Multiple sequence alignment - TraesCS5B01G561700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G561700 chr5B 100.000 5715 0 0 1 5715 707890186 707895900 0.000000e+00 10554.0
1 TraesCS5B01G561700 chr5B 88.273 776 70 8 4893 5650 71644567 71643795 0.000000e+00 909.0
2 TraesCS5B01G561700 chr5B 79.399 898 147 18 2406 3294 356186586 356187454 2.950000e-167 599.0
3 TraesCS5B01G561700 chr5B 85.644 404 33 19 1991 2375 71645246 71644849 8.920000e-108 401.0
4 TraesCS5B01G561700 chr2B 98.428 5088 59 6 648 5715 775596882 775601968 0.000000e+00 8933.0
5 TraesCS5B01G561700 chr2B 74.352 1583 225 82 653 2116 655630888 655632408 1.840000e-139 507.0
6 TraesCS5B01G561700 chr2B 85.106 141 16 4 2563 2699 175537425 175537286 7.720000e-29 139.0
7 TraesCS5B01G561700 chr2B 84.127 126 17 2 408 533 16816792 16816914 1.010000e-22 119.0
8 TraesCS5B01G561700 chr4A 85.986 2419 323 12 2658 5069 729041392 729043801 0.000000e+00 2575.0
9 TraesCS5B01G561700 chr4A 83.333 96 14 2 529 623 603334594 603334500 2.840000e-13 87.9
10 TraesCS5B01G561700 chr3A 85.479 1763 162 38 678 2375 636821305 636823038 0.000000e+00 1751.0
11 TraesCS5B01G561700 chr3A 85.782 844 78 17 4893 5715 62444447 62445269 0.000000e+00 856.0
12 TraesCS5B01G561700 chr3A 87.047 772 70 16 4964 5715 636824354 636825115 0.000000e+00 845.0
13 TraesCS5B01G561700 chr3A 87.034 617 53 18 1778 2375 62443559 62444167 0.000000e+00 671.0
14 TraesCS5B01G561700 chr3A 92.727 220 13 1 1556 1775 62438539 62438755 1.200000e-81 315.0
15 TraesCS5B01G561700 chr3A 77.593 241 45 7 2415 2650 416166128 416165892 2.780000e-28 137.0
16 TraesCS5B01G561700 chr3A 90.476 63 6 0 655 717 636821243 636821305 3.670000e-12 84.2
17 TraesCS5B01G561700 chr2D 85.058 1807 167 33 636 2375 520506756 520504986 0.000000e+00 1746.0
18 TraesCS5B01G561700 chr2D 88.273 776 70 8 4893 5650 520504704 520503932 0.000000e+00 909.0
19 TraesCS5B01G561700 chr2D 88.406 138 14 2 2563 2699 122702563 122702427 1.270000e-36 165.0
20 TraesCS5B01G561700 chr1A 87.550 1253 151 5 2658 3906 1201364 1202615 0.000000e+00 1445.0
21 TraesCS5B01G561700 chr1A 83.237 173 23 5 2450 2617 537535537 537535366 2.760000e-33 154.0
22 TraesCS5B01G561700 chr3B 83.612 1196 111 32 1229 2375 597051156 597052315 0.000000e+00 1044.0
23 TraesCS5B01G561700 chr3B 79.522 962 160 18 3970 4926 787987732 787986803 0.000000e+00 651.0
24 TraesCS5B01G561700 chr3B 87.972 424 34 3 4924 5333 597057554 597057974 8.610000e-133 484.0
25 TraesCS5B01G561700 chr3B 91.875 160 13 0 652 811 597050977 597051136 2.070000e-54 224.0
26 TraesCS5B01G561700 chr2A 83.886 1055 119 15 902 1923 625939078 625940114 0.000000e+00 959.0
27 TraesCS5B01G561700 chr2A 97.111 450 13 0 3051 3500 625953041 625953490 0.000000e+00 760.0
28 TraesCS5B01G561700 chr2A 88.754 329 19 6 5107 5421 625953489 625953813 2.500000e-103 387.0
29 TraesCS5B01G561700 chr2A 89.447 199 15 4 2153 2348 625952772 625952967 4.420000e-61 246.0
30 TraesCS5B01G561700 chr2A 86.096 187 21 5 647 831 625938524 625938707 4.520000e-46 196.0
31 TraesCS5B01G561700 chr2A 78.351 194 40 2 427 619 424444713 424444905 2.160000e-24 124.0
32 TraesCS5B01G561700 chr2A 84.615 104 12 3 5612 5715 625954093 625954192 3.640000e-17 100.0
33 TraesCS5B01G561700 chr5A 86.639 711 71 15 5021 5715 490034915 490035617 0.000000e+00 765.0
34 TraesCS5B01G561700 chr5A 90.070 574 41 6 2374 2931 490034327 490034900 0.000000e+00 730.0
35 TraesCS5B01G561700 chr5A 85.923 547 64 4 655 1190 490033185 490033729 6.420000e-159 571.0
36 TraesCS5B01G561700 chr5A 92.093 215 11 4 2162 2375 490033799 490034008 1.200000e-76 298.0
37 TraesCS5B01G561700 chr1B 86.498 711 71 16 5021 5715 454928513 454929214 0.000000e+00 758.0
38 TraesCS5B01G561700 chr1B 90.070 574 41 6 2374 2931 454927925 454928498 0.000000e+00 730.0
39 TraesCS5B01G561700 chr1B 85.923 547 64 4 655 1190 454926783 454927327 6.420000e-159 571.0
40 TraesCS5B01G561700 chr1B 92.093 215 11 4 2162 2375 454927397 454927606 1.200000e-76 298.0
41 TraesCS5B01G561700 chrUn 79.143 700 114 22 2406 3097 274275923 274275248 6.750000e-124 455.0
42 TraesCS5B01G561700 chr1D 84.511 368 54 3 5221 5586 89601734 89601368 1.510000e-95 361.0
43 TraesCS5B01G561700 chr1D 78.774 212 40 4 412 619 465779866 465779656 2.780000e-28 137.0
