00 0.00 0.00 2.69
800 963 5.687166 TTAATGTACTCCCTCCGTTTCAT 57.313 39.130 0.00 0.00 0.00 2.57
801 964 6.795144 TTAATGTACTCCCTCCGTTTCATA 57.205 37.500 0.00 0.00 0.00 2.15
802 965 5.687166 AATGTACTCCCTCCGTTTCATAA 57.313 39.130 0.00 0.00 0.00 1.90
803 966 4.730949 TGTACTCCCTCCGTTTCATAAG 57.269 45.455 0.00 0.00 0.00 1.73
804 967 4.091549 TGTACTCCCTCCGTTTCATAAGT 58.908 43.478 0.00 0.00 0.00 2.24
805 968 4.529377 TGTACTCCCTCCGTTTCATAAGTT 59.471 41.667 0.00 0.00 0.00 2.66
806 969 3.939066 ACTCCCTCCGTTTCATAAGTTG 58.061 45.455 0.00 0.00 0.00 3.16
807 970 3.326880 ACTCCCTCCGTTTCATAAGTTGT 59.673 43.478 0.00 0.00 0.00 3.32
808 971 4.529377 ACTCCCTCCGTTTCATAAGTTGTA 59.471 41.667 0.00 0.00 0.00 2.41
809 972 4.824289 TCCCTCCGTTTCATAAGTTGTAC 58.176 43.478 0.00 0.00 0.00 2.90
810 973 4.529377 TCCCTCCGTTTCATAAGTTGTACT 59.471 41.667 0.00 0.00 0.00 2.73
811 974 5.716228 TCCCTCCGTTTCATAAGTTGTACTA 59.284 40.000 0.00 0.00 0.00 1.82
812 975 6.211184 TCCCTCCGTTTCATAAGTTGTACTAA 59.789 38.462 0.00 0.00 0.00 2.24
813 976 6.875195 CCCTCCGTTTCATAAGTTGTACTAAA 59.125 38.462 0.00 0.00 0.00 1.85
814 977 7.551617 CCCTCCGTTTCATAAGTTGTACTAAAT 59.448 37.037 0.00 0.00 0.00 1.40
815 978 8.601476 CCTCCGTTTCATAAGTTGTACTAAATC 58.399 37.037 0.00 0.00 0.00 2.17
816 979 9.146984 CTCCGTTTCATAAGTTGTACTAAATCA 57.853 33.333 0.00 0.00 0.00 2.57
817 980 9.146984 TCCGTTTCATAAGTTGTACTAAATCAG 57.853 33.333 0.00 0.00 0.00 2.90
818 981 8.388103 CCGTTTCATAAGTTGTACTAAATCAGG 58.612 37.037 0.00 0.00 0.00 3.86
819 982 8.388103 CGTTTCATAAGTTGTACTAAATCAGGG 58.612 37.037 0.00 0.00 0.00 4.45
820 983 9.444600 GTTTCATAAGTTGTACTAAATCAGGGA 57.555 33.333 0.00 0.00 0.00 4.20
821 984 9.444600 TTTCATAAGTTGTACTAAATCAGGGAC 57.555 33.333 0.00 0.00 0.00 4.46
822 985 7.262772 TCATAAGTTGTACTAAATCAGGGACG 58.737 38.462 0.00 0.00 0.00 4.79
823 986 5.733620 AAGTTGTACTAAATCAGGGACGA 57.266 39.130 0.00 0.00 0.00 4.20
824 987 5.733620 AGTTGTACTAAATCAGGGACGAA 57.266 39.130 0.00 0.00 0.00 3.85
825 988 6.295719 AGTTGTACTAAATCAGGGACGAAT 57.704 37.500 0.00 0.00 0.00 3.34
826 989 7.414222 AGTTGTACTAAATCAGGGACGAATA 57.586 36.000 0.00 0.00 0.00 1.75
827 990 7.844009 AGTTGTACTAAATCAGGGACGAATAA 58.156 34.615 0.00 0.00 0.00 1.40
828 991 8.483758 AGTTGTACTAAATCAGGGACGAATAAT 58.516 33.333 0.00 0.00 0.00 1.28
829 992 9.754382 GTTGTACTAAATCAGGGACGAATAATA 57.246 33.333 0.00 0.00 0.00 0.98
837 1000 7.900782 ATCAGGGACGAATAATATAAAACGG 57.099 36.000 0.00 0.00 0.00 4.44
838 1001 7.053316 TCAGGGACGAATAATATAAAACGGA 57.947 36.000 0.00 0.00 0.00 4.69
839 1002 7.149973 TCAGGGACGAATAATATAAAACGGAG 58.850 38.462 0.00 0.00 0.00 4.63
840 1003 6.367969 CAGGGACGAATAATATAAAACGGAGG 59.632 42.308 0.00 0.00 0.00 4.30
841 1004 5.640783 GGGACGAATAATATAAAACGGAGGG 59.359 44.000 0.00 0.00 0.00 4.30
842 1005 6.458210 GGACGAATAATATAAAACGGAGGGA 58.542 40.000 0.00 0.00 0.00 4.20
843 1006 6.589139 GGACGAATAATATAAAACGGAGGGAG 59.411 42.308 0.00 0.00 0.00 4.30
844 1007 7.059202 ACGAATAATATAAAACGGAGGGAGT 57.941 36.000 0.00 0.00 0.00 3.85
845 1008 8.181904 ACGAATAATATAAAACGGAGGGAGTA 57.818 34.615 0.00 0.00 0.00 2.59
846 1009 8.084684 ACGAATAATATAAAACGGAGGGAGTAC 58.915 37.037 0.00 0.00 0.00 2.73
847 1010 8.302438 CGAATAATATAAAACGGAGGGAGTACT 58.698 37.037 0.00 0.00 0.00 2.73
848 1011 9.420551 GAATAATATAAAACGGAGGGAGTACTG 57.579 37.037 0.00 0.00 0.00 2.74
849 1012 3.538634 ATAAAACGGAGGGAGTACTGC 57.461 47.619 5.70 5.70 0.00 4.40
850 1013 1.349067 AAAACGGAGGGAGTACTGCT 58.651 50.000 14.52 0.15 0.00 4.24
851 1014 1.349067 AAACGGAGGGAGTACTGCTT 58.651 50.000 14.52 6.52 0.00 3.91
852 1015 1.349067 AACGGAGGGAGTACTGCTTT 58.651 50.000 14.52 3.04 0.00 3.51
853 1016 2.226962 ACGGAGGGAGTACTGCTTTA 57.773 50.000 14.52 0.00 0.00 1.85
859 1022 5.927115 CGGAGGGAGTACTGCTTTATAAATC 59.073 44.000 14.52 0.00 0.00 2.17
861 1024 7.156000 GGAGGGAGTACTGCTTTATAAATCTC 58.844 42.308 14.52 8.37 0.00 2.75
884 1285 3.052036 CTCTTCAAAACAAATGTGCCCG 58.948 45.455 0.00 0.00 0.00 6.13
943 1378 5.970640 TCCAATAATTCCAACTCTACCCTCT 59.029 40.000 0.00 0.00 0.00 3.69
965 1431 2.463620 GCATCATTCTCGCGCCACA 61.464 57.895 0.00 0.00 0.00 4.17
1158 1681 0.615331 AGCTGAAGAATTCCCGCTGA 59.385 50.000 0.65 0.00 46.93 4.26
1430 2011 2.671619 CGACCGTGGGGCATGTTT 60.672 61.111 0.00 0.00 36.48 2.83
1673 2272 1.992834 TAGCGGGAAGGCCATGACA 60.993 57.895 5.01 0.00 35.15 3.58
1733 2343 1.309013 AGAGGGCATGGGGATGGAA 60.309 57.895 0.00 0.00 0.00 3.53
1941 2727 2.946990 AGGAAACCGTTTGTGAAATCGT 59.053 40.909 0.00 0.00 0.00 3.73
1950 2736 0.249699 TGTGAAATCGTCGGCTGTGT 60.250 50.000 0.00 0.00 0.00 3.72
1962 2748 1.244816 GGCTGTGTAGGTTTGGTTCC 58.755 55.000 0.00 0.00 0.00 3.62
2022 4365 8.527810 GGTCAAAATGAATGGTTTTGGATAGTA 58.472 33.333 10.36 0.00 43.36 1.82
