Multiple sequence alignment - TraesCS5B01G563300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G563300 chr5B 100.000 3386 0 0 1 3386 708963669 708960284 0.000000e+00 6253.0
1 TraesCS5B01G563300 chr5B 73.664 262 44 21 164 405 403540983 403541239 1.010000e-10 78.7
2 TraesCS5B01G563300 chr4A 87.170 2385 127 61 62 2390 606348380 606346119 0.000000e+00 2543.0
3 TraesCS5B01G563300 chr4A 86.239 436 19 19 2739 3152 606345869 606345453 5.190000e-118 435.0
4 TraesCS5B01G563300 chr5D 86.513 1735 109 52 62 1738 564836761 564835094 0.000000e+00 1792.0
5 TraesCS5B01G563300 chr5D 86.041 874 53 33 1715 2559 564835075 564834242 0.000000e+00 874.0
6 TraesCS5B01G563300 chr5D 92.343 431 19 7 2739 3168 564834090 564833673 4.830000e-168 601.0
7 TraesCS5B01G563300 chr5D 85.263 95 4 5 2649 2743 564834190 564834106 4.650000e-14 89.8
8 TraesCS5B01G563300 chr5D 97.436 39 1 0 2337 2375 562062909 562062871 2.180000e-07 67.6
9 TraesCS5B01G563300 chr3A 86.105 439 20 19 2736 3152 744091852 744092271 5.190000e-118 435.0
10 TraesCS5B01G563300 chr1D 80.541 185 31 4 446 629 465884955 465884775 1.640000e-28 137.0
11 TraesCS5B01G563300 chr1D 94.444 54 3 0 2333 2386 191861264 191861317 2.170000e-12 84.2
12 TraesCS5B01G563300 chr2D 78.475 223 32 11 188 409 477784666 477784459 7.620000e-27 132.0
13 TraesCS5B01G563300 chr7A 77.157 197 29 9 447 632 706401800 706401609 2.150000e-17 100.0
14 TraesCS5B01G563300 chr4D 82.759 116 16 2 169 280 432579515 432579400 2.150000e-17 100.0
15 TraesCS5B01G563300 chr7B 77.419 186 29 8 453 629 706361932 706362113 7.730000e-17 99.0
16 TraesCS5B01G563300 chr7D 84.000 100 11 5 534 632 614354470 614354375 1.290000e-14 91.6
17 TraesCS5B01G563300 chr1B 94.444 54 3 0 2333 2386 265648381 265648434 2.170000e-12 84.2
18 TraesCS5B01G563300 chr1A 94.444 54 3 0 2333 2386 237746062 237746115 2.170000e-12 84.2
19 TraesCS5B01G563300 chr6D 100.000 38 0 0 2349 2386 460855442 460855479 1.690000e-08 71.3
20 TraesCS5B01G563300 chr6B 100.000 38 0 0 2349 2386 702385302 702385339 1.690000e-08 71.3
21 TraesCS5B01G563300 chr6A 95.238 42 1 1 2349 2390 607426974 607427014 7.840000e-07 65.8
22 TraesCS5B01G563300 chr5A 87.037 54 4 1 188 238 444260963 444261016 1.310000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G563300 chr5B 708960284 708963669 3385 True 6253.0 6253 100.0000 1 3386 1 chr5B.!!$R1 3385
1 TraesCS5B01G563300 chr4A 606345453 606348380 2927 True 1489.0 2543 86.7045 62 3152 2 chr4A.!!$R1 3090
2 TraesCS5B01G563300 chr5D 564833673 564836761 3088 True 839.2 1792 87.5400 62 3168 4 chr5D.!!$R2 3106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 877 0.251787 TGAGCTGAGCTGACCAGGTA 60.252 55.0 13.71 0.0 41.78 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2714 2903 0.097674 GTCTGCACGATGCCATTGTC 59.902 55.0 0.0 0.0 44.23 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.918067 TTATCAACCAGATATCCGACAGAT 57.082 37.500 0.00 1.46 38.93 2.90
26 27 6.272822 TCAACCAGATATCCGACAGATATG 57.727 41.667 0.00 0.00 46.27 1.78
27 28 5.185828 TCAACCAGATATCCGACAGATATGG 59.814 44.000 0.00 0.00 46.27 2.74
28 29 4.678256 ACCAGATATCCGACAGATATGGT 58.322 43.478 0.00 0.39 46.27 3.55
29 30 5.087323 ACCAGATATCCGACAGATATGGTT 58.913 41.667 0.00 0.00 43.71 3.67
30 31 5.544176 ACCAGATATCCGACAGATATGGTTT 59.456 40.000 0.00 0.00 43.71 3.27
31 32 6.724441 ACCAGATATCCGACAGATATGGTTTA 59.276 38.462 0.00 0.00 43.71 2.01
32 33 7.093727 ACCAGATATCCGACAGATATGGTTTAG 60.094 40.741 0.00 0.00 43.71 1.85
33 34 7.261325 CAGATATCCGACAGATATGGTTTAGG 58.739 42.308 0.00 0.00 46.27 2.69
34 35 6.954684 AGATATCCGACAGATATGGTTTAGGT 59.045 38.462 0.00 0.00 46.27 3.08
35 36 8.114102 AGATATCCGACAGATATGGTTTAGGTA 58.886 37.037 0.00 0.00 46.27 3.08
36 37 6.989155 ATCCGACAGATATGGTTTAGGTAA 57.011 37.500 0.00 0.00 31.60 2.85
37 38 6.152932 TCCGACAGATATGGTTTAGGTAAC 57.847 41.667 0.00 0.00 35.94 2.50
38 39 5.657745 TCCGACAGATATGGTTTAGGTAACA 59.342 40.000 0.00 0.00 38.55 2.41
39 40 6.325545 TCCGACAGATATGGTTTAGGTAACAT 59.674 38.462 0.00 0.00 38.55 2.71
40 41 6.645415 CCGACAGATATGGTTTAGGTAACATC 59.355 42.308 0.00 0.00 38.55 3.06
41 42 6.645415 CGACAGATATGGTTTAGGTAACATCC 59.355 42.308 0.00 0.00 38.55 3.51
42 43 7.446106 ACAGATATGGTTTAGGTAACATCCA 57.554 36.000 0.00 0.00 38.55 3.41
43 44 7.867921 ACAGATATGGTTTAGGTAACATCCAA 58.132 34.615 0.00 0.00 38.55 3.53
44 45 8.502738 ACAGATATGGTTTAGGTAACATCCAAT 58.497 33.333 0.00 0.00 38.55 3.16
45 46 8.786898 CAGATATGGTTTAGGTAACATCCAATG 58.213 37.037 0.00 0.00 38.55 2.82
46 47 7.944554 AGATATGGTTTAGGTAACATCCAATGG 59.055 37.037 0.00 0.00 38.55 3.16
47 48 5.522315 TGGTTTAGGTAACATCCAATGGA 57.478 39.130 3.67 3.67 38.55 3.41
48 49 6.086011 TGGTTTAGGTAACATCCAATGGAT 57.914 37.500 9.36 9.36 44.21 3.41
71 72 8.936864 GGATGTAGATTATCCGGTATTTTCTTG 58.063 37.037 0.00 0.00 35.20 3.02
75 76 9.503399 GTAGATTATCCGGTATTTTCTTGGATT 57.497 33.333 0.00 0.00 39.94 3.01
78 79 9.463443 GATTATCCGGTATTTTCTTGGATTTTG 57.537 33.333 0.00 0.00 39.94 2.44
102 103 7.691213 TGGATCCAAATAAGTGTACCTGTAAA 58.309 34.615 13.46 0.00 0.00 2.01
104 105 8.621286 GGATCCAAATAAGTGTACCTGTAAATG 58.379 37.037 6.95 0.00 0.00 2.32
136 137 6.529829 GCATGAATAAAATTACAGGCGTTTCA 59.470 34.615 0.00 0.00 31.16 2.69
179 188 7.104043 CCATATTGGTGTCATGACTTCAAAT 57.896 36.000 25.55 22.08 31.35 2.32
191 204 5.755409 TGACTTCAAATACTTGGCCTCTA 57.245 39.130 3.32 0.00 33.01 2.43
264 278 7.844009 AGAAATAAAACCATGTCTCATTGCAT 58.156 30.769 0.00 0.00 0.00 3.96
277 291 5.355071 GTCTCATTGCATGTTTGACCTGATA 59.645 40.000 0.00 0.00 0.00 2.15
302 318 2.323213 TTTTTGCTTCCGGTCCGAC 58.677 52.632 14.39 0.00 0.00 4.79
307 323 2.722201 GCTTCCGGTCCGACTCCAT 61.722 63.158 14.39 0.00 0.00 3.41
328 344 4.753516 TTCTATTTCCGCTCTGAATCCA 57.246 40.909 0.00 0.00 0.00 3.41
330 346 5.296151 TCTATTTCCGCTCTGAATCCATT 57.704 39.130 0.00 0.00 0.00 3.16
335 351 4.963318 TCCGCTCTGAATCCATTATCTT 57.037 40.909 0.00 0.00 0.00 2.40
336 352 5.296151 TCCGCTCTGAATCCATTATCTTT 57.704 39.130 0.00 0.00 0.00 2.52
362 378 3.071874 TCCACTTTCAAATCCGCATCT 57.928 42.857 0.00 0.00 0.00 2.90
364 380 2.749076 CCACTTTCAAATCCGCATCTGA 59.251 45.455 0.00 0.00 0.00 3.27
373 389 5.645067 TCAAATCCGCATCTGATCATTATCC 59.355 40.000 0.00 0.00 0.00 2.59
390 406 2.496341 CGCTCAGCTCCGAATCCA 59.504 61.111 0.00 0.00 0.00 3.41
447 475 0.886490 CCATCTACATCCCTTGGCGC 60.886 60.000 0.00 0.00 0.00 6.53
472 500 5.163281 TGATGGCCAATTTAGTTTGCAAT 57.837 34.783 10.96 0.00 0.00 3.56
495 524 8.920665 CAATCACGGCAACTTTTGATATAAAAA 58.079 29.630 0.00 0.00 30.62 1.94
526 555 0.458669 GGATTTGCCATGCTCACCAG 59.541 55.000 0.00 0.00 36.34 4.00
532 561 3.301794 TGCCATGCTCACCAGATAAAT 57.698 42.857 0.00 0.00 0.00 1.40
540 569 6.839124 TGCTCACCAGATAAATTTGACATT 57.161 33.333 0.00 0.00 0.00 2.71
564 593 7.465353 TCTTGAAGAACATAATTTGCCATGA 57.535 32.000 0.00 0.00 0.00 3.07
565 594 7.894708 TCTTGAAGAACATAATTTGCCATGAA 58.105 30.769 0.00 0.00 0.00 2.57
566 595 8.366401 TCTTGAAGAACATAATTTGCCATGAAA 58.634 29.630 0.00 0.00 0.00 2.69
567 596 8.899427 TTGAAGAACATAATTTGCCATGAAAA 57.101 26.923 0.00 0.00 0.00 2.29
568 597 8.899427 TGAAGAACATAATTTGCCATGAAAAA 57.101 26.923 0.00 0.00 0.00 1.94
569 598 8.772705 TGAAGAACATAATTTGCCATGAAAAAC 58.227 29.630 0.00 0.00 0.00 2.43
570 599 7.350110 AGAACATAATTTGCCATGAAAAACG 57.650 32.000 0.00 0.00 0.00 3.60
571 600 6.928492 AGAACATAATTTGCCATGAAAAACGT 59.072 30.769 0.00 0.00 0.00 3.99
572 601 6.464895 ACATAATTTGCCATGAAAAACGTG 57.535 33.333 0.00 0.00 35.47 4.49