44 TraesCS5B01G561700 chr5D 84.746 177 22 4 444 619 288178828 288178656 7.610000e-39 172.0
45 TraesCS5B01G561700 chr7B 78.125 224 40 7 2432 2650 327254462 327254681 3.590000e-27 134.0
46 TraesCS5B01G561700 chr3D 79.470 151 29 2 466 616 98598333 98598185 7.830000e-19 106.0
47 TraesCS5B01G561700 chr4B 79.339 121 24 1 499 619 622898925 622898806 3.670000e-12 84.2
48 TraesCS5B01G561700 chr6D 100.000 28 0 0 592 619 411769854 411769881 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G561700 chr5B 707890186 707895900 5714 False 10554.00 10554 100.000000 1 5715 1 chr5B.!!$F2 5714
1 TraesCS5B01G561700 chr5B 71643795 71645246 1451 True 655.00 909 86.958500 1991 5650 2 chr5B.!!$R1 3659
2 TraesCS5B01G561700 chr5B 356186586 356187454 868 False 599.00 599 79.399000 2406 3294 1 chr5B.!!$F1 888
3 TraesCS5B01G561700 chr2B 775596882 775601968 5086 False 8933.00 8933 98.428000 648 5715 1 chr2B.!!$F3 5067
4 TraesCS5B01G561700 chr2B 655630888 655632408 1520 False 507.00 507 74.352000 653 2116 1 chr2B.!!$F2 1463
5 TraesCS5B01G561700 chr4A 729041392 729043801 2409 False 2575.00 2575 85.986000 2658 5069 1 chr4A.!!$F1 2411
6 TraesCS5B01G561700 chr3A 636821243 636825115 3872 False 893.40 1751 87.667333 655 5715 3 chr3A.!!$F3 5060
7 TraesCS5B01G561700 chr3A 62443559 62445269 1710 False 763.50 856 86.408000 1778 5715 2 chr3A.!!$F2 3937
8 TraesCS5B01G561700 chr2D 520503932 520506756 2824 True 1327.50 1746 86.665500 636 5650 2 chr2D.!!$R2 5014
9 TraesCS5B01G561700 chr1A 1201364 1202615 1251 False 1445.00 1445 87.550000 2658 3906 1 chr1A.!!$F1 1248
10 TraesCS5B01G561700 chr3B 787986803 787987732 929 True 651.00 651 79.522000 3970 4926 1 chr3B.!!$R1 956
11 TraesCS5B01G561700 chr3B 597050977 597052315 1338 False 634.00 1044 87.743500 652 2375 2 chr3B.!!$F2 1723
12 TraesCS5B01G561700 chr2A 625938524 625940114 1590 False 577.50 959 84.991000 647 1923 2 chr2A.!!$F2 1276
13 TraesCS5B01G561700 chr2A 625952772 625954192 1420 False 373.25 760 89.981750 2153 5715 4 chr2A.!!$F3 3562
14 TraesCS5B01G561700 chr5A 490033185 490035617 2432 False 591.00 765 88.681250 655 5715 4 chr5A.!!$F1 5060
15 TraesCS5B01G561700 chr1B 454926783 454929214 2431 False 589.25 758 88.646000 655 5715 4 chr1B.!!$F1 5060
16 TraesCS5B01G561700 chrUn 274275248 274275923 675 True 455.00 455 79.143000 2406 3097 1 chrUn.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.107312 GCATGTGCATGTCTCCCTCT 60.107 55.000 12.96 0.0 40.80 3.69 F
110 111 0.109723 ACCAGCGTTAACCCACATGT 59.890 50.000 0.00 0.0 0.00 3.21 F
347 348 0.313043 TATTGCGGGCTCTAGCGTAC 59.687 55.000 0.00 0.0 43.26 3.67 F
351 352 0.383231 GCGGGCTCTAGCGTACTAAA 59.617 55.000 0.00 0.0 43.26 1.85 F
623 624 0.391597 TGGAACGGAGGAAGTGTGTC 59.608 55.000 0.00 0.0 0.00 3.67 F
624 625 0.680061 GGAACGGAGGAAGTGTGTCT 59.320 55.000 0.00 0.0 0.00 3.41 F
950 1293 1.202348 GCAATCTAGAGAGCTGTCGCA 60.202 52.381 5.05 0.0 39.10 5.10 F
3331 4164 1.609208 CACAAAAGGGTGGACCAGAG 58.391 55.000 0.00 0.0 43.89 3.35 F
3924 4757 2.359967 GGGGTTCAGAGACTCCGGG 61.360 68.421 0.00 0.0 28.77 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1335 1722 0.473755 ATCACCACAGCTGGACACAA 59.526 50.000 19.93 0.00 40.55 3.33 R
1791 2218 1.889170 CAAACAAAGAGGCCCCTTCTC 59.111 52.381 0.00 0.00 0.00 2.87 R
2285 2770 6.092122 TGTTAGTCAAACATTATTGAGCCTCG 59.908 38.462 0.00 0.00 43.22 4.63 R
2975 3807 1.912971 GTACACCACCATCCCCCTC 59.087 63.158 0.00 0.00 0.00 4.30 R
3331 4164 4.094294 TCACGCTTACTGCAACCAATATTC 59.906 41.667 0.00 0.00 43.06 1.75 R
3345 4178 9.422196 GACAATAATTCTGTAAATCACGCTTAC 57.578 33.333 0.00 0.00 0.00 2.34 R
3709 4542 1.541588 GCAACACCTCCCATTGACTTC 59.458 52.381 0.00 0.00 0.00 3.01 R
4301 5135 1.233019 CTATCCCTTGCGGCAATCAG 58.767 55.000 16.80 4.41 0.00 2.90 R
5163 6969 1.524848 CATGCTGGGCAAAAATGCAA 58.475 45.000 2.97 0.00 43.62 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.651867 GCATGTGCATGTCTCCCT 57.348 55.556 12.96 0.00 40.80 4.20
22 23 2.401967 GCATGTGCATGTCTCCCTC 58.598 57.895 12.96 0.00 40.80 4.30
23 24 0.107312 GCATGTGCATGTCTCCCTCT 60.107 55.000 12.96 0.00 40.80 3.69
24 25 1.139654 GCATGTGCATGTCTCCCTCTA 59.860 52.381 12.96 0.00 40.80 2.43
