Multiple sequence alignment - TraesCS5B01G564000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G564000 chr5B 100.000 2576 0 0 1 2576 709560223 709562798 0.000000e+00 4758
1 TraesCS5B01G564000 chr5D 88.250 1651 121 32 750 2347 557006784 557005154 0.000000e+00 1906
2 TraesCS5B01G564000 chr5D 92.568 296 22 0 1 296 416434372 416434667 2.370000e-115 425
3 TraesCS5B01G564000 chr5D 91.525 295 25 0 1 295 477020945 477021239 8.580000e-110 407
4 TraesCS5B01G564000 chr5D 85.776 232 29 4 524 753 407011044 407011273 2.560000e-60 243
5 TraesCS5B01G564000 chr5D 78.319 226 48 1 2352 2576 37832263 37832038 7.430000e-31 145
6 TraesCS5B01G564000 chr4A 89.873 1491 76 22 914 2350 605651350 605649881 0.000000e+00 1847
7 TraesCS5B01G564000 chr2D 91.554 296 25 0 1 296 596975222 596975517 2.390000e-110 409
8 TraesCS5B01G564000 chr2D 92.527 281 21 0 16 296 548746231 548745951 1.110000e-108 403
9 TraesCS5B01G564000 chr2D 90.541 296 28 0 1 296 398456919 398457214 2.400000e-105 392
10 TraesCS5B01G564000 chr2D 79.181 562 78 29 992 1524 627628775 627629326 1.130000e-93 353
11 TraesCS5B01G564000 chr2D 87.442 215 23 3 297 510 293685194 293684983 7.120000e-61 244
12 TraesCS5B01G564000 chr2D 86.222 225 25 5 299 520 548745880 548745659 3.310000e-59 239
13 TraesCS5B01G564000 chr6B 90.878 296 27 0 1 296 514659665 514659960 5.160000e-107 398
14 TraesCS5B01G564000 chr6B 85.408 233 29 5 523 753 203276597 203276368 1.190000e-58 237
15 TraesCS5B01G564000 chr3B 90.541 296 28 0 1 296 149166813 149167108 2.400000e-105 392
16 TraesCS5B01G564000 chr6D 90.203 296 29 0 1 296 312686795 312687090 1.120000e-103 387
17 TraesCS5B01G564000 chr6D 89.865 296 29 1 1 296 60124505 60124799 1.870000e-101 379
18 TraesCS5B01G564000 chr6D 90.950 221 16 3 302 520 65107928 65107710 6.970000e-76 294
19 TraesCS5B01G564000 chr6D 86.344 227 29 2 2352 2576 8342277 8342051 1.980000e-61 246
20 TraesCS5B01G564000 chr6D 86.580 231 20 6 297 525 200488221 200488000 7.120000e-61 244
21 TraesCS5B01G564000 chr6D 79.111 225 45 1 2352 2576 19719522 19719300 1.230000e-33 154
22 TraesCS5B01G564000 chr6A 94.222 225 13 0 2352 2576 93499251 93499475 6.820000e-91 344
23 TraesCS5B01G564000 chr6A 84.746 236 23 7 298 529 250723356 250723582 9.280000e-55 224
24 TraesCS5B01G564000 chr6A 78.281 221 46 2 2352 2572 19737647 19737429 9.610000e-30 141
25 TraesCS5B01G564000 chr2A 78.929 560 79 31 992 1522 758273297 758272748 6.820000e-91 344
26 TraesCS5B01G564000 chr7D 93.103 232 15 1 2345 2576 553356085 553356315 3.180000e-89 339
27 TraesCS5B01G564000 chr7D 89.815 216 20 2 297 510 154094622 154094407 2.520000e-70 276
28 TraesCS5B01G564000 chr7D 84.848 231 34 1 524 754 465568157 465568386 5.540000e-57 231
29 TraesCS5B01G564000 chr7D 84.914 232 31 3 523 753 618373564 618373336 5.540000e-57 231
30 TraesCS5B01G564000 chr7D 84.783 230 33 2 524 752 4240108 4240336 1.990000e-56 230
31 TraesCS5B01G564000 chr1B 91.556 225 19 0 2352 2576 149617255 149617031 6.920000e-81 311
32 TraesCS5B01G564000 chr2B 90.830 229 21 0 2348 2576 771426288 771426060 8.950000e-80 307
33 TraesCS5B01G564000 chr2B 86.344 227 29 2 524 750 682165257 682165033 1.980000e-61 246
34 TraesCS5B01G564000 chr1A 88.596 228 21 3 2354 2576 463424213 463423986 3.270000e-69 272
35 TraesCS5B01G564000 chr3D 85.903 227 30 2 525 750 496064023 496063798 9.210000e-60 241
36 TraesCS5B01G564000 chr3D 84.914 232 29 5 297 525 141671116 141670888 1.990000e-56 230
37 TraesCS5B01G564000 chr3D 84.322 236 31 6 523 755 374581465 374581233 2.580000e-55 226
38 TraesCS5B01G564000 chr3A 85.590 229 27 5 300 525 437930466 437930241 4.290000e-58 235
39 TraesCS5B01G564000 chr3A 85.281 231 28 5 2348 2576 639426348 639426574 1.540000e-57 233
40 TraesCS5B01G564000 chr3A 85.398 226 21 8 299 521 682009448 682009232 9.280000e-55 224
41 TraesCS5B01G564000 chr1D 85.345 232 28 6 523 752 442793322 442793549 4.290000e-58 235
42 TraesCS5B01G564000 chr4B 84.848 231 33 2 2347 2576 623173577 623173348 5.540000e-57 231
43 TraesCS5B01G564000 chr7A 78.319 226 45 4 2352 2576 7419518 7419296 2.670000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G564000 chr5B 709560223 709562798 2575 False 4758 4758 100.0000 1 2576 1 chr5B.!!$F1 2575
1 TraesCS5B01G564000 chr5D 557005154 557006784 1630 True 1906 1906 88.2500 750 2347 1 chr5D.!!$R2 1597
2 TraesCS5B01G564000 chr4A 605649881 605651350 1469 True 1847 1847 89.8730 914 2350 1 chr4A.!!$R1 1436
3 TraesCS5B01G564000 chr2D 627628775 627629326 551 False 353 353 79.1810 992 1524 1 chr2D.!!$F3 532
4 TraesCS5B01G564000 chr2D 548745659 548746231 572 True 321 403 89.3745 16 520 2 chr2D.!!$R2 504
5 TraesCS5B01G564000 chr2A 758272748 758273297 549 True 344 344 78.9290 992 1522 1 chr2A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1045 0.026803 GCATGTCAATCTCGGTTCGC 59.973 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2448 2682 0.031585 TTGACGTGACCGAGAGTTGG 59.968 55.0 0.0 0.0 37.88 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.302431 TGATGGACCAACACGGCAG 60.302 57.895 0.00 0.00 39.03 4.85
92 93 2.557924 CAAGATCTCCTCCTCCTCATCG 59.442 54.545 0.00 0.00 0.00 3.84
105 106 0.661780 CTCATCGGACGAGGAATCGC 60.662 60.000 10.32 0.00 34.44 4.58
110 111 2.728817 GACGAGGAATCGCCGGAT 59.271 61.111 5.05 0.00 43.43 4.18
133 134 5.964887 TCGCAAAGGAAATTGTGAAAAAG 57.035 34.783 1.16 0.00 44.38 2.27
137 138 6.486248 GCAAAGGAAATTGTGAAAAAGGAAC 58.514 36.000 0.00 0.00 32.80 3.62
171 172 4.592778 AGTCCATTTTGTACCTTGGCAAAT 59.407 37.500 0.00 0.00 34.99 2.32
173 174 5.179182 GTCCATTTTGTACCTTGGCAAATTG 59.821 40.000 0.00 0.00 36.51 2.32
186 187 3.119316 TGGCAAATTGTCGAACAACTTGT 60.119 39.130 17.02 0.00 44.37 3.16
196 197 0.534203 AACAACTTGTGGGCGTCGAT 60.534 50.000 0.00 0.00 0.00 3.59
211 212 0.392060 TCGATGAAGGAGACGACCGA 60.392 55.000 0.00 0.00 34.73 4.69
213 214 0.809385 GATGAAGGAGACGACCGACA 59.191 55.000 0.00 0.00 34.73 4.35
244 245 2.759973 TGCCCTCGGACCAGCTAG 60.760 66.667 0.00 0.00 0.00 3.42
351 421 1.153168 GCGGCTTGCAGAAGGGATA 60.153 57.895 0.00 0.00 45.45 2.59
354 424 1.605710 CGGCTTGCAGAAGGGATATTG 59.394 52.381 0.00 0.00 0.00 1.90
355 425 1.339291 GGCTTGCAGAAGGGATATTGC 59.661 52.381 0.00 0.00 37.09 3.56
359 430 1.518903 GCAGAAGGGATATTGCGGCC 61.519 60.000 0.00 0.00 0.00 6.13
362 433 3.491598 AAGGGATATTGCGGCCCCG 62.492 63.158 1.59 1.59 43.08 5.73
392 463 0.744771 GAGTCACCGGAGAAATGGGC 60.745 60.000 9.46 0.00 0.00 5.36
393 464 2.106683 GTCACCGGAGAAATGGGCG 61.107 63.158 9.46 0.00 0.00 6.13
395 466 4.796495 ACCGGAGAAATGGGCGGC 62.796 66.667 9.46 0.00 0.00 6.53
396 467 4.794648 CCGGAGAAATGGGCGGCA 62.795 66.667 12.47 0.00 0.00 5.69
445 517 2.193536 GGCGAGGGCTTGTTGTTGT 61.194 57.895 0.00 0.00 39.81 3.32
448 520 1.539827 GCGAGGGCTTGTTGTTGTAAT 59.460 47.619 0.00 0.00 35.83 1.89
460 532 4.288366 TGTTGTTGTAATGGGAGAGGATGA 59.712 41.667 0.00 0.00 0.00 2.92
468 540 3.129262 TGGGAGAGGATGACCAATGTA 57.871 47.619 0.00 0.00 38.94 2.29
474 546 1.209504 AGGATGACCAATGTACCACCG 59.790 52.381 0.00 0.00 38.94 4.94
548 620 4.733725 ACCAGCGGGCTAGGGGAA 62.734 66.667 1.46 0.00 37.90 3.97
549 621 3.866582 CCAGCGGGCTAGGGGAAG 61.867 72.222 0.00 0.00 0.00 3.46