573 602 3.876242 AATTTGCCATGAAAAACGTGC 57.124 38.095 0.00 0.00 34.47 5.34
574 603 2.593346 TTTGCCATGAAAAACGTGCT 57.407 40.000 0.00 0.00 34.47 4.40
575 604 3.717400 TTTGCCATGAAAAACGTGCTA 57.283 38.095 0.00 0.00 34.47 3.49
576 605 2.987413 TGCCATGAAAAACGTGCTAG 57.013 45.000 0.00 0.00 34.47 3.42
577 606 2.226330 TGCCATGAAAAACGTGCTAGT 58.774 42.857 0.00 0.00 34.47 2.57
578 607 3.403968 TGCCATGAAAAACGTGCTAGTA 58.596 40.909 0.00 0.00 34.47 1.82
579 608 4.006989 TGCCATGAAAAACGTGCTAGTAT 58.993 39.130 0.00 0.00 34.47 2.12
580 609 4.457603 TGCCATGAAAAACGTGCTAGTATT 59.542 37.500 0.00 0.00 34.47 1.89
581 610 5.048364 TGCCATGAAAAACGTGCTAGTATTT 60.048 36.000 0.00 0.00 34.47 1.40
582 611 5.286082 GCCATGAAAAACGTGCTAGTATTTG 59.714 40.000 0.00 0.00 34.47 2.32
583 612 5.286082 CCATGAAAAACGTGCTAGTATTTGC 59.714 40.000 0.00 0.00 34.47 3.68
584 613 4.789784 TGAAAAACGTGCTAGTATTTGCC 58.210 39.130 0.00 0.00 0.00 4.52
585 614 4.276183 TGAAAAACGTGCTAGTATTTGCCA 59.724 37.500 0.00 0.00 0.00 4.92
586 615 5.048364 TGAAAAACGTGCTAGTATTTGCCAT 60.048 36.000 0.00 0.00 0.00 4.40
587 616 4.355543 AAACGTGCTAGTATTTGCCATG 57.644 40.909 0.00 0.00 0.00 3.66
612 641 0.598065 AAACCTGACGCCAGATTTGC 59.402 50.000 0.00 0.00 43.02 3.68
690 719 6.435430 TTTATGTATGTGGAGTGCAATCAC 57.565 37.500 16.99 12.31 43.44 3.06
692 721 2.305635 TGTATGTGGAGTGCAATCACCT 59.694 45.455 16.99 7.88 44.16 4.00
700 740 3.559171 GGAGTGCAATCACCTCTGGTAAA 60.559 47.826 16.99 0.00 44.16 2.01
715 755 7.977293 ACCTCTGGTAAATTGTAACAAACAAAC 59.023 33.333 0.00 0.00 42.34 2.93
725 765 3.982576 AACAAACAAACTAAGAGCGGG 57.017 42.857 0.00 0.00 0.00 6.13
823 875 1.218585 CTGAGCTGAGCTGACCAGG 59.781 63.158 13.71 0.00 39.88 4.45
824 876 1.534959 TGAGCTGAGCTGACCAGGT 60.535 57.895 13.71 5.38 44.05 4.00
825 877 0.251787 TGAGCTGAGCTGACCAGGTA 60.252 55.000 13.71 0.00 41.78 3.08
830 882 1.402259 CTGAGCTGACCAGGTACTACG 59.598 57.143 0.00 0.00 39.57 3.51
878 930 1.115930 TATGCGCCCTCCTCTTCTCC 61.116 60.000 4.18 0.00 0.00 3.71
945 997 2.300152 TCTTCTTCCTCTCGCAACACAT 59.700 45.455 0.00 0.00 0.00 3.21
950 1004 0.792640 CCTCTCGCAACACATCACAC 59.207 55.000 0.00 0.00 0.00 3.82
1212 1278 3.953775 CAGGGTGTGGAGGGCGTT 61.954 66.667 0.00 0.00 0.00 4.84
1332 1398 4.629523 TTCGTGTCCCCGCCCAAC 62.630 66.667 0.00 0.00 0.00 3.77
1445 1511 1.923204 CGGCGATGACAAGAAGAAGAG 59.077 52.381 0.00 0.00 0.00 2.85
1446 1512 1.663135 GGCGATGACAAGAAGAAGAGC 59.337 52.381 0.00 0.00 0.00 4.09
1454 1520 4.699735 TGACAAGAAGAAGAGCAACAACAA 59.300 37.500 0.00 0.00 0.00 2.83
1493 1559 7.220030 AGATTAGATTTGATCATTAGCACGGT 58.780 34.615 0.00 0.00 0.00 4.83
1519 1587 2.418692 TCAATCAAACGTACGGTGCAT 58.581 42.857 21.06 5.79 0.00 3.96
1529 1597 5.694231 ACGTACGGTGCATGATTAGTATA 57.306 39.130 21.06 0.00 0.00 1.47
1532 1600 5.341462 CGTACGGTGCATGATTAGTATACAC 59.659 44.000 7.57 0.00 0.00 2.90
1536 1604 7.438564 ACGGTGCATGATTAGTATACACATAA 58.561 34.615 5.50 0.00 0.00 1.90
1538 1606 7.411912 CGGTGCATGATTAGTATACACATAAGC 60.412 40.741 5.50 0.00 0.00 3.09
1539 1607 7.604164 GGTGCATGATTAGTATACACATAAGCT 59.396 37.037 5.50 0.00 0.00 3.74
1542 1610 9.208022 GCATGATTAGTATACACATAAGCTTGA 57.792 33.333 9.86 0.00 0.00 3.02
1698 1768 3.444388 TGCATAATTGACTGAGCATGCAA 59.556 39.130 21.98 6.70 44.04 4.08
1699 1769 3.795101 GCATAATTGACTGAGCATGCAAC 59.205 43.478 21.98 13.92 38.84 4.17
1700 1770 4.357142 CATAATTGACTGAGCATGCAACC 58.643 43.478 21.98 9.11 0.00 3.77
1738 1808 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
1739 1809 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
1742 1812 4.406972 TCTCTCTCTCTCTCTCTCTTCCTG 59.593 50.000 0.00 0.00 0.00 3.86
1743 1813 3.118261 TCTCTCTCTCTCTCTCTTCCTGC 60.118 52.174 0.00 0.00 0.00 4.85
1744 1814 2.575735 TCTCTCTCTCTCTCTTCCTGCA 59.424 50.000 0.00 0.00 0.00 4.41
1815 1930 2.050985 GTTGTCGTGCAGCAAGCC 60.051 61.111 3.02 0.00 44.83 4.35
1816 1931 2.515757 TTGTCGTGCAGCAAGCCA 60.516 55.556 3.02 0.00 44.83 4.75
1817 1932 2.545596 TTGTCGTGCAGCAAGCCAG 61.546 57.895 3.02 0.00 44.83 4.85
1818 1933 4.395583 GTCGTGCAGCAAGCCAGC 62.396 66.667 3.02 0.75 44.83 4.85
1819 1934 4.933563 TCGTGCAGCAAGCCAGCA 62.934 61.111 3.02 5.79 44.83 4.41
1820 1935 3.968568 CGTGCAGCAAGCCAGCAA 61.969 61.111 10.68 0.00 44.83 3.91
1821 1936 2.049433 GTGCAGCAAGCCAGCAAG 60.049 61.111 10.68 0.00 44.83 4.01
1822 1937 3.986006 TGCAGCAAGCCAGCAAGC 61.986 61.111 7.23 4.89 44.83 4.01
1856 1978 3.129300 ATGCATGCATGGCTCTGC 58.871 55.556 31.74 14.54 42.62 4.26
1864 1986 1.798735 CATGGCTCTGCAAACCGAG 59.201 57.895 0.00 0.00 0.00 4.63
1876 2003 3.129113 TGCAAACCGAGATGATTGATTGG 59.871 43.478 0.00 0.00 0.00 3.16
1879 2006 1.242076 CCGAGATGATTGATTGGCCC 58.758 55.000 0.00 0.00 0.00 5.80
1893 2020 4.437587 GCCCTGGGTGCTGCATCT 62.438 66.667 15.56 0.00 0.00 2.90
1894 2021 2.439701 CCCTGGGTGCTGCATCTG 60.440 66.667 13.32 8.95 0.00 2.90
1895 2022 3.138798 CCTGGGTGCTGCATCTGC 61.139 66.667 13.32 0.00 42.50 4.26
2074 2239 2.476499 GCGGCGACAAGAAGAAGC 59.524 61.111 12.98 0.00 0.00 3.86
2112 2277 4.097361 GAGGGGGCCGACAAGGTC 62.097 72.222 0.00 0.00 46.15 3.85
2139 2304 4.717313 CAGCAGCAGCAGCAGGGA 62.717 66.667 12.92 0.00 45.49 4.20
2193 2364 0.689623 ACAAGAACAGGCAGGAGGAG 59.310 55.000 0.00 0.00 0.00 3.69
2301 2472 3.798511 GGAGTGGTAGCAGGGGGC 61.799 72.222 0.00 0.00 45.30 5.80
2390 2561 2.390599 GCGCCGTCATGTGATGTGT 61.391 57.895 0.00 0.00 0.00 3.72
2391 2562 1.911293 GCGCCGTCATGTGATGTGTT 61.911 55.000 0.00 0.00 0.00 3.32
2392 2563 0.516877 CGCCGTCATGTGATGTGTTT 59.483 50.000 0.00 0.00 0.00 2.83
2393 2564 1.725611 CGCCGTCATGTGATGTGTTTG 60.726 52.381 0.00 0.00 0.00 2.93
2394 2565 1.266718 GCCGTCATGTGATGTGTTTGT 59.733 47.619 0.00 0.00 0.00 2.83
2396 2568 2.290367 CCGTCATGTGATGTGTTTGTGT 59.710 45.455 0.00 0.00 0.00 3.72
2403 2575 1.470494 TGATGTGTTTGTGTTGCACGT 59.530 42.857 0.00 0.00 37.14 4.49
2441 2620 2.597305 GGTGCATTCGTACTTAGTCGTG 59.403 50.000 0.00 0.00 0.00 4.35
2445 2624 2.995466 TTCGTACTTAGTCGTGGTGG 57.005 50.000 0.00 0.00 0.00 4.61
2462 2641 2.418334 GGTGGTACAGTAGCAAGTAGCC 60.418 54.545 14.08 7.25 42.83 3.93
2464 2643 3.676324 GTGGTACAGTAGCAAGTAGCCAG 60.676 52.174 14.08 0.00 42.83 4.85
2505 2684 1.448985 TACGTACGTACTGGTGGACC 58.551 55.000 23.60 0.00 0.00 4.46
2538 2723 4.994907 TGTATGTATGCACGTAAGGACT 57.005 40.909 0.00 0.00 46.39 3.85
2546 2731 2.289756 TGCACGTAAGGACTATGGCAAA 60.290 45.455 0.00 0.00 46.39 3.68
2553 2738 8.495949 CACGTAAGGACTATGGCAAAATATAAG 58.504 37.037 0.00 0.00 46.39 1.73
2559 2744 8.088981 AGGACTATGGCAAAATATAAGACGTAG 58.911 37.037 0.00 0.00 0.00 3.51
2568 2753 7.623506 GCAAAATATAAGACGTAGTGTTGCAGT 60.624 37.037 0.00 0.00 45.95 4.40
2569 2754 8.865978 CAAAATATAAGACGTAGTGTTGCAGTA 58.134 33.333 0.00 0.00 45.95 2.74
2570 2755 9.595823 AAAATATAAGACGTAGTGTTGCAGTAT 57.404 29.630 0.00 0.00 45.95 2.12
2576 2761 7.194278 AAGACGTAGTGTTGCAGTATATGTAG 58.806 38.462 0.00 0.00 44.33 2.74
2578 2763 5.220381 CGTAGTGTTGCAGTATATGTAGGG 58.780 45.833 0.00 0.00 0.00 3.53
2579 2764 5.221185 CGTAGTGTTGCAGTATATGTAGGGT 60.221 44.000 0.00 0.00 0.00 4.34
2580 2765 5.693769 AGTGTTGCAGTATATGTAGGGTT 57.306 39.130 0.00 0.00 0.00 4.11
2582 2767 7.190335 AGTGTTGCAGTATATGTAGGGTTAA 57.810 36.000 0.00 0.00 0.00 2.01
2583 2768 7.802117 AGTGTTGCAGTATATGTAGGGTTAAT 58.198 34.615 0.00 0.00 0.00 1.40
2584 2769 8.272173 AGTGTTGCAGTATATGTAGGGTTAATT 58.728 33.333 0.00 0.00 0.00 1.40
2585 2770 8.557029 GTGTTGCAGTATATGTAGGGTTAATTC 58.443 37.037 0.00 0.00 0.00 2.17