2023 4366 9.573133 GTCAAAATGAATGGTTTTGGATAGTAG 57.427 33.333 10.36 0.00 43.36 2.57
2024 4367 9.308000 TCAAAATGAATGGTTTTGGATAGTAGT 57.692 29.630 10.36 0.00 43.36 2.73
2083 4491 3.126343 ACGAATTTTATGGTTGACGGCTC 59.874 43.478 0.00 0.00 0.00 4.70
2092 4500 0.586802 GTTGACGGCTCAAGTGGAAC 59.413 55.000 0.00 0.00 37.06 3.62
2175 4641 6.598525 CACTCACTCACGTGCAATTATAAAA 58.401 36.000 11.67 0.00 40.99 1.52
2229 4695 6.771267 ACCTACTTTTGGTCCTTCTACTTTTG 59.229 38.462 0.00 0.00 31.03 2.44
2232 4698 2.579410 TGGTCCTTCTACTTTTGGCC 57.421 50.000 0.00 0.00 0.00 5.36
2237 4703 4.505808 GTCCTTCTACTTTTGGCCTAGTC 58.494 47.826 3.32 0.00 0.00 2.59
2243 4709 6.963083 TCTACTTTTGGCCTAGTCTAGATC 57.037 41.667 8.56 1.08 0.00 2.75
2246 4712 4.407296 ACTTTTGGCCTAGTCTAGATCTGG 59.593 45.833 5.18 1.65 0.00 3.86
2248 4714 3.231207 TGGCCTAGTCTAGATCTGGTC 57.769 52.381 5.18 0.00 0.00 4.02
2249 4715 2.514160 TGGCCTAGTCTAGATCTGGTCA 59.486 50.000 5.18 1.07 0.00 4.02
2250 4716 2.888414 GGCCTAGTCTAGATCTGGTCAC 59.112 54.545 5.18 0.00 0.00 3.67
2251 4717 3.435890 GGCCTAGTCTAGATCTGGTCACT 60.436 52.174 5.18 5.60 0.00 3.41
2252 4718 3.818773 GCCTAGTCTAGATCTGGTCACTC 59.181 52.174 5.18 0.00 0.00 3.51
2254 4720 5.441500 CCTAGTCTAGATCTGGTCACTCAA 58.558 45.833 5.18 0.00 0.00 3.02
2257 4723 4.947388 AGTCTAGATCTGGTCACTCAACTC 59.053 45.833 5.18 0.00 0.00 3.01
2258 4724 4.947388 GTCTAGATCTGGTCACTCAACTCT 59.053 45.833 5.18 0.00 0.00 3.24
2259 4725 4.946772 TCTAGATCTGGTCACTCAACTCTG 59.053 45.833 5.18 0.00 0.00 3.35
2260 4726 3.772387 AGATCTGGTCACTCAACTCTGA 58.228 45.455 0.00 0.00 0.00 3.27
2265 4738 3.653344 TGGTCACTCAACTCTGAAATCG 58.347 45.455 0.00 0.00 0.00 3.34
2277 4750 3.399330 TCTGAAATCGGACAACTTCACC 58.601 45.455 0.00 0.00 0.00 4.02
2279 4752 3.399330 TGAAATCGGACAACTTCACCTC 58.601 45.455 0.00 0.00 0.00 3.85
2280 4753 3.181459 TGAAATCGGACAACTTCACCTCA 60.181 43.478 0.00 0.00 0.00 3.86
2288 4761 4.511826 GGACAACTTCACCTCAAACTACTG 59.488 45.833 0.00 0.00 0.00 2.74
2292 4765 6.828785 ACAACTTCACCTCAAACTACTGAAAT 59.171 34.615 0.00 0.00 0.00 2.17
2294 4767 6.591935 ACTTCACCTCAAACTACTGAAATCA 58.408 36.000 0.00 0.00 0.00 2.57
2301 4774 6.708054 CCTCAAACTACTGAAATCAGACAAGT 59.292 38.462 16.93 12.84 46.59 3.16
2307 4780 8.316640 ACTACTGAAATCAGACAAGTTTCATC 57.683 34.615 16.93 0.00 46.59 2.92
2311 4784 2.879103 TCAGACAAGTTTCATCCCCC 57.121 50.000 0.00 0.00 0.00 5.40
2314 4787 1.003233 AGACAAGTTTCATCCCCCGAC 59.997 52.381 0.00 0.00 0.00 4.79
2329 4802 1.080974 CGACGCGGTTCTGGTACTT 60.081 57.895 12.47 0.00 0.00 2.24
2333 4806 1.615392 ACGCGGTTCTGGTACTTACTT 59.385 47.619 12.47 0.00 0.00 2.24
2339 4812 3.840078 GGTTCTGGTACTTACTTACCCCA 59.160 47.826 0.00 0.00 40.96 4.96
2345 4818 5.623169 TGGTACTTACTTACCCCAGTTTTG 58.377 41.667 0.00 0.00 40.96 2.44
2348 4821 4.722220 ACTTACTTACCCCAGTTTTGACC 58.278 43.478 0.00 0.00 0.00 4.02
2364 4837 3.394674 TGACCGTGCTGACTCAATTTA 57.605 42.857 0.00 0.00 0.00 1.40
2365 4838 3.064207 TGACCGTGCTGACTCAATTTAC 58.936 45.455 0.00 0.00 0.00 2.01
2370 4843 3.918591 CGTGCTGACTCAATTTACGTACT 59.081 43.478 0.00 0.00 0.00 2.73
2419 4894 8.911247 AAAAATTGGCGTACTATTTTCAGATC 57.089 30.769 11.96 0.00 41.46 2.75
2420 4895 7.865706 AAATTGGCGTACTATTTTCAGATCT 57.134 32.000 0.00 0.00 31.87 2.75
2423 4898 5.839621 TGGCGTACTATTTTCAGATCTACC 58.160 41.667 0.00 0.00 0.00 3.18
2441 4933 6.920569 TCTACCTATCTTTTTCAAATCCGC 57.079 37.500 0.00 0.00 0.00 5.54
2455 4947 2.430546 ATCCGCGCATGTTTTTCAAA 57.569 40.000 8.75 0.00 0.00 2.69
2459 4951 2.057316 CGCGCATGTTTTTCAAATCCA 58.943 42.857 8.75 0.00 0.00 3.41
2504 4996 5.999205 ACCATTTTGAAATCCATGCACTA 57.001 34.783 0.00 0.00 0.00 2.74
2513 5005 6.397272 TGAAATCCATGCACTATTTTCAACC 58.603 36.000 11.93 0.00 0.00 3.77
2521 5013 6.701145 TGCACTATTTTCAACCTTGTGTAA 57.299 33.333 0.00 0.00 0.00 2.41
2522 5014 7.283625 TGCACTATTTTCAACCTTGTGTAAT 57.716 32.000 0.00 0.00 0.00 1.89
2555 5047 6.832520 AAAATTCACATAATTTTTGGGGGC 57.167 33.333 3.27 0.00 36.70 5.80
2565 5057 2.246719 TTTTGGGGGCAAATTTCGTG 57.753 45.000 0.00 0.00 0.00 4.35
2569 5061 0.966179 GGGGGCAAATTTCGTGAACT 59.034 50.000 0.00 0.00 0.00 3.01
2572 5064 2.403259 GGGCAAATTTCGTGAACTTGG 58.597 47.619 0.00 0.00 0.00 3.61
2574 5066 3.491792 GGGCAAATTTCGTGAACTTGGAA 60.492 43.478 0.00 0.00 0.00 3.53
2578 5070 6.184706 GCAAATTTCGTGAACTTGGAAAAAG 58.815 36.000 0.00 0.00 33.81 2.27
2579 5071 6.183360 GCAAATTTCGTGAACTTGGAAAAAGT 60.183 34.615 0.00 0.00 33.81 2.66
2580 5072 7.009723 GCAAATTTCGTGAACTTGGAAAAAGTA 59.990 33.333 0.00 0.00 33.81 2.24
2581 5073 8.531530 CAAATTTCGTGAACTTGGAAAAAGTAG 58.468 33.333 0.00 0.00 33.81 2.57
2582 5074 5.744666 TTCGTGAACTTGGAAAAAGTAGG 57.255 39.130 0.00 0.00 0.00 3.18
2583 5075 3.562557 TCGTGAACTTGGAAAAAGTAGGC 59.437 43.478 0.00 0.00 0.00 3.93