550 622 2.764128 CAGCGGGCTAGGGGAAGA 60.764 66.667 0.00 0.00 0.00 2.87
551 623 2.040606 AGCGGGCTAGGGGAAGAA 59.959 61.111 0.00 0.00 0.00 2.52
552 624 2.066999 AGCGGGCTAGGGGAAGAAG 61.067 63.158 0.00 0.00 0.00 2.85
553 625 2.368011 GCGGGCTAGGGGAAGAAGT 61.368 63.158 0.00 0.00 0.00 3.01
554 626 1.047034 GCGGGCTAGGGGAAGAAGTA 61.047 60.000 0.00 0.00 0.00 2.24
555 627 1.041437 CGGGCTAGGGGAAGAAGTAG 58.959 60.000 0.00 0.00 0.00 2.57
556 628 1.425694 GGGCTAGGGGAAGAAGTAGG 58.574 60.000 0.00 0.00 0.00 3.18
557 629 1.344189 GGGCTAGGGGAAGAAGTAGGT 60.344 57.143 0.00 0.00 0.00 3.08
558 630 1.763545 GGCTAGGGGAAGAAGTAGGTG 59.236 57.143 0.00 0.00 0.00 4.00
559 631 1.763545 GCTAGGGGAAGAAGTAGGTGG 59.236 57.143 0.00 0.00 0.00 4.61
560 632 2.399580 CTAGGGGAAGAAGTAGGTGGG 58.600 57.143 0.00 0.00 0.00 4.61
561 633 0.914902 AGGGGAAGAAGTAGGTGGGC 60.915 60.000 0.00 0.00 0.00 5.36
562 634 1.221021 GGGAAGAAGTAGGTGGGCG 59.779 63.158 0.00 0.00 0.00 6.13
563 635 1.449778 GGAAGAAGTAGGTGGGCGC 60.450 63.158 0.00 0.00 0.00 6.53
564 636 1.810030 GAAGAAGTAGGTGGGCGCG 60.810 63.158 0.00 0.00 0.00 6.86
565 637 3.952628 AAGAAGTAGGTGGGCGCGC 62.953 63.158 25.94 25.94 0.00 6.86
581 653 4.489795 GCGCGCATCTGTCACGTG 62.490 66.667 29.10 9.94 40.12 4.49
582 654 3.105782 CGCGCATCTGTCACGTGT 61.106 61.111 16.51 0.00 32.93 4.49
583 655 2.772189 GCGCATCTGTCACGTGTC 59.228 61.111 16.51 10.98 0.00 3.67
584 656 1.734477 GCGCATCTGTCACGTGTCT 60.734 57.895 16.51 0.00 0.00 3.41
585 657 1.949015 GCGCATCTGTCACGTGTCTG 61.949 60.000 16.51 14.04 0.00 3.51
586 658 1.347097 CGCATCTGTCACGTGTCTGG 61.347 60.000 16.51 7.61 0.00 3.86
587 659 1.016130 GCATCTGTCACGTGTCTGGG 61.016 60.000 16.51 10.76 0.00 4.45
588 660 1.016130 CATCTGTCACGTGTCTGGGC 61.016 60.000 16.51 0.00 0.00 5.36
589 661 1.188219 ATCTGTCACGTGTCTGGGCT 61.188 55.000 16.51 0.72 0.00 5.19
590 662 1.665916 CTGTCACGTGTCTGGGCTG 60.666 63.158 16.51 0.00 0.00 4.85
591 663 2.087462 CTGTCACGTGTCTGGGCTGA 62.087 60.000 16.51 0.00 0.00 4.26
592 664 1.664965 GTCACGTGTCTGGGCTGAC 60.665 63.158 16.51 0.00 37.47 3.51
593 665 2.734723 CACGTGTCTGGGCTGACG 60.735 66.667 7.58 0.00 39.64 4.35
594 666 4.664677 ACGTGTCTGGGCTGACGC 62.665 66.667 12.30 12.30 42.20 5.19
595 667 4.662961 CGTGTCTGGGCTGACGCA 62.663 66.667 18.78 0.00 44.86 5.24
596 668 2.280797 GTGTCTGGGCTGACGCAA 60.281 61.111 15.72 0.00 44.25 4.85
597 669 1.891919 GTGTCTGGGCTGACGCAAA 60.892 57.895 15.72 0.00 44.25 3.68
598 670 1.073025 TGTCTGGGCTGACGCAAAT 59.927 52.632 6.68 0.00 39.64 2.32
599 671 0.955428 TGTCTGGGCTGACGCAAATC 60.955 55.000 6.68 0.00 39.64 2.17
600 672 1.377202 TCTGGGCTGACGCAAATCC 60.377 57.895 0.00 0.00 38.41 3.01
601 673 2.745884 TGGGCTGACGCAAATCCG 60.746 61.111 0.00 0.00 38.10 4.18
602 674 3.508840 GGGCTGACGCAAATCCGG 61.509 66.667 0.00 0.00 38.10 5.14
603 675 4.179579 GGCTGACGCAAATCCGGC 62.180 66.667 0.00 0.00 38.10 6.13
604 676 3.127533 GCTGACGCAAATCCGGCT 61.128 61.111 0.00 0.00 37.10 5.52
605 677 1.813753 GCTGACGCAAATCCGGCTA 60.814 57.895 0.00 0.00 37.10 3.93
606 678 1.366111 GCTGACGCAAATCCGGCTAA 61.366 55.000 0.00 0.00 37.10 3.09
607 679 1.083489 CTGACGCAAATCCGGCTAAA 58.917 50.000 0.00 0.00 37.10 1.85
608 680 1.466950 CTGACGCAAATCCGGCTAAAA 59.533 47.619 0.00 0.00 37.10 1.52
609 681 1.880675 TGACGCAAATCCGGCTAAAAA 59.119 42.857 0.00 0.00 37.10 1.94
625 697 2.614134 AAAAATGGACCGGGAATGGA 57.386 45.000 6.32 0.00 0.00 3.41
626 698 2.846665 AAAATGGACCGGGAATGGAT 57.153 45.000 6.32 0.00 0.00 3.41
627 699 2.364972 AAATGGACCGGGAATGGATC 57.635 50.000 6.32 0.00 0.00 3.36
628 700 0.108585 AATGGACCGGGAATGGATCG 59.891 55.000 6.32 0.00 0.00 3.69
630 702 2.280865 GACCGGGAATGGATCGGC 60.281 66.667 6.32 0.00 46.87 5.54
631 703 3.087253 ACCGGGAATGGATCGGCA 61.087 61.111 6.32 0.00 46.87 5.69
632 704 2.281070 CCGGGAATGGATCGGCAG 60.281 66.667 0.00 0.00 37.25 4.85
633 705 2.281070 CGGGAATGGATCGGCAGG 60.281 66.667 0.00 0.00 0.00 4.85
634 706 2.807107 CGGGAATGGATCGGCAGGA 61.807 63.158 0.00 0.00 0.00 3.86
635 707 1.763770 GGGAATGGATCGGCAGGAT 59.236 57.895 0.00 0.00 38.35 3.24
636 708 0.607489 GGGAATGGATCGGCAGGATG 60.607 60.000 0.00 0.00 34.82 3.51
637 709 0.397941 GGAATGGATCGGCAGGATGA 59.602 55.000 0.00 0.00 39.69 2.92
638 710 1.517242 GAATGGATCGGCAGGATGAC 58.483 55.000 0.00 0.00 44.64 3.06
646 718 1.425428 GGCAGGATGACGAAAAGCG 59.575 57.895 0.00 0.00 39.69 4.68
647 719 1.425428 GCAGGATGACGAAAAGCGG 59.575 57.895 0.00 0.00 39.69 5.52
648 720 1.019278 GCAGGATGACGAAAAGCGGA 61.019 55.000 0.00 0.00 39.69 5.54
649 721 0.721718 CAGGATGACGAAAAGCGGAC 59.278 55.000 0.00 0.00 46.49 4.79
650 722 0.736325 AGGATGACGAAAAGCGGACG 60.736 55.000 0.00 0.00 46.49 4.79
651 723 1.058903 GATGACGAAAAGCGGACGC 59.941 57.895 8.91 8.91 46.49 5.19
663 735 4.712873 GGACGCGCGTTCGTTTGG 62.713 66.667 38.03 3.89 43.42 3.28
664 736 3.694394 GACGCGCGTTCGTTTGGA 61.694 61.111 38.03 0.00 43.42 3.53
665 737 3.007070 GACGCGCGTTCGTTTGGAT 62.007 57.895 38.03 9.86 43.42 3.41
666 738 2.275812 CGCGCGTTCGTTTGGATC 60.276 61.111 24.19 0.00 38.14 3.36
667 739 2.275812 GCGCGTTCGTTTGGATCG 60.276 61.111 8.43 0.00 40.10 3.69
668 740 2.394136 CGCGTTCGTTTGGATCGG 59.606 61.111 0.00 0.00 38.11 4.18
669 741 2.097728 GCGTTCGTTTGGATCGGC 59.902 61.111 0.00 0.00 38.11 5.54
670 742 2.394136 CGTTCGTTTGGATCGGCG 59.606 61.111 0.00 0.00 34.88 6.46
671 743 2.097728 GTTCGTTTGGATCGGCGC 59.902 61.111 0.00 0.00 0.00 6.53
672 744 3.483665 TTCGTTTGGATCGGCGCG 61.484 61.111 0.00 0.00 0.00 6.86
673 745 4.728102 TCGTTTGGATCGGCGCGT 62.728 61.111 8.43 0.00 0.00 6.01
674 746 3.784412 CGTTTGGATCGGCGCGTT 61.784 61.111 8.43 0.00 0.00 4.84
675 747 2.202298 GTTTGGATCGGCGCGTTG 60.202 61.111 8.43 0.00 0.00 4.10
676 748 3.427425 TTTGGATCGGCGCGTTGG 61.427 61.111 8.43 0.00 0.00 3.77
685 757 3.660111 GCGCGTTGGGCTGACTTT 61.660 61.111 8.43 0.00 40.44 2.66
686 758 3.030652 CGCGTTGGGCTGACTTTT 58.969 55.556 0.00 0.00 40.44 2.27
687 759 1.082104 CGCGTTGGGCTGACTTTTC 60.082 57.895 0.00 0.00 40.44 2.29
688 760 1.507141 CGCGTTGGGCTGACTTTTCT 61.507 55.000 0.00 0.00 40.44 2.52
689 761 0.040067 GCGTTGGGCTGACTTTTCTG 60.040 55.000 0.00 0.00 39.11 3.02
690 762 1.308998 CGTTGGGCTGACTTTTCTGT 58.691 50.000 0.00 0.00 0.00 3.41
691 763 1.264288 CGTTGGGCTGACTTTTCTGTC 59.736 52.381 0.00 0.00 37.47 3.51
692 764 1.609072 GTTGGGCTGACTTTTCTGTCC 59.391 52.381 0.00 0.00 43.97 4.02
693 765 0.250295 TGGGCTGACTTTTCTGTCCG 60.250 55.000 0.00 0.00 46.08 4.79
694 766 1.578206 GGGCTGACTTTTCTGTCCGC 61.578 60.000 0.00 0.00 43.32 5.54
695 767 1.493311 GCTGACTTTTCTGTCCGCG 59.507 57.895 0.00 0.00 37.42 6.46
696 768 1.493311 CTGACTTTTCTGTCCGCGC 59.507 57.895 0.00 0.00 36.21 6.86
697 769 1.901650 CTGACTTTTCTGTCCGCGCC 61.902 60.000 0.00 0.00 36.21 6.53
698 770 3.011760 GACTTTTCTGTCCGCGCCG 62.012 63.158 0.00 0.00 0.00 6.46
699 771 2.736995 CTTTTCTGTCCGCGCCGA 60.737 61.111 0.00 0.00 0.00 5.54
700 772 2.047655 TTTTCTGTCCGCGCCGAT 60.048 55.556 0.00 0.00 0.00 4.18
701 773 2.025359 CTTTTCTGTCCGCGCCGATC 62.025 60.000 0.00 0.00 0.00 3.69
702 774 4.508128 TTCTGTCCGCGCCGATCC 62.508 66.667 0.00 0.00 0.00 3.36
704 776 4.812476 CTGTCCGCGCCGATCCAA 62.812 66.667 0.00 0.00 0.00 3.53
705 777 4.380781 TGTCCGCGCCGATCCAAA 62.381 61.111 0.00 0.00 0.00 3.28