2586 2771 7.439955 TGTTGCAGTATATGTAGGGTTAATTCG 59.560 37.037 0.00 0.00 0.00 3.34
2588 2773 7.903145 TGCAGTATATGTAGGGTTAATTCGAT 58.097 34.615 0.00 0.00 0.00 3.59
2589 2774 9.027202 TGCAGTATATGTAGGGTTAATTCGATA 57.973 33.333 0.00 0.00 0.00 2.92
2590 2775 9.865321 GCAGTATATGTAGGGTTAATTCGATAA 57.135 33.333 0.00 0.00 0.00 1.75
2596 2781 6.358178 TGTAGGGTTAATTCGATAAATGCCA 58.642 36.000 0.00 0.00 0.00 4.92
2597 2782 5.767816 AGGGTTAATTCGATAAATGCCAC 57.232 39.130 0.00 0.00 0.00 5.01
2601 2786 6.183360 GGGTTAATTCGATAAATGCCACTTGA 60.183 38.462 0.00 0.00 0.00 3.02
2605 2790 7.992180 AATTCGATAAATGCCACTTGAATTC 57.008 32.000 0.00 0.00 31.24 2.17
2606 2791 6.757897 TTCGATAAATGCCACTTGAATTCT 57.242 33.333 7.05 0.00 0.00 2.40
2607 2792 6.122850 TCGATAAATGCCACTTGAATTCTG 57.877 37.500 7.05 2.42 0.00 3.02
2608 2793 5.647658 TCGATAAATGCCACTTGAATTCTGT 59.352 36.000 7.05 3.06 0.00 3.41
2610 2795 3.837213 AATGCCACTTGAATTCTGTCG 57.163 42.857 7.05 0.29 0.00 4.35
2611 2796 2.542020 TGCCACTTGAATTCTGTCGA 57.458 45.000 7.05 0.00 0.00 4.20
2612 2797 2.143122 TGCCACTTGAATTCTGTCGAC 58.857 47.619 9.11 9.11 0.00 4.20
2613 2798 2.224281 TGCCACTTGAATTCTGTCGACT 60.224 45.455 17.92 0.00 0.00 4.18
2614 2799 2.808543 GCCACTTGAATTCTGTCGACTT 59.191 45.455 17.92 1.81 0.00 3.01
2615 2800 3.251004 GCCACTTGAATTCTGTCGACTTT 59.749 43.478 17.92 5.29 0.00 2.66
2616 2801 4.451096 GCCACTTGAATTCTGTCGACTTTA 59.549 41.667 17.92 1.73 0.00 1.85
2617 2802 5.389935 GCCACTTGAATTCTGTCGACTTTAG 60.390 44.000 17.92 6.06 0.00 1.85
2618 2803 5.389935 CCACTTGAATTCTGTCGACTTTAGC 60.390 44.000 17.92 2.76 0.00 3.09
2619 2804 5.406780 CACTTGAATTCTGTCGACTTTAGCT 59.593 40.000 17.92 0.00 0.00 3.32
2620 2805 5.992217 ACTTGAATTCTGTCGACTTTAGCTT 59.008 36.000 17.92 2.95 0.00 3.74
2621 2806 5.845985 TGAATTCTGTCGACTTTAGCTTG 57.154 39.130 17.92 0.00 0.00 4.01
2622 2807 4.690748 TGAATTCTGTCGACTTTAGCTTGG 59.309 41.667 17.92 0.00 0.00 3.61
2623 2808 4.537135 ATTCTGTCGACTTTAGCTTGGA 57.463 40.909 17.92 0.00 0.00 3.53
2624 2809 4.330944 TTCTGTCGACTTTAGCTTGGAA 57.669 40.909 17.92 4.69 0.00 3.53
2625 2810 4.537135 TCTGTCGACTTTAGCTTGGAAT 57.463 40.909 17.92 0.00 0.00 3.01
2626 2811 4.495422 TCTGTCGACTTTAGCTTGGAATC 58.505 43.478 17.92 0.00 0.00 2.52
2627 2812 3.250744 TGTCGACTTTAGCTTGGAATCG 58.749 45.455 17.92 0.00 0.00 3.34
2628 2813 3.057104 TGTCGACTTTAGCTTGGAATCGA 60.057 43.478 17.92 0.00 34.97 3.59
2629 2814 3.303760 GTCGACTTTAGCTTGGAATCGAC 59.696 47.826 18.19 18.19 46.72 4.20
2630 2815 3.057104 TCGACTTTAGCTTGGAATCGACA 60.057 43.478 0.00 0.00 32.61 4.35
2631 2816 3.304559 CGACTTTAGCTTGGAATCGACAG 59.695 47.826 0.00 0.00 0.00 3.51
2632 2817 4.495422 GACTTTAGCTTGGAATCGACAGA 58.505 43.478 0.00 0.00 0.00 3.41
2633 2818 4.894784 ACTTTAGCTTGGAATCGACAGAA 58.105 39.130 0.00 0.00 0.00 3.02
2634 2819 5.491982 ACTTTAGCTTGGAATCGACAGAAT 58.508 37.500 0.00 0.00 0.00 2.40
2635 2820 5.940470 ACTTTAGCTTGGAATCGACAGAATT 59.060 36.000 0.00 0.00 0.00 2.17
2636 2821 6.092807 ACTTTAGCTTGGAATCGACAGAATTC 59.907 38.462 0.00 0.00 0.00 2.17
2637 2822 3.942829 AGCTTGGAATCGACAGAATTCA 58.057 40.909 8.44 0.00 0.00 2.57
2638 2823 4.326826 AGCTTGGAATCGACAGAATTCAA 58.673 39.130 8.44 0.00 0.00 2.69
2639 2824 4.394300 AGCTTGGAATCGACAGAATTCAAG 59.606 41.667 8.44 2.21 35.55 3.02
2640 2825 4.154918 GCTTGGAATCGACAGAATTCAAGT 59.845 41.667 8.44 5.73 35.23 3.16
2641 2826 5.611796 TTGGAATCGACAGAATTCAAGTG 57.388 39.130 8.44 0.00 0.00 3.16
2642 2827 4.002982 TGGAATCGACAGAATTCAAGTGG 58.997 43.478 8.44 7.39 0.00 4.00
2643 2828 3.181506 GGAATCGACAGAATTCAAGTGGC 60.182 47.826 8.44 0.00 0.00 5.01
2644 2829 2.542020 TCGACAGAATTCAAGTGGCA 57.458 45.000 8.44 0.00 0.00 4.92
2645 2830 3.057969 TCGACAGAATTCAAGTGGCAT 57.942 42.857 8.44 0.00 0.00 4.40
2646 2831 3.411446 TCGACAGAATTCAAGTGGCATT 58.589 40.909 8.44 0.00 0.00 3.56
2647 2832 3.820467 TCGACAGAATTCAAGTGGCATTT 59.180 39.130 8.44 0.00 0.00 2.32
2663 2848 9.965824 AAGTGGCATTTATATGTATAAGTTTGC 57.034 29.630 0.00 11.75 33.91 3.68
2666 2851 8.625651 TGGCATTTATATGTATAAGTTTGCGTT 58.374 29.630 12.81 0.00 34.61 4.84
2667 2852 8.901748 GGCATTTATATGTATAAGTTTGCGTTG 58.098 33.333 12.81 0.00 34.61 4.10
2677 2862 0.109039 GTTTGCGTTGTGGTTGGTGT 60.109 50.000 0.00 0.00 0.00 4.16
2714 2903 3.143728 TCCATCGATCAGGCATTCAATG 58.856 45.455 0.00 0.00 0.00 2.82
2915 3139 2.413765 GGGACGCCAGAGATCGAC 59.586 66.667 0.00 0.00 0.00 4.20
2939 3168 2.051579 CTGCAACGTACGATCGACGC 62.052 60.000 27.79 18.23 46.94 5.19
2949 3178 2.202878 ATCGACGCCCATCCAACG 60.203 61.111 0.00 0.00 0.00 4.10
3155 3391 2.941333 CACGCAGAACACAGCAGG 59.059 61.111 0.00 0.00 0.00 4.85
3169 3405 4.263209 CAGGCGCACGCACCAAAA 62.263 61.111 17.69 0.00 44.11 2.44
3170 3406 3.964875 AGGCGCACGCACCAAAAG 61.965 61.111 17.69 0.00 44.11 2.27
3172 3408 4.629115 GCGCACGCACCAAAAGCT 62.629 61.111 10.65 0.00 41.49 3.74
3173 3409 2.427410 CGCACGCACCAAAAGCTC 60.427 61.111 0.00 0.00 0.00 4.09
3174 3410 2.721231 GCACGCACCAAAAGCTCA 59.279 55.556 0.00 0.00 0.00 4.26
3175 3411 1.286880 GCACGCACCAAAAGCTCAT 59.713 52.632 0.00 0.00 0.00 2.90
3176 3412 1.005294 GCACGCACCAAAAGCTCATG 61.005 55.000 0.00 0.00 0.00 3.07
3177 3413 0.592637 CACGCACCAAAAGCTCATGA 59.407 50.000 0.00 0.00 0.00 3.07
3178 3414 0.877071 ACGCACCAAAAGCTCATGAG 59.123 50.000 18.84 18.84 0.00 2.90
3179 3415 0.169672 CGCACCAAAAGCTCATGAGG 59.830 55.000 23.89 9.74 0.00 3.86
3180 3416 1.538047 GCACCAAAAGCTCATGAGGA 58.462 50.000 23.89 0.00 0.00 3.71
3181 3417 1.471684 GCACCAAAAGCTCATGAGGAG 59.528 52.381 23.89 7.13 46.93 3.69
3191 3427 2.244486 TCATGAGGAGAGCCACTTCT 57.756 50.000 0.00 0.00 37.12 2.85
3196 3432 3.694043 GAGGAGAGCCACTTCTCTTTT 57.306 47.619 8.92 0.00 45.31 2.27
3197 3433 3.595173 GAGGAGAGCCACTTCTCTTTTC 58.405 50.000 8.92 0.00 45.31 2.29
3198 3434 3.247162 AGGAGAGCCACTTCTCTTTTCT 58.753 45.455 3.36 0.00 43.05 2.52
3199 3435 3.007831 AGGAGAGCCACTTCTCTTTTCTG 59.992 47.826 3.36 0.00 43.05 3.02
3200 3436 3.244387 GGAGAGCCACTTCTCTTTTCTGT 60.244 47.826 3.36 0.00 43.05 3.41
3201 3437 3.993736 GAGAGCCACTTCTCTTTTCTGTC 59.006 47.826 0.00 0.00 43.05 3.51
3202 3438 2.734079 GAGCCACTTCTCTTTTCTGTCG 59.266 50.000 0.00 0.00 0.00 4.35
3203 3439 2.365617 AGCCACTTCTCTTTTCTGTCGA 59.634 45.455 0.00 0.00 0.00 4.20
3204 3440 2.734079 GCCACTTCTCTTTTCTGTCGAG 59.266 50.000 0.00 0.00 0.00 4.04
3205 3441 3.553096 GCCACTTCTCTTTTCTGTCGAGA 60.553 47.826 0.00 0.00 32.36 4.04
3206 3442 4.815269 CCACTTCTCTTTTCTGTCGAGAT 58.185 43.478 0.00 0.00 34.13 2.75
3207 3443 5.233988 CCACTTCTCTTTTCTGTCGAGATT 58.766 41.667 0.00 0.00 34.13 2.40
3208 3444 5.698545 CCACTTCTCTTTTCTGTCGAGATTT 59.301 40.000 0.00 0.00 34.13 2.17
3209 3445 6.128688 CCACTTCTCTTTTCTGTCGAGATTTC 60.129 42.308 0.00 0.00 34.13 2.17
3210 3446 6.644592 CACTTCTCTTTTCTGTCGAGATTTCT 59.355 38.462 0.00 0.00 34.13 2.52
3211 3447 6.866248 ACTTCTCTTTTCTGTCGAGATTTCTC 59.134 38.462 0.00 0.00 39.55 2.87
3224 3460 4.794169 GAGATTTCTCGGAGCATCTAGAC 58.206 47.826 15.51 4.83 32.78 2.59
3225 3461 3.572255 AGATTTCTCGGAGCATCTAGACC 59.428 47.826 14.47 0.00 33.73 3.85
3226 3462 1.309950 TTCTCGGAGCATCTAGACCG 58.690 55.000 12.15 12.15 45.61 4.79
3227 3463 0.535328 TCTCGGAGCATCTAGACCGG 60.535 60.000 16.82 0.00 44.57 5.28
3228 3464 0.535328 CTCGGAGCATCTAGACCGGA 60.535 60.000 9.46 6.54 44.57 5.14
3229 3465 0.110678 TCGGAGCATCTAGACCGGAT 59.889 55.000 9.46 0.00 44.57 4.18
3230 3466 0.242286 CGGAGCATCTAGACCGGATG 59.758 60.000 9.46 1.12 42.25 3.51
3231 3467 1.333177 GGAGCATCTAGACCGGATGT 58.667 55.000 9.46 0.00 41.63 3.06