25 26 2.224475 GCATGTGCATGTCTCCCTCTAT 60.224 50.000 12.96 0.00 40.80 1.98
26 27 3.400255 CATGTGCATGTCTCCCTCTATG 58.600 50.000 4.13 0.00 34.23 2.23
27 28 2.470990 TGTGCATGTCTCCCTCTATGT 58.529 47.619 0.00 0.00 0.00 2.29
28 29 2.169144 TGTGCATGTCTCCCTCTATGTG 59.831 50.000 0.00 0.00 0.00 3.21
29 30 1.139654 TGCATGTCTCCCTCTATGTGC 59.860 52.381 0.00 0.00 0.00 4.57
30 31 1.542108 GCATGTCTCCCTCTATGTGCC 60.542 57.143 0.00 0.00 0.00 5.01
31 32 1.764723 CATGTCTCCCTCTATGTGCCA 59.235 52.381 0.00 0.00 0.00 4.92
32 33 1.489481 TGTCTCCCTCTATGTGCCAG 58.511 55.000 0.00 0.00 0.00 4.85
33 34 1.273267 TGTCTCCCTCTATGTGCCAGT 60.273 52.381 0.00 0.00 0.00 4.00
34 35 1.410882 GTCTCCCTCTATGTGCCAGTC 59.589 57.143 0.00 0.00 0.00 3.51
35 36 1.289231 TCTCCCTCTATGTGCCAGTCT 59.711 52.381 0.00 0.00 0.00 3.24
36 37 1.411977 CTCCCTCTATGTGCCAGTCTG 59.588 57.143 0.00 0.00 0.00 3.51
37 38 0.179062 CCCTCTATGTGCCAGTCTGC 60.179 60.000 0.00 0.00 0.00 4.26
38 39 0.829333 CCTCTATGTGCCAGTCTGCT 59.171 55.000 0.00 0.00 0.00 4.24
39 40 1.202510 CCTCTATGTGCCAGTCTGCTC 60.203 57.143 0.00 0.00 0.00 4.26
40 41 1.755959 CTCTATGTGCCAGTCTGCTCT 59.244 52.381 0.00 0.00 0.00 4.09
41 42 2.168106 CTCTATGTGCCAGTCTGCTCTT 59.832 50.000 0.00 0.00 0.00 2.85
42 43 2.093816 TCTATGTGCCAGTCTGCTCTTG 60.094 50.000 0.00 0.00 0.00 3.02
43 44 0.322277 ATGTGCCAGTCTGCTCTTGG 60.322 55.000 0.00 0.00 0.00 3.61
44 45 1.072159 GTGCCAGTCTGCTCTTGGT 59.928 57.895 0.00 0.00 0.00 3.67
45 46 1.071987 TGCCAGTCTGCTCTTGGTG 59.928 57.895 0.00 0.00 0.00 4.17
46 47 1.072159 GCCAGTCTGCTCTTGGTGT 59.928 57.895 0.00 0.00 0.00 4.16
47 48 0.536006 GCCAGTCTGCTCTTGGTGTT 60.536 55.000 0.00 0.00 0.00 3.32
48 49 1.233019 CCAGTCTGCTCTTGGTGTTG 58.767 55.000 0.00 0.00 0.00 3.33
49 50 1.202687 CCAGTCTGCTCTTGGTGTTGA 60.203 52.381 0.00 0.00 0.00 3.18
50 51 2.551721 CCAGTCTGCTCTTGGTGTTGAT 60.552 50.000 0.00 0.00 0.00 2.57
51 52 3.144506 CAGTCTGCTCTTGGTGTTGATT 58.855 45.455 0.00 0.00 0.00 2.57
52 53 3.058432 CAGTCTGCTCTTGGTGTTGATTG 60.058 47.826 0.00 0.00 0.00 2.67
53 54 1.881973 TCTGCTCTTGGTGTTGATTGC 59.118 47.619 0.00 0.00 0.00 3.56
54 55 1.884579 CTGCTCTTGGTGTTGATTGCT 59.115 47.619 0.00 0.00 0.00 3.91
55 56 1.881973 TGCTCTTGGTGTTGATTGCTC 59.118 47.619 0.00 0.00 0.00 4.26
56 57 1.200948 GCTCTTGGTGTTGATTGCTCC 59.799 52.381 0.00 0.00 0.00 4.70
57 58 2.507484 CTCTTGGTGTTGATTGCTCCA 58.493 47.619 0.00 0.00 0.00 3.86
58 59 2.486982 CTCTTGGTGTTGATTGCTCCAG 59.513 50.000 0.00 0.00 32.13 3.86
59 60 2.106338 TCTTGGTGTTGATTGCTCCAGA 59.894 45.455 0.00 0.00 32.13 3.86
60 61 2.189594 TGGTGTTGATTGCTCCAGAG 57.810 50.000 0.00 0.00 0.00 3.35
61 62 1.699083 TGGTGTTGATTGCTCCAGAGA 59.301 47.619 0.00 0.00 0.00 3.10
62 63 2.289882 TGGTGTTGATTGCTCCAGAGAG 60.290 50.000 0.00 0.00 43.57 3.20
63 64 2.354259 GTGTTGATTGCTCCAGAGAGG 58.646 52.381 0.00 0.00 40.79 3.69
64 65 2.027745 GTGTTGATTGCTCCAGAGAGGA 60.028 50.000 0.00 0.00 46.75 3.71
69 70 2.847327 TTGCTCCAGAGAGGAAACTG 57.153 50.000 0.00 0.00 46.22 3.16
70 71 1.349026 TTGCTCCAGAGAGGAAACTGG 59.651 52.381 0.00 0.00 46.22 4.00
77 78 2.166254 CAGAGAGGAAACTGGAGAGAGC 59.834 54.545 0.00 0.00 44.43 4.09
78 79 2.175202 GAGAGGAAACTGGAGAGAGCA 58.825 52.381 0.00 0.00 44.43 4.26
79 80 2.564947 GAGAGGAAACTGGAGAGAGCAA 59.435 50.000 0.00 0.00 44.43 3.91
80 81 2.975489 AGAGGAAACTGGAGAGAGCAAA 59.025 45.455 0.00 0.00 44.43 3.68
81 82 3.007831 AGAGGAAACTGGAGAGAGCAAAG 59.992 47.826 0.00 0.00 44.43 2.77
82 83 2.039613 AGGAAACTGGAGAGAGCAAAGG 59.960 50.000 0.00 0.00 41.13 3.11
83 84 1.809547 GAAACTGGAGAGAGCAAAGGC 59.190 52.381 0.00 0.00 41.61 4.35
84 85 0.767375 AACTGGAGAGAGCAAAGGCA 59.233 50.000 0.00 0.00 44.61 4.75
85 86 0.324285 ACTGGAGAGAGCAAAGGCAG 59.676 55.000 0.00 0.00 44.61 4.85
86 87 0.392729 CTGGAGAGAGCAAAGGCAGG 60.393 60.000 0.00 0.00 44.61 4.85
87 88 1.748500 GGAGAGAGCAAAGGCAGGC 60.749 63.158 0.00 0.00 44.61 4.85
88 89 1.002868 GAGAGAGCAAAGGCAGGCA 60.003 57.895 0.00 0.00 44.61 4.75
89 90 1.303155 AGAGAGCAAAGGCAGGCAC 60.303 57.895 0.00 0.00 44.61 5.01
90 91 2.670934 AGAGCAAAGGCAGGCACG 60.671 61.111 0.00 0.00 44.61 5.34
91 92 2.669569 GAGCAAAGGCAGGCACGA 60.670 61.111 0.00 0.00 44.61 4.35
92 93 2.970974 GAGCAAAGGCAGGCACGAC 61.971 63.158 0.00 0.00 44.61 4.34