706 778 3.861263 GTCCGCGCCGATCCAAAC 61.861 66.667 0.00 0.00 0.00 2.93
714 786 4.204891 CGATCCAAACGGACGCGC 62.205 66.667 5.73 0.00 34.62 6.86
715 787 4.204891 GATCCAAACGGACGCGCG 62.205 66.667 30.96 30.96 34.62 6.86
727 799 4.868900 CGCGCGCGGAAGAAATGG 62.869 66.667 43.28 13.53 35.56 3.16
728 800 4.536687 GCGCGCGGAAGAAATGGG 62.537 66.667 33.06 0.00 0.00 4.00
729 801 3.124921 CGCGCGGAAGAAATGGGT 61.125 61.111 24.84 0.00 0.00 4.51
730 802 2.686816 CGCGCGGAAGAAATGGGTT 61.687 57.895 24.84 0.00 0.00 4.11
731 803 1.154035 GCGCGGAAGAAATGGGTTG 60.154 57.895 8.83 0.00 0.00 3.77
732 804 1.154035 CGCGGAAGAAATGGGTTGC 60.154 57.895 0.00 0.00 0.00 4.17
733 805 1.215382 GCGGAAGAAATGGGTTGCC 59.785 57.895 0.00 0.00 0.00 4.52
734 806 1.506262 CGGAAGAAATGGGTTGCCG 59.494 57.895 0.00 0.00 0.00 5.69
735 807 1.215382 GGAAGAAATGGGTTGCCGC 59.785 57.895 0.00 0.00 0.00 6.53
736 808 1.154035 GAAGAAATGGGTTGCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
737 809 1.862602 GAAGAAATGGGTTGCCGCGT 61.863 55.000 4.92 0.00 0.00 6.01
738 810 1.460273 AAGAAATGGGTTGCCGCGTT 61.460 50.000 4.92 0.00 34.50 4.84
739 811 1.732683 GAAATGGGTTGCCGCGTTG 60.733 57.895 4.92 0.00 33.46 4.10
740 812 3.219645 AAATGGGTTGCCGCGTTGG 62.220 57.895 4.92 0.00 42.50 3.77
741 813 4.652131 ATGGGTTGCCGCGTTGGA 62.652 61.111 4.92 0.00 42.00 3.53
744 816 3.284449 GGTTGCCGCGTTGGAGTT 61.284 61.111 4.92 0.00 42.00 3.01
745 817 2.051345 GTTGCCGCGTTGGAGTTG 60.051 61.111 4.92 0.00 42.00 3.16
746 818 3.959975 TTGCCGCGTTGGAGTTGC 61.960 61.111 4.92 0.00 42.00 4.17
747 819 4.927782 TGCCGCGTTGGAGTTGCT 62.928 61.111 4.92 0.00 42.00 3.91
748 820 4.090057 GCCGCGTTGGAGTTGCTC 62.090 66.667 4.92 0.00 42.00 4.26
768 840 7.463961 TGCTCTTAGCTACTAGTACAAAACT 57.536 36.000 0.00 0.00 42.97 2.66
814 887 6.187682 CCCCTATTTTTACTCTTCACCACAT 58.812 40.000 0.00 0.00 0.00 3.21
816 889 7.499232 CCCCTATTTTTACTCTTCACCACATAG 59.501 40.741 0.00 0.00 0.00 2.23
854 927 2.835580 AGCAAGGATGGATCGATCTG 57.164 50.000 23.96 14.37 0.00 2.90
909 982 1.550524 ACATGCACCACATACTCGTCT 59.449 47.619 0.00 0.00 36.64 4.18
972 1045 0.026803 GCATGTCAATCTCGGTTCGC 59.973 55.000 0.00 0.00 0.00 4.70
996 1085 1.816537 GCGTCTCATCAGGTAGCCA 59.183 57.895 0.00 0.00 0.00 4.75
1065 1160 3.578272 TCGCGCGCCACAAACTTT 61.578 55.556 27.95 0.00 0.00 2.66
1179 1310 0.529378 ACATCGTCCGTAAGACCCAC 59.471 55.000 0.00 0.00 43.08 4.61
1184 1315 1.914764 TCCGTAAGACCCACCCACC 60.915 63.158 0.00 0.00 43.02 4.61
1185 1316 2.263540 CGTAAGACCCACCCACCG 59.736 66.667 0.00 0.00 43.02 4.94
1186 1317 2.576832 CGTAAGACCCACCCACCGT 61.577 63.158 0.00 0.00 43.02 4.83
1187 1318 1.294459 GTAAGACCCACCCACCGTC 59.706 63.158 0.00 0.00 0.00 4.79
1188 1319 2.277591 TAAGACCCACCCACCGTCG 61.278 63.158 0.00 0.00 0.00 5.12
1189 1320 4.928140 AGACCCACCCACCGTCGT 62.928 66.667 0.00 0.00 0.00 4.34
1190 1321 3.932483 GACCCACCCACCGTCGTT 61.932 66.667 0.00 0.00 0.00 3.85
1192 1323 3.931247 CCCACCCACCGTCGTTGA 61.931 66.667 0.00 0.00 0.00 3.18
1195 1326 1.292223 CACCCACCGTCGTTGATCT 59.708 57.895 0.00 0.00 0.00 2.75
1196 1327 0.528924 CACCCACCGTCGTTGATCTA 59.471 55.000 0.00 0.00 0.00 1.98
1197 1328 0.529378 ACCCACCGTCGTTGATCTAC 59.471 55.000 0.00 0.00 0.00 2.59
1198 1329 0.179119 CCCACCGTCGTTGATCTACC 60.179 60.000 1.57 0.00 0.00 3.18
1201 1332 0.449388 ACCGTCGTTGATCTACCGAC 59.551 55.000 16.95 16.95 45.49 4.79
1207 1338 4.028852 TCGTTGATCTACCGACATCTTG 57.971 45.455 1.57 0.00 0.00 3.02
1209 1340 3.428999 CGTTGATCTACCGACATCTTGGT 60.429 47.826 1.57 0.00 42.34 3.67
1247 1404 0.806102 GTATGTGGCGTGATCGTGCT 60.806 55.000 8.64 0.00 39.49 4.40
1360 1517 0.953960 CTCCAACAGCGGTAACACCC 60.954 60.000 0.00 0.00 33.75 4.61
1452 1609 1.356124 AGCTGGTCATCAAGGTCACT 58.644 50.000 0.00 0.00 0.00 3.41
1531 1697 4.114997 CCGGCGCCATTGTTGTCC 62.115 66.667 28.98 0.00 0.00 4.02
1539 1705 1.843368 CCATTGTTGTCCTGATGGCT 58.157 50.000 0.00 0.00 33.34 4.75
1566 1732 3.370840 TGGCCTCTTCTTGTTATGCAT 57.629 42.857 3.32 3.79 0.00 3.96
1661 1833 4.098044 TCCATGTATTCTCGGTTCTCAGTC 59.902 45.833 0.00 0.00 0.00 3.51
1668 1840 2.052157 CTCGGTTCTCAGTCGTTCAAC 58.948 52.381 0.00 0.00 0.00 3.18
1676 1848 6.867293 GGTTCTCAGTCGTTCAACTTAGTTAT 59.133 38.462 0.00 0.00 0.00 1.89
1686 1858 8.742777 TCGTTCAACTTAGTTATAGTACCATGT 58.257 33.333 0.00 0.00 0.00 3.21
1741 1913 4.726416 AGTGCAACATTTTGAGAATAGCG 58.274 39.130 0.00 0.00 41.43 4.26
1744 1916 4.142622 TGCAACATTTTGAGAATAGCGGAG 60.143 41.667 0.00 0.00 34.24 4.63
2065 2253 0.900182 GGTGCCCCTTTTTCCTCCAG 60.900 60.000 0.00 0.00 0.00 3.86
2077 2265 1.305633 CCTCCAGTGCTCCTCTCCA 60.306 63.158 0.00 0.00 0.00 3.86
2153 2341 0.257039 GAGGAAGATGGTGCCATGGT 59.743 55.000 14.67 0.00 36.70 3.55
2160 2348 0.975887 ATGGTGCCATGGTGGAAAAC 59.024 50.000 14.67 2.74 40.96 2.43
2190 2383 2.548057 TGTCATCCGACTCAAACTTTGC 59.452 45.455 0.00 0.00 43.06 3.68
2227 2459 4.228824 GGAGGTGTGGTATATTGTAGGGA 58.771 47.826 0.00 0.00 0.00 4.20
2266 2500 4.280677 CCTTAGAACTCAAAATGCCACCAA 59.719 41.667 0.00 0.00 0.00 3.67
2273 2507 2.627699 TCAAAATGCCACCAACTCTTCC 59.372 45.455 0.00 0.00 0.00 3.46
2338 2572 9.717942 GATTAGCATGTTGAGATATACTTCCTT 57.282 33.333 0.00 0.00 0.00 3.36
2347 2581 4.664392 AGATATACTTCCTTCGTCCCGAT 58.336 43.478 0.00 0.00 35.23 4.18
2350 2584 2.381725 ACTTCCTTCGTCCCGATTTC 57.618 50.000 0.00 0.00 35.23 2.17
2351 2585 1.900486 ACTTCCTTCGTCCCGATTTCT 59.100 47.619 0.00 0.00 35.23 2.52
2352 2586 2.302157 ACTTCCTTCGTCCCGATTTCTT 59.698 45.455 0.00 0.00 35.23 2.52
2353 2587 3.244457 ACTTCCTTCGTCCCGATTTCTTT 60.244 43.478 0.00 0.00 35.23 2.52
2354 2588 3.412237 TCCTTCGTCCCGATTTCTTTT 57.588 42.857 0.00 0.00 35.23 2.27
2355 2589 3.746940 TCCTTCGTCCCGATTTCTTTTT 58.253 40.909 0.00 0.00 35.23 1.94
2356 2590 3.500680 TCCTTCGTCCCGATTTCTTTTTG 59.499 43.478 0.00 0.00 35.23 2.44
2357 2591 2.981400 TCGTCCCGATTTCTTTTTGC 57.019 45.000 0.00 0.00 0.00 3.68
2358 2592 1.195900 TCGTCCCGATTTCTTTTTGCG 59.804 47.619 0.00 0.00 0.00 4.85
2359 2593 1.727857 CGTCCCGATTTCTTTTTGCGG 60.728 52.381 0.00 0.00 41.53 5.69
2361 2595 3.416955 CCGATTTCTTTTTGCGGGG 57.583 52.632 0.00 0.00 38.40 5.73
2362 2596 0.108851 CCGATTTCTTTTTGCGGGGG 60.109 55.000 0.00 0.00 38.40 5.40
2363 2597 0.885196 CGATTTCTTTTTGCGGGGGA 59.115 50.000 0.00 0.00 0.00 4.81
2364 2598 1.271102 CGATTTCTTTTTGCGGGGGAA 59.729 47.619 0.00 0.00 0.00 3.97
2365 2599 2.288518 CGATTTCTTTTTGCGGGGGAAA 60.289 45.455 0.00 0.00 0.00 3.13
2366 2600 2.605837 TTTCTTTTTGCGGGGGAAAC 57.394 45.000 0.00 0.00 0.00 2.78
2367 2601 1.783071 TTCTTTTTGCGGGGGAAACT 58.217 45.000 0.00 0.00 0.00 2.66
2368 2602 1.783071 TCTTTTTGCGGGGGAAACTT 58.217 45.000 0.00 0.00 0.00 2.66
2369 2603 1.410882 TCTTTTTGCGGGGGAAACTTG 59.589 47.619 0.00 0.00 0.00 3.16
2370 2604 1.410882 CTTTTTGCGGGGGAAACTTGA 59.589 47.619 0.00 0.00 0.00 3.02
2371 2605 1.036707 TTTTGCGGGGGAAACTTGAG 58.963 50.000 0.00 0.00 0.00 3.02
2372 2606 0.183971 TTTGCGGGGGAAACTTGAGA 59.816 50.000 0.00 0.00 0.00 3.27
2373 2607 0.250727 TTGCGGGGGAAACTTGAGAG 60.251 55.000 0.00 0.00 0.00 3.20
2374 2608 2.041115 GCGGGGGAAACTTGAGAGC 61.041 63.158 0.00 0.00 0.00 4.09
2375 2609 1.679898 CGGGGGAAACTTGAGAGCT 59.320 57.895 0.00 0.00 0.00 4.09
2376 2610 0.036875 CGGGGGAAACTTGAGAGCTT 59.963 55.000 0.00 0.00 0.00 3.74