2584 5076 3.606153 CGTGAACTTGGAAAAAGTAGGCG 60.606 47.826 0.00 0.00 0.00 5.52
2585 5077 3.562557 GTGAACTTGGAAAAAGTAGGCGA 59.437 43.478 0.00 0.00 0.00 5.54
2586 5078 4.035909 GTGAACTTGGAAAAAGTAGGCGAA 59.964 41.667 0.00 0.00 0.00 4.70
2587 5079 4.035909 TGAACTTGGAAAAAGTAGGCGAAC 59.964 41.667 0.00 0.00 0.00 3.95
2588 5080 3.816994 ACTTGGAAAAAGTAGGCGAACT 58.183 40.909 0.00 0.00 0.00 3.01
2589 5081 4.204799 ACTTGGAAAAAGTAGGCGAACTT 58.795 39.130 2.89 2.89 41.46 2.66
2590 5082 4.036380 ACTTGGAAAAAGTAGGCGAACTTG 59.964 41.667 8.71 0.00 39.62 3.16
2591 5083 3.811083 TGGAAAAAGTAGGCGAACTTGA 58.189 40.909 8.71 0.00 39.62 3.02
2592 5084 4.200874 TGGAAAAAGTAGGCGAACTTGAA 58.799 39.130 8.71 0.00 39.62 2.69
2593 5085 4.641094 TGGAAAAAGTAGGCGAACTTGAAA 59.359 37.500 8.71 0.00 39.62 2.69
2594 5086 5.125739 TGGAAAAAGTAGGCGAACTTGAAAA 59.874 36.000 8.71 0.00 39.62 2.29
2595 5087 6.037726 GGAAAAAGTAGGCGAACTTGAAAAA 58.962 36.000 8.71 0.00 39.62 1.94
2617 5109 7.790861 AAAAGTACGCCGATTTAGAAAAATG 57.209 32.000 0.00 0.00 35.41 2.32
2619 5111 5.864986 AGTACGCCGATTTAGAAAAATGTG 58.135 37.500 0.00 0.00 35.41 3.21
2620 5112 3.498082 ACGCCGATTTAGAAAAATGTGC 58.502 40.909 0.00 0.00 35.41 4.57
2622 5114 4.104776 CGCCGATTTAGAAAAATGTGCAT 58.895 39.130 0.00 0.00 35.41 3.96
2700 5193 5.842619 TTCAAAAACGATCATGCATTTGG 57.157 34.783 0.00 0.00 0.00 3.28
2707 5200 5.138125 ACGATCATGCATTTGGAAAAAGT 57.862 34.783 0.00 0.00 0.00 2.66
2710 5203 6.092092 CGATCATGCATTTGGAAAAAGTACA 58.908 36.000 0.00 0.00 0.00 2.90
2714 5207 3.632604 TGCATTTGGAAAAAGTACACGGA 59.367 39.130 0.00 0.00 0.00 4.69
2719 5212 4.231718 TGGAAAAAGTACACGGATTTGC 57.768 40.909 0.00 0.00 0.00 3.68
2827 5578 7.706607 CGATATGGTGGTATGTACATATTCAGG 59.293 40.741 18.27 3.88 36.83 3.86
2882 5633 4.717877 CCAGTGCAATGGATATGGTTAGA 58.282 43.478 28.87 0.00 43.57 2.10
2883 5634 4.758674 CCAGTGCAATGGATATGGTTAGAG 59.241 45.833 28.87 0.00 43.57 2.43
2884 5635 4.214971 CAGTGCAATGGATATGGTTAGAGC 59.785 45.833 6.18 0.00 0.00 4.09
2885 5636 4.136796 GTGCAATGGATATGGTTAGAGCA 58.863 43.478 0.00 0.00 0.00 4.26
2886 5637 4.763793 GTGCAATGGATATGGTTAGAGCAT 59.236 41.667 0.00 0.00 39.88 3.79
2887 5638 5.005740 TGCAATGGATATGGTTAGAGCATC 58.994 41.667 0.00 0.00 37.51 3.91
2929 5680 2.364972 CCTCCCCAGGCGATTTATTT 57.635 50.000 0.00 0.00 30.98 1.40
2930 5681 1.956477 CCTCCCCAGGCGATTTATTTG 59.044 52.381 0.00 0.00 30.98 2.32
2931 5682 1.338020 CTCCCCAGGCGATTTATTTGC 59.662 52.381 0.00 0.00 0.00 3.68
2932 5683 0.030638 CCCCAGGCGATTTATTTGCG 59.969 55.000 0.00 0.00 35.33 4.85
2936 5687 3.902234 GCGATTTATTTGCGCCGG 58.098 55.556 4.18 0.00 44.55 6.13
2937 5688 1.063488 GCGATTTATTTGCGCCGGT 59.937 52.632 4.18 0.00 44.55 5.28
2938 5689 1.199852 GCGATTTATTTGCGCCGGTG 61.200 55.000 11.67 11.67 44.55 4.94
2939 5690 1.199852 CGATTTATTTGCGCCGGTGC 61.200 55.000 32.83 32.83 0.00 5.01
2940 5691 0.100503 GATTTATTTGCGCCGGTGCT 59.899 50.000 37.39 22.19 35.36 4.40
2941 5692 0.179140 ATTTATTTGCGCCGGTGCTG 60.179 50.000 37.39 10.99 35.36 4.41
2942 5693 1.237954 TTTATTTGCGCCGGTGCTGA 61.238 50.000 37.39 26.36 35.36 4.26
2943 5694 1.237954 TTATTTGCGCCGGTGCTGAA 61.238 50.000 37.39 30.17 35.36 3.02
2944 5695 1.237954 TATTTGCGCCGGTGCTGAAA 61.238 50.000 37.39 29.62 35.36 2.69
2945 5696 2.081425 ATTTGCGCCGGTGCTGAAAA 62.081 50.000 37.39 28.95 35.36 2.29
2946 5697 2.284798 TTTGCGCCGGTGCTGAAAAA 62.285 50.000 37.39 26.46 35.36 1.94
2960 5711 3.427670 AAAAACGGCCCAGTCGTG 58.572 55.556 0.00 0.00 45.33 4.35
2961 5712 2.841160 AAAAACGGCCCAGTCGTGC 61.841 57.895 0.00 0.00 45.33 5.34
2967 5718 4.767255 GCCCAGTCGTGCCCTCAG 62.767 72.222 0.00 0.00 0.00 3.35
2968 5719 4.087892 CCCAGTCGTGCCCTCAGG 62.088 72.222 0.00 0.00 0.00 3.86
2969 5720 2.997315 CCAGTCGTGCCCTCAGGA 60.997 66.667 0.00 0.00 35.02 3.86
2970 5721 2.362369 CCAGTCGTGCCCTCAGGAT 61.362 63.158 0.00 0.00 39.04 3.24
2971 5722 1.153489 CAGTCGTGCCCTCAGGATG 60.153 63.158 0.00 0.00 39.04 3.51
2972 5723 2.512515 GTCGTGCCCTCAGGATGC 60.513 66.667 0.00 0.00 39.04 3.91
2973 5724 2.685017 TCGTGCCCTCAGGATGCT 60.685 61.111 0.00 0.00 34.76 3.79
2974 5725 2.513204 CGTGCCCTCAGGATGCTG 60.513 66.667 8.12 8.12 34.76 4.41
2975 5726 2.993008 GTGCCCTCAGGATGCTGA 59.007 61.111 16.73 16.73 34.76 4.26
2976 5727 1.300963 GTGCCCTCAGGATGCTGAA 59.699 57.895 18.24 0.00 34.76 3.02
2977 5728 0.106819 GTGCCCTCAGGATGCTGAAT 60.107 55.000 18.24 0.00 34.76 2.57
2978 5729 0.627451 TGCCCTCAGGATGCTGAATT 59.373 50.000 18.24 0.00 34.76 2.17
2979 5730 1.006281 TGCCCTCAGGATGCTGAATTT 59.994 47.619 18.24 0.00 34.76 1.82
2980 5731 1.680207 GCCCTCAGGATGCTGAATTTC 59.320 52.381 18.24 4.32 34.76 2.17
2981 5732 1.945394 CCCTCAGGATGCTGAATTTCG 59.055 52.381 18.24 5.95 34.76 3.46
2982 5733 1.332997 CCTCAGGATGCTGAATTTCGC 59.667 52.381 18.24 6.36 34.76 4.70