3232 3468 1.271102 GGAGCATCTAGACCGGATGTC 59.729 57.143 9.46 0.00 41.63 3.06
3240 3476 3.867723 GACCGGATGTCTCATACCG 57.132 57.895 9.46 0.00 41.03 4.02
3242 3478 4.655527 CGGATGTCTCATACCGGC 57.344 61.111 0.00 0.00 41.41 6.13
3243 3479 1.739667 CGGATGTCTCATACCGGCA 59.260 57.895 0.00 0.00 41.41 5.69
3244 3480 0.597637 CGGATGTCTCATACCGGCAC 60.598 60.000 0.00 0.00 41.41 5.01
3245 3481 0.249911 GGATGTCTCATACCGGCACC 60.250 60.000 0.00 0.00 0.00 5.01
3246 3482 0.464036 GATGTCTCATACCGGCACCA 59.536 55.000 0.00 0.00 0.00 4.17
3247 3483 0.908910 ATGTCTCATACCGGCACCAA 59.091 50.000 0.00 0.00 0.00 3.67
3248 3484 0.687920 TGTCTCATACCGGCACCAAA 59.312 50.000 0.00 0.00 0.00 3.28
3249 3485 1.084289 GTCTCATACCGGCACCAAAC 58.916 55.000 0.00 0.00 0.00 2.93
3250 3486 0.390603 TCTCATACCGGCACCAAACG 60.391 55.000 0.00 0.00 0.00 3.60
3251 3487 1.977594 CTCATACCGGCACCAAACGC 61.978 60.000 0.00 0.00 0.00 4.84
3252 3488 2.038269 CATACCGGCACCAAACGCT 61.038 57.895 0.00 0.00 0.00 5.07
3253 3489 1.743995 ATACCGGCACCAAACGCTC 60.744 57.895 0.00 0.00 0.00 5.03
3256 3492 3.777925 CGGCACCAAACGCTCGAG 61.778 66.667 8.45 8.45 0.00 4.04
3257 3493 2.665185 GGCACCAAACGCTCGAGT 60.665 61.111 15.13 0.00 0.00 4.18
3258 3494 2.551270 GCACCAAACGCTCGAGTG 59.449 61.111 23.98 23.98 0.00 3.51
3259 3495 2.954753 GCACCAAACGCTCGAGTGG 61.955 63.158 28.30 21.94 37.17 4.00
3260 3496 2.665185 ACCAAACGCTCGAGTGGC 60.665 61.111 28.30 8.03 34.27 5.01
3261 3497 2.664851 CCAAACGCTCGAGTGGCA 60.665 61.111 28.30 0.00 0.00 4.92
3262 3498 2.034879 CCAAACGCTCGAGTGGCAT 61.035 57.895 28.30 12.49 0.00 4.40
3263 3499 1.133253 CAAACGCTCGAGTGGCATG 59.867 57.895 28.30 19.17 0.00 4.06
3264 3500 2.680913 AAACGCTCGAGTGGCATGC 61.681 57.895 28.30 9.90 0.00 4.06
3283 3519 2.579201 CGGGCACTACCTGGTCAG 59.421 66.667 0.63 2.14 41.71 3.51
3284 3520 1.982395 CGGGCACTACCTGGTCAGA 60.982 63.158 0.63 0.00 41.71 3.27
3285 3521 1.541310 CGGGCACTACCTGGTCAGAA 61.541 60.000 0.63 0.00 41.71 3.02
3286 3522 0.690762 GGGCACTACCTGGTCAGAAA 59.309 55.000 0.63 0.00 39.10 2.52
3287 3523 1.282157 GGGCACTACCTGGTCAGAAAT 59.718 52.381 0.63 0.00 39.10 2.17
3288 3524 2.290960 GGGCACTACCTGGTCAGAAATT 60.291 50.000 0.63 0.00 39.10 1.82
3289 3525 3.421844 GGCACTACCTGGTCAGAAATTT 58.578 45.455 0.63 0.00 34.51 1.82
3290 3526 4.566907 GGGCACTACCTGGTCAGAAATTTA 60.567 45.833 0.63 0.00 39.10 1.40
3291 3527 4.395231 GGCACTACCTGGTCAGAAATTTAC 59.605 45.833 0.63 0.00 34.51 2.01
3292 3528 4.395231 GCACTACCTGGTCAGAAATTTACC 59.605 45.833 0.63 2.17 0.00 2.85
3293 3529 5.556915 CACTACCTGGTCAGAAATTTACCA 58.443 41.667 0.63 10.24 40.94 3.25
3294 3530 6.180472 CACTACCTGGTCAGAAATTTACCAT 58.820 40.000 10.94 1.94 42.23 3.55
3295 3531 6.316390 CACTACCTGGTCAGAAATTTACCATC 59.684 42.308 10.94 0.00 42.23 3.51
3296 3532 5.520748 ACCTGGTCAGAAATTTACCATCT 57.479 39.130 10.94 0.00 42.23 2.90
3297 3533 5.256474 ACCTGGTCAGAAATTTACCATCTG 58.744 41.667 10.94 5.00 42.23 2.90
3298 3534 4.641989 CCTGGTCAGAAATTTACCATCTGG 59.358 45.833 10.94 6.43 42.23 3.86
3299 3535 4.016444 TGGTCAGAAATTTACCATCTGGC 58.984 43.478 7.14 4.02 43.36 4.85
3300 3536 4.016444 GGTCAGAAATTTACCATCTGGCA 58.984 43.478 10.09 0.00 45.33 4.92
3301 3537 4.462483 GGTCAGAAATTTACCATCTGGCAA 59.538 41.667 10.09 0.00 45.33 4.52
3302 3538 5.047377 GGTCAGAAATTTACCATCTGGCAAA 60.047 40.000 10.09 0.00 45.33 3.68
3303 3539 5.863935 GTCAGAAATTTACCATCTGGCAAAC 59.136 40.000 4.23 0.00 43.52 2.93
3304 3540 5.047377 TCAGAAATTTACCATCTGGCAAACC 60.047 40.000 4.64 0.00 40.71 3.27
3305 3541 4.222810 AGAAATTTACCATCTGGCAAACCC 59.777 41.667 0.00 0.00 33.60 4.11
3306 3542 2.685106 TTTACCATCTGGCAAACCCA 57.315 45.000 0.00 0.00 42.79 4.51
3314 3550 3.548793 TGGCAAACCCAGTCCAAAT 57.451 47.368 0.00 0.00 39.18 2.32
3315 3551 1.047002 TGGCAAACCCAGTCCAAATG 58.953 50.000 0.00 0.00 39.18 2.32
3316 3552 1.047801 GGCAAACCCAGTCCAAATGT 58.952 50.000 0.00 0.00 0.00 2.71
3317 3553 1.000843 GGCAAACCCAGTCCAAATGTC 59.999 52.381 0.00 0.00 0.00 3.06
3318 3554 1.000843 GCAAACCCAGTCCAAATGTCC 59.999 52.381 0.00 0.00 0.00 4.02
3319 3555 1.269448 CAAACCCAGTCCAAATGTCCG 59.731 52.381 0.00 0.00 0.00 4.79
3320 3556 0.251165 AACCCAGTCCAAATGTCCGG 60.251 55.000 0.00 0.00 0.00 5.14
3321 3557 1.131303 ACCCAGTCCAAATGTCCGGA 61.131 55.000 0.00 0.00 0.00 5.14
3325 3561 3.927555 GTCCAAATGTCCGGACTGA 57.072 52.632 33.39 16.65 46.83 3.41
3326 3562 1.439679 GTCCAAATGTCCGGACTGAC 58.560 55.000 33.39 24.61 46.83 3.51
3327 3563 0.323629 TCCAAATGTCCGGACTGACC 59.676 55.000 33.39 9.21 34.25 4.02
3328 3564 0.036164 CCAAATGTCCGGACTGACCA 59.964 55.000 33.39 15.12 38.90 4.02
3329 3565 1.544537 CCAAATGTCCGGACTGACCAA 60.545 52.381 33.39 14.29 38.90 3.67
3330 3566 1.535462 CAAATGTCCGGACTGACCAAC 59.465 52.381 33.39 7.45 38.90 3.77
3331 3567 0.762418 AATGTCCGGACTGACCAACA 59.238 50.000 33.39 13.39 38.01 3.33
3332 3568 0.762418 ATGTCCGGACTGACCAACAA 59.238 50.000 33.39 11.97 37.46 2.83
3333 3569 0.179067 TGTCCGGACTGACCAACAAC 60.179 55.000 33.39 5.32 38.90 3.32
3334 3570 0.883370 GTCCGGACTGACCAACAACC 60.883 60.000 27.64 0.00 38.90 3.77
3335 3571 1.599797 CCGGACTGACCAACAACCC 60.600 63.158 0.00 0.00 38.90 4.11
3336 3572 1.450211 CGGACTGACCAACAACCCT 59.550 57.895 0.00 0.00 38.90 4.34
3337 3573 0.602905 CGGACTGACCAACAACCCTC 60.603 60.000 0.00 0.00 38.90 4.30
3338 3574 0.602905 GGACTGACCAACAACCCTCG 60.603 60.000 0.00 0.00 38.79 4.63
3339 3575 0.106149 GACTGACCAACAACCCTCGT 59.894 55.000 0.00 0.00 0.00 4.18
3340 3576 1.342174 GACTGACCAACAACCCTCGTA 59.658 52.381 0.00 0.00 0.00 3.43
3341 3577 1.069668 ACTGACCAACAACCCTCGTAC 59.930 52.381 0.00 0.00 0.00 3.67
3342 3578 1.343465 CTGACCAACAACCCTCGTACT 59.657 52.381 0.00 0.00 0.00 2.73
3343 3579 1.342174 TGACCAACAACCCTCGTACTC 59.658 52.381 0.00 0.00 0.00 2.59
3344 3580 1.342174 GACCAACAACCCTCGTACTCA 59.658 52.381 0.00 0.00 0.00 3.41
3345 3581 1.343465 ACCAACAACCCTCGTACTCAG 59.657 52.381 0.00 0.00 0.00 3.35
3346 3582 1.429463 CAACAACCCTCGTACTCAGC 58.571 55.000 0.00 0.00 0.00 4.26
3347 3583 0.320697 AACAACCCTCGTACTCAGCC 59.679 55.000 0.00 0.00 0.00 4.85
3348 3584 1.218316 CAACCCTCGTACTCAGCCC 59.782 63.158 0.00 0.00 0.00 5.19
3349 3585 1.078710 AACCCTCGTACTCAGCCCT 59.921 57.895 0.00 0.00 0.00 5.19
3350 3586 0.544595 AACCCTCGTACTCAGCCCTT 60.545 55.000 0.00 0.00 0.00 3.95
3351 3587 0.333993 ACCCTCGTACTCAGCCCTTA 59.666 55.000 0.00 0.00 0.00 2.69
3352 3588 1.063114 ACCCTCGTACTCAGCCCTTAT 60.063 52.381 0.00 0.00 0.00 1.73
3353 3589 1.341531 CCCTCGTACTCAGCCCTTATG 59.658 57.143 0.00 0.00 0.00 1.90
3354 3590 2.032620 CCTCGTACTCAGCCCTTATGT 58.967 52.381 0.00 0.00 0.00 2.29
3355 3591 2.223829 CCTCGTACTCAGCCCTTATGTG 60.224 54.545 0.00 0.00 0.00 3.21
3356 3592 1.136305 TCGTACTCAGCCCTTATGTGC 59.864 52.381 0.00 0.00 0.00 4.57
3357 3593 1.134818 CGTACTCAGCCCTTATGTGCA 60.135 52.381 0.00 0.00 0.00 4.57
3358 3594 2.483714 CGTACTCAGCCCTTATGTGCAT 60.484 50.000 0.00 0.00 0.00 3.96
3359 3595 2.814805 ACTCAGCCCTTATGTGCATT 57.185 45.000 0.00 0.00 0.00 3.56
3360 3596 2.372264 ACTCAGCCCTTATGTGCATTG 58.628 47.619 0.00 0.00 0.00 2.82
3361 3597 1.679680 CTCAGCCCTTATGTGCATTGG 59.320 52.381 0.00 0.00 0.00 3.16
3362 3598 0.103572 CAGCCCTTATGTGCATTGGC 59.896 55.000 0.00 10.23 41.68 4.52
3363 3599 1.066257 GCCCTTATGTGCATTGGCG 59.934 57.895 0.00 0.00 45.35 5.69
3364 3600 1.735360 CCCTTATGTGCATTGGCGG 59.265 57.895 0.00 0.00 45.35 6.13
3365 3601 0.751277 CCCTTATGTGCATTGGCGGA 60.751 55.000 0.00 0.00 45.35 5.54
3366 3602 0.664761 CCTTATGTGCATTGGCGGAG 59.335 55.000 0.00 0.00 45.35 4.63