93 94 4.043200 GCAAAGGCAGGCACGACC 62.043 66.667 0.00 0.00 40.72 4.79
94 95 2.594303 CAAAGGCAGGCACGACCA 60.594 61.111 0.00 0.00 43.14 4.02
95 96 2.281761 AAAGGCAGGCACGACCAG 60.282 61.111 0.00 0.00 43.14 4.00
106 107 3.557824 CGACCAGCGTTAACCCAC 58.442 61.111 0.00 0.00 34.64 4.61
107 108 1.301087 CGACCAGCGTTAACCCACA 60.301 57.895 0.00 0.00 34.64 4.17
108 109 0.672401 CGACCAGCGTTAACCCACAT 60.672 55.000 0.00 0.00 34.64 3.21
109 110 0.802494 GACCAGCGTTAACCCACATG 59.198 55.000 0.00 0.00 0.00 3.21
110 111 0.109723 ACCAGCGTTAACCCACATGT 59.890 50.000 0.00 0.00 0.00 3.21
111 112 1.348366 ACCAGCGTTAACCCACATGTA 59.652 47.619 0.00 0.00 0.00 2.29
112 113 2.006888 CCAGCGTTAACCCACATGTAG 58.993 52.381 0.00 0.00 0.00 2.74
113 114 2.614481 CCAGCGTTAACCCACATGTAGT 60.614 50.000 0.00 0.00 0.00 2.73
114 115 3.368635 CCAGCGTTAACCCACATGTAGTA 60.369 47.826 0.00 0.00 0.00 1.82
115 116 4.439057 CAGCGTTAACCCACATGTAGTAT 58.561 43.478 0.00 0.00 0.00 2.12
116 117 5.452216 CCAGCGTTAACCCACATGTAGTATA 60.452 44.000 0.00 0.00 0.00 1.47
117 118 6.220930 CAGCGTTAACCCACATGTAGTATAT 58.779 40.000 0.00 0.00 0.00 0.86
118 119 7.372714 CAGCGTTAACCCACATGTAGTATATA 58.627 38.462 0.00 0.00 0.00 0.86
119 120 8.033038 CAGCGTTAACCCACATGTAGTATATAT 58.967 37.037 0.00 0.00 0.00 0.86
120 121 8.033038 AGCGTTAACCCACATGTAGTATATATG 58.967 37.037 0.00 0.00 44.60 1.78
121 122 7.277098 GCGTTAACCCACATGTAGTATATATGG 59.723 40.741 0.00 0.00 43.51 2.74
122 123 8.308931 CGTTAACCCACATGTAGTATATATGGT 58.691 37.037 0.00 0.00 43.51 3.55
125 126 7.419711 ACCCACATGTAGTATATATGGTAGC 57.580 40.000 0.00 0.00 43.51 3.58
126 127 7.189794 ACCCACATGTAGTATATATGGTAGCT 58.810 38.462 0.00 0.00 43.51 3.32
127 128 7.124298 ACCCACATGTAGTATATATGGTAGCTG 59.876 40.741 0.00 0.00 43.51 4.24
128 129 7.342026 CCCACATGTAGTATATATGGTAGCTGA 59.658 40.741 0.00 0.00 43.51 4.26
129 130 8.191446 CCACATGTAGTATATATGGTAGCTGAC 58.809 40.741 0.00 0.00 43.51 3.51
161 162 5.695851 CAGAGTTGCACCACTATTTTCTT 57.304 39.130 0.00 0.00 0.00 2.52
162 163 6.076981 CAGAGTTGCACCACTATTTTCTTT 57.923 37.500 0.00 0.00 0.00 2.52
163 164 6.145535 CAGAGTTGCACCACTATTTTCTTTC 58.854 40.000 0.00 0.00 0.00 2.62
164 165 6.016777 CAGAGTTGCACCACTATTTTCTTTCT 60.017 38.462 0.00 0.00 0.00 2.52
165 166 6.547510 AGAGTTGCACCACTATTTTCTTTCTT 59.452 34.615 0.00 0.00 0.00 2.52
166 167 6.507023 AGTTGCACCACTATTTTCTTTCTTG 58.493 36.000 0.00 0.00 0.00 3.02
167 168 6.096846 AGTTGCACCACTATTTTCTTTCTTGT 59.903 34.615 0.00 0.00 0.00 3.16
168 169 5.830912 TGCACCACTATTTTCTTTCTTGTG 58.169 37.500 0.00 0.00 0.00 3.33
169 170 5.221224 TGCACCACTATTTTCTTTCTTGTGG 60.221 40.000 0.00 0.00 46.11 4.17
172 173 5.689819 CCACTATTTTCTTTCTTGTGGTCG 58.310 41.667 0.00 0.00 38.75 4.79
173 174 5.238650 CCACTATTTTCTTTCTTGTGGTCGT 59.761 40.000 0.00 0.00 38.75 4.34
174 175 6.363473 CACTATTTTCTTTCTTGTGGTCGTC 58.637 40.000 0.00 0.00 0.00 4.20
175 176 6.018262 CACTATTTTCTTTCTTGTGGTCGTCA 60.018 38.462 0.00 0.00 0.00 4.35
176 177 4.609691 TTTTCTTTCTTGTGGTCGTCAC 57.390 40.909 5.06 5.06 46.23 3.67
177 178 2.234300 TCTTTCTTGTGGTCGTCACC 57.766 50.000 8.63 0.00 45.48 4.02
178 179 1.760613 TCTTTCTTGTGGTCGTCACCT 59.239 47.619 8.63 0.00 45.48 4.00
179 180 2.960384 TCTTTCTTGTGGTCGTCACCTA 59.040 45.455 8.63 0.00 45.48 3.08
180 181 3.005472 TCTTTCTTGTGGTCGTCACCTAG 59.995 47.826 8.63 6.79 45.48 3.02
181 182 0.601558 TCTTGTGGTCGTCACCTAGC 59.398 55.000 8.63 0.00 45.48 3.42
182 183 0.317160 CTTGTGGTCGTCACCTAGCA 59.683 55.000 8.63 0.00 45.48 3.49
183 184 0.753867 TTGTGGTCGTCACCTAGCAA 59.246 50.000 8.63 3.06 45.48 3.91
184 185 0.317160 TGTGGTCGTCACCTAGCAAG 59.683 55.000 8.63 0.00 45.48 4.01
200 201 6.601741 CTAGCAAGGAATCAGAAATCAGTC 57.398 41.667 0.00 0.00 0.00 3.51
201 202 4.268359 AGCAAGGAATCAGAAATCAGTCC 58.732 43.478 0.00 0.00 0.00 3.85
202 203 4.012374 GCAAGGAATCAGAAATCAGTCCA 58.988 43.478 0.00 0.00 0.00 4.02
203 204 4.643784 GCAAGGAATCAGAAATCAGTCCAT 59.356 41.667 0.00 0.00 0.00 3.41
204 205 5.126707 GCAAGGAATCAGAAATCAGTCCATT 59.873 40.000 0.00 0.00 0.00 3.16
205 206 6.350780 GCAAGGAATCAGAAATCAGTCCATTT 60.351 38.462 0.00 0.00 0.00 2.32
206 207 7.256286 CAAGGAATCAGAAATCAGTCCATTTC 58.744 38.462 0.00 0.00 41.37 2.17
207 208 5.587844 AGGAATCAGAAATCAGTCCATTTCG 59.412 40.000 0.00 0.00 44.40 3.46