2983 5734 1.332997 CTCAGGATGCTGAATTTCGCC 59.667 52.381 18.24 0.00 34.76 5.54
2984 5735 0.028505 CAGGATGCTGAATTTCGCCG 59.971 55.000 8.85 0.00 0.00 6.46
2985 5736 1.097547 AGGATGCTGAATTTCGCCGG 61.098 55.000 0.00 0.00 0.00 6.13
2986 5737 1.298638 GATGCTGAATTTCGCCGGC 60.299 57.895 19.07 19.07 35.34 6.13
2987 5738 1.718757 GATGCTGAATTTCGCCGGCT 61.719 55.000 26.68 4.40 35.77 5.52
2988 5739 1.718757 ATGCTGAATTTCGCCGGCTC 61.719 55.000 26.68 15.54 35.77 4.70
2989 5740 2.703409 CTGAATTTCGCCGGCTCG 59.297 61.111 26.68 10.37 0.00 5.03
3001 5752 2.254350 GGCTCGGACCGTTTTTGC 59.746 61.111 14.79 11.14 0.00 3.68
3002 5753 2.127383 GCTCGGACCGTTTTTGCG 60.127 61.111 14.79 0.00 0.00 4.85
3003 5754 2.127383 CTCGGACCGTTTTTGCGC 60.127 61.111 14.79 0.00 0.00 6.09
3004 5755 3.588891 CTCGGACCGTTTTTGCGCC 62.589 63.158 14.79 0.00 0.00 6.53
3005 5756 4.693525 CGGACCGTTTTTGCGCCC 62.694 66.667 4.18 0.00 0.00 6.13
3006 5757 4.693525 GGACCGTTTTTGCGCCCG 62.694 66.667 4.18 0.00 0.00 6.13
3007 5758 4.693525 GACCGTTTTTGCGCCCGG 62.694 66.667 4.18 11.37 45.72 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.707440 TTGAGCTAAACTCCAATTGACAAA 57.293 33.333 7.12 0.00 45.61 2.83
1 2 6.899393 ATTGAGCTAAACTCCAATTGACAA 57.101 33.333 7.12 0.00 45.61 3.18
2 3 6.899393 AATTGAGCTAAACTCCAATTGACA 57.101 33.333 7.12 0.00 45.61 3.58
3 4 7.540055 CAGAAATTGAGCTAAACTCCAATTGAC 59.460 37.037 7.12 7.28 45.61 3.18
4 5 7.231317 ACAGAAATTGAGCTAAACTCCAATTGA 59.769 33.333 7.12 0.00 45.61 2.57
5 6 7.327761 CACAGAAATTGAGCTAAACTCCAATTG 59.672 37.037 8.95 0.00 45.61 2.32
6 7 7.373493 CACAGAAATTGAGCTAAACTCCAATT 58.627 34.615 3.62 3.62 45.61 2.32
7 8 6.571150 GCACAGAAATTGAGCTAAACTCCAAT 60.571 38.462 0.00 0.00 45.61 3.16
8 9 5.278463 GCACAGAAATTGAGCTAAACTCCAA 60.278 40.000 0.00 0.00 45.61 3.53
9 10 4.216257 GCACAGAAATTGAGCTAAACTCCA 59.784 41.667 0.00 0.00 45.61 3.86
10 11 4.727475 GCACAGAAATTGAGCTAAACTCC 58.273 43.478 0.00 0.00 45.61 3.85
20 21 5.581126 AACAACTCAAGCACAGAAATTGA 57.419 34.783 0.00 0.00 0.00 2.57
21 22 6.651755 AAAACAACTCAAGCACAGAAATTG 57.348 33.333 0.00 0.00 0.00 2.32
22 23 6.313658 GGAAAAACAACTCAAGCACAGAAATT 59.686 34.615 0.00 0.00 0.00 1.82
23 24 5.812127 GGAAAAACAACTCAAGCACAGAAAT 59.188 36.000 0.00 0.00 0.00 2.17
24 25 5.167845 GGAAAAACAACTCAAGCACAGAAA 58.832 37.500 0.00 0.00 0.00 2.52
25 26 4.219507 TGGAAAAACAACTCAAGCACAGAA 59.780 37.500 0.00 0.00 0.00 3.02
26 27 3.761218 TGGAAAAACAACTCAAGCACAGA 59.239 39.130 0.00 0.00 0.00 3.41
27 28 4.107622 CTGGAAAAACAACTCAAGCACAG 58.892 43.478 0.00 0.00 0.00 3.66
28 29 3.761218 TCTGGAAAAACAACTCAAGCACA 59.239 39.130 0.00 0.00 0.00 4.57
29 30 4.370364 TCTGGAAAAACAACTCAAGCAC 57.630 40.909 0.00 0.00 0.00 4.40
30 31 4.462483 ACTTCTGGAAAAACAACTCAAGCA 59.538 37.500 0.00 0.00 0.00 3.91
31 32 4.998788 ACTTCTGGAAAAACAACTCAAGC 58.001 39.130 0.00 0.00 0.00 4.01
32 33 6.389906 ACAACTTCTGGAAAAACAACTCAAG 58.610 36.000 0.00 0.00 0.00 3.02
33 34 6.339587 ACAACTTCTGGAAAAACAACTCAA 57.660 33.333 0.00 0.00 0.00 3.02
34 35 5.975693 ACAACTTCTGGAAAAACAACTCA 57.024 34.783 0.00 0.00 0.00 3.41
35 36 7.090808 AGAAACAACTTCTGGAAAAACAACTC 58.909 34.615 0.00 0.00 43.09 3.01
36 37 6.993079 AGAAACAACTTCTGGAAAAACAACT 58.007 32.000 0.00 0.00 43.09 3.16
37 38 7.383843 TGAAGAAACAACTTCTGGAAAAACAAC 59.616 33.333 0.00 0.00 44.00 3.32
38 39 7.437748 TGAAGAAACAACTTCTGGAAAAACAA 58.562 30.769 0.00 0.00 44.00 2.83
39 40 6.987386 TGAAGAAACAACTTCTGGAAAAACA 58.013 32.000 0.00 0.00 44.00 2.83
40 41 8.479313 AATGAAGAAACAACTTCTGGAAAAAC 57.521 30.769 0.00 0.00 44.00 2.43
41 42 8.934825 CAAATGAAGAAACAACTTCTGGAAAAA 58.065 29.630 0.00 0.00 44.00 1.94
42 43 8.093927 ACAAATGAAGAAACAACTTCTGGAAAA 58.906 29.630 0.00 0.00 44.00 2.29
43 44 7.610865 ACAAATGAAGAAACAACTTCTGGAAA 58.389 30.769 0.00 0.00 44.00 3.13
44 45 7.169158 ACAAATGAAGAAACAACTTCTGGAA 57.831 32.000 0.00 0.00 44.00 3.53
45 46 6.773976 ACAAATGAAGAAACAACTTCTGGA 57.226 33.333 0.00 0.00 44.00 3.86
46 47 7.221452 CAGAACAAATGAAGAAACAACTTCTGG 59.779 37.037 0.00 0.00 44.00 3.86
47 48 7.253883 GCAGAACAAATGAAGAAACAACTTCTG 60.254 37.037 0.00 0.00 44.00 3.02
48 49 6.753744 GCAGAACAAATGAAGAAACAACTTCT 59.246 34.615 0.00 0.00 46.92 2.85
49 50 6.753744 AGCAGAACAAATGAAGAAACAACTTC 59.246 34.615 0.00 0.00 44.31 3.01
50 51 6.532657 CAGCAGAACAAATGAAGAAACAACTT 59.467 34.615 0.00 0.00 0.00 2.66
51 52 6.038356 CAGCAGAACAAATGAAGAAACAACT 58.962 36.000 0.00 0.00 0.00 3.16
52 53 5.807011 ACAGCAGAACAAATGAAGAAACAAC 59.193 36.000 0.00 0.00 0.00 3.32
53 54 5.964758 ACAGCAGAACAAATGAAGAAACAA 58.035 33.333 0.00 0.00 0.00 2.83
54 55 5.581126 ACAGCAGAACAAATGAAGAAACA 57.419 34.783 0.00 0.00 0.00 2.83
55 56 7.362662 TGATACAGCAGAACAAATGAAGAAAC 58.637 34.615 0.00 0.00 0.00 2.78