3379 3615 3.463505 CGGAGCTACGTGTTGCTG 58.536 61.111 11.15 0.00 41.45 4.41
3380 3616 1.080772 CGGAGCTACGTGTTGCTGA 60.081 57.895 11.15 0.00 41.45 4.26
3381 3617 0.666274 CGGAGCTACGTGTTGCTGAA 60.666 55.000 11.15 0.00 41.45 3.02
3382 3618 1.508632 GGAGCTACGTGTTGCTGAAA 58.491 50.000 13.44 0.00 41.45 2.69
3383 3619 1.871039 GGAGCTACGTGTTGCTGAAAA 59.129 47.619 13.44 0.00 41.45 2.29
3384 3620 2.289547 GGAGCTACGTGTTGCTGAAAAA 59.710 45.455 13.44 0.00 41.45 1.94
3385 3621 3.545633 GAGCTACGTGTTGCTGAAAAAG 58.454 45.455 13.44 0.00 41.45 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.918067 ATCTGTCGGATATCTGGTTGATAA 57.082 37.500 11.69 0.00 40.62 1.75
1 2 7.068716 CCATATCTGTCGGATATCTGGTTGATA 59.931 40.741 11.69 14.59 43.52 2.15
2 3 6.127225 CCATATCTGTCGGATATCTGGTTGAT 60.127 42.308 11.69 13.19 43.52 2.57
3 4 5.185828 CCATATCTGTCGGATATCTGGTTGA 59.814 44.000 11.69 7.53 43.52 3.18
4 5 5.047021 ACCATATCTGTCGGATATCTGGTTG 60.047 44.000 16.56 6.11 42.83 3.77
5 6 5.087323 ACCATATCTGTCGGATATCTGGTT 58.913 41.667 16.56 6.11 42.83 3.67
6 7 4.678256 ACCATATCTGTCGGATATCTGGT 58.322 43.478 16.56 16.56 43.52 4.00
7 8 5.667539 AACCATATCTGTCGGATATCTGG 57.332 43.478 15.58 15.58 43.52 3.86
8 9 7.093727 ACCTAAACCATATCTGTCGGATATCTG 60.094 40.741 10.73 5.07 43.52 2.90
9 10 6.954684 ACCTAAACCATATCTGTCGGATATCT 59.045 38.462 10.73 0.00 43.52 1.98
10 11 7.171630 ACCTAAACCATATCTGTCGGATATC 57.828 40.000 10.73 0.00 43.52 1.63
11 12 8.529476 GTTACCTAAACCATATCTGTCGGATAT 58.471 37.037 8.19 8.19 45.52 1.63
12 13 7.506599 TGTTACCTAAACCATATCTGTCGGATA 59.493 37.037 3.80 3.80 37.99 2.59
13 14 6.325545 TGTTACCTAAACCATATCTGTCGGAT 59.674 38.462 0.00 0.00 37.27 4.18
14 15 5.657745 TGTTACCTAAACCATATCTGTCGGA 59.342 40.000 0.00 0.00 37.27 4.55
15 16 5.909477 TGTTACCTAAACCATATCTGTCGG 58.091 41.667 0.00 0.00 37.27 4.79
16 17 6.645415 GGATGTTACCTAAACCATATCTGTCG 59.355 42.308 0.00 0.00 37.27 4.35
17 18 7.506114 TGGATGTTACCTAAACCATATCTGTC 58.494 38.462 0.00 0.00 37.27 3.51
18 19 7.446106 TGGATGTTACCTAAACCATATCTGT 57.554 36.000 0.00 0.00 37.27 3.41
19 20 8.786898 CATTGGATGTTACCTAAACCATATCTG 58.213 37.037 0.00 0.00 37.27 2.90
20 21 7.944554 CCATTGGATGTTACCTAAACCATATCT 59.055 37.037 0.00 0.00 37.27 1.98
21 22 7.942341 TCCATTGGATGTTACCTAAACCATATC 59.058 37.037 0.00 0.00 37.27 1.63
22 23 7.821566 TCCATTGGATGTTACCTAAACCATAT 58.178 34.615 0.00 0.00 37.27 1.78
23 24 7.214460 TCCATTGGATGTTACCTAAACCATA 57.786 36.000 0.00 0.00 37.27 2.74
24 25 6.086011 TCCATTGGATGTTACCTAAACCAT 57.914 37.500 0.00 0.00 37.27 3.55
25 26 5.522315 TCCATTGGATGTTACCTAAACCA 57.478 39.130 0.00 0.00 37.27 3.67
38 39 5.488919 ACCGGATAATCTACATCCATTGGAT 59.511 40.000 9.46 12.62 44.21 3.41
39 40 4.844085 ACCGGATAATCTACATCCATTGGA 59.156 41.667 9.46 8.08 41.87 3.53
40 41 5.165961 ACCGGATAATCTACATCCATTGG 57.834 43.478 9.46 0.00 41.87 3.16
41 42 8.792830 AAATACCGGATAATCTACATCCATTG 57.207 34.615 9.46 0.00 41.87 2.82
42 43 9.449719 GAAAATACCGGATAATCTACATCCATT 57.550 33.333 9.46 0.00 41.87 3.16
43 44 8.826765 AGAAAATACCGGATAATCTACATCCAT 58.173 33.333 9.46 0.00 41.87 3.41
44 45 8.202461 AGAAAATACCGGATAATCTACATCCA 57.798 34.615 9.46 0.00 41.87 3.41
45 46 8.936864 CAAGAAAATACCGGATAATCTACATCC 58.063 37.037 9.46 0.00 38.92 3.51
46 47 8.936864 CCAAGAAAATACCGGATAATCTACATC 58.063 37.037 9.46 0.00 0.00 3.06
47 48 8.656806 TCCAAGAAAATACCGGATAATCTACAT 58.343 33.333 9.46 0.00 0.00 2.29
48 49 8.025270 TCCAAGAAAATACCGGATAATCTACA 57.975 34.615 9.46 0.00 0.00 2.74
49 50 9.503399 AATCCAAGAAAATACCGGATAATCTAC 57.497 33.333 9.46 0.00 35.40 2.59
51 52 8.996651 AAATCCAAGAAAATACCGGATAATCT 57.003 30.769 9.46 1.69 35.40 2.40
52 53 9.463443 CAAAATCCAAGAAAATACCGGATAATC 57.537 33.333 9.46 0.00 35.40 1.75
53 54 8.421002 CCAAAATCCAAGAAAATACCGGATAAT 58.579 33.333 9.46 0.00 35.40 1.28
54 55 7.616150 TCCAAAATCCAAGAAAATACCGGATAA 59.384 33.333 9.46 0.00 35.40 1.75
55 56 7.120051 TCCAAAATCCAAGAAAATACCGGATA 58.880 34.615 9.46 0.00 35.40 2.59
56 57 5.955355 TCCAAAATCCAAGAAAATACCGGAT 59.045 36.000 9.46 0.00 38.11 4.18
57 58 5.326069 TCCAAAATCCAAGAAAATACCGGA 58.674 37.500 9.46 0.00 0.00 5.14
58 59 5.652994 TCCAAAATCCAAGAAAATACCGG 57.347 39.130 0.00 0.00 0.00 5.28
59 60 6.127479 TGGATCCAAAATCCAAGAAAATACCG 60.127 38.462 13.46 0.00 44.54 4.02
60 61 7.181569 TGGATCCAAAATCCAAGAAAATACC 57.818 36.000 13.46 0.00 44.54 2.73
78 79 8.621286 CATTTACAGGTACACTTATTTGGATCC 58.379 37.037 4.20 4.20 0.00 3.36
89 90 9.109393 CATGCTTATAACATTTACAGGTACACT 57.891 33.333 0.00 0.00 0.00 3.55
109 110 6.207691 ACGCCTGTAATTTTATTCATGCTT 57.792 33.333 0.00 0.00 0.00 3.91
179 188 4.161565 CCACATAACACTAGAGGCCAAGTA 59.838 45.833 5.01 0.00 0.00 2.24
289 303 2.240162 AATGGAGTCGGACCGGAAGC 62.240 60.000 15.25 2.37 0.00 3.86
295 311 3.729966 GGAAATAGAATGGAGTCGGACC 58.270 50.000 4.14 0.00 0.00 4.46
302 318 4.327982 TCAGAGCGGAAATAGAATGGAG 57.672 45.455 0.00 0.00 0.00 3.86
307 323 4.753516 TGGATTCAGAGCGGAAATAGAA 57.246 40.909 0.00 0.00 0.00 2.10
335 351 6.516718 TGCGGATTTGAAAGTGGATTTTAAA 58.483 32.000 0.00 0.00 39.72 1.52
336 352 6.090483 TGCGGATTTGAAAGTGGATTTTAA 57.910 33.333 0.00 0.00 0.00 1.52
347 363 5.840243 AATGATCAGATGCGGATTTGAAA 57.160 34.783 13.99 6.46 0.00 2.69
354 370 2.675032 GCGGATAATGATCAGATGCGGA 60.675 50.000 25.41 0.00 35.28 5.54
362 378 2.028658 GGAGCTGAGCGGATAATGATCA 60.029 50.000 0.00 0.00 33.27 2.92
364 380 1.067283 CGGAGCTGAGCGGATAATGAT 60.067 52.381 0.00 0.00 0.00 2.45
373 389 1.153568 TTGGATTCGGAGCTGAGCG 60.154 57.895 0.00 0.00 0.00 5.03
399 415 7.362834 CGGATTGGATAATGCTTTTGCCATATA 60.363 37.037 6.66 0.00 46.87 0.86
420 448 3.796111 AGGGATGTAGATGGATCGGATT 58.204 45.455 0.00 0.00 0.00 3.01
447 475 3.798337 GCAAACTAAATTGGCCATCATCG 59.202 43.478 6.09 0.00 0.00 3.84
457 485 3.986572 TGCCGTGATTGCAAACTAAATTG 59.013 39.130 1.71 0.00 35.40 2.32
472 500 8.300286 TCATTTTTATATCAAAAGTTGCCGTGA 58.700 29.630 1.65 0.00 0.00 4.35
495 524 5.163478 GCATGGCAAATCCTTCTTAGTTCAT 60.163 40.000 0.00 0.00 35.26 2.57
506 535 0.040058 TGGTGAGCATGGCAAATCCT 59.960 50.000 0.00 0.00 35.26 3.24
540 569 7.465353 TCATGGCAAATTATGTTCTTCAAGA 57.535 32.000 0.00 0.00 0.00 3.02
564 593 4.839668 TGGCAAATACTAGCACGTTTTT 57.160 36.364 0.00 0.00 0.00 1.94
565 594 4.380444 CCATGGCAAATACTAGCACGTTTT 60.380 41.667 0.00 0.00 0.00 2.43
566 595 3.128589 CCATGGCAAATACTAGCACGTTT 59.871 43.478 0.00 0.00 0.00 3.60
567 596 2.682856 CCATGGCAAATACTAGCACGTT 59.317 45.455 0.00 0.00 0.00 3.99
568 597 2.288666 CCATGGCAAATACTAGCACGT 58.711 47.619 0.00 0.00 0.00 4.49
569 598 2.287915 GACCATGGCAAATACTAGCACG 59.712 50.000 13.04 0.00 0.00 5.34
570 599 3.278574 TGACCATGGCAAATACTAGCAC 58.721 45.455 13.04 0.00 0.00 4.40
571 600 3.643199 TGACCATGGCAAATACTAGCA 57.357 42.857 13.04 0.00 0.00 3.49
572 601 4.981806 TTTGACCATGGCAAATACTAGC 57.018 40.909 22.50 0.00 30.87 3.42
599 628 0.955428 TCCACTGCAAATCTGGCGTC 60.955 55.000 0.00 0.00 0.00 5.19
603 632 1.004044 AGGACTCCACTGCAAATCTGG 59.996 52.381 0.00 0.00 0.00 3.86
690 719 8.194769 AGTTTGTTTGTTACAATTTACCAGAGG 58.805 33.333 0.00 0.00 45.72 3.69
700 740 6.435428 CCGCTCTTAGTTTGTTTGTTACAAT 58.565 36.000 0.00 0.00 45.72 2.71
715 755 4.623002 GAATCTTTCTACCCCGCTCTTAG 58.377 47.826 0.00 0.00 0.00 2.18
725 765 2.877043 TACGCCCGAATCTTTCTACC 57.123 50.000 0.00 0.00 0.00 3.18
811 863 1.003928 TCGTAGTACCTGGTCAGCTCA 59.996 52.381 0.63 0.00 0.00 4.26
816 868 1.442769 GTCGTCGTAGTACCTGGTCA 58.557 55.000 0.63 0.00 0.00 4.02