208 209 5.220931 GGAATCAGAAATCAGTCCATTTCGG 60.221 44.000 0.00 0.00 44.40 4.30
209 210 4.286297 TCAGAAATCAGTCCATTTCGGT 57.714 40.909 6.13 0.00 44.40 4.69
210 211 4.002982 TCAGAAATCAGTCCATTTCGGTG 58.997 43.478 6.13 0.00 44.40 4.94
211 212 3.753272 CAGAAATCAGTCCATTTCGGTGT 59.247 43.478 0.00 0.00 44.40 4.16
212 213 4.935205 CAGAAATCAGTCCATTTCGGTGTA 59.065 41.667 0.00 0.00 44.40 2.90
213 214 5.063944 CAGAAATCAGTCCATTTCGGTGTAG 59.936 44.000 0.00 0.00 44.40 2.74
214 215 4.819105 AATCAGTCCATTTCGGTGTAGA 57.181 40.909 0.00 0.00 35.57 2.59
215 216 4.819105 ATCAGTCCATTTCGGTGTAGAA 57.181 40.909 0.00 0.00 35.57 2.10
216 217 4.610605 TCAGTCCATTTCGGTGTAGAAA 57.389 40.909 0.00 0.00 43.28 2.52
217 218 4.963373 TCAGTCCATTTCGGTGTAGAAAA 58.037 39.130 0.00 0.00 42.52 2.29
218 219 5.556915 TCAGTCCATTTCGGTGTAGAAAAT 58.443 37.500 0.00 0.00 42.52 1.82
219 220 6.001460 TCAGTCCATTTCGGTGTAGAAAATT 58.999 36.000 0.00 0.00 42.52 1.82
220 221 7.162761 TCAGTCCATTTCGGTGTAGAAAATTA 58.837 34.615 0.00 0.00 42.52 1.40
221 222 7.662258 TCAGTCCATTTCGGTGTAGAAAATTAA 59.338 33.333 0.00 0.00 42.52 1.40
222 223 8.458843 CAGTCCATTTCGGTGTAGAAAATTAAT 58.541 33.333 0.00 0.00 42.52 1.40
223 224 8.458843 AGTCCATTTCGGTGTAGAAAATTAATG 58.541 33.333 0.00 0.00 42.52 1.90
224 225 7.220108 GTCCATTTCGGTGTAGAAAATTAATGC 59.780 37.037 0.00 0.00 42.52 3.56
225 226 7.122055 TCCATTTCGGTGTAGAAAATTAATGCT 59.878 33.333 0.00 0.00 42.52 3.79
226 227 7.220683 CCATTTCGGTGTAGAAAATTAATGCTG 59.779 37.037 0.00 0.00 42.52 4.41
227 228 6.811253 TTCGGTGTAGAAAATTAATGCTGT 57.189 33.333 0.00 0.00 0.00 4.40
228 229 7.908827 TTCGGTGTAGAAAATTAATGCTGTA 57.091 32.000 0.00 0.00 0.00 2.74
229 230 7.534085 TCGGTGTAGAAAATTAATGCTGTAG 57.466 36.000 0.00 0.00 0.00 2.74
230 231 6.537301 TCGGTGTAGAAAATTAATGCTGTAGG 59.463 38.462 0.00 0.00 0.00 3.18
231 232 6.537301 CGGTGTAGAAAATTAATGCTGTAGGA 59.463 38.462 0.00 0.00 0.00 2.94
232 233 7.465513 CGGTGTAGAAAATTAATGCTGTAGGAC 60.466 40.741 0.00 0.00 0.00 3.85
233 234 7.553044 GGTGTAGAAAATTAATGCTGTAGGACT 59.447 37.037 0.00 0.00 0.00 3.85
234 235 9.595823 GTGTAGAAAATTAATGCTGTAGGACTA 57.404 33.333 0.00 0.00 0.00 2.59
235 236 9.817809 TGTAGAAAATTAATGCTGTAGGACTAG 57.182 33.333 0.00 0.00 0.00 2.57
236 237 9.819267 GTAGAAAATTAATGCTGTAGGACTAGT 57.181 33.333 0.00 0.00 0.00 2.57
237 238 8.723942 AGAAAATTAATGCTGTAGGACTAGTG 57.276 34.615 0.00 0.00 0.00 2.74
238 239 7.770897 AGAAAATTAATGCTGTAGGACTAGTGG 59.229 37.037 0.00 0.00 0.00 4.00
239 240 6.561519 AATTAATGCTGTAGGACTAGTGGT 57.438 37.500 0.00 0.00 0.00 4.16
240 241 6.561519 ATTAATGCTGTAGGACTAGTGGTT 57.438 37.500 0.00 0.00 0.00 3.67
241 242 4.910458 AATGCTGTAGGACTAGTGGTTT 57.090 40.909 0.00 0.00 0.00 3.27
242 243 7.484993 TTAATGCTGTAGGACTAGTGGTTTA 57.515 36.000 0.00 0.00 0.00 2.01
243 244 6.368779 AATGCTGTAGGACTAGTGGTTTAA 57.631 37.500 0.00 0.00 0.00 1.52
244 245 6.561519 ATGCTGTAGGACTAGTGGTTTAAT 57.438 37.500 0.00 0.00 0.00 1.40
245 246 6.368779 TGCTGTAGGACTAGTGGTTTAATT 57.631 37.500 0.00 0.00 0.00 1.40
246 247 6.403878 TGCTGTAGGACTAGTGGTTTAATTC 58.596 40.000 0.00 0.00 0.00 2.17
247 248 6.014070 TGCTGTAGGACTAGTGGTTTAATTCA 60.014 38.462 0.00 0.00 0.00 2.57
248 249 6.313164 GCTGTAGGACTAGTGGTTTAATTCAC 59.687 42.308 0.00 1.74 0.00 3.18
249 250 6.704310 TGTAGGACTAGTGGTTTAATTCACC 58.296 40.000 0.00 0.47 34.67 4.02
250 251 5.836024 AGGACTAGTGGTTTAATTCACCA 57.164 39.130 0.00 5.48 42.34 4.17
251 252 5.805728 AGGACTAGTGGTTTAATTCACCAG 58.194 41.667 0.00 0.27 45.29 4.00
252 253 5.546499 AGGACTAGTGGTTTAATTCACCAGA 59.454 40.000 0.00 1.73 45.29 3.86
253 254 6.215636 AGGACTAGTGGTTTAATTCACCAGAT 59.784 38.462 0.00 5.11 45.29 2.90
254 255 6.884836 GGACTAGTGGTTTAATTCACCAGATT 59.115 38.462 0.00 2.86 45.29 2.40
255 256 7.148239 GGACTAGTGGTTTAATTCACCAGATTG 60.148 40.741 0.00 5.98 45.29 2.67
256 257 7.458397 ACTAGTGGTTTAATTCACCAGATTGA 58.542 34.615 9.27 0.00 45.29 2.57
257 258 8.109634 ACTAGTGGTTTAATTCACCAGATTGAT 58.890 33.333 9.27 0.00 45.29 2.57
258 259 7.781324 AGTGGTTTAATTCACCAGATTGATT 57.219 32.000 9.27 0.00 45.29 2.57
259 260 7.830739 AGTGGTTTAATTCACCAGATTGATTC 58.169 34.615 9.27 0.00 45.29 2.52
260 261 7.451255 AGTGGTTTAATTCACCAGATTGATTCA 59.549 33.333 9.27 0.00 45.29 2.57