2377 2611 1.545651 CGGGGGAAACTTGAGAGCTTT 60.546 52.381 0.00 0.00 0.00 3.51
2378 2612 2.290071 CGGGGGAAACTTGAGAGCTTTA 60.290 50.000 0.00 0.00 0.00 1.85
2379 2613 3.622455 CGGGGGAAACTTGAGAGCTTTAT 60.622 47.826 0.00 0.00 0.00 1.40
2380 2614 4.344978 GGGGGAAACTTGAGAGCTTTATT 58.655 43.478 0.00 0.00 0.00 1.40
2381 2615 5.506708 GGGGGAAACTTGAGAGCTTTATTA 58.493 41.667 0.00 0.00 0.00 0.98
2382 2616 5.949952 GGGGGAAACTTGAGAGCTTTATTAA 59.050 40.000 0.00 0.00 0.00 1.40
2383 2617 6.095580 GGGGGAAACTTGAGAGCTTTATTAAG 59.904 42.308 0.00 0.00 34.36 1.85
2384 2618 6.659668 GGGGAAACTTGAGAGCTTTATTAAGT 59.340 38.462 0.00 0.00 33.74 2.24
2385 2619 7.827729 GGGGAAACTTGAGAGCTTTATTAAGTA 59.172 37.037 5.51 0.00 33.74 2.24
2386 2620 9.227777 GGGAAACTTGAGAGCTTTATTAAGTAA 57.772 33.333 5.51 0.00 33.74 2.24
2410 2644 3.189618 CATTCTCTATGCAGTCAGCCA 57.810 47.619 0.00 0.00 44.83 4.75
2411 2645 3.538591 CATTCTCTATGCAGTCAGCCAA 58.461 45.455 0.00 0.00 44.83 4.52
2412 2646 3.701205 TTCTCTATGCAGTCAGCCAAA 57.299 42.857 0.00 0.00 44.83 3.28
2413 2647 3.701205 TCTCTATGCAGTCAGCCAAAA 57.299 42.857 0.00 0.00 44.83 2.44
2414 2648 3.603532 TCTCTATGCAGTCAGCCAAAAG 58.396 45.455 0.00 0.00 44.83 2.27
2415 2649 2.681848 CTCTATGCAGTCAGCCAAAAGG 59.318 50.000 0.00 0.00 44.83 3.11
2416 2650 1.133790 CTATGCAGTCAGCCAAAAGGC 59.866 52.381 0.00 0.00 44.83 4.35
2423 2657 4.858994 AGCCAAAAGGCTGCTGAT 57.141 50.000 8.44 0.00 44.22 2.90
2424 2658 2.576298 AGCCAAAAGGCTGCTGATC 58.424 52.632 8.44 0.00 44.22 2.92
2425 2659 0.251474 AGCCAAAAGGCTGCTGATCA 60.251 50.000 8.44 0.00 44.22 2.92
2426 2660 0.604578 GCCAAAAGGCTGCTGATCAA 59.395 50.000 0.00 0.00 0.00 2.57
2427 2661 1.403780 GCCAAAAGGCTGCTGATCAAG 60.404 52.381 0.00 0.00 0.00 3.02
2428 2662 2.165167 CCAAAAGGCTGCTGATCAAGA 58.835 47.619 0.00 0.00 0.00 3.02
2429 2663 2.559668 CCAAAAGGCTGCTGATCAAGAA 59.440 45.455 0.00 0.00 0.00 2.52
2430 2664 3.367087 CCAAAAGGCTGCTGATCAAGAAG 60.367 47.826 0.00 0.00 34.10 2.85
2436 2670 3.815856 CTGCTGATCAAGAAGCTAGGA 57.184 47.619 0.00 0.00 40.21 2.94
2437 2671 3.719924 CTGCTGATCAAGAAGCTAGGAG 58.280 50.000 0.00 0.00 40.21 3.69
2438 2672 3.102972 TGCTGATCAAGAAGCTAGGAGT 58.897 45.455 0.00 0.00 40.21 3.85
2439 2673 4.281657 TGCTGATCAAGAAGCTAGGAGTA 58.718 43.478 0.00 0.00 40.21 2.59
2440 2674 4.098654 TGCTGATCAAGAAGCTAGGAGTAC 59.901 45.833 0.00 0.00 40.21 2.73
2441 2675 4.340950 GCTGATCAAGAAGCTAGGAGTACT 59.659 45.833 0.00 0.00 36.47 2.73
2442 2676 5.735922 GCTGATCAAGAAGCTAGGAGTACTG 60.736 48.000 0.00 0.00 36.47 2.74
2443 2677 5.265191 TGATCAAGAAGCTAGGAGTACTGT 58.735 41.667 0.00 0.00 0.00 3.55
2444 2678 5.358442 TGATCAAGAAGCTAGGAGTACTGTC 59.642 44.000 0.00 0.00 0.00 3.51
2445 2679 4.924625 TCAAGAAGCTAGGAGTACTGTCT 58.075 43.478 0.00 0.00 0.00 3.41
2446 2680 6.063496 TCAAGAAGCTAGGAGTACTGTCTA 57.937 41.667 0.00 1.15 0.00 2.59
2447 2681 6.116806 TCAAGAAGCTAGGAGTACTGTCTAG 58.883 44.000 18.56 18.56 35.02 2.43
2450 2684 2.933573 GCTAGGAGTACTGTCTAGCCA 58.066 52.381 27.90 6.06 45.98 4.75
2451 2685 3.288964 GCTAGGAGTACTGTCTAGCCAA 58.711 50.000 27.90 3.96 45.98 4.52
2452 2686 3.067040 GCTAGGAGTACTGTCTAGCCAAC 59.933 52.174 27.90 12.63 45.98 3.77
2453 2687 3.459710 AGGAGTACTGTCTAGCCAACT 57.540 47.619 0.00 0.00 0.00 3.16
2454 2688 3.358118 AGGAGTACTGTCTAGCCAACTC 58.642 50.000 0.00 0.00 33.81 3.01
2455 2689 3.010808 AGGAGTACTGTCTAGCCAACTCT 59.989 47.826 0.00 0.00 34.46 3.24
2456 2690 3.379057 GGAGTACTGTCTAGCCAACTCTC 59.621 52.174 0.00 0.00 34.46 3.20
2457 2691 3.011119 AGTACTGTCTAGCCAACTCTCG 58.989 50.000 0.00 0.00 0.00 4.04
2458 2692 1.178276 ACTGTCTAGCCAACTCTCGG 58.822 55.000 0.00 0.00 0.00 4.63
2459 2693 1.178276 CTGTCTAGCCAACTCTCGGT 58.822 55.000 0.00 0.00 0.00 4.69
2460 2694 1.133407 CTGTCTAGCCAACTCTCGGTC 59.867 57.143 0.00 0.00 0.00 4.79
2461 2695 1.174783 GTCTAGCCAACTCTCGGTCA 58.825 55.000 0.00 0.00 0.00 4.02
2462 2696 1.135344 GTCTAGCCAACTCTCGGTCAC 60.135 57.143 0.00 0.00 0.00 3.67
2463 2697 0.179161 CTAGCCAACTCTCGGTCACG 60.179 60.000 0.00 0.00 42.74 4.35
2464 2698 0.892358 TAGCCAACTCTCGGTCACGT 60.892 55.000 0.00 0.00 41.85 4.49
2465 2699 1.733399 GCCAACTCTCGGTCACGTC 60.733 63.158 0.00 0.00 41.85 4.34
2466 2700 1.658114 CCAACTCTCGGTCACGTCA 59.342 57.895 0.00 0.00 41.85 4.35
2467 2701 0.031585 CCAACTCTCGGTCACGTCAA 59.968 55.000 0.00 0.00 41.85 3.18
2468 2702 1.336887 CCAACTCTCGGTCACGTCAAT 60.337 52.381 0.00 0.00 41.85 2.57
2469 2703 1.986378 CAACTCTCGGTCACGTCAATC 59.014 52.381 0.00 0.00 41.85 2.67
2470 2704 0.168348 ACTCTCGGTCACGTCAATCG 59.832 55.000 0.00 0.00 46.00 3.34
2480 2714 2.920640 CGTCAATCGTGCAAGCATG 58.079 52.632 7.93 7.93 34.52 4.06
2490 2724 4.571250 CAAGCATGCTTGGCACAG 57.429 55.556 40.70 22.21 46.88 3.66
2491 2725 1.961378 CAAGCATGCTTGGCACAGA 59.039 52.632 40.70 0.00 46.88 3.41
2492 2726 0.530744 CAAGCATGCTTGGCACAGAT 59.469 50.000 40.70 14.16 46.88 2.90
2493 2727 1.746787 CAAGCATGCTTGGCACAGATA 59.253 47.619 40.70 0.00 46.88 1.98
2494 2728 2.359981 AGCATGCTTGGCACAGATAT 57.640 45.000 16.30 0.00 43.04 1.63
2495 2729 1.954382 AGCATGCTTGGCACAGATATG 59.046 47.619 16.30 0.00 43.04 1.78
2496 2730 1.951602 GCATGCTTGGCACAGATATGA 59.048 47.619 11.37 0.00 43.04 2.15
2497 2731 2.031069 GCATGCTTGGCACAGATATGAG 60.031 50.000 11.37 0.00 43.04 2.90
2498 2732 1.671979 TGCTTGGCACAGATATGAGC 58.328 50.000 0.69 0.69 42.39 4.26
2499 2733 0.950116 GCTTGGCACAGATATGAGCC 59.050 55.000 20.31 20.31 44.17 4.70
2500 2734 1.224075 CTTGGCACAGATATGAGCCG 58.776 55.000 21.36 6.78 46.32 5.52
2501 2735 0.179048 TTGGCACAGATATGAGCCGG 60.179 55.000 21.36 0.00 46.32 6.13
2502 2736 1.048160 TGGCACAGATATGAGCCGGA 61.048 55.000 21.36 4.67 46.32 5.14
2503 2737 0.601311 GGCACAGATATGAGCCGGAC 60.601 60.000 13.07 0.00 35.97 4.79
2504 2738 0.601311 GCACAGATATGAGCCGGACC 60.601 60.000 5.05 0.00 0.00 4.46
2505 2739 0.319040 CACAGATATGAGCCGGACCG 60.319 60.000 5.05 6.99 0.00 4.79
2506 2740 0.755698 ACAGATATGAGCCGGACCGT 60.756 55.000 13.94 0.00 0.00 4.83
2507 2741 0.389391 CAGATATGAGCCGGACCGTT 59.611 55.000 13.94 0.00 0.00 4.44
2508 2742 0.674534 AGATATGAGCCGGACCGTTC 59.325 55.000 13.94 10.68 0.00 3.95
2509 2743 0.663568 GATATGAGCCGGACCGTTCG 60.664 60.000 13.94 0.00 0.00 3.95
2510 2744 2.694829 ATATGAGCCGGACCGTTCGC 62.695 60.000 13.94 9.39 0.00 4.70
2512 2746 3.818787 GAGCCGGACCGTTCGCTA 61.819 66.667 14.94 0.00 0.00 4.26
2513 2747 3.346631 GAGCCGGACCGTTCGCTAA 62.347 63.158 14.94 0.00 0.00 3.09
2514 2748 3.184003 GCCGGACCGTTCGCTAAC 61.184 66.667 13.94 0.00 0.00 2.34
2515 2749 2.507769 CCGGACCGTTCGCTAACC 60.508 66.667 13.94 0.00 31.46 2.85
2516 2750 2.570181 CGGACCGTTCGCTAACCT 59.430 61.111 5.48 0.00 31.46 3.50
2517 2751 1.080298 CGGACCGTTCGCTAACCTT 60.080 57.895 5.48 0.00 31.46 3.50
2518 2752 1.349259 CGGACCGTTCGCTAACCTTG 61.349 60.000 5.48 0.00 31.46 3.61
2519 2753 0.037975 GGACCGTTCGCTAACCTTGA 60.038 55.000 0.00 0.00 31.46 3.02
2520 2754 1.405121 GGACCGTTCGCTAACCTTGAT 60.405 52.381 0.00 0.00 31.46 2.57
2521 2755 2.159198 GGACCGTTCGCTAACCTTGATA 60.159 50.000 0.00 0.00 31.46 2.15
2522 2756 2.856557 GACCGTTCGCTAACCTTGATAC 59.143 50.000 0.00 0.00 31.46 2.24
2523 2757 2.231964 ACCGTTCGCTAACCTTGATACA 59.768 45.455 0.00 0.00 31.46 2.29