819 871 0.371645 GTCGTCGTCGTAGTACCTGG 59.628 60.000 1.33 0.00 38.33 4.45
823 875 1.461127 ACTTGGTCGTCGTCGTAGTAC 59.539 52.381 1.33 0.00 38.33 2.73
824 876 1.726791 GACTTGGTCGTCGTCGTAGTA 59.273 52.381 1.33 0.00 38.33 1.82
825 877 0.514691 GACTTGGTCGTCGTCGTAGT 59.485 55.000 1.33 2.39 38.33 2.73
830 882 1.577328 TACGGGACTTGGTCGTCGTC 61.577 60.000 16.05 0.00 40.88 4.20
891 943 3.966543 CGGAGGTTGGGTTGGGCT 61.967 66.667 0.00 0.00 0.00 5.19
892 944 3.282374 ATCGGAGGTTGGGTTGGGC 62.282 63.158 0.00 0.00 0.00 5.36
893 945 1.077716 GATCGGAGGTTGGGTTGGG 60.078 63.158 0.00 0.00 0.00 4.12
894 946 1.077716 GGATCGGAGGTTGGGTTGG 60.078 63.158 0.00 0.00 0.00 3.77
895 947 0.255890 ATGGATCGGAGGTTGGGTTG 59.744 55.000 0.00 0.00 0.00 3.77
945 997 1.425267 CGTGGTTGTTCTGCGTGTGA 61.425 55.000 0.00 0.00 0.00 3.58
950 1004 0.782384 GTACTCGTGGTTGTTCTGCG 59.218 55.000 0.00 0.00 0.00 5.18
1016 1073 1.746991 CCCTCTTTCTCCTTGGCGC 60.747 63.158 0.00 0.00 0.00 6.53
1164 1230 3.423154 GCCTTGACGACCTTGCGG 61.423 66.667 0.00 0.00 35.12 5.69
1273 1339 2.490217 CTCGACGCGGTCCTTGAT 59.510 61.111 12.47 0.00 0.00 2.57
1332 1398 1.228862 CTTCTTGGGGTTGGGTGGG 60.229 63.158 0.00 0.00 0.00 4.61
1335 1401 1.529744 TCTTCTTCTTGGGGTTGGGT 58.470 50.000 0.00 0.00 0.00 4.51
1380 1446 2.747855 GCCTGACCCTTCTTGCCG 60.748 66.667 0.00 0.00 0.00 5.69
1445 1511 1.748493 TCACCTCCTTGTTGTTGTTGC 59.252 47.619 0.00 0.00 0.00 4.17
1446 1512 4.654091 AATCACCTCCTTGTTGTTGTTG 57.346 40.909 0.00 0.00 0.00 3.33
1454 1520 8.772250 TCAAATCTAATCTAATCACCTCCTTGT 58.228 33.333 0.00 0.00 0.00 3.16
1493 1559 3.251245 ACCGTACGTTTGATTGATTGCAA 59.749 39.130 15.21 0.00 38.60 4.08
1496 1562 3.160545 GCACCGTACGTTTGATTGATTG 58.839 45.455 15.21 0.00 0.00 2.67
1519 1587 9.208022 GCATCAAGCTTATGTGTATACTAATCA 57.792 33.333 0.00 0.00 41.15 2.57
1529 1597 3.021695 AGCATGCATCAAGCTTATGTGT 58.978 40.909 21.98 0.00 45.94 3.72
1532 1600 5.161358 CCATTAGCATGCATCAAGCTTATG 58.839 41.667 21.98 20.91 41.57 1.90
1536 1604 2.361119 CACCATTAGCATGCATCAAGCT 59.639 45.455 21.98 13.81 45.94 3.74
1538 1606 2.691526 ACCACCATTAGCATGCATCAAG 59.308 45.455 21.98 7.98 0.00 3.02
1539 1607 2.737544 ACCACCATTAGCATGCATCAA 58.262 42.857 21.98 11.07 0.00 2.57
1542 1610 3.902218 ACTAACCACCATTAGCATGCAT 58.098 40.909 21.98 7.68 35.86 3.96
1543 1611 3.364460 ACTAACCACCATTAGCATGCA 57.636 42.857 21.98 0.00 35.86 3.96
1544 1612 4.082245 ACAAACTAACCACCATTAGCATGC 60.082 41.667 10.51 10.51 35.86 4.06
1698 1768 4.855230 AGTGGGTGGGTGGGTGGT 62.855 66.667 0.00 0.00 0.00 4.16
1699 1769 3.966543 GAGTGGGTGGGTGGGTGG 61.967 72.222 0.00 0.00 0.00 4.61
1700 1770 2.854032 AGAGTGGGTGGGTGGGTG 60.854 66.667 0.00 0.00 0.00 4.61
1738 1808 1.203441 ATGGCAGGAAGAGTGCAGGA 61.203 55.000 0.00 0.00 43.12 3.86
1739 1809 1.030488 CATGGCAGGAAGAGTGCAGG 61.030 60.000 0.00 0.00 43.12 4.85
1742 1812 1.035932 ATGCATGGCAGGAAGAGTGC 61.036 55.000 1.99 0.94 43.65 4.40
1743 1813 0.738975 CATGCATGGCAGGAAGAGTG 59.261 55.000 19.40 0.00 43.36 3.51
1744 1814 0.395311 CCATGCATGGCAGGAAGAGT 60.395 55.000 31.95 0.00 43.36 3.24
1781 1896 5.351465 ACGACAACTCCATGAATGAATGTAC 59.649 40.000 0.00 0.00 0.00 2.90
1782 1897 5.351189 CACGACAACTCCATGAATGAATGTA 59.649 40.000 0.00 0.00 0.00 2.29
1783 1898 4.154737 CACGACAACTCCATGAATGAATGT 59.845 41.667 0.00 0.00 0.00 2.71
1846 1961 0.674581 TCTCGGTTTGCAGAGCCATG 60.675 55.000 0.27 0.00 36.96 3.66
1847 1962 0.254178 ATCTCGGTTTGCAGAGCCAT 59.746 50.000 0.27 0.00 36.96 4.40
1850 1972 1.661341 ATCATCTCGGTTTGCAGAGC 58.339 50.000 0.00 0.00 36.96 4.09
1852 1974 3.333029 TCAATCATCTCGGTTTGCAGA 57.667 42.857 0.00 0.00 0.00 4.26
1856 1978 3.489738 GGCCAATCAATCATCTCGGTTTG 60.490 47.826 0.00 0.00 0.00 2.93
1860 1982 1.202855 AGGGCCAATCAATCATCTCGG 60.203 52.381 6.18 0.00 0.00 4.63
1864 1986 1.335145 CCCAGGGCCAATCAATCATC 58.665 55.000 6.18 0.00 0.00 2.92
1876 2003 4.437587 AGATGCAGCACCCAGGGC 62.438 66.667 4.91 0.00 0.00 5.19
1896 2023 2.330440 TCACGCCTACATGCATTCAT 57.670 45.000 0.00 0.00 0.00 2.57
1897 2024 2.009051 CTTCACGCCTACATGCATTCA 58.991 47.619 0.00 0.00 0.00 2.57
1898 2025 1.331756 CCTTCACGCCTACATGCATTC 59.668 52.381 0.00 0.00 0.00 2.67
1899 2026 1.065491 TCCTTCACGCCTACATGCATT 60.065 47.619 0.00 0.00 0.00 3.56
1900 2027 0.541392 TCCTTCACGCCTACATGCAT 59.459 50.000 0.00 0.00 0.00 3.96
1901 2028 0.108186 CTCCTTCACGCCTACATGCA 60.108 55.000 0.00 0.00 0.00 3.96
1902 2029 0.811616 CCTCCTTCACGCCTACATGC 60.812 60.000 0.00 0.00 0.00 4.06
1903 2030 0.537188 ACCTCCTTCACGCCTACATG 59.463 55.000 0.00 0.00 0.00 3.21
2041 2176 2.325082 CGCCGTCCTTGTTCTTGGG 61.325 63.158 0.00 0.00 0.00 4.12
2065 2230 2.152830 CTTCTGCTGCTGCTTCTTCTT 58.847 47.619 17.00 0.00 40.48 2.52
2066 2231 1.611148 CCTTCTGCTGCTGCTTCTTCT 60.611 52.381 17.00 0.00 40.48 2.85
2067 2232 0.803740 CCTTCTGCTGCTGCTTCTTC 59.196 55.000 17.00 0.00 40.48 2.87
2074 2239 3.123620 GCCGTCCTTCTGCTGCTG 61.124 66.667 0.00 0.00 0.00 4.41
2244 2415 0.388006 CGCCGTACATCATCGCCATA 60.388 55.000 0.00 0.00 0.00 2.74
2403 2575 2.746904 GCACCACTAACACACATGCATA 59.253 45.455 0.00 0.00 0.00 3.14
2413 2585 3.671008 AGTACGAATGCACCACTAACA 57.329 42.857 0.00 0.00 0.00 2.41
2441 2620 2.418334 GGCTACTTGCTACTGTACCACC 60.418 54.545 0.00 0.00 42.39 4.61
2445 2624 2.166664 AGCTGGCTACTTGCTACTGTAC 59.833 50.000 0.00 0.00 42.39 2.90
2464 2643 8.516234 ACGTAATATATAGGCATAGCTGATAGC 58.484 37.037 0.00 0.00 42.84 2.97
2467 2646 8.504815 CGTACGTAATATATAGGCATAGCTGAT 58.495 37.037 7.22 0.00 0.00 2.90
2468 2647 7.496920 ACGTACGTAATATATAGGCATAGCTGA 59.503 37.037 21.41 0.00 0.00 4.26
2469 2648 7.637229 ACGTACGTAATATATAGGCATAGCTG 58.363 38.462 21.41 0.00 0.00 4.24
2473 2652 9.045223 CCAGTACGTACGTAATATATAGGCATA 57.955 37.037 28.34 1.45 31.86 3.14
2505 2684 1.227342 TACATACATGCATGCGCCCG 61.227 55.000 26.53 12.79 37.32 6.13
2507 2686 2.251869 CATACATACATGCATGCGCC 57.748 50.000 26.53 0.00 37.32 6.53
2519 2704 5.566032 GCCATAGTCCTTACGTGCATACATA 60.566 44.000 0.00 0.00 0.00 2.29
2535 2720 8.700644 CACTACGTCTTATATTTTGCCATAGTC 58.299 37.037 0.00 0.00 0.00 2.59
2538 2723 8.822855 CAACACTACGTCTTATATTTTGCCATA 58.177 33.333 0.00 0.00 0.00 2.74
2553 2738 5.913514 CCTACATATACTGCAACACTACGTC 59.086 44.000 0.00 0.00 0.00 4.34
2559 2744 8.446599 AATTAACCCTACATATACTGCAACAC 57.553 34.615 0.00 0.00 0.00 3.32
2563 2748 7.292713 TCGAATTAACCCTACATATACTGCA 57.707 36.000 0.00 0.00 0.00 4.41
2569 2754 9.174166 GGCATTTATCGAATTAACCCTACATAT 57.826 33.333 0.00 0.00 0.00 1.78
2570 2755 8.158132 TGGCATTTATCGAATTAACCCTACATA 58.842 33.333 0.00 0.00 0.00 2.29
2572 2757 6.261381 GTGGCATTTATCGAATTAACCCTACA 59.739 38.462 0.00 0.00 0.00 2.74
2576 2761 5.767816 AGTGGCATTTATCGAATTAACCC 57.232 39.130 0.00 0.00 0.00 4.11
2578 2763 8.856490 ATTCAAGTGGCATTTATCGAATTAAC 57.144 30.769 0.00 0.00 0.00 2.01
2579 2764 9.515020 GAATTCAAGTGGCATTTATCGAATTAA 57.485 29.630 14.94 0.00 33.31 1.40
2580 2765 8.902806 AGAATTCAAGTGGCATTTATCGAATTA 58.097 29.630 14.94 0.00 33.31 1.40
2582 2767 7.148018 ACAGAATTCAAGTGGCATTTATCGAAT 60.148 33.333 8.44 0.00 0.00 3.34
2583 2768 6.150976 ACAGAATTCAAGTGGCATTTATCGAA 59.849 34.615 8.44 0.00 0.00 3.71
2584 2769 5.647658 ACAGAATTCAAGTGGCATTTATCGA 59.352 36.000 8.44 0.00 0.00 3.59
2585 2770 5.883661 ACAGAATTCAAGTGGCATTTATCG 58.116 37.500 8.44 0.00 0.00 2.92
2586 2771 5.967674 CGACAGAATTCAAGTGGCATTTATC 59.032 40.000 8.44 0.00 0.00 1.75
2588 2773 5.000591 TCGACAGAATTCAAGTGGCATTTA 58.999 37.500 8.44 0.00 0.00 1.40
2589 2774 3.820467 TCGACAGAATTCAAGTGGCATTT 59.180 39.130 8.44 0.00 0.00 2.32