261 262 7.542130 GTGGTTTAATTCACCAGATTGATTCAC 59.458 37.037 9.27 0.00 45.29 3.18
262 263 7.035612 GGTTTAATTCACCAGATTGATTCACC 58.964 38.462 2.42 0.00 34.04 4.02
263 264 7.309744 GGTTTAATTCACCAGATTGATTCACCA 60.310 37.037 2.42 0.00 34.04 4.17
264 265 7.959658 TTAATTCACCAGATTGATTCACCAT 57.040 32.000 0.00 0.00 0.00 3.55
265 266 9.473007 TTTAATTCACCAGATTGATTCACCATA 57.527 29.630 0.00 0.00 0.00 2.74
266 267 7.959658 AATTCACCAGATTGATTCACCATAA 57.040 32.000 0.00 0.00 0.00 1.90
267 268 7.959658 ATTCACCAGATTGATTCACCATAAA 57.040 32.000 0.00 0.00 0.00 1.40
268 269 7.959658 TTCACCAGATTGATTCACCATAAAT 57.040 32.000 0.00 0.00 0.00 1.40
269 270 9.645128 ATTCACCAGATTGATTCACCATAAATA 57.355 29.630 0.00 0.00 0.00 1.40
270 271 9.473007 TTCACCAGATTGATTCACCATAAATAA 57.527 29.630 0.00 0.00 0.00 1.40
271 272 9.645128 TCACCAGATTGATTCACCATAAATAAT 57.355 29.630 0.00 0.00 0.00 1.28
314 315 9.236006 ACACTGAGCATTGAATAATTAGAAAGT 57.764 29.630 0.00 0.00 0.00 2.66
335 336 9.594038 GAAAGTACATGTAACATTATATTGCGG 57.406 33.333 7.25 0.00 0.00 5.69
336 337 7.667043 AGTACATGTAACATTATATTGCGGG 57.333 36.000 7.25 0.00 0.00 6.13
337 338 5.371115 ACATGTAACATTATATTGCGGGC 57.629 39.130 0.00 0.00 0.00 6.13
338 339 5.070001 ACATGTAACATTATATTGCGGGCT 58.930 37.500 0.00 0.00 0.00 5.19
339 340 5.181245 ACATGTAACATTATATTGCGGGCTC 59.819 40.000 0.00 0.00 0.00 4.70
340 341 4.968259 TGTAACATTATATTGCGGGCTCT 58.032 39.130 0.00 0.00 0.00 4.09
341 342 6.104146 TGTAACATTATATTGCGGGCTCTA 57.896 37.500 0.00 0.00 0.00 2.43
342 343 6.163476 TGTAACATTATATTGCGGGCTCTAG 58.837 40.000 0.00 0.00 0.00 2.43
343 344 3.600388 ACATTATATTGCGGGCTCTAGC 58.400 45.455 0.00 0.00 41.14 3.42
344 345 2.363788 TTATATTGCGGGCTCTAGCG 57.636 50.000 0.00 0.00 43.26 4.26
345 346 1.254026 TATATTGCGGGCTCTAGCGT 58.746 50.000 0.00 0.00 43.26 5.07
346 347 1.254026 ATATTGCGGGCTCTAGCGTA 58.746 50.000 0.00 0.00 43.26 4.42
347 348 0.313043 TATTGCGGGCTCTAGCGTAC 59.687 55.000 0.00 0.00 43.26 3.67
348 349 1.392710 ATTGCGGGCTCTAGCGTACT 61.393 55.000 0.00 0.00 43.26 2.73
349 350 0.749091 TTGCGGGCTCTAGCGTACTA 60.749 55.000 0.00 0.00 43.26 1.82
350 351 0.749091 TGCGGGCTCTAGCGTACTAA 60.749 55.000 0.00 0.00 43.26 2.24
351 352 0.383231 GCGGGCTCTAGCGTACTAAA 59.617 55.000 0.00 0.00 43.26 1.85
352 353 1.202336 GCGGGCTCTAGCGTACTAAAA 60.202 52.381 0.00 0.00 43.26 1.52
353 354 2.545322 GCGGGCTCTAGCGTACTAAAAT 60.545 50.000 0.00 0.00 43.26 1.82
354 355 3.304928 GCGGGCTCTAGCGTACTAAAATA 60.305 47.826 0.00 0.00 43.26 1.40
355 356 4.617762 GCGGGCTCTAGCGTACTAAAATAT 60.618 45.833 0.00 0.00 43.26 1.28
356 357 5.467705 CGGGCTCTAGCGTACTAAAATATT 58.532 41.667 0.00 0.00 43.26 1.28
357 358 6.615088 CGGGCTCTAGCGTACTAAAATATTA 58.385 40.000 0.00 0.00 43.26 0.98
358 359 6.525976 CGGGCTCTAGCGTACTAAAATATTAC 59.474 42.308 0.00 0.00 43.26 1.89
359 360 7.574592 CGGGCTCTAGCGTACTAAAATATTACT 60.575 40.741 0.00 0.00 43.26 2.24
360 361 7.754475 GGGCTCTAGCGTACTAAAATATTACTC 59.246 40.741 0.00 0.00 43.26 2.59
361 362 7.754475 GGCTCTAGCGTACTAAAATATTACTCC 59.246 40.741 0.00 0.00 43.26 3.85
362 363 7.754475 GCTCTAGCGTACTAAAATATTACTCCC 59.246 40.741 0.00 0.00 0.00 4.30
363 364 8.930846 TCTAGCGTACTAAAATATTACTCCCT 57.069 34.615 0.00 0.00 0.00 4.20
364 365 9.007901 TCTAGCGTACTAAAATATTACTCCCTC 57.992 37.037 0.00 0.00 0.00 4.30
365 366 7.836479 AGCGTACTAAAATATTACTCCCTCT 57.164 36.000 0.00 0.00 0.00 3.69
366 367 7.659186 AGCGTACTAAAATATTACTCCCTCTG 58.341 38.462 0.00 0.00 0.00 3.35
367 368 7.287235 AGCGTACTAAAATATTACTCCCTCTGT 59.713 37.037 0.00 0.00 0.00 3.41
368 369 7.924947 GCGTACTAAAATATTACTCCCTCTGTT 59.075 37.037 0.00 0.00 0.00 3.16
369 370 9.460906 CGTACTAAAATATTACTCCCTCTGTTC 57.539 37.037 0.00 0.00 0.00 3.18
370 371 9.761504 GTACTAAAATATTACTCCCTCTGTTCC 57.238 37.037 0.00 0.00 0.00 3.62
371 372 8.388656 ACTAAAATATTACTCCCTCTGTTCCA 57.611 34.615 0.00 0.00 0.00 3.53
372 373 8.265764 ACTAAAATATTACTCCCTCTGTTCCAC 58.734 37.037 0.00 0.00 0.00 4.02
373 374 6.636454 AAATATTACTCCCTCTGTTCCACA 57.364 37.500 0.00 0.00 0.00 4.17
374 375 6.636454 AATATTACTCCCTCTGTTCCACAA 57.364 37.500 0.00 0.00 0.00 3.33
375 376 6.831664 ATATTACTCCCTCTGTTCCACAAT 57.168 37.500 0.00 0.00 0.00 2.71