56 57 7.509141 TGATACAGCAGAACAAATGAAGAAA 57.491 32.000 0.00 0.00 0.00 2.52
57 58 7.175467 ACATGATACAGCAGAACAAATGAAGAA 59.825 33.333 0.00 0.00 0.00 2.52
58 59 6.656270 ACATGATACAGCAGAACAAATGAAGA 59.344 34.615 0.00 0.00 0.00 2.87
59 60 6.745907 CACATGATACAGCAGAACAAATGAAG 59.254 38.462 0.00 0.00 0.00 3.02
60 61 6.207221 ACACATGATACAGCAGAACAAATGAA 59.793 34.615 0.00 0.00 0.00 2.57
61 62 5.706833 ACACATGATACAGCAGAACAAATGA 59.293 36.000 0.00 0.00 0.00 2.57
62 63 5.946298 ACACATGATACAGCAGAACAAATG 58.054 37.500 0.00 0.00 0.00 2.32
63 64 7.553760 TGATACACATGATACAGCAGAACAAAT 59.446 33.333 0.00 0.00 0.00 2.32
64 65 6.878389 TGATACACATGATACAGCAGAACAAA 59.122 34.615 0.00 0.00 0.00 2.83
65 66 6.405538 TGATACACATGATACAGCAGAACAA 58.594 36.000 0.00 0.00 0.00 2.83
66 67 5.976458 TGATACACATGATACAGCAGAACA 58.024 37.500 0.00 0.00 0.00 3.18
80 81 3.119388 GGCAAAGCACACATGATACACAT 60.119 43.478 0.00 0.00 40.17 3.21
81 82 2.228582 GGCAAAGCACACATGATACACA 59.771 45.455 0.00 0.00 0.00 3.72
82 83 2.489329 AGGCAAAGCACACATGATACAC 59.511 45.455 0.00 0.00 0.00 2.90
83 84 2.488937 CAGGCAAAGCACACATGATACA 59.511 45.455 0.00 0.00 0.00 2.29
84 85 2.733227 GCAGGCAAAGCACACATGATAC 60.733 50.000 0.00 0.00 0.00 2.24
85 86 1.473677 GCAGGCAAAGCACACATGATA 59.526 47.619 0.00 0.00 0.00 2.15
86 87 0.245539 GCAGGCAAAGCACACATGAT 59.754 50.000 0.00 0.00 0.00 2.45
87 88 1.108132 TGCAGGCAAAGCACACATGA 61.108 50.000 0.00 0.00 37.02 3.07
88 89 0.249531 TTGCAGGCAAAGCACACATG 60.250 50.000 3.86 0.00 42.54 3.21
89 90 0.249573 GTTGCAGGCAAAGCACACAT 60.250 50.000 8.47 0.00 42.54 3.21
90 91 1.141449 GTTGCAGGCAAAGCACACA 59.859 52.632 8.47 0.00 42.54 3.72
91 92 0.179103 AAGTTGCAGGCAAAGCACAC 60.179 50.000 8.47 0.00 42.54 3.82
92 93 0.179105 CAAGTTGCAGGCAAAGCACA 60.179 50.000 8.47 0.00 42.54 4.57
93 94 0.102844 TCAAGTTGCAGGCAAAGCAC 59.897 50.000 8.47 0.00 42.54 4.40
94 95 0.102844 GTCAAGTTGCAGGCAAAGCA 59.897 50.000 8.47 0.00 40.85 3.91
95 96 0.598419 GGTCAAGTTGCAGGCAAAGC 60.598 55.000 8.47 0.00 37.70 3.51
116 117 9.901172 ACTCTAGACACTTTTTCCTTTTCTTTA 57.099 29.630 0.00 0.00 0.00 1.85
125 126 9.356433 GTCTATACAACTCTAGACACTTTTTCC 57.644 37.037 5.15 0.00 42.17 3.13
144 146 0.661780 CAGGAGCGCGCAGTCTATAC 60.662 60.000 35.10 12.49 0.00 1.47
180 183 7.918033 TGCAGAAAGAAAATGACGAAAATAACA 59.082 29.630 0.00 0.00 0.00 2.41
188 191 4.214119 CCTCTTGCAGAAAGAAAATGACGA 59.786 41.667 0.00 0.00 44.38 4.20
190 193 5.456265 GTCCTCTTGCAGAAAGAAAATGAC 58.544 41.667 0.00 0.00 44.38 3.06
193 196 3.829026 GGGTCCTCTTGCAGAAAGAAAAT 59.171 43.478 0.00 0.00 44.38 1.82
205 208 2.738521 CGTGCGTGGGTCCTCTTG 60.739 66.667 0.00 0.00 0.00 3.02
261 270 1.476085 CTCCACTGGCACAAAAACACA 59.524 47.619 0.00 0.00 38.70 3.72
262 271 1.476488 ACTCCACTGGCACAAAAACAC 59.524 47.619 0.00 0.00 38.70 3.32
292 318 6.488006 CCATGGACAATTGGGTTAGATTAGAG 59.512 42.308 5.56 0.00 0.00 2.43
303 329 3.019564 GAGTCTTCCATGGACAATTGGG 58.980 50.000 15.91 0.63 36.29 4.12
346 372 5.884792 TGTTAAGTAGGAGTAGCTAGGTGTC 59.115 44.000 4.27 1.09 0.00 3.67
383 525 8.607713 TGGGGAATTCATACGTATACCAATAAT 58.392 33.333 7.96 0.00 0.00 1.28
393 535 4.282449 ACGATCATGGGGAATTCATACGTA 59.718 41.667 7.93 0.00 31.87 3.57
394 536 3.071023 ACGATCATGGGGAATTCATACGT 59.929 43.478 7.93 0.00 0.00 3.57
395 537 3.664107 ACGATCATGGGGAATTCATACG 58.336 45.455 7.93 4.10 0.00 3.06
663 825 6.273071 GTGCTATGGACTGAAAAACAAAGTT 58.727 36.000 0.00 0.00 0.00 2.66
783 946 4.732672 ACTTATGAAACGGAGGGAGTAC 57.267 45.455 0.00 0.00 0.00 2.73
788 951 4.828829 AGTACAACTTATGAAACGGAGGG 58.171 43.478 0.00 0.00 0.00 4.30
789 952 7.894376 TTTAGTACAACTTATGAAACGGAGG 57.106 36.000 0.00 0.00 0.00 4.30
790 953 9.146984 TGATTTAGTACAACTTATGAAACGGAG 57.853 33.333 0.00 0.00 0.00 4.63
791 954 9.146984 CTGATTTAGTACAACTTATGAAACGGA 57.853 33.333 0.00 0.00 0.00 4.69
792 955 8.388103 CCTGATTTAGTACAACTTATGAAACGG 58.612 37.037 0.00 0.00 0.00 4.44
793 956 8.388103 CCCTGATTTAGTACAACTTATGAAACG 58.612 37.037 0.00 0.00 0.00 3.60
794 957 9.444600 TCCCTGATTTAGTACAACTTATGAAAC 57.555 33.333 0.00 0.00 0.00 2.78
795 958 9.444600 GTCCCTGATTTAGTACAACTTATGAAA 57.555 33.333 0.00 0.00 0.00 2.69
796 959 7.762615 CGTCCCTGATTTAGTACAACTTATGAA 59.237 37.037 0.00 0.00 0.00 2.57
797 960 7.123098 TCGTCCCTGATTTAGTACAACTTATGA 59.877 37.037 0.00 0.00 0.00 2.15
798 961 7.262772 TCGTCCCTGATTTAGTACAACTTATG 58.737 38.462 0.00 0.00 0.00 1.90
799 962 7.414222 TCGTCCCTGATTTAGTACAACTTAT 57.586 36.000 0.00 0.00 0.00 1.73
800 963 6.839124 TCGTCCCTGATTTAGTACAACTTA 57.161 37.500 0.00 0.00 0.00 2.24
801 964 5.733620 TCGTCCCTGATTTAGTACAACTT 57.266 39.130 0.00 0.00 0.00 2.66
802 965 5.733620 TTCGTCCCTGATTTAGTACAACT 57.266 39.130 0.00 0.00 0.00 3.16
803 966 8.658499 ATTATTCGTCCCTGATTTAGTACAAC 57.342 34.615 0.00 0.00 0.00 3.32