2590 2775 3.189287 GTCGACAGAATTCAAGTGGCATT 59.811 43.478 11.55 0.00 0.00 3.56
2591 2776 2.744202 GTCGACAGAATTCAAGTGGCAT 59.256 45.455 11.55 0.00 0.00 4.40
2592 2777 2.143122 GTCGACAGAATTCAAGTGGCA 58.857 47.619 11.55 0.00 0.00 4.92
2593 2778 2.417719 AGTCGACAGAATTCAAGTGGC 58.582 47.619 19.50 0.00 0.00 5.01
2594 2779 5.389935 GCTAAAGTCGACAGAATTCAAGTGG 60.390 44.000 19.50 7.39 33.08 4.00
2596 2781 5.542779 AGCTAAAGTCGACAGAATTCAAGT 58.457 37.500 19.50 5.73 33.08 3.16
2597 2782 6.302615 CAAGCTAAAGTCGACAGAATTCAAG 58.697 40.000 19.50 5.90 33.08 3.02
2601 2786 4.894784 TCCAAGCTAAAGTCGACAGAATT 58.105 39.130 19.50 9.46 36.08 2.17
2605 2790 3.304559 CGATTCCAAGCTAAAGTCGACAG 59.695 47.826 19.50 7.71 0.00 3.51
2606 2791 3.057104 TCGATTCCAAGCTAAAGTCGACA 60.057 43.478 19.50 0.00 32.48 4.35
2607 2792 3.303760 GTCGATTCCAAGCTAAAGTCGAC 59.696 47.826 18.30 18.30 45.97 4.20
2608 2793 3.057104 TGTCGATTCCAAGCTAAAGTCGA 60.057 43.478 6.47 6.47 34.69 4.20
2610 2795 4.495422 TCTGTCGATTCCAAGCTAAAGTC 58.505 43.478 0.00 0.00 0.00 3.01
2611 2796 4.537135 TCTGTCGATTCCAAGCTAAAGT 57.463 40.909 0.00 0.00 0.00 2.66
2612 2797 6.092670 TGAATTCTGTCGATTCCAAGCTAAAG 59.907 38.462 7.05 0.00 0.00 1.85
2613 2798 5.937540 TGAATTCTGTCGATTCCAAGCTAAA 59.062 36.000 7.05 0.00 0.00 1.85
2614 2799 5.487433 TGAATTCTGTCGATTCCAAGCTAA 58.513 37.500 7.05 0.00 0.00 3.09
2615 2800 5.084818 TGAATTCTGTCGATTCCAAGCTA 57.915 39.130 7.05 0.00 0.00 3.32
2616 2801 3.942829 TGAATTCTGTCGATTCCAAGCT 58.057 40.909 7.05 0.00 0.00 3.74
2617 2802 4.154918 ACTTGAATTCTGTCGATTCCAAGC 59.845 41.667 7.05 0.00 0.00 4.01
2618 2803 5.391310 CCACTTGAATTCTGTCGATTCCAAG 60.391 44.000 7.05 0.00 0.00 3.61
2619 2804 4.455533 CCACTTGAATTCTGTCGATTCCAA 59.544 41.667 7.05 0.00 0.00 3.53
2620 2805 4.002982 CCACTTGAATTCTGTCGATTCCA 58.997 43.478 7.05 0.00 0.00 3.53
2621 2806 3.181506 GCCACTTGAATTCTGTCGATTCC 60.182 47.826 7.05 0.00 0.00 3.01
2622 2807 3.436704 TGCCACTTGAATTCTGTCGATTC 59.563 43.478 7.05 0.00 0.00 2.52
2623 2808 3.411446 TGCCACTTGAATTCTGTCGATT 58.589 40.909 7.05 0.00 0.00 3.34
2624 2809 3.057969 TGCCACTTGAATTCTGTCGAT 57.942 42.857 7.05 0.00 0.00 3.59
2625 2810 2.542020 TGCCACTTGAATTCTGTCGA 57.458 45.000 7.05 0.00 0.00 4.20
2626 2811 3.837213 AATGCCACTTGAATTCTGTCG 57.163 42.857 7.05 0.29 0.00 4.35
2627 2812 8.408601 ACATATAAATGCCACTTGAATTCTGTC 58.591 33.333 7.05 0.00 36.50 3.51
2628 2813 8.297470 ACATATAAATGCCACTTGAATTCTGT 57.703 30.769 7.05 3.06 36.50 3.41
2637 2822 9.965824 GCAAACTTATACATATAAATGCCACTT 57.034 29.630 10.06 0.00 36.50 3.16
2638 2823 8.289618 CGCAAACTTATACATATAAATGCCACT 58.710 33.333 13.02 0.00 36.50 4.00
2639 2824 8.073768 ACGCAAACTTATACATATAAATGCCAC 58.926 33.333 13.02 0.00 36.50 5.01
2640 2825 8.160521 ACGCAAACTTATACATATAAATGCCA 57.839 30.769 13.02 0.00 36.50 4.92
2641 2826 8.901748 CAACGCAAACTTATACATATAAATGCC 58.098 33.333 13.02 3.33 36.50 4.40
2642 2827 9.445786 ACAACGCAAACTTATACATATAAATGC 57.554 29.630 10.67 10.67 36.50 3.56
2644 2829 9.944663 CCACAACGCAAACTTATACATATAAAT 57.055 29.630 0.00 0.00 0.00 1.40
2645 2830 8.948145 ACCACAACGCAAACTTATACATATAAA 58.052 29.630 0.00 0.00 0.00 1.40
2646 2831 8.495361 ACCACAACGCAAACTTATACATATAA 57.505 30.769 0.00 0.00 0.00 0.98
2647 2832 8.391859 CAACCACAACGCAAACTTATACATATA 58.608 33.333 0.00 0.00 0.00 0.86
2663 2848 1.084935 TCGTGACACCAACCACAACG 61.085 55.000 0.00 0.00 33.13 4.10
2666 2851 1.134371 TGAATCGTGACACCAACCACA 60.134 47.619 0.00 0.00 33.13 4.17
2667 2852 1.588674 TGAATCGTGACACCAACCAC 58.411 50.000 0.00 0.00 0.00 4.16
2703 2888 2.181125 TGCCATTGTCATTGAATGCCT 58.819 42.857 0.00 0.00 30.66 4.75
2714 2903 0.097674 GTCTGCACGATGCCATTGTC 59.902 55.000 0.00 0.00 44.23 3.18
2907 3131 0.802607 GTTGCAGGTCGGTCGATCTC 60.803 60.000 2.87 0.57 32.47 2.75
2915 3139 1.138047 GATCGTACGTTGCAGGTCGG 61.138 60.000 16.05 0.29 0.00 4.79
2951 3180 1.375013 ATTGACGGGTGGTACGTGC 60.375 57.895 0.00 0.00 45.68 5.34
3155 3391 4.629115 AGCTTTTGGTGCGTGCGC 62.629 61.111 9.85 9.85 42.35 6.09
3171 3407 2.101249 GAGAAGTGGCTCTCCTCATGAG 59.899 54.545 16.24 16.24 42.90 2.90
3172 3408 2.106566 GAGAAGTGGCTCTCCTCATGA 58.893 52.381 0.00 0.00 36.60 3.07
3173 3409 2.109774 AGAGAAGTGGCTCTCCTCATG 58.890 52.381 5.61 0.00 41.24 3.07
3174 3410 2.548464 AGAGAAGTGGCTCTCCTCAT 57.452 50.000 5.61 0.00 41.24 2.90
3175 3411 2.317371 AAGAGAAGTGGCTCTCCTCA 57.683 50.000 5.61 0.00 44.18 3.86
3176 3412 3.260632 AGAAAAGAGAAGTGGCTCTCCTC 59.739 47.826 0.00 0.00 44.18 3.71
3177 3413 3.007831 CAGAAAAGAGAAGTGGCTCTCCT 59.992 47.826 0.00 0.00 44.18 3.69
3178 3414 3.244387 ACAGAAAAGAGAAGTGGCTCTCC 60.244 47.826 0.00 0.00 44.18 3.71
3179 3415 3.993736 GACAGAAAAGAGAAGTGGCTCTC 59.006 47.826 0.00 0.00 44.18 3.20
3180 3416 3.553922 CGACAGAAAAGAGAAGTGGCTCT 60.554 47.826 0.00 0.00 46.81 4.09
3181 3417 2.734079 CGACAGAAAAGAGAAGTGGCTC 59.266 50.000 0.00 0.00 35.11 4.70
3182 3418 2.365617 TCGACAGAAAAGAGAAGTGGCT 59.634 45.455 0.00 0.00 0.00 4.75
3183 3419 2.734079 CTCGACAGAAAAGAGAAGTGGC 59.266 50.000 0.00 0.00 34.13 5.01
3184 3420 4.244425 TCTCGACAGAAAAGAGAAGTGG 57.756 45.455 0.00 0.00 38.00 4.00
3185 3421 6.644592 AGAAATCTCGACAGAAAAGAGAAGTG 59.355 38.462 0.00 0.00 43.24 3.16
3186 3422 6.754193 AGAAATCTCGACAGAAAAGAGAAGT 58.246 36.000 0.00 0.00 43.24 3.01
3187 3423 7.276953 GAGAAATCTCGACAGAAAAGAGAAG 57.723 40.000 0.00 0.00 43.24 2.85
3202 3438 4.320935 GGTCTAGATGCTCCGAGAAATCTC 60.321 50.000 14.23 0.15 39.55 2.75
3203 3439 3.572255 GGTCTAGATGCTCCGAGAAATCT 59.428 47.826 14.88 14.88 33.96 2.40
3204 3440 3.610585 CGGTCTAGATGCTCCGAGAAATC 60.611 52.174 12.88 1.72 44.86 2.17
3205 3441 2.294791 CGGTCTAGATGCTCCGAGAAAT 59.705 50.000 12.88 0.00 44.86 2.17
3206 3442 1.676529 CGGTCTAGATGCTCCGAGAAA 59.323 52.381 12.88 0.00 44.86 2.52
3207 3443 1.309950 CGGTCTAGATGCTCCGAGAA 58.690 55.000 12.88 0.00 44.86 2.87
3208 3444 0.535328 CCGGTCTAGATGCTCCGAGA 60.535 60.000 18.35 0.00 44.86 4.04
3209 3445 0.535328 TCCGGTCTAGATGCTCCGAG 60.535 60.000 18.35 10.14 44.86 4.63
3210 3446 0.110678 ATCCGGTCTAGATGCTCCGA 59.889 55.000 18.35 7.36 44.86 4.55
3211 3447 0.242286 CATCCGGTCTAGATGCTCCG 59.758 60.000 11.55 11.55 42.22 4.63
3212 3448 1.271102 GACATCCGGTCTAGATGCTCC 59.729 57.143 0.00 0.00 44.08 4.70
3213 3449 2.715737 GACATCCGGTCTAGATGCTC 57.284 55.000 0.00 0.00 44.08 4.26
3225 3461 0.597637 GTGCCGGTATGAGACATCCG 60.598 60.000 1.90 0.00 42.22 4.18
3226 3462 0.249911 GGTGCCGGTATGAGACATCC 60.250 60.000 1.90 0.00 0.00 3.51
3227 3463 0.464036 TGGTGCCGGTATGAGACATC 59.536 55.000 1.90 0.00 0.00 3.06
3228 3464 0.908910 TTGGTGCCGGTATGAGACAT 59.091 50.000 1.90 0.00 0.00 3.06
3229 3465 0.687920 TTTGGTGCCGGTATGAGACA 59.312 50.000 1.90 0.00 0.00 3.41
3230 3466 1.084289 GTTTGGTGCCGGTATGAGAC 58.916 55.000 1.90 0.00 0.00 3.36
3231 3467 0.390603 CGTTTGGTGCCGGTATGAGA 60.391 55.000 1.90 0.00 0.00 3.27
3232 3468 1.977594 GCGTTTGGTGCCGGTATGAG 61.978 60.000 1.90 0.00 0.00 2.90
3233 3469 2.036006 GCGTTTGGTGCCGGTATGA 61.036 57.895 1.90 0.00 0.00 2.15
3234 3470 1.977594 GAGCGTTTGGTGCCGGTATG 61.978 60.000 1.90 0.00 34.58 2.39
3235 3471 1.743995 GAGCGTTTGGTGCCGGTAT 60.744 57.895 1.90 0.00 34.58 2.73
3236 3472 2.357760 GAGCGTTTGGTGCCGGTA 60.358 61.111 1.90 0.00 34.58 4.02
3239 3475 3.777925 CTCGAGCGTTTGGTGCCG 61.778 66.667 0.00 0.00 0.00 5.69
3240 3476 2.665185 ACTCGAGCGTTTGGTGCC 60.665 61.111 13.61 0.00 0.00 5.01
3241 3477 2.551270 CACTCGAGCGTTTGGTGC 59.449 61.111 13.61 0.00 0.00 5.01
3242 3478 2.954753 GCCACTCGAGCGTTTGGTG 61.955 63.158 13.61 1.68 0.00 4.17