2524 2758 3.118884 ACCGTTCGCTAACCTTGATACAT 60.119 43.478 0.00 0.00 31.46 2.29
2525 2759 3.245284 CCGTTCGCTAACCTTGATACATG 59.755 47.826 0.00 0.00 31.46 3.21
2526 2760 3.863424 CGTTCGCTAACCTTGATACATGT 59.137 43.478 2.69 2.69 31.46 3.21
2527 2761 4.328983 CGTTCGCTAACCTTGATACATGTT 59.671 41.667 2.30 0.00 31.46 2.71
2528 2762 5.560148 GTTCGCTAACCTTGATACATGTTG 58.440 41.667 2.30 0.00 0.00 3.33
2529 2763 4.188462 TCGCTAACCTTGATACATGTTGG 58.812 43.478 2.30 1.91 0.00 3.77
2530 2764 4.081365 TCGCTAACCTTGATACATGTTGGA 60.081 41.667 2.30 0.00 0.00 3.53
2531 2765 4.816385 CGCTAACCTTGATACATGTTGGAT 59.184 41.667 2.30 0.00 0.00 3.41
2532 2766 5.296780 CGCTAACCTTGATACATGTTGGATT 59.703 40.000 2.30 0.00 0.00 3.01
2533 2767 6.481976 CGCTAACCTTGATACATGTTGGATTA 59.518 38.462 2.30 0.00 0.00 1.75
2534 2768 7.518370 CGCTAACCTTGATACATGTTGGATTAC 60.518 40.741 2.30 0.00 0.00 1.89
2535 2769 7.282224 GCTAACCTTGATACATGTTGGATTACA 59.718 37.037 2.30 0.00 0.00 2.41
2536 2770 9.173021 CTAACCTTGATACATGTTGGATTACAA 57.827 33.333 2.30 0.46 36.54 2.41
2537 2771 8.415950 AACCTTGATACATGTTGGATTACAAA 57.584 30.769 2.30 0.00 41.58 2.83
2538 2772 8.415950 ACCTTGATACATGTTGGATTACAAAA 57.584 30.769 2.30 0.00 41.58 2.44
2539 2773 8.522830 ACCTTGATACATGTTGGATTACAAAAG 58.477 33.333 2.30 0.00 41.58 2.27
2540 2774 8.739039 CCTTGATACATGTTGGATTACAAAAGA 58.261 33.333 2.30 0.00 41.58 2.52
2543 2777 9.295825 TGATACATGTTGGATTACAAAAGAAGT 57.704 29.630 2.30 0.00 41.58 3.01
2559 2793 9.205719 ACAAAAGAAGTAAAACTACTAGCTAGC 57.794 33.333 20.91 6.62 0.00 3.42
2560 2794 9.425577 CAAAAGAAGTAAAACTACTAGCTAGCT 57.574 33.333 23.12 23.12 0.00 3.32
2561 2795 9.642327 AAAAGAAGTAAAACTACTAGCTAGCTC 57.358 33.333 23.26 2.21 0.00 4.09
2562 2796 8.584063 AAGAAGTAAAACTACTAGCTAGCTCT 57.416 34.615 23.26 10.38 0.00 4.09
2563 2797 8.217131 AGAAGTAAAACTACTAGCTAGCTCTC 57.783 38.462 23.26 7.45 0.00 3.20
2564 2798 6.947644 AGTAAAACTACTAGCTAGCTCTCC 57.052 41.667 23.26 1.88 0.00 3.71
2565 2799 6.424883 AGTAAAACTACTAGCTAGCTCTCCA 58.575 40.000 23.26 1.96 0.00 3.86
2566 2800 6.890814 AGTAAAACTACTAGCTAGCTCTCCAA 59.109 38.462 23.26 1.52 0.00 3.53
2567 2801 6.800072 AAAACTACTAGCTAGCTCTCCAAT 57.200 37.500 23.26 2.08 0.00 3.16
2568 2802 6.399639 AAACTACTAGCTAGCTCTCCAATC 57.600 41.667 23.26 0.00 0.00 2.67
2569 2803 5.319043 ACTACTAGCTAGCTCTCCAATCT 57.681 43.478 23.26 0.00 0.00 2.40
2570 2804 5.313712 ACTACTAGCTAGCTCTCCAATCTC 58.686 45.833 23.26 0.00 0.00 2.75
2571 2805 4.453480 ACTAGCTAGCTCTCCAATCTCT 57.547 45.455 23.26 0.00 0.00 3.10
2572 2806 5.576563 ACTAGCTAGCTCTCCAATCTCTA 57.423 43.478 23.26 0.00 0.00 2.43
2573 2807 5.313712 ACTAGCTAGCTCTCCAATCTCTAC 58.686 45.833 23.26 0.00 0.00 2.59
2574 2808 4.453480 AGCTAGCTCTCCAATCTCTACT 57.547 45.455 12.68 0.00 0.00 2.57
2575 2809 5.576563 AGCTAGCTCTCCAATCTCTACTA 57.423 43.478 12.68 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.124570 CGTGGCTCCATTCTGGGG 60.125 66.667 0.00 0.00 42.32 4.96
6 7 0.322456 TTTCGTGGCTCCATTCTGGG 60.322 55.000 0.00 0.00 38.32 4.45
7 8 0.804989 GTTTCGTGGCTCCATTCTGG 59.195 55.000 0.00 0.00 39.43 3.86
8 9 0.443869 CGTTTCGTGGCTCCATTCTG 59.556 55.000 0.00 0.00 0.00 3.02
9 10 0.320374 TCGTTTCGTGGCTCCATTCT 59.680 50.000 0.00 0.00 0.00 2.40
10 11 0.442699 GTCGTTTCGTGGCTCCATTC 59.557 55.000 0.00 0.00 0.00 2.67
11 12 1.289109 CGTCGTTTCGTGGCTCCATT 61.289 55.000 0.00 0.00 0.00 3.16
12 13 1.736645 CGTCGTTTCGTGGCTCCAT 60.737 57.895 0.00 0.00 0.00 3.41
13 14 2.355363 CGTCGTTTCGTGGCTCCA 60.355 61.111 0.00 0.00 0.00 3.86
14 15 3.110178 CCGTCGTTTCGTGGCTCC 61.110 66.667 0.00 0.00 0.00 4.70
69 70 1.047801 GAGGAGGAGGAGATCTTGGC 58.952 60.000 0.00 0.00 0.00 4.52
92 93 2.365095 AATCCGGCGATTCCTCGTCC 62.365 60.000 9.30 0.00 46.68 4.79
103 104 1.917782 TTTCCTTTGCGAATCCGGCG 61.918 55.000 0.00 0.00 36.06 6.46
105 106 2.094752 ACAATTTCCTTTGCGAATCCGG 60.095 45.455 0.00 0.00 36.06 5.14
110 111 5.293079 CCTTTTTCACAATTTCCTTTGCGAA 59.707 36.000 0.00 0.00 0.00 4.70
133 134 3.680338 GACTCCGCCGACGAGTTCC 62.680 68.421 0.00 0.00 43.93 3.62
137 138 2.558554 AAATGGACTCCGCCGACGAG 62.559 60.000 0.00 0.00 43.93 4.18
171 172 0.736053 GCCCACAAGTTGTTCGACAA 59.264 50.000 5.57 0.00 35.42 3.18
173 174 1.278637 CGCCCACAAGTTGTTCGAC 59.721 57.895 5.57 0.00 0.00 4.20
186 187 1.680989 TCTCCTTCATCGACGCCCA 60.681 57.895 0.00 0.00 0.00 5.36
196 197 1.000607 CTTTGTCGGTCGTCTCCTTCA 60.001 52.381 0.00 0.00 0.00 3.02
211 212 1.598130 GCAGCACGACTCCCTTTGT 60.598 57.895 0.00 0.00 0.00 2.83
213 214 2.032681 GGCAGCACGACTCCCTTT 59.967 61.111 0.00 0.00 0.00 3.11
223 224 4.767255 CTGGTCCGAGGGCAGCAC 62.767 72.222 0.00 0.00 0.00 4.40
262 263 2.022129 CCTCACCAACACGCTCGTC 61.022 63.158 0.00 0.00 0.00 4.20
272 273 1.264749 CCCGTCCAGATCCTCACCAA 61.265 60.000 0.00 0.00 0.00 3.67
296 297 4.025401 CACCGTTGTCTTGCCGCC 62.025 66.667 0.00 0.00 0.00 6.13
337 406 1.605710 CCGCAATATCCCTTCTGCAAG 59.394 52.381 0.00 0.00 34.39 4.01
345 415 3.953775 CGGGGCCGCAATATCCCT 61.954 66.667 21.08 0.00 39.95 4.20
362 433 2.745492 GTGACTCTGCCAGCTGCC 60.745 66.667 8.66 0.00 40.16 4.85
364 435 2.433838 CGGTGACTCTGCCAGCTG 60.434 66.667 6.78 6.78 0.00 4.24
376 447 2.267642 CGCCCATTTCTCCGGTGA 59.732 61.111 0.00 0.06 0.00 4.02
426 498 2.597510 AACAACAAGCCCTCGCCC 60.598 61.111 0.00 0.00 34.57 6.13
436 508 4.715534 TCCTCTCCCATTACAACAACAA 57.284 40.909 0.00 0.00 0.00 2.83
437 509 4.288366 TCATCCTCTCCCATTACAACAACA 59.712 41.667 0.00 0.00 0.00 3.33
438 510 4.636206 GTCATCCTCTCCCATTACAACAAC 59.364 45.833 0.00 0.00 0.00 3.32
439 511 4.324254 GGTCATCCTCTCCCATTACAACAA 60.324 45.833 0.00 0.00 0.00 2.83
445 517 4.047166 ACATTGGTCATCCTCTCCCATTA 58.953 43.478 0.00 0.00 34.23 1.90
448 520 1.971149 ACATTGGTCATCCTCTCCCA 58.029 50.000 0.00 0.00 34.23 4.37
460 532 0.323629 CTGGTCGGTGGTACATTGGT 59.676 55.000 0.00 0.00 44.52 3.67
531 603 4.733725 TTCCCCTAGCCCGCTGGT 62.734 66.667 0.00 0.00 0.00 4.00
532 604 3.866582 CTTCCCCTAGCCCGCTGG 61.867 72.222 0.00 0.00 0.00 4.85
533 605 2.317149 CTTCTTCCCCTAGCCCGCTG 62.317 65.000 0.00 0.00 0.00 5.18
534 606 2.040606 TTCTTCCCCTAGCCCGCT 59.959 61.111 0.00 0.00 0.00 5.52
535 607 1.047034 TACTTCTTCCCCTAGCCCGC 61.047 60.000 0.00 0.00 0.00 6.13
536 608 1.041437 CTACTTCTTCCCCTAGCCCG 58.959 60.000 0.00 0.00 0.00 6.13
537 609 1.344189 ACCTACTTCTTCCCCTAGCCC 60.344 57.143 0.00 0.00 0.00 5.19
538 610 1.763545 CACCTACTTCTTCCCCTAGCC 59.236 57.143 0.00 0.00 0.00 3.93
539 611 1.763545 CCACCTACTTCTTCCCCTAGC 59.236 57.143 0.00 0.00 0.00 3.42
540 612 2.399580 CCCACCTACTTCTTCCCCTAG 58.600 57.143 0.00 0.00 0.00 3.02
541 613 1.624391 GCCCACCTACTTCTTCCCCTA 60.624 57.143 0.00 0.00 0.00 3.53
542 614 0.914902 GCCCACCTACTTCTTCCCCT 60.915 60.000 0.00 0.00 0.00 4.79
543 615 1.608154 GCCCACCTACTTCTTCCCC 59.392 63.158 0.00 0.00 0.00 4.81
544 616 1.221021 CGCCCACCTACTTCTTCCC 59.779 63.158 0.00 0.00 0.00 3.97
545 617 1.449778 GCGCCCACCTACTTCTTCC 60.450 63.158 0.00 0.00 0.00 3.46
546 618 1.810030 CGCGCCCACCTACTTCTTC 60.810 63.158 0.00 0.00 0.00 2.87
547 619 2.264794 CGCGCCCACCTACTTCTT 59.735 61.111 0.00 0.00 0.00 2.52
548 620 4.452733 GCGCGCCCACCTACTTCT 62.453 66.667 23.24 0.00 0.00 2.85
564 636 4.489795 CACGTGACAGATGCGCGC 62.490 66.667 27.26 27.26 42.50 6.86