811 974 8.780249 CCGTTTTATATTATTCGTCCCTGATTT 58.220 33.333 0.00 0.00 0.00 2.17
812 975 8.152246 TCCGTTTTATATTATTCGTCCCTGATT 58.848 33.333 0.00 0.00 0.00 2.57
813 976 7.673180 TCCGTTTTATATTATTCGTCCCTGAT 58.327 34.615 0.00 0.00 0.00 2.90
814 977 7.053316 TCCGTTTTATATTATTCGTCCCTGA 57.947 36.000 0.00 0.00 0.00 3.86
815 978 6.367969 CCTCCGTTTTATATTATTCGTCCCTG 59.632 42.308 0.00 0.00 0.00 4.45
816 979 6.461640 CCTCCGTTTTATATTATTCGTCCCT 58.538 40.000 0.00 0.00 0.00 4.20
817 980 5.640783 CCCTCCGTTTTATATTATTCGTCCC 59.359 44.000 0.00 0.00 0.00 4.46
818 981 6.458210 TCCCTCCGTTTTATATTATTCGTCC 58.542 40.000 0.00 0.00 0.00 4.79
819 982 7.150640 ACTCCCTCCGTTTTATATTATTCGTC 58.849 38.462 0.00 0.00 0.00 4.20
820 983 7.059202 ACTCCCTCCGTTTTATATTATTCGT 57.941 36.000 0.00 0.00 0.00 3.85
821 984 8.302438 AGTACTCCCTCCGTTTTATATTATTCG 58.698 37.037 0.00 0.00 0.00 3.34
822 985 9.420551 CAGTACTCCCTCCGTTTTATATTATTC 57.579 37.037 0.00 0.00 0.00 1.75
823 986 7.876582 GCAGTACTCCCTCCGTTTTATATTATT 59.123 37.037 0.00 0.00 0.00 1.40
824 987 7.234988 AGCAGTACTCCCTCCGTTTTATATTAT 59.765 37.037 0.00 0.00 0.00 1.28
825 988 6.552350 AGCAGTACTCCCTCCGTTTTATATTA 59.448 38.462 0.00 0.00 0.00 0.98
826 989 5.365895 AGCAGTACTCCCTCCGTTTTATATT 59.634 40.000 0.00 0.00 0.00 1.28
827 990 4.900054 AGCAGTACTCCCTCCGTTTTATAT 59.100 41.667 0.00 0.00 0.00 0.86
828 991 4.284178 AGCAGTACTCCCTCCGTTTTATA 58.716 43.478 0.00 0.00 0.00 0.98
829 992 3.105283 AGCAGTACTCCCTCCGTTTTAT 58.895 45.455 0.00 0.00 0.00 1.40
830 993 2.532843 AGCAGTACTCCCTCCGTTTTA 58.467 47.619 0.00 0.00 0.00 1.52
831 994 1.349067 AGCAGTACTCCCTCCGTTTT 58.651 50.000 0.00 0.00 0.00 2.43
832 995 1.349067 AAGCAGTACTCCCTCCGTTT 58.651 50.000 0.00 0.00 0.00 3.60
833 996 1.349067 AAAGCAGTACTCCCTCCGTT 58.651 50.000 0.00 0.00 0.00 4.44
834 997 2.226962 TAAAGCAGTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
835 998 4.931661 TTATAAAGCAGTACTCCCTCCG 57.068 45.455 0.00 0.00 0.00 4.63
836 999 7.068686 AGATTTATAAAGCAGTACTCCCTCC 57.931 40.000 15.37 0.00 0.00 4.30
837 1000 7.654116 GTGAGATTTATAAAGCAGTACTCCCTC 59.346 40.741 15.37 2.18 0.00 4.30
838 1001 7.345914 AGTGAGATTTATAAAGCAGTACTCCCT 59.654 37.037 15.37 0.00 0.00 4.20
839 1002 7.501844 AGTGAGATTTATAAAGCAGTACTCCC 58.498 38.462 15.37 0.00 0.00 4.30
840 1003 8.417884 AGAGTGAGATTTATAAAGCAGTACTCC 58.582 37.037 24.82 15.48 34.43 3.85
841 1004 9.810545 AAGAGTGAGATTTATAAAGCAGTACTC 57.189 33.333 23.00 23.00 34.28 2.59
842 1005 9.810545 GAAGAGTGAGATTTATAAAGCAGTACT 57.189 33.333 15.37 14.27 0.00 2.73
843 1006 9.587772 TGAAGAGTGAGATTTATAAAGCAGTAC 57.412 33.333 15.37 10.39 0.00 2.73
845 1008 9.507329 TTTGAAGAGTGAGATTTATAAAGCAGT 57.493 29.630 15.37 10.00 0.00 4.40
859 1022 4.741676 GGCACATTTGTTTTGAAGAGTGAG 59.258 41.667 0.00 0.00 0.00 3.51
861 1024 3.803778 GGGCACATTTGTTTTGAAGAGTG 59.196 43.478 0.00 0.00 0.00 3.51
884 1285 4.792521 TCTCTGTCTCCTTTAACTGCTC 57.207 45.455 0.00 0.00 0.00 4.26
943 1378 1.884464 GCGCGAGAATGATGCAGGA 60.884 57.895 12.10 0.00 0.00 3.86
965 1431 3.810743 GCGGCTCCATGGAATTTATACCT 60.811 47.826 17.00 0.00 0.00 3.08
1075 1589 3.365265 GCGGGCCAGGAAGTTGTG 61.365 66.667 4.39 0.00 0.00 3.33
1099 1613 0.034767 CTGTGTGGTCATGGGCTCAT 60.035 55.000 0.00 0.00 0.00 2.90
1100 1614 1.376086 CTGTGTGGTCATGGGCTCA 59.624 57.895 0.00 0.00 0.00 4.26
1101 1615 2.042831 GCTGTGTGGTCATGGGCTC 61.043 63.158 0.00 0.00 0.00 4.70
1102 1616 2.034687 GCTGTGTGGTCATGGGCT 59.965 61.111 0.00 0.00 0.00 5.19
1103 1617 1.462731 TTTGCTGTGTGGTCATGGGC 61.463 55.000 0.00 0.00 0.00 5.36
1104 1618 1.039068 TTTTGCTGTGTGGTCATGGG 58.961 50.000 0.00 0.00 0.00 4.00
1105 1619 1.269726 GGTTTTGCTGTGTGGTCATGG 60.270 52.381 0.00 0.00 0.00 3.66
1106 1620 1.408340 TGGTTTTGCTGTGTGGTCATG 59.592 47.619 0.00 0.00 0.00 3.07
1142 1662 2.699954 GAGTTCAGCGGGAATTCTTCA 58.300 47.619 5.23 0.00 38.73 3.02
1158 1681 3.394836 GGAGGAGGCAGGCGAGTT 61.395 66.667 0.00 0.00 0.00 3.01
1230 1784 2.338984 GTCGAACGGGAGCACAGT 59.661 61.111 0.00 0.00 0.00 3.55
1426 2007 2.958576 GGATTTCCGCCGCAAACA 59.041 55.556 0.00 0.00 0.00 2.83
1439 2020 2.202440 CGCGTCGAGTCACGGATT 60.202 61.111 14.17 0.00 40.29 3.01
1659 2258 0.967380 CCTGTTGTCATGGCCTTCCC 60.967 60.000 3.32 0.00 0.00 3.97
1673 2272 0.035458 CCTTCGACTTCCTGCCTGTT 59.965 55.000 0.00 0.00 0.00 3.16
1726 2336 2.619074 CCAAGGTCCTCAAGTTCCATCC 60.619 54.545 0.00 0.00 0.00 3.51
1733 2343 2.900546 CTCTGTACCAAGGTCCTCAAGT 59.099 50.000 0.00 0.00 0.00 3.16
1776 2386 3.589951 ATGAATTCATGGAGGAGGTGG 57.410 47.619 20.11 0.00 34.83 4.61
1941 2727 0.470766 AACCAAACCTACACAGCCGA 59.529 50.000 0.00 0.00 0.00 5.54
1950 2736 3.842007 TGAACTTCGGAACCAAACCTA 57.158 42.857 0.00 0.00 0.00 3.08
2022 4365 3.394606 TCTTCCCAAGCTTTAGGTGAACT 59.605 43.478 11.25 0.00 0.00 3.01