376 377 4.993705 TTACTCCCTCTGTTCCACAATT 57.006 40.909 0.00 0.00 0.00 2.32
377 378 3.146104 ACTCCCTCTGTTCCACAATTG 57.854 47.619 3.24 3.24 0.00 2.32
378 379 2.443255 ACTCCCTCTGTTCCACAATTGT 59.557 45.455 4.92 4.92 0.00 2.71
379 380 2.816087 CTCCCTCTGTTCCACAATTGTG 59.184 50.000 28.18 28.18 45.23 3.33
387 388 4.433102 CACAATTGTGGCGCGTAC 57.567 55.556 27.60 8.42 42.10 3.67
388 389 1.571953 CACAATTGTGGCGCGTACA 59.428 52.632 27.60 11.27 42.10 2.90
389 390 0.452618 CACAATTGTGGCGCGTACAG 60.453 55.000 27.60 5.03 42.10 2.74
390 391 0.601576 ACAATTGTGGCGCGTACAGA 60.602 50.000 11.07 2.96 0.00 3.41
391 392 0.726827 CAATTGTGGCGCGTACAGAT 59.273 50.000 8.43 7.54 0.00 2.90
392 393 1.130373 CAATTGTGGCGCGTACAGATT 59.870 47.619 8.43 12.36 0.00 2.40
393 394 1.448985 ATTGTGGCGCGTACAGATTT 58.551 45.000 8.43 0.00 0.00 2.17
394 395 2.081725 TTGTGGCGCGTACAGATTTA 57.918 45.000 8.43 0.00 0.00 1.40
395 396 2.081725 TGTGGCGCGTACAGATTTAA 57.918 45.000 8.43 0.00 0.00 1.52
396 397 2.414806 TGTGGCGCGTACAGATTTAAA 58.585 42.857 8.43 0.00 0.00 1.52
397 398 2.806818 TGTGGCGCGTACAGATTTAAAA 59.193 40.909 8.43 0.00 0.00 1.52
398 399 3.250280 TGTGGCGCGTACAGATTTAAAAA 59.750 39.130 8.43 0.00 0.00 1.94
399 400 3.844099 GTGGCGCGTACAGATTTAAAAAG 59.156 43.478 8.43 0.00 0.00 2.27
400 401 3.747010 TGGCGCGTACAGATTTAAAAAGA 59.253 39.130 8.43 0.00 0.00 2.52
401 402 4.213694 TGGCGCGTACAGATTTAAAAAGAA 59.786 37.500 8.43 0.00 0.00 2.52
402 403 5.148568 GGCGCGTACAGATTTAAAAAGAAA 58.851 37.500 8.43 0.00 0.00 2.52
403 404 5.626132 GGCGCGTACAGATTTAAAAAGAAAA 59.374 36.000 8.43 0.00 0.00 2.29
404 405 6.307077 GGCGCGTACAGATTTAAAAAGAAAAT 59.693 34.615 8.43 0.00 0.00 1.82
405 406 7.482428 GGCGCGTACAGATTTAAAAAGAAAATA 59.518 33.333 8.43 0.00 0.00 1.40
406 407 8.842777 GCGCGTACAGATTTAAAAAGAAAATAA 58.157 29.630 8.43 0.00 0.00 1.40
436 437 8.939201 TTGCAAATTTTGATCAAGTTTACAGA 57.061 26.923 13.26 8.60 0.00 3.41
437 438 8.578308 TGCAAATTTTGATCAAGTTTACAGAG 57.422 30.769 13.26 8.41 0.00 3.35
438 439 8.412456 TGCAAATTTTGATCAAGTTTACAGAGA 58.588 29.630 13.26 0.00 0.00 3.10
439 440 9.248291 GCAAATTTTGATCAAGTTTACAGAGAA 57.752 29.630 13.26 3.34 0.00 2.87
569 570 5.567138 AACTTTGGCATAGTTAGTGATGC 57.433 39.130 19.68 0.00 46.31 3.91
570 571 4.848357 ACTTTGGCATAGTTAGTGATGCT 58.152 39.130 4.66 0.00 46.27 3.79
571 572 5.256474 ACTTTGGCATAGTTAGTGATGCTT 58.744 37.500 4.66 0.00 46.27 3.91
572 573 5.124457 ACTTTGGCATAGTTAGTGATGCTTG 59.876 40.000 4.66 0.00 46.27 4.01
573 574 4.486125 TGGCATAGTTAGTGATGCTTGA 57.514 40.909 6.79 0.00 46.27 3.02
574 575 4.191544 TGGCATAGTTAGTGATGCTTGAC 58.808 43.478 6.79 0.00 46.27 3.18
575 576 4.080919 TGGCATAGTTAGTGATGCTTGACT 60.081 41.667 6.79 0.00 46.27 3.41
576 577 4.878397 GGCATAGTTAGTGATGCTTGACTT 59.122 41.667 6.79 0.00 46.27 3.01
577 578 5.355350 GGCATAGTTAGTGATGCTTGACTTT 59.645 40.000 6.79 0.00 46.27 2.66
578 579 6.127897 GGCATAGTTAGTGATGCTTGACTTTT 60.128 38.462 6.79 0.00 46.27 2.27
579 580 6.963805 GCATAGTTAGTGATGCTTGACTTTTC 59.036 38.462 0.00 0.00 44.15 2.29
580 581 7.361201 GCATAGTTAGTGATGCTTGACTTTTCA 60.361 37.037 0.00 0.00 44.15 2.69
581 582 6.942532 AGTTAGTGATGCTTGACTTTTCAA 57.057 33.333 0.00 0.00 39.55 2.69
582 583 7.333528 AGTTAGTGATGCTTGACTTTTCAAA 57.666 32.000 0.00 0.00 41.34 2.69
583 584 7.771183 AGTTAGTGATGCTTGACTTTTCAAAA 58.229 30.769 0.00 0.00 41.34 2.44
584 585 8.250332 AGTTAGTGATGCTTGACTTTTCAAAAA 58.750 29.630 0.00 0.00 41.34 1.94
585 586 6.892310 AGTGATGCTTGACTTTTCAAAAAC 57.108 33.333 0.00 0.00 41.34 2.43
586 587 6.633856 AGTGATGCTTGACTTTTCAAAAACT 58.366 32.000 0.00 0.00 41.34 2.66
587 588 6.753744 AGTGATGCTTGACTTTTCAAAAACTC 59.246 34.615 0.00 0.00 41.34 3.01
588 589 6.753744 GTGATGCTTGACTTTTCAAAAACTCT 59.246 34.615 0.00 0.00 41.34 3.24
589 590 7.915397 GTGATGCTTGACTTTTCAAAAACTCTA 59.085 33.333 0.00 0.00 41.34 2.43
590 591 7.915397 TGATGCTTGACTTTTCAAAAACTCTAC 59.085 33.333 0.00 0.00 41.34 2.59
591 592 7.151999 TGCTTGACTTTTCAAAAACTCTACA 57.848 32.000 0.00 0.00 41.34 2.74
592 593 7.771183 TGCTTGACTTTTCAAAAACTCTACAT 58.229 30.769 0.00 0.00 41.34 2.29
593 594 7.701924 TGCTTGACTTTTCAAAAACTCTACATG 59.298 33.333 0.00 0.00 41.34 3.21
594 595 7.306225 GCTTGACTTTTCAAAAACTCTACATGC 60.306 37.037 0.00 0.00 41.34 4.06