565 637 3.059472 GACACGTGACAGATGCGCG 62.059 63.158 25.01 0.00 44.14 6.86
566 638 1.734477 AGACACGTGACAGATGCGC 60.734 57.895 25.01 0.00 0.00 6.09
567 639 1.347097 CCAGACACGTGACAGATGCG 61.347 60.000 25.01 1.92 0.00 4.73
568 640 1.016130 CCCAGACACGTGACAGATGC 61.016 60.000 25.01 2.21 0.00 3.91
569 641 1.016130 GCCCAGACACGTGACAGATG 61.016 60.000 25.01 10.54 0.00 2.90
570 642 1.188219 AGCCCAGACACGTGACAGAT 61.188 55.000 25.01 5.08 0.00 2.90
571 643 1.832608 AGCCCAGACACGTGACAGA 60.833 57.895 25.01 0.00 0.00 3.41
572 644 1.665916 CAGCCCAGACACGTGACAG 60.666 63.158 25.01 13.30 0.00 3.51
573 645 2.131067 TCAGCCCAGACACGTGACA 61.131 57.895 25.01 0.00 0.00 3.58
574 646 1.664965 GTCAGCCCAGACACGTGAC 60.665 63.158 25.01 17.23 38.40 3.67
575 647 2.734591 GTCAGCCCAGACACGTGA 59.265 61.111 25.01 0.00 38.40 4.35
576 648 2.734723 CGTCAGCCCAGACACGTG 60.735 66.667 15.48 15.48 38.43 4.49
577 649 4.664677 GCGTCAGCCCAGACACGT 62.665 66.667 0.00 0.00 38.43 4.49
578 650 4.662961 TGCGTCAGCCCAGACACG 62.663 66.667 0.00 0.00 44.33 4.49
579 651 1.237285 ATTTGCGTCAGCCCAGACAC 61.237 55.000 0.00 0.00 44.33 3.67
580 652 0.955428 GATTTGCGTCAGCCCAGACA 60.955 55.000 0.00 0.00 44.33 3.41
581 653 1.648467 GGATTTGCGTCAGCCCAGAC 61.648 60.000 0.00 0.00 44.33 3.51
582 654 1.377202 GGATTTGCGTCAGCCCAGA 60.377 57.895 0.00 0.00 44.33 3.86
583 655 2.753966 CGGATTTGCGTCAGCCCAG 61.754 63.158 0.00 0.00 44.33 4.45
584 656 2.745884 CGGATTTGCGTCAGCCCA 60.746 61.111 0.00 0.00 44.33 5.36
585 657 3.508840 CCGGATTTGCGTCAGCCC 61.509 66.667 0.00 0.00 44.33 5.19
586 658 4.179579 GCCGGATTTGCGTCAGCC 62.180 66.667 5.05 0.00 44.33 4.85
587 659 1.366111 TTAGCCGGATTTGCGTCAGC 61.366 55.000 5.05 0.00 45.41 4.26
588 660 1.083489 TTTAGCCGGATTTGCGTCAG 58.917 50.000 5.05 0.00 0.00 3.51
589 661 1.524848 TTTTAGCCGGATTTGCGTCA 58.475 45.000 5.05 0.00 0.00 4.35
590 662 2.622546 TTTTTAGCCGGATTTGCGTC 57.377 45.000 5.05 0.00 0.00 5.19
606 678 2.614134 TCCATTCCCGGTCCATTTTT 57.386 45.000 0.00 0.00 0.00 1.94
607 679 2.666317 GATCCATTCCCGGTCCATTTT 58.334 47.619 0.00 0.00 0.00 1.82
608 680 1.476833 CGATCCATTCCCGGTCCATTT 60.477 52.381 0.00 0.00 0.00 2.32
609 681 0.108585 CGATCCATTCCCGGTCCATT 59.891 55.000 0.00 0.00 0.00 3.16
610 682 1.754745 CGATCCATTCCCGGTCCAT 59.245 57.895 0.00 0.00 0.00 3.41
611 683 2.439960 CCGATCCATTCCCGGTCCA 61.440 63.158 0.00 0.00 38.55 4.02
612 684 2.426023 CCGATCCATTCCCGGTCC 59.574 66.667 0.00 0.00 38.55 4.46
613 685 2.280865 GCCGATCCATTCCCGGTC 60.281 66.667 0.00 0.00 44.63 4.79
614 686 3.087253 TGCCGATCCATTCCCGGT 61.087 61.111 0.00 0.00 44.63 5.28
615 687 2.281070 CTGCCGATCCATTCCCGG 60.281 66.667 0.00 0.00 45.51 5.73
616 688 2.116983 ATCCTGCCGATCCATTCCCG 62.117 60.000 0.00 0.00 0.00 5.14
617 689 0.607489 CATCCTGCCGATCCATTCCC 60.607 60.000 0.00 0.00 0.00 3.97
618 690 0.397941 TCATCCTGCCGATCCATTCC 59.602 55.000 0.00 0.00 0.00 3.01
619 691 1.517242 GTCATCCTGCCGATCCATTC 58.483 55.000 0.00 0.00 0.00 2.67
620 692 0.250038 CGTCATCCTGCCGATCCATT 60.250 55.000 0.00 0.00 0.00 3.16
621 693 1.115326 TCGTCATCCTGCCGATCCAT 61.115 55.000 0.00 0.00 0.00 3.41
622 694 1.326951 TTCGTCATCCTGCCGATCCA 61.327 55.000 0.00 0.00 0.00 3.41
623 695 0.179084 TTTCGTCATCCTGCCGATCC 60.179 55.000 0.00 0.00 0.00 3.36
624 696 1.594862 CTTTTCGTCATCCTGCCGATC 59.405 52.381 0.00 0.00 0.00 3.69
625 697 1.656652 CTTTTCGTCATCCTGCCGAT 58.343 50.000 0.00 0.00 0.00 4.18
626 698 1.019278 GCTTTTCGTCATCCTGCCGA 61.019 55.000 0.00 0.00 0.00 5.54
627 699 1.425428 GCTTTTCGTCATCCTGCCG 59.575 57.895 0.00 0.00 0.00 5.69
628 700 1.425428 CGCTTTTCGTCATCCTGCC 59.575 57.895 0.00 0.00 0.00 4.85
629 701 1.019278 TCCGCTTTTCGTCATCCTGC 61.019 55.000 0.00 0.00 36.19 4.85
630 702 0.721718 GTCCGCTTTTCGTCATCCTG 59.278 55.000 0.00 0.00 36.19 3.86
631 703 0.736325 CGTCCGCTTTTCGTCATCCT 60.736 55.000 0.00 0.00 36.19 3.24
632 704 1.708027 CGTCCGCTTTTCGTCATCC 59.292 57.895 0.00 0.00 36.19 3.51
633 705 1.058903 GCGTCCGCTTTTCGTCATC 59.941 57.895 4.10 0.00 38.26 2.92
634 706 2.726691 CGCGTCCGCTTTTCGTCAT 61.727 57.895 10.21 0.00 39.32 3.06
635 707 3.399770 CGCGTCCGCTTTTCGTCA 61.400 61.111 10.21 0.00 39.32 4.35
646 718 4.712873 CCAAACGAACGCGCGTCC 62.713 66.667 37.77 25.37 44.86 4.79
647 719 2.858807 GATCCAAACGAACGCGCGTC 62.859 60.000 37.77 26.32 44.86 5.19
649 721 2.275812 GATCCAAACGAACGCGCG 60.276 61.111 30.96 30.96 42.48 6.86
650 722 2.275812 CGATCCAAACGAACGCGC 60.276 61.111 5.73 0.00 42.48 6.86
651 723 2.394136 CCGATCCAAACGAACGCG 59.606 61.111 3.53 3.53 44.79 6.01
652 724 2.097728 GCCGATCCAAACGAACGC 59.902 61.111 0.00 0.00 35.57 4.84
653 725 2.394136 CGCCGATCCAAACGAACG 59.606 61.111 0.00 0.00 36.58 3.95
654 726 2.097728 GCGCCGATCCAAACGAAC 59.902 61.111 0.00 0.00 0.00 3.95
655 727 3.483665 CGCGCCGATCCAAACGAA 61.484 61.111 0.00 0.00 0.00 3.85
656 728 4.728102 ACGCGCCGATCCAAACGA 62.728 61.111 5.73 0.00 0.00 3.85
657 729 3.784412 AACGCGCCGATCCAAACG 61.784 61.111 5.73 0.00 0.00 3.60
658 730 2.202298 CAACGCGCCGATCCAAAC 60.202 61.111 5.73 0.00 0.00 2.93
659 731 3.427425 CCAACGCGCCGATCCAAA 61.427 61.111 5.73 0.00 0.00 3.28
668 740 3.194272 AAAAGTCAGCCCAACGCGC 62.194 57.895 5.73 0.00 44.76 6.86
669 741 1.082104 GAAAAGTCAGCCCAACGCG 60.082 57.895 3.53 3.53 44.76 6.01
670 742 0.040067 CAGAAAAGTCAGCCCAACGC 60.040 55.000 0.00 0.00 37.98 4.84
671 743 1.264288 GACAGAAAAGTCAGCCCAACG 59.736 52.381 0.00 0.00 38.40 4.10
672 744 1.609072 GGACAGAAAAGTCAGCCCAAC 59.391 52.381 0.00 0.00 40.29 3.77
673 745 1.813862 CGGACAGAAAAGTCAGCCCAA 60.814 52.381 0.00 0.00 40.29 4.12
674 746 0.250295 CGGACAGAAAAGTCAGCCCA 60.250 55.000 0.00 0.00 40.29 5.36
675 747 2.544726 CGGACAGAAAAGTCAGCCC 58.455 57.895 0.00 0.00 40.29 5.19
678 750 1.493311 GCGCGGACAGAAAAGTCAG 59.507 57.895 8.83 0.00 40.29 3.51
679 751 1.959226 GGCGCGGACAGAAAAGTCA 60.959 57.895 8.83 0.00 40.29 3.41
680 752 2.861006 GGCGCGGACAGAAAAGTC 59.139 61.111 8.83 0.00 37.80 3.01
681 753 2.781595 ATCGGCGCGGACAGAAAAGT 62.782 55.000 20.65 0.00 0.00 2.66
682 754 2.025359 GATCGGCGCGGACAGAAAAG 62.025 60.000 20.65 0.00 0.00 2.27
683 755 2.047655 ATCGGCGCGGACAGAAAA 60.048 55.556 20.65 0.00 0.00 2.29
684 756 2.508439 GATCGGCGCGGACAGAAA 60.508 61.111 20.65 0.00 0.00 2.52
685 757 4.508128 GGATCGGCGCGGACAGAA 62.508 66.667 20.65 0.00 0.00 3.02
687 759 4.812476 TTGGATCGGCGCGGACAG 62.812 66.667 20.65 0.00 0.00 3.51
688 760 4.380781 TTTGGATCGGCGCGGACA 62.381 61.111 20.65 11.80 0.00 4.02
689 761 3.861263 GTTTGGATCGGCGCGGAC 61.861 66.667 20.65 13.38 0.00 4.79
708 780 3.849953 ATTTCTTCCGCGCGCGTC 61.850 61.111 45.51 21.85 37.81 5.19
709 781 4.147322 CATTTCTTCCGCGCGCGT 62.147 61.111 45.51 27.24 37.81 6.01
710 782 4.868900 CCATTTCTTCCGCGCGCG 62.869 66.667 43.73 43.73 39.44 6.86
711 783 4.536687 CCCATTTCTTCCGCGCGC 62.537 66.667 27.36 23.91 0.00 6.86
712 784 2.686816 AACCCATTTCTTCCGCGCG 61.687 57.895 25.67 25.67 0.00 6.86
713 785 1.154035 CAACCCATTTCTTCCGCGC 60.154 57.895 0.00 0.00 0.00 6.86
714 786 1.154035 GCAACCCATTTCTTCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
715 787 1.215382 GGCAACCCATTTCTTCCGC 59.785 57.895 0.00 0.00 0.00 5.54
716 788 1.506262 CGGCAACCCATTTCTTCCG 59.494 57.895 0.00 0.00 0.00 4.30