2023 4366 3.502595 GTCTTCCCAAGCTTTAGGTGAAC 59.497 47.826 11.25 5.48 0.00 3.18
2024 4367 3.137544 TGTCTTCCCAAGCTTTAGGTGAA 59.862 43.478 11.25 8.59 0.00 3.18
2055 4463 4.384547 GTCAACCATAAAATTCGTTGTGGC 59.615 41.667 5.76 0.00 42.01 5.01
2175 4641 9.574516 ACTTTTCTCCTATTGTTATTCTTGTGT 57.425 29.630 0.00 0.00 0.00 3.72
2199 4665 8.121185 AGTAGAAGGACCAAAAGTAGGTATACT 58.879 37.037 2.25 0.00 44.37 2.12
2214 4680 2.881111 AGGCCAAAAGTAGAAGGACC 57.119 50.000 5.01 0.00 0.00 4.46
2229 4695 2.888414 GTGACCAGATCTAGACTAGGCC 59.112 54.545 9.64 0.00 0.00 5.19
2232 4698 6.119536 AGTTGAGTGACCAGATCTAGACTAG 58.880 44.000 2.81 2.81 0.00 2.57
2237 4703 4.946772 TCAGAGTTGAGTGACCAGATCTAG 59.053 45.833 0.00 0.00 0.00 2.43
2243 4709 3.677121 CGATTTCAGAGTTGAGTGACCAG 59.323 47.826 0.00 0.00 34.15 4.00
2246 4712 3.675698 GTCCGATTTCAGAGTTGAGTGAC 59.324 47.826 0.00 0.00 34.15 3.67
2248 4714 3.653344 TGTCCGATTTCAGAGTTGAGTG 58.347 45.455 0.00 0.00 34.15 3.51
2249 4715 4.058817 GTTGTCCGATTTCAGAGTTGAGT 58.941 43.478 0.00 0.00 34.15 3.41
2250 4716 4.310769 AGTTGTCCGATTTCAGAGTTGAG 58.689 43.478 0.00 0.00 34.15 3.02
2251 4717 4.336889 AGTTGTCCGATTTCAGAGTTGA 57.663 40.909 0.00 0.00 0.00 3.18
2252 4718 4.511454 TGAAGTTGTCCGATTTCAGAGTTG 59.489 41.667 0.00 0.00 0.00 3.16
2254 4720 4.058817 GTGAAGTTGTCCGATTTCAGAGT 58.941 43.478 0.00 0.00 30.86 3.24
2257 4723 3.403038 AGGTGAAGTTGTCCGATTTCAG 58.597 45.455 0.00 0.00 30.86 3.02
2258 4724 3.181459 TGAGGTGAAGTTGTCCGATTTCA 60.181 43.478 0.00 0.00 0.00 2.69
2259 4725 3.399330 TGAGGTGAAGTTGTCCGATTTC 58.601 45.455 0.00 0.00 0.00 2.17
2260 4726 3.485463 TGAGGTGAAGTTGTCCGATTT 57.515 42.857 0.00 0.00 0.00 2.17
2265 4738 4.511826 CAGTAGTTTGAGGTGAAGTTGTCC 59.488 45.833 0.00 0.00 0.00 4.02
2277 4750 7.721286 ACTTGTCTGATTTCAGTAGTTTGAG 57.279 36.000 7.42 1.60 44.12 3.02
2279 4752 8.397906 TGAAACTTGTCTGATTTCAGTAGTTTG 58.602 33.333 24.90 11.29 42.89 2.93
2280 4753 8.506168 TGAAACTTGTCTGATTTCAGTAGTTT 57.494 30.769 22.62 22.62 43.93 2.66
2288 4761 4.158579 GGGGGATGAAACTTGTCTGATTTC 59.841 45.833 0.00 0.00 33.75 2.17
2292 4765 1.003118 CGGGGGATGAAACTTGTCTGA 59.997 52.381 0.00 0.00 0.00 3.27
2294 4767 1.003233 GTCGGGGGATGAAACTTGTCT 59.997 52.381 0.00 0.00 0.00 3.41
2311 4784 0.168788 TAAGTACCAGAACCGCGTCG 59.831 55.000 4.92 0.00 0.00 5.12
2314 4787 2.358939 AAGTAAGTACCAGAACCGCG 57.641 50.000 0.00 0.00 0.00 6.46
2329 4802 2.705127 ACGGTCAAAACTGGGGTAAGTA 59.295 45.455 0.00 0.00 35.97 2.24
2333 4806 0.535553 GCACGGTCAAAACTGGGGTA 60.536 55.000 0.00 0.00 35.55 3.69
2339 4812 1.134521 TGAGTCAGCACGGTCAAAACT 60.135 47.619 0.00 0.00 0.00 2.66
2345 4818 2.092211 CGTAAATTGAGTCAGCACGGTC 59.908 50.000 0.00 0.00 0.00 4.79
2348 4821 3.918591 AGTACGTAAATTGAGTCAGCACG 59.081 43.478 0.00 13.12 0.00 5.34
2396 4871 7.865706 AGATCTGAAAATAGTACGCCAATTT 57.134 32.000 0.00 0.00 0.00 1.82
2416 4891 7.569591 CGCGGATTTGAAAAAGATAGGTAGATC 60.570 40.741 0.00 0.00 0.00 2.75
2418 4893 5.522460 CGCGGATTTGAAAAAGATAGGTAGA 59.478 40.000 0.00 0.00 0.00 2.59
2419 4894 5.738370 CGCGGATTTGAAAAAGATAGGTAG 58.262 41.667 0.00 0.00 0.00 3.18
2420 4895 4.034742 GCGCGGATTTGAAAAAGATAGGTA 59.965 41.667 8.83 0.00 0.00 3.08
2423 4898 4.014847 TGCGCGGATTTGAAAAAGATAG 57.985 40.909 8.83 0.00 0.00 2.08
2432 4907 2.287849 TGAAAAACATGCGCGGATTTGA 60.288 40.909 11.57 0.00 0.00 2.69
2436 4911 2.430546 TTTGAAAAACATGCGCGGAT 57.569 40.000 7.52 7.52 0.00 4.18
2438 4913 1.389784 GGATTTGAAAAACATGCGCGG 59.610 47.619 8.83 0.00 0.00 6.46
2441 4933 5.406175 AGTTCATGGATTTGAAAAACATGCG 59.594 36.000 15.80 0.63 37.36 4.73
2477 4969 5.117584 GCATGGATTTCAAAATGGTATGCA 58.882 37.500 15.79 0.00 36.56 3.96
2478 4970 5.006941 GTGCATGGATTTCAAAATGGTATGC 59.993 40.000 14.75 14.75 36.79 3.14
2482 4974 4.895668 AGTGCATGGATTTCAAAATGGT 57.104 36.364 0.00 0.00 0.00 3.55
2484 4976 8.937884 TGAAAATAGTGCATGGATTTCAAAATG 58.062 29.630 10.23 0.00 34.80 2.32
2490 4982 6.633856 AGGTTGAAAATAGTGCATGGATTTC 58.366 36.000 4.58 4.58 0.00 2.17
2530 5022 8.112183 TGCCCCCAAAAATTATGTGAATTTTAT 58.888 29.630 8.08 0.00 38.47 1.40
2531 5023 7.461749 TGCCCCCAAAAATTATGTGAATTTTA 58.538 30.769 8.08 0.00 38.47 1.52
2532 5024 6.310149 TGCCCCCAAAAATTATGTGAATTTT 58.690 32.000 2.86 2.86 40.41 1.82
2544 5036 3.145286 CACGAAATTTGCCCCCAAAAAT 58.855 40.909 0.00 0.00 43.58 1.82
2549 5041 0.676736 GTTCACGAAATTTGCCCCCA 59.323 50.000 0.00 0.00 0.00 4.96
2550 5042 0.966179 AGTTCACGAAATTTGCCCCC 59.034 50.000 0.00 0.00 0.00 5.40
2552 5044 2.035321 TCCAAGTTCACGAAATTTGCCC 59.965 45.455 0.00 0.00 0.00 5.36
2555 5047 7.289587 ACTTTTTCCAAGTTCACGAAATTTG 57.710 32.000 0.00 0.00 0.00 2.32
2565 5057 4.275196 AGTTCGCCTACTTTTTCCAAGTTC 59.725 41.667 0.00 0.00 0.00 3.01
2569 5061 4.200874 TCAAGTTCGCCTACTTTTTCCAA 58.799 39.130 0.00 0.00 36.24 3.53