3243 3479 2.665185 GCCACTCGAGCGTTTGGT 60.665 61.111 13.61 0.00 0.00 3.67
3244 3480 2.034879 ATGCCACTCGAGCGTTTGG 61.035 57.895 13.61 13.83 0.00 3.28
3245 3481 1.133253 CATGCCACTCGAGCGTTTG 59.867 57.895 13.61 2.74 0.00 2.93
3246 3482 2.680913 GCATGCCACTCGAGCGTTT 61.681 57.895 13.61 0.00 0.00 3.60
3247 3483 3.121030 GCATGCCACTCGAGCGTT 61.121 61.111 13.61 0.00 0.00 4.84
3264 3500 3.782443 GACCAGGTAGTGCCCGGG 61.782 72.222 19.09 19.09 44.57 5.73
3265 3501 3.000819 TGACCAGGTAGTGCCCGG 61.001 66.667 0.00 0.00 38.26 5.73
3266 3502 1.541310 TTCTGACCAGGTAGTGCCCG 61.541 60.000 0.00 0.00 38.26 6.13
3267 3503 0.690762 TTTCTGACCAGGTAGTGCCC 59.309 55.000 0.00 0.00 38.26 5.36
3268 3504 2.789409 ATTTCTGACCAGGTAGTGCC 57.211 50.000 0.00 0.00 37.58 5.01
3269 3505 4.395231 GGTAAATTTCTGACCAGGTAGTGC 59.605 45.833 0.00 0.00 33.16 4.40
3270 3506 5.556915 TGGTAAATTTCTGACCAGGTAGTG 58.443 41.667 7.14 0.00 38.34 2.74
3271 3507 5.836024 TGGTAAATTTCTGACCAGGTAGT 57.164 39.130 7.14 0.00 38.34 2.73
3272 3508 6.540189 CAGATGGTAAATTTCTGACCAGGTAG 59.460 42.308 14.87 4.09 46.11 3.18
3273 3509 6.414732 CAGATGGTAAATTTCTGACCAGGTA 58.585 40.000 14.87 0.00 46.11 3.08
3274 3510 5.256474 CAGATGGTAAATTTCTGACCAGGT 58.744 41.667 14.87 0.00 46.11 4.00
3275 3511 4.641989 CCAGATGGTAAATTTCTGACCAGG 59.358 45.833 14.87 8.53 46.11 4.45
3276 3512 4.096984 GCCAGATGGTAAATTTCTGACCAG 59.903 45.833 14.87 4.90 46.11 4.00
3277 3513 4.016444 GCCAGATGGTAAATTTCTGACCA 58.984 43.478 12.57 12.57 46.92 4.02
3278 3514 4.016444 TGCCAGATGGTAAATTTCTGACC 58.984 43.478 5.79 4.01 39.36 4.02
3279 3515 5.643379 TTGCCAGATGGTAAATTTCTGAC 57.357 39.130 5.79 0.00 39.36 3.51
3287 3523 2.158385 ACTGGGTTTGCCAGATGGTAAA 60.158 45.455 10.61 10.61 45.38 2.01
3288 3524 1.427368 ACTGGGTTTGCCAGATGGTAA 59.573 47.619 0.00 0.00 38.03 2.85
3289 3525 1.004277 GACTGGGTTTGCCAGATGGTA 59.996 52.381 0.00 0.00 38.52 3.25
3290 3526 0.251341 GACTGGGTTTGCCAGATGGT 60.251 55.000 0.00 0.00 38.52 3.55
3291 3527 0.967380 GGACTGGGTTTGCCAGATGG 60.967 60.000 0.00 0.00 38.52 3.51
3292 3528 0.251297 TGGACTGGGTTTGCCAGATG 60.251 55.000 0.00 0.00 38.52 2.90
3293 3529 0.482446 TTGGACTGGGTTTGCCAGAT 59.518 50.000 0.00 0.00 38.52 2.90
3294 3530 0.260230 TTTGGACTGGGTTTGCCAGA 59.740 50.000 0.00 0.00 38.52 3.86
3295 3531 1.001181 CATTTGGACTGGGTTTGCCAG 59.999 52.381 0.00 0.00 40.72 4.85
3296 3532 1.047002 CATTTGGACTGGGTTTGCCA 58.953 50.000 0.00 0.00 36.17 4.92
3297 3533 1.000843 GACATTTGGACTGGGTTTGCC 59.999 52.381 0.00 0.00 0.00 4.52
3298 3534 1.000843 GGACATTTGGACTGGGTTTGC 59.999 52.381 0.00 0.00 0.00 3.68
3299 3535 1.269448 CGGACATTTGGACTGGGTTTG 59.731 52.381 0.00 0.00 0.00 2.93
3300 3536 1.616159 CGGACATTTGGACTGGGTTT 58.384 50.000 0.00 0.00 0.00 3.27
3301 3537 0.251165 CCGGACATTTGGACTGGGTT 60.251 55.000 0.00 0.00 0.00 4.11
3302 3538 1.131303 TCCGGACATTTGGACTGGGT 61.131 55.000 0.00 0.00 0.00 4.51
3303 3539 1.682849 TCCGGACATTTGGACTGGG 59.317 57.895 0.00 0.00 0.00 4.45
3308 3544 0.323629 GGTCAGTCCGGACATTTGGA 59.676 55.000 35.00 20.30 39.59 3.53
3309 3545 0.036164 TGGTCAGTCCGGACATTTGG 59.964 55.000 35.00 18.46 39.59 3.28
3310 3546 1.535462 GTTGGTCAGTCCGGACATTTG 59.465 52.381 35.00 24.33 39.59 2.32
3311 3547 1.142060 TGTTGGTCAGTCCGGACATTT 59.858 47.619 35.00 13.48 39.59 2.32
3312 3548 0.762418 TGTTGGTCAGTCCGGACATT 59.238 50.000 35.00 14.29 39.59 2.71
3313 3549 0.762418 TTGTTGGTCAGTCCGGACAT 59.238 50.000 35.00 18.04 39.59 3.06
3314 3550 0.179067 GTTGTTGGTCAGTCCGGACA 60.179 55.000 35.00 14.29 39.59 4.02
3315 3551 0.883370 GGTTGTTGGTCAGTCCGGAC 60.883 60.000 27.67 27.67 39.52 4.79
3316 3552 1.448497 GGTTGTTGGTCAGTCCGGA 59.552 57.895 0.00 0.00 39.52 5.14
3317 3553 1.599797 GGGTTGTTGGTCAGTCCGG 60.600 63.158 0.00 0.00 39.52 5.14
3318 3554 0.602905 GAGGGTTGTTGGTCAGTCCG 60.603 60.000 0.00 0.00 39.52 4.79
3319 3555 0.602905 CGAGGGTTGTTGGTCAGTCC 60.603 60.000 0.00 0.00 0.00 3.85
3320 3556 0.106149 ACGAGGGTTGTTGGTCAGTC 59.894 55.000 0.00 0.00 0.00 3.51
3321 3557 1.069668 GTACGAGGGTTGTTGGTCAGT 59.930 52.381 0.00 0.00 0.00 3.41
3322 3558 1.343465 AGTACGAGGGTTGTTGGTCAG 59.657 52.381 0.00 0.00 0.00 3.51
3323 3559 1.342174 GAGTACGAGGGTTGTTGGTCA 59.658 52.381 0.00 0.00 0.00 4.02
3324 3560 1.342174 TGAGTACGAGGGTTGTTGGTC 59.658 52.381 0.00 0.00 0.00 4.02
3325 3561 1.343465 CTGAGTACGAGGGTTGTTGGT 59.657 52.381 0.00 0.00 0.00 3.67
3326 3562 1.939838 GCTGAGTACGAGGGTTGTTGG 60.940 57.143 0.00 0.00 0.00 3.77
3327 3563 1.429463 GCTGAGTACGAGGGTTGTTG 58.571 55.000 0.00 0.00 0.00 3.33
3328 3564 0.320697 GGCTGAGTACGAGGGTTGTT 59.679 55.000 0.00 0.00 0.00 2.83
3329 3565 1.542187 GGGCTGAGTACGAGGGTTGT 61.542 60.000 0.00 0.00 0.00 3.32
3330 3566 1.218316 GGGCTGAGTACGAGGGTTG 59.782 63.158 0.00 0.00 0.00 3.77
3331 3567 0.544595 AAGGGCTGAGTACGAGGGTT 60.545 55.000 0.00 0.00 0.00 4.11
3332 3568 0.333993 TAAGGGCTGAGTACGAGGGT 59.666 55.000 0.00 0.00 0.00 4.34
3333 3569 1.341531 CATAAGGGCTGAGTACGAGGG 59.658 57.143 0.00 0.00 0.00 4.30
3334 3570 2.032620 ACATAAGGGCTGAGTACGAGG 58.967 52.381 0.00 0.00 0.00 4.63
3335 3571 2.799917 GCACATAAGGGCTGAGTACGAG 60.800 54.545 0.00 0.00 0.00 4.18
3336 3572 1.136305 GCACATAAGGGCTGAGTACGA 59.864 52.381 0.00 0.00 0.00 3.43
3337 3573 1.134818 TGCACATAAGGGCTGAGTACG 60.135 52.381 0.00 0.00 0.00 3.67
3338 3574 2.691409 TGCACATAAGGGCTGAGTAC 57.309 50.000 0.00 0.00 0.00 2.73
3339 3575 3.544684 CAATGCACATAAGGGCTGAGTA 58.455 45.455 0.00 0.00 0.00 2.59
3340 3576 2.372264 CAATGCACATAAGGGCTGAGT 58.628 47.619 0.00 0.00 0.00 3.41
3341 3577 1.679680 CCAATGCACATAAGGGCTGAG 59.320 52.381 0.00 0.00 0.00 3.35
3342 3578 1.766494 CCAATGCACATAAGGGCTGA 58.234 50.000 0.00 0.00 0.00 4.26
3343 3579 0.103572 GCCAATGCACATAAGGGCTG 59.896 55.000 11.51 0.00 38.37 4.85
3344 3580 1.386525 CGCCAATGCACATAAGGGCT 61.387 55.000 14.89 0.00 39.23 5.19
3345 3581 1.066257 CGCCAATGCACATAAGGGC 59.934 57.895 9.60 9.60 37.32 5.19
3346 3582 0.751277 TCCGCCAATGCACATAAGGG 60.751 55.000 0.00 0.00 37.32 3.95
3347 3583 0.664761 CTCCGCCAATGCACATAAGG 59.335 55.000 0.00 0.00 37.32 2.69
3348 3584 0.029834 GCTCCGCCAATGCACATAAG 59.970 55.000 0.00 0.00 37.32 1.73
3349 3585 0.394216 AGCTCCGCCAATGCACATAA 60.394 50.000 0.00 0.00 37.32 1.90
3350 3586 0.467804 TAGCTCCGCCAATGCACATA 59.532 50.000 0.00 0.00 37.32 2.29
3351 3587 1.097547 GTAGCTCCGCCAATGCACAT 61.098 55.000 0.00 0.00 37.32 3.21
3352 3588 1.745115 GTAGCTCCGCCAATGCACA 60.745 57.895 0.00 0.00 37.32 4.57
3353 3589 2.813179 CGTAGCTCCGCCAATGCAC 61.813 63.158 0.00 0.00 37.32 4.57
3354 3590 2.511373 CGTAGCTCCGCCAATGCA 60.511 61.111 0.00 0.00 37.32 3.96
3355 3591 2.511600 ACGTAGCTCCGCCAATGC 60.512 61.111 0.00 0.00 0.00 3.56
3356 3592 1.019278 AACACGTAGCTCCGCCAATG 61.019 55.000 0.00 0.00 0.00 2.82
3357 3593 1.019278 CAACACGTAGCTCCGCCAAT 61.019 55.000 0.00 0.00 0.00 3.16
3358 3594 1.666553 CAACACGTAGCTCCGCCAA 60.667 57.895 0.00 0.00 0.00 4.52
3359 3595 2.048597 CAACACGTAGCTCCGCCA 60.049 61.111 0.00 0.00 0.00 5.69
3360 3596 3.488090 GCAACACGTAGCTCCGCC 61.488 66.667 0.00 0.00 0.00 6.13
3361 3597 2.432628 AGCAACACGTAGCTCCGC 60.433 61.111 0.00 0.00 36.00 5.54
3362 3598 0.666274 TTCAGCAACACGTAGCTCCG 60.666 55.000 0.00 0.00 39.50 4.63
3363 3599 1.508632 TTTCAGCAACACGTAGCTCC 58.491 50.000 6.38 0.00 39.50 4.70
3364 3600 3.545633 CTTTTTCAGCAACACGTAGCTC 58.454 45.455 6.38 0.00 39.50 4.09
3365 3601 3.609103 CTTTTTCAGCAACACGTAGCT 57.391 42.857 3.76 3.76 42.94 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.