717 789 1.215382 GCGGCAACCCATTTCTTCC 59.785 57.895 0.00 0.00 0.00 3.46
718 790 1.154035 CGCGGCAACCCATTTCTTC 60.154 57.895 0.00 0.00 0.00 2.87
719 791 1.460273 AACGCGGCAACCCATTTCTT 61.460 50.000 12.47 0.00 0.00 2.52
720 792 1.901464 AACGCGGCAACCCATTTCT 60.901 52.632 12.47 0.00 0.00 2.52
721 793 1.732683 CAACGCGGCAACCCATTTC 60.733 57.895 12.47 0.00 0.00 2.17
722 794 2.338257 CAACGCGGCAACCCATTT 59.662 55.556 12.47 0.00 0.00 2.32
723 795 3.679738 CCAACGCGGCAACCCATT 61.680 61.111 12.47 0.00 0.00 3.16
724 796 4.652131 TCCAACGCGGCAACCCAT 62.652 61.111 12.47 0.00 33.14 4.00
727 799 3.284449 AACTCCAACGCGGCAACC 61.284 61.111 12.47 0.00 33.14 3.77
728 800 2.051345 CAACTCCAACGCGGCAAC 60.051 61.111 12.47 0.00 33.14 4.17
729 801 3.959975 GCAACTCCAACGCGGCAA 61.960 61.111 12.47 0.00 33.14 4.52
730 802 4.927782 AGCAACTCCAACGCGGCA 62.928 61.111 12.47 0.00 33.14 5.69
731 803 4.090057 GAGCAACTCCAACGCGGC 62.090 66.667 12.47 0.36 33.14 6.53
732 804 0.669318 TAAGAGCAACTCCAACGCGG 60.669 55.000 12.47 0.00 0.00 6.46
733 805 0.716108 CTAAGAGCAACTCCAACGCG 59.284 55.000 3.53 3.53 0.00 6.01
734 806 0.444260 GCTAAGAGCAACTCCAACGC 59.556 55.000 0.00 0.00 41.89 4.84
735 807 2.086054 AGCTAAGAGCAACTCCAACG 57.914 50.000 0.64 0.00 45.56 4.10
736 808 4.195225 AGTAGCTAAGAGCAACTCCAAC 57.805 45.455 0.00 0.00 45.56 3.77
737 809 5.017490 ACTAGTAGCTAAGAGCAACTCCAA 58.983 41.667 0.00 0.00 45.56 3.53
738 810 4.601084 ACTAGTAGCTAAGAGCAACTCCA 58.399 43.478 0.00 0.00 45.56 3.86
739 811 5.589452 TGTACTAGTAGCTAAGAGCAACTCC 59.411 44.000 1.87 0.00 45.56 3.85
740 812 6.680874 TGTACTAGTAGCTAAGAGCAACTC 57.319 41.667 1.87 0.00 45.56 3.01
741 813 7.463961 TTTGTACTAGTAGCTAAGAGCAACT 57.536 36.000 1.87 0.00 45.56 3.16
742 814 7.813627 AGTTTTGTACTAGTAGCTAAGAGCAAC 59.186 37.037 1.87 0.00 38.50 4.17
743 815 7.893658 AGTTTTGTACTAGTAGCTAAGAGCAA 58.106 34.615 1.87 0.00 38.50 3.91
744 816 7.463961 AGTTTTGTACTAGTAGCTAAGAGCA 57.536 36.000 1.87 0.00 38.50 4.26
745 817 9.852091 TTTAGTTTTGTACTAGTAGCTAAGAGC 57.148 33.333 1.87 0.00 40.35 4.09
748 820 9.583765 CCCTTTAGTTTTGTACTAGTAGCTAAG 57.416 37.037 1.87 0.00 40.35 2.18
768 840 3.498481 GGGATATGCATGCAGACCCTTTA 60.498 47.826 33.30 19.79 35.35 1.85
871 944 3.637273 GTGGAGCCGGAGTTGGGT 61.637 66.667 5.05 0.00 43.87 4.51
885 958 1.739466 GAGTATGTGGTGCATGTGTGG 59.261 52.381 0.00 0.00 38.47 4.17
909 982 3.766691 GCGAGTTGGGGAGGCGTA 61.767 66.667 0.00 0.00 0.00 4.42
972 1045 1.588403 CCTGATGAGACGCGCAGAG 60.588 63.158 5.73 0.00 0.00 3.35
1059 1154 2.258726 GCCGCCGACCTCAAAGTTT 61.259 57.895 0.00 0.00 0.00 2.66
1110 1205 2.623889 CCAATGGTTGTACGTTTGGGAA 59.376 45.455 0.00 0.00 0.00 3.97
1179 1310 0.179119 GGTAGATCAACGACGGTGGG 60.179 60.000 13.91 0.00 0.00 4.61
1186 1317 3.181490 CCAAGATGTCGGTAGATCAACGA 60.181 47.826 0.00 0.00 0.00 3.85
1187 1318 3.116300 CCAAGATGTCGGTAGATCAACG 58.884 50.000 0.00 0.00 0.00 4.10
1188 1319 4.124851 ACCAAGATGTCGGTAGATCAAC 57.875 45.455 0.00 0.00 32.31 3.18
1189 1320 4.221924 TCAACCAAGATGTCGGTAGATCAA 59.778 41.667 0.00 0.00 33.17 2.57
1190 1321 3.767131 TCAACCAAGATGTCGGTAGATCA 59.233 43.478 0.00 0.00 33.17 2.92
1192 1323 6.479972 TTATCAACCAAGATGTCGGTAGAT 57.520 37.500 0.00 0.00 33.17 1.98
1195 1326 6.882140 ACAATTTATCAACCAAGATGTCGGTA 59.118 34.615 0.00 0.00 33.17 4.02
1196 1327 5.710099 ACAATTTATCAACCAAGATGTCGGT 59.290 36.000 0.00 0.00 36.98 4.69
1197 1328 6.194796 ACAATTTATCAACCAAGATGTCGG 57.805 37.500 0.00 0.00 0.00 4.79
1198 1329 8.519492 AAAACAATTTATCAACCAAGATGTCG 57.481 30.769 0.00 0.00 0.00 4.35
1226 1379 1.355005 CACGATCACGCCACATACAA 58.645 50.000 0.00 0.00 43.96 2.41
1227 1380 1.081556 GCACGATCACGCCACATACA 61.082 55.000 0.00 0.00 43.96 2.29
1238 1395 2.664518 TGCACGCAAGCACGATCA 60.665 55.556 0.00 0.00 40.11 2.92
1247 1404 4.693095 TGTACTTGAAATCTATGCACGCAA 59.307 37.500 0.00 0.00 0.00 4.85
1531 1697 1.214589 GCCAAAGCACAGCCATCAG 59.785 57.895 0.00 0.00 39.53 2.90
1539 1705 1.321474 CAAGAAGAGGCCAAAGCACA 58.679 50.000 5.01 0.00 42.56 4.57
1661 1833 8.922058 ACATGGTACTATAACTAAGTTGAACG 57.078 34.615 0.00 0.00 0.00 3.95
1676 1848 7.035004 GGTTTCGTGTACATTACATGGTACTA 58.965 38.462 0.00 0.00 44.00 1.82
1686 1858 4.822896 AGCCTTTTGGTTTCGTGTACATTA 59.177 37.500 0.00 0.00 42.99 1.90
1696 1868 8.925700 CACTAATTTCATTAGCCTTTTGGTTTC 58.074 33.333 3.81 0.00 44.73 2.78
1739 1911 2.796032 GCAATATGCAAGGAAACTCCGC 60.796 50.000 0.00 0.00 44.26 5.54
1768 1940 9.706691 CCTCTATGTACAAAGAAAAAGAGTACA 57.293 33.333 0.00 0.00 46.03 2.90
1769 1941 8.657729 GCCTCTATGTACAAAGAAAAAGAGTAC 58.342 37.037 0.00 0.00 36.49 2.73
1770 1942 8.594550 AGCCTCTATGTACAAAGAAAAAGAGTA 58.405 33.333 0.00 0.00 0.00 2.59
1771 1943 7.454225 AGCCTCTATGTACAAAGAAAAAGAGT 58.546 34.615 0.00 0.00 0.00 3.24
2065 2253 1.965754 AAGGCGATGGAGAGGAGCAC 61.966 60.000 0.00 0.00 0.00 4.40
2110 2298 2.030274 GCATAACACCGCAAAGAACCTT 60.030 45.455 0.00 0.00 0.00 3.50
2153 2341 1.337118 GACAATGGGCCTGTTTTCCA 58.663 50.000 4.53 0.00 34.79 3.53
2160 2348 1.097547 GTCGGATGACAATGGGCCTG 61.098 60.000 4.53 0.00 44.82 4.85
2190 2383 3.244318 ACACCTCCCTAAACTAAACACCG 60.244 47.826 0.00 0.00 0.00 4.94
2227 2459 3.723245 GGGCGGTTCTAACCCTCT 58.277 61.111 6.30 0.00 46.53 3.69
2266 2500 4.396790 GTCGTAGAGAACATGAGGAAGAGT 59.603 45.833 0.00 0.00 36.95 3.24
2273 2507 2.014857 TCCCGTCGTAGAGAACATGAG 58.985 52.381 0.00 0.00 36.95 2.90
2347 2581 2.112190 AGTTTCCCCCGCAAAAAGAAA 58.888 42.857 0.00 0.00 0.00 2.52
2350 2584 1.410882 TCAAGTTTCCCCCGCAAAAAG 59.589 47.619 0.00 0.00 0.00 2.27
2351 2585 1.410882 CTCAAGTTTCCCCCGCAAAAA 59.589 47.619 0.00 0.00 0.00 1.94
2352 2586 1.036707 CTCAAGTTTCCCCCGCAAAA 58.963 50.000 0.00 0.00 0.00 2.44
2353 2587 0.183971 TCTCAAGTTTCCCCCGCAAA 59.816 50.000 0.00 0.00 0.00 3.68
2354 2588 0.250727 CTCTCAAGTTTCCCCCGCAA 60.251 55.000 0.00 0.00 0.00 4.85
2355 2589 1.374947 CTCTCAAGTTTCCCCCGCA 59.625 57.895 0.00 0.00 0.00 5.69
2356 2590 2.041115 GCTCTCAAGTTTCCCCCGC 61.041 63.158 0.00 0.00 0.00 6.13
2357 2591 0.036875 AAGCTCTCAAGTTTCCCCCG 59.963 55.000 0.00 0.00 0.00 5.73
2358 2592 2.294449 AAAGCTCTCAAGTTTCCCCC 57.706 50.000 0.00 0.00 0.00 5.40
2359 2593 6.659668 ACTTAATAAAGCTCTCAAGTTTCCCC 59.340 38.462 0.00 0.00 36.05 4.81
2360 2594 7.689446 ACTTAATAAAGCTCTCAAGTTTCCC 57.311 36.000 0.00 0.00 36.05 3.97
2390 2624 3.189618 TGGCTGACTGCATAGAGAATG 57.810 47.619 6.65 0.00 45.15 2.67
2391 2625 3.920231 TTGGCTGACTGCATAGAGAAT 57.080 42.857 6.65 0.00 45.15 2.40
2392 2626 3.701205 TTTGGCTGACTGCATAGAGAA 57.299 42.857 6.65 0.00 45.15 2.87
2393 2627 3.603532 CTTTTGGCTGACTGCATAGAGA 58.396 45.455 6.65 0.00 45.15 3.10
2394 2628 2.681848 CCTTTTGGCTGACTGCATAGAG 59.318 50.000 6.65 0.00 45.15 2.43
2395 2629 2.715046 CCTTTTGGCTGACTGCATAGA 58.285 47.619 6.65 0.00 45.15 1.98
2408 2642 2.165167 TCTTGATCAGCAGCCTTTTGG 58.835 47.619 0.00 0.00 44.18 3.28
2409 2643 3.834610 CTTCTTGATCAGCAGCCTTTTG 58.165 45.455 0.00 0.00 0.00 2.44
2410 2644 2.230750 GCTTCTTGATCAGCAGCCTTTT 59.769 45.455 10.37 0.00 35.84 2.27
2411 2645 1.817447 GCTTCTTGATCAGCAGCCTTT 59.183 47.619 10.37 0.00 35.84 3.11
2412 2646 1.004511 AGCTTCTTGATCAGCAGCCTT 59.995 47.619 15.57 0.85 42.43 4.35
2413 2647 0.619505 AGCTTCTTGATCAGCAGCCT 59.380 50.000 15.57 1.58 42.43 4.58