2592 5084 7.863877 ACATTTTTCTAAATCGGCGTACTTTTT 59.136 29.630 6.85 3.57 31.63 1.94
2593 5085 7.325097 CACATTTTTCTAAATCGGCGTACTTTT 59.675 33.333 6.85 6.00 31.63 2.27
2594 5086 6.799925 CACATTTTTCTAAATCGGCGTACTTT 59.200 34.615 6.85 8.31 31.63 2.66
2595 5087 6.311723 CACATTTTTCTAAATCGGCGTACTT 58.688 36.000 6.85 1.30 31.63 2.24
2596 5088 5.672819 GCACATTTTTCTAAATCGGCGTACT 60.673 40.000 6.85 0.00 31.63 2.73
2601 5093 6.090628 TCAAATGCACATTTTTCTAAATCGGC 59.909 34.615 5.88 0.00 38.84 5.54
2617 5109 8.173321 AGTTCGCTTATATTTTTCAAATGCAC 57.827 30.769 0.00 0.00 0.00 4.57
2619 5111 8.859156 TCAAGTTCGCTTATATTTTTCAAATGC 58.141 29.630 0.00 0.00 35.31 3.56
2669 5161 7.811713 TGCATGATCGTTTTTGAATTCATGTAA 59.188 29.630 9.40 0.00 41.42 2.41
2686 5179 6.033831 GTGTACTTTTTCCAAATGCATGATCG 59.966 38.462 0.00 0.00 0.00 3.69
2700 5193 6.576551 TTTTGCAAATCCGTGTACTTTTTC 57.423 33.333 13.65 0.00 0.00 2.29
2727 5220 3.305131 CCACGTACTTTGCTAGTCTGTGA 60.305 47.826 17.50 0.00 41.27 3.58
2728 5221 2.987149 CCACGTACTTTGCTAGTCTGTG 59.013 50.000 12.73 12.73 39.76 3.66
2729 5222 2.889045 TCCACGTACTTTGCTAGTCTGT 59.111 45.455 0.00 0.00 38.33 3.41
2730 5223 3.570926 TCCACGTACTTTGCTAGTCTG 57.429 47.619 0.00 0.00 38.33 3.51
2731 5224 4.803098 AATCCACGTACTTTGCTAGTCT 57.197 40.909 0.00 0.00 38.33 3.24
2732 5225 4.927425 TCAAATCCACGTACTTTGCTAGTC 59.073 41.667 10.26 0.00 38.33 2.59
2734 5227 5.856126 TTCAAATCCACGTACTTTGCTAG 57.144 39.130 10.26 0.00 31.50 3.42
2772 5265 9.104965 TCCGATTCGATTGATTAATACTTTTGT 57.895 29.630 7.83 0.00 0.00 2.83
2773 5266 9.586150 CTCCGATTCGATTGATTAATACTTTTG 57.414 33.333 7.83 0.00 0.00 2.44
2795 5546 2.557056 ACATACCACCATATCGACTCCG 59.443 50.000 0.00 0.00 37.07 4.63
2796 5547 4.521639 TGTACATACCACCATATCGACTCC 59.478 45.833 0.00 0.00 0.00 3.85
2827 5578 5.734855 ACTAATACGACATGCCAATCAAC 57.265 39.130 0.00 0.00 0.00 3.18
2910 5661 1.956477 CAAATAAATCGCCTGGGGAGG 59.044 52.381 18.77 0.00 0.00 4.30
2911 5662 1.338020 GCAAATAAATCGCCTGGGGAG 59.662 52.381 18.77 4.75 0.00 4.30
2912 5663 1.398692 GCAAATAAATCGCCTGGGGA 58.601 50.000 16.33 16.33 0.00 4.81
2913 5664 0.030638 CGCAAATAAATCGCCTGGGG 59.969 55.000 4.03 4.03 0.00 4.96
2914 5665 0.594796 GCGCAAATAAATCGCCTGGG 60.595 55.000 0.30 0.00 42.71 4.45
2915 5666 2.872028 GCGCAAATAAATCGCCTGG 58.128 52.632 0.30 0.00 42.71 4.45
2920 5671 1.199852 GCACCGGCGCAAATAAATCG 61.200 55.000 10.19 0.00 0.00 3.34
2921 5672 2.577225 GCACCGGCGCAAATAAATC 58.423 52.632 10.19 0.00 0.00 2.17
2922 5673 4.804496 GCACCGGCGCAAATAAAT 57.196 50.000 10.19 0.00 0.00 1.40
2943 5694 2.841160 GCACGACTGGGCCGTTTTT 61.841 57.895 0.00 0.00 38.29 1.94
2944 5695 3.284449 GCACGACTGGGCCGTTTT 61.284 61.111 0.00 0.00 38.29 2.43
2950 5701 4.767255 CTGAGGGCACGACTGGGC 62.767 72.222 0.00 0.00 0.00 5.36
2951 5702 4.087892 CCTGAGGGCACGACTGGG 62.088 72.222 0.00 0.00 0.00 4.45
2952 5703 2.362369 ATCCTGAGGGCACGACTGG 61.362 63.158 0.00 5.94 0.00 4.00
2953 5704 1.153489 CATCCTGAGGGCACGACTG 60.153 63.158 0.00 0.00 0.00 3.51
2954 5705 3.023949 GCATCCTGAGGGCACGACT 62.024 63.158 0.00 0.00 0.00 4.18
2955 5706 2.512515 GCATCCTGAGGGCACGAC 60.513 66.667 0.00 0.00 0.00 4.34
2956 5707 2.685017 AGCATCCTGAGGGCACGA 60.685 61.111 0.00 0.00 0.00 4.35
2957 5708 2.513204 CAGCATCCTGAGGGCACG 60.513 66.667 0.00 0.00 41.77 5.34
2958 5709 2.993008 TCAGCATCCTGAGGGCAC 59.007 61.111 0.00 0.00 42.98 5.01
2964 5715 1.382522 GGCGAAATTCAGCATCCTGA 58.617 50.000 10.73 0.00 46.03 3.86
2965 5716 0.028505 CGGCGAAATTCAGCATCCTG 59.971 55.000 0.00 0.00 40.54 3.86
2966 5717 1.097547 CCGGCGAAATTCAGCATCCT 61.098 55.000 9.30 0.00 34.54 3.24
2967 5718 1.356624 CCGGCGAAATTCAGCATCC 59.643 57.895 9.30 0.00 34.54 3.51
2968 5719 1.298638 GCCGGCGAAATTCAGCATC 60.299 57.895 12.58 0.00 34.54 3.91
2969 5720 1.718757 GAGCCGGCGAAATTCAGCAT 61.719 55.000 23.20 0.00 34.54 3.79
2970 5721 2.359850 AGCCGGCGAAATTCAGCA 60.360 55.556 23.20 0.00 34.54 4.41
2971 5722 2.405191 GAGCCGGCGAAATTCAGC 59.595 61.111 23.20 0.03 0.00 4.26
2972 5723 2.703409 CGAGCCGGCGAAATTCAG 59.297 61.111 23.20 5.50 0.00 3.02
2973 5724 2.817834 CCGAGCCGGCGAAATTCA 60.818 61.111 23.20 0.00 41.17 2.57
2984 5735 2.254350 GCAAAAACGGTCCGAGCC 59.746 61.111 20.51 0.00 0.00 4.70
2985 5736 2.127383 CGCAAAAACGGTCCGAGC 60.127 61.111 20.51 12.11 0.00 5.03
2986 5737 2.127383 GCGCAAAAACGGTCCGAG 60.127 61.111 20.51 3.27 0.00 4.63
2987 5738 3.652000 GGCGCAAAAACGGTCCGA 61.652 61.111 20.51 0.00 0.00 4.55
2988 5739 4.693525 GGGCGCAAAAACGGTCCG 62.694 66.667 10.83 10.48 0.00 4.79
2989 5740 4.693525 CGGGCGCAAAAACGGTCC 62.694 66.667 10.83 0.00 0.00 4.46
2990 5741 4.693525 CCGGGCGCAAAAACGGTC 62.694 66.667 10.83 0.00 41.34 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.