2414 2648 2.211806 CTAGCTTCTTGATCAGCAGCC 58.788 52.381 15.57 0.00 42.43 4.85
2415 2649 2.158986 TCCTAGCTTCTTGATCAGCAGC 60.159 50.000 12.66 12.66 41.81 5.25
2416 2650 3.132646 ACTCCTAGCTTCTTGATCAGCAG 59.867 47.826 7.34 0.00 38.61 4.24
2417 2651 3.102972 ACTCCTAGCTTCTTGATCAGCA 58.897 45.455 7.34 0.00 38.61 4.41
2418 2652 3.817709 ACTCCTAGCTTCTTGATCAGC 57.182 47.619 0.00 0.00 36.16 4.26
2419 2653 5.359576 ACAGTACTCCTAGCTTCTTGATCAG 59.640 44.000 0.00 0.00 0.00 2.90
2420 2654 5.265191 ACAGTACTCCTAGCTTCTTGATCA 58.735 41.667 0.00 0.00 0.00 2.92
2421 2655 5.592688 AGACAGTACTCCTAGCTTCTTGATC 59.407 44.000 0.00 0.00 0.00 2.92
2422 2656 5.515106 AGACAGTACTCCTAGCTTCTTGAT 58.485 41.667 0.00 0.00 0.00 2.57
2423 2657 4.924625 AGACAGTACTCCTAGCTTCTTGA 58.075 43.478 0.00 0.00 0.00 3.02
2424 2658 6.371809 CTAGACAGTACTCCTAGCTTCTTG 57.628 45.833 13.10 0.00 0.00 3.02
2431 2665 4.528920 AGTTGGCTAGACAGTACTCCTAG 58.471 47.826 18.13 18.13 34.52 3.02
2432 2666 4.227754 AGAGTTGGCTAGACAGTACTCCTA 59.772 45.833 21.82 0.00 0.00 2.94
2433 2667 3.010808 AGAGTTGGCTAGACAGTACTCCT 59.989 47.826 21.82 10.31 0.00 3.69
2434 2668 3.358118 AGAGTTGGCTAGACAGTACTCC 58.642 50.000 21.82 8.59 0.00 3.85
2435 2669 3.064271 CGAGAGTTGGCTAGACAGTACTC 59.936 52.174 19.03 19.03 0.00 2.59
2436 2670 3.011119 CGAGAGTTGGCTAGACAGTACT 58.989 50.000 2.38 2.38 0.00 2.73
2437 2671 2.097791 CCGAGAGTTGGCTAGACAGTAC 59.902 54.545 0.00 0.00 0.00 2.73
2438 2672 2.290768 ACCGAGAGTTGGCTAGACAGTA 60.291 50.000 0.00 0.00 0.00 2.74
2439 2673 1.178276 CCGAGAGTTGGCTAGACAGT 58.822 55.000 0.00 0.00 0.00 3.55
2440 2674 1.133407 GACCGAGAGTTGGCTAGACAG 59.867 57.143 0.00 0.00 0.00 3.51
2441 2675 1.174783 GACCGAGAGTTGGCTAGACA 58.825 55.000 0.00 0.00 0.00 3.41
2442 2676 1.135344 GTGACCGAGAGTTGGCTAGAC 60.135 57.143 0.00 0.00 0.00 2.59
2443 2677 1.174783 GTGACCGAGAGTTGGCTAGA 58.825 55.000 0.00 0.00 0.00 2.43
2444 2678 0.179161 CGTGACCGAGAGTTGGCTAG 60.179 60.000 0.00 0.00 35.63 3.42
2445 2679 0.892358 ACGTGACCGAGAGTTGGCTA 60.892 55.000 0.00 0.00 37.88 3.93
2446 2680 2.143594 GACGTGACCGAGAGTTGGCT 62.144 60.000 0.00 0.00 37.88 4.75
2447 2681 1.733399 GACGTGACCGAGAGTTGGC 60.733 63.158 0.00 0.00 37.88 4.52
2448 2682 0.031585 TTGACGTGACCGAGAGTTGG 59.968 55.000 0.00 0.00 37.88 3.77
2449 2683 1.986378 GATTGACGTGACCGAGAGTTG 59.014 52.381 0.00 0.00 37.88 3.16
2450 2684 1.401148 CGATTGACGTGACCGAGAGTT 60.401 52.381 0.00 0.00 37.88 3.01
2451 2685 0.168348 CGATTGACGTGACCGAGAGT 59.832 55.000 0.00 0.00 37.88 3.24
2452 2686 2.931536 CGATTGACGTGACCGAGAG 58.068 57.895 0.00 0.00 37.88 3.20
2474 2708 2.133281 TATCTGTGCCAAGCATGCTT 57.867 45.000 27.21 27.21 41.91 3.91
2475 2709 1.954382 CATATCTGTGCCAAGCATGCT 59.046 47.619 16.30 16.30 41.91 3.79
2476 2710 1.951602 TCATATCTGTGCCAAGCATGC 59.048 47.619 10.51 10.51 41.91 4.06
2477 2711 2.031069 GCTCATATCTGTGCCAAGCATG 60.031 50.000 0.00 0.00 41.91 4.06
2478 2712 2.228059 GCTCATATCTGTGCCAAGCAT 58.772 47.619 0.00 0.00 41.91 3.79
2479 2713 1.671979 GCTCATATCTGTGCCAAGCA 58.328 50.000 0.00 0.00 36.18 3.91
2485 2719 0.601311 GGTCCGGCTCATATCTGTGC 60.601 60.000 0.00 0.00 40.37 4.57
2486 2720 0.319040 CGGTCCGGCTCATATCTGTG 60.319 60.000 2.34 0.00 0.00 3.66
2487 2721 0.755698 ACGGTCCGGCTCATATCTGT 60.756 55.000 17.28 0.00 0.00 3.41
2488 2722 0.389391 AACGGTCCGGCTCATATCTG 59.611 55.000 17.28 0.00 0.00 2.90
2489 2723 0.674534 GAACGGTCCGGCTCATATCT 59.325 55.000 17.28 0.00 0.00 1.98
2490 2724 0.663568 CGAACGGTCCGGCTCATATC 60.664 60.000 17.28 1.43 0.00 1.63
2491 2725 1.362717 CGAACGGTCCGGCTCATAT 59.637 57.895 17.28 0.00 0.00 1.78
2492 2726 2.802792 CGAACGGTCCGGCTCATA 59.197 61.111 17.28 0.00 0.00 2.15
2493 2727 4.814294 GCGAACGGTCCGGCTCAT 62.814 66.667 17.28 0.00 0.00 2.90
2495 2729 3.346631 TTAGCGAACGGTCCGGCTC 62.347 63.158 17.28 10.71 36.97 4.70
2496 2730 3.376078 TTAGCGAACGGTCCGGCT 61.376 61.111 17.28 16.68 39.44 5.52
2497 2731 3.184003 GTTAGCGAACGGTCCGGC 61.184 66.667 17.28 9.63 0.00 6.13
2498 2732 2.496828 AAGGTTAGCGAACGGTCCGG 62.497 60.000 17.28 0.00 36.32 5.14
2499 2733 1.080298 AAGGTTAGCGAACGGTCCG 60.080 57.895 10.48 10.48 36.32 4.79
2500 2734 0.037975 TCAAGGTTAGCGAACGGTCC 60.038 55.000 3.50 0.00 36.32 4.46
2501 2735 2.005971 ATCAAGGTTAGCGAACGGTC 57.994 50.000 3.50 0.00 36.32 4.79
2502 2736 2.231964 TGTATCAAGGTTAGCGAACGGT 59.768 45.455 3.50 4.11 36.32 4.83
2503 2737 2.883574 TGTATCAAGGTTAGCGAACGG 58.116 47.619 3.50 0.00 36.32 4.44
2504 2738 3.863424 ACATGTATCAAGGTTAGCGAACG 59.137 43.478 0.00 0.00 36.32 3.95
2505 2739 5.447279 CCAACATGTATCAAGGTTAGCGAAC 60.447 44.000 0.00 0.38 34.56 3.95
2506 2740 4.634004 CCAACATGTATCAAGGTTAGCGAA 59.366 41.667 0.00 0.00 0.00 4.70
2507 2741 4.081365 TCCAACATGTATCAAGGTTAGCGA 60.081 41.667 0.00 0.00 0.00 4.93
2508 2742 4.188462 TCCAACATGTATCAAGGTTAGCG 58.812 43.478 0.00 0.00 0.00 4.26
2509 2743 6.699575 AATCCAACATGTATCAAGGTTAGC 57.300 37.500 0.00 0.00 0.00 3.09
2510 2744 8.731275 TGTAATCCAACATGTATCAAGGTTAG 57.269 34.615 0.00 0.00 0.00 2.34
2511 2745 9.521841 TTTGTAATCCAACATGTATCAAGGTTA 57.478 29.630 0.00 0.00 31.20 2.85
2512 2746 8.415950 TTTGTAATCCAACATGTATCAAGGTT 57.584 30.769 0.00 0.00 31.20 3.50
2513 2747 8.415950 TTTTGTAATCCAACATGTATCAAGGT 57.584 30.769 0.00 0.00 31.20 3.50
2514 2748 8.739039 TCTTTTGTAATCCAACATGTATCAAGG 58.261 33.333 0.00 0.00 31.20 3.61
2517 2751 9.295825 ACTTCTTTTGTAATCCAACATGTATCA 57.704 29.630 0.00 0.00 31.20 2.15
2533 2767 9.205719 GCTAGCTAGTAGTTTTACTTCTTTTGT 57.794 33.333 21.62 0.00 40.55 2.83
2534 2768 9.425577 AGCTAGCTAGTAGTTTTACTTCTTTTG 57.574 33.333 17.69 0.00 40.55 2.44
2535 2769 9.642327 GAGCTAGCTAGTAGTTTTACTTCTTTT 57.358 33.333 19.38 0.00 40.55 2.27
2536 2770 9.027202 AGAGCTAGCTAGTAGTTTTACTTCTTT 57.973 33.333 19.38 0.00 40.55 2.52
2537 2771 8.584063 AGAGCTAGCTAGTAGTTTTACTTCTT 57.416 34.615 19.38 0.00 40.55 2.52
2538 2772 7.283807 GGAGAGCTAGCTAGTAGTTTTACTTCT 59.716 40.741 19.38 5.07 40.55 2.85
2539 2773 7.067251 TGGAGAGCTAGCTAGTAGTTTTACTTC 59.933 40.741 19.38 5.66 40.55 3.01
2540 2774 6.890814 TGGAGAGCTAGCTAGTAGTTTTACTT 59.109 38.462 19.38 0.00 40.55 2.24
2541 2775 6.424883 TGGAGAGCTAGCTAGTAGTTTTACT 58.575 40.000 19.38 6.06 42.66 2.24
2542 2776 6.696441 TGGAGAGCTAGCTAGTAGTTTTAC 57.304 41.667 19.38 0.40 0.00 2.01
2543 2777 7.780745 AGATTGGAGAGCTAGCTAGTAGTTTTA 59.219 37.037 19.38 4.42 0.00 1.52
2544 2778 6.609616 AGATTGGAGAGCTAGCTAGTAGTTTT 59.390 38.462 19.38 0.00 0.00 2.43
2545 2779 6.133356 AGATTGGAGAGCTAGCTAGTAGTTT 58.867 40.000 19.38 0.00 0.00 2.66
2546 2780 5.701224 AGATTGGAGAGCTAGCTAGTAGTT 58.299 41.667 19.38 1.49 0.00 2.24
2547 2781 5.073144 AGAGATTGGAGAGCTAGCTAGTAGT 59.927 44.000 19.38 7.32 0.00 2.73
2548 2782 5.560724 AGAGATTGGAGAGCTAGCTAGTAG 58.439 45.833 19.38 0.00 0.00 2.57
2549 2783 5.576563 AGAGATTGGAGAGCTAGCTAGTA 57.423 43.478 19.38 1.51 0.00 1.82
2550 2784 4.453480 AGAGATTGGAGAGCTAGCTAGT 57.547 45.455 19.38 8.16 0.00 2.57
2551 2785 5.560724 AGTAGAGATTGGAGAGCTAGCTAG 58.439 45.833 19.38 16.84 0.00 3.42
2552 2786 5.576563 AGTAGAGATTGGAGAGCTAGCTA 57.423 43.478 19.38 0.97 0.00 3.32
2553 2787 4.453480 AGTAGAGATTGGAGAGCTAGCT 57.547 45.455 19.45 19.45 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.