595 596 7.094508 TGACTTTTCAAAAACTCTACATGCA 57.905 32.000 0.00 0.00 0.00 3.96
596 597 6.972328 TGACTTTTCAAAAACTCTACATGCAC 59.028 34.615 0.00 0.00 0.00 4.57
597 598 7.100458 ACTTTTCAAAAACTCTACATGCACT 57.900 32.000 0.00 0.00 0.00 4.40
598 599 8.220755 ACTTTTCAAAAACTCTACATGCACTA 57.779 30.769 0.00 0.00 0.00 2.74
599 600 8.129211 ACTTTTCAAAAACTCTACATGCACTAC 58.871 33.333 0.00 0.00 0.00 2.73
600 601 7.561021 TTTCAAAAACTCTACATGCACTACA 57.439 32.000 0.00 0.00 0.00 2.74
601 602 7.744087 TTCAAAAACTCTACATGCACTACAT 57.256 32.000 0.00 0.00 40.66 2.29
602 603 7.744087 TCAAAAACTCTACATGCACTACATT 57.256 32.000 0.00 0.00 36.64 2.71
603 604 8.840833 TCAAAAACTCTACATGCACTACATTA 57.159 30.769 0.00 0.00 36.64 1.90
604 605 9.448438 TCAAAAACTCTACATGCACTACATTAT 57.552 29.630 0.00 0.00 36.64 1.28
605 606 9.494479 CAAAAACTCTACATGCACTACATTATG 57.506 33.333 0.00 0.00 36.64 1.90
606 607 7.792374 AAACTCTACATGCACTACATTATGG 57.208 36.000 0.00 0.00 36.64 2.74
607 608 6.731292 ACTCTACATGCACTACATTATGGA 57.269 37.500 0.00 0.00 36.64 3.41
608 609 7.124573 ACTCTACATGCACTACATTATGGAA 57.875 36.000 0.00 0.00 36.64 3.53
609 610 6.986817 ACTCTACATGCACTACATTATGGAAC 59.013 38.462 0.00 0.00 36.64 3.62
610 611 5.983118 TCTACATGCACTACATTATGGAACG 59.017 40.000 0.00 0.00 36.64 3.95
611 612 3.876914 ACATGCACTACATTATGGAACGG 59.123 43.478 0.00 0.00 36.64 4.44
612 613 3.897141 TGCACTACATTATGGAACGGA 57.103 42.857 0.00 0.00 0.00 4.69
613 614 3.792401 TGCACTACATTATGGAACGGAG 58.208 45.455 0.00 0.00 0.00 4.63
614 615 3.131396 GCACTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
615 616 3.181469 GCACTACATTATGGAACGGAGGA 60.181 47.826 0.00 0.00 0.00 3.71
616 617 4.682320 GCACTACATTATGGAACGGAGGAA 60.682 45.833 0.00 0.00 0.00 3.36
617 618 5.050490 CACTACATTATGGAACGGAGGAAG 58.950 45.833 0.00 0.00 0.00 3.46
618 619 4.715297 ACTACATTATGGAACGGAGGAAGT 59.285 41.667 0.00 0.00 0.00 3.01
619 620 3.873910 ACATTATGGAACGGAGGAAGTG 58.126 45.455 0.00 0.00 0.00 3.16
620 621 3.263425 ACATTATGGAACGGAGGAAGTGT 59.737 43.478 0.00 0.00 0.00 3.55
621 622 3.328382 TTATGGAACGGAGGAAGTGTG 57.672 47.619 0.00 0.00 0.00 3.82
622 623 1.056660 ATGGAACGGAGGAAGTGTGT 58.943 50.000 0.00 0.00 0.00 3.72
623 624 0.391597 TGGAACGGAGGAAGTGTGTC 59.608 55.000 0.00 0.00 0.00 3.67
624 625 0.680061 GGAACGGAGGAAGTGTGTCT 59.320 55.000 0.00 0.00 0.00 3.41
625 626 1.891150 GGAACGGAGGAAGTGTGTCTA 59.109 52.381 0.00 0.00 0.00 2.59
626 627 2.094649 GGAACGGAGGAAGTGTGTCTAG 60.095 54.545 0.00 0.00 0.00 2.43
627 628 2.581216 ACGGAGGAAGTGTGTCTAGA 57.419 50.000 0.00 0.00 0.00 2.43
628 629 2.872732 ACGGAGGAAGTGTGTCTAGAA 58.127 47.619 0.00 0.00 0.00 2.10
629 630 3.228453 ACGGAGGAAGTGTGTCTAGAAA 58.772 45.455 0.00 0.00 0.00 2.52
630 631 3.833070 ACGGAGGAAGTGTGTCTAGAAAT 59.167 43.478 0.00 0.00 0.00 2.17
631 632 4.177026 CGGAGGAAGTGTGTCTAGAAATG 58.823 47.826 0.00 0.00 0.00 2.32
632 633 4.082190 CGGAGGAAGTGTGTCTAGAAATGA 60.082 45.833 0.00 0.00 0.00 2.57
633 634 5.394663 CGGAGGAAGTGTGTCTAGAAATGAT 60.395 44.000 0.00 0.00 0.00 2.45
634 635 5.814705 GGAGGAAGTGTGTCTAGAAATGATG 59.185 44.000 0.00 0.00 0.00 3.07
635 636 6.351371 GGAGGAAGTGTGTCTAGAAATGATGA 60.351 42.308 0.00 0.00 0.00 2.92
636 637 6.638610 AGGAAGTGTGTCTAGAAATGATGAG 58.361 40.000 0.00 0.00 0.00 2.90
637 638 5.293079 GGAAGTGTGTCTAGAAATGATGAGC 59.707 44.000 0.00 0.00 0.00 4.26
638 639 5.674052 AGTGTGTCTAGAAATGATGAGCT 57.326 39.130 0.00 0.00 0.00 4.09
639 640 5.659463 AGTGTGTCTAGAAATGATGAGCTC 58.341 41.667 6.82 6.82 0.00 4.09
640 641 5.421693 AGTGTGTCTAGAAATGATGAGCTCT 59.578 40.000 16.19 0.00 0.00 4.09
641 642 5.748152 GTGTGTCTAGAAATGATGAGCTCTC 59.252 44.000 16.19 10.43 0.00 3.20
642 643 4.975502 GTGTCTAGAAATGATGAGCTCTCG 59.024 45.833 16.19 0.00 0.00 4.04
643 644 4.642437 TGTCTAGAAATGATGAGCTCTCGT 59.358 41.667 16.19 8.52 0.00 4.18
644 645 5.126222 TGTCTAGAAATGATGAGCTCTCGTT 59.874 40.000 16.19 13.75 0.00 3.85
645 646 6.039616 GTCTAGAAATGATGAGCTCTCGTTT 58.960 40.000 22.50 22.50 35.18 3.60
646 647 6.533367 GTCTAGAAATGATGAGCTCTCGTTTT 59.467 38.462 22.87 16.80 33.20 2.43
647 648 5.542616 AGAAATGATGAGCTCTCGTTTTG 57.457 39.130 22.87 0.00 33.20 2.44
648 649 4.999950 AGAAATGATGAGCTCTCGTTTTGT 59.000 37.500 22.87 15.65 33.20 2.83
649 650 6.166279 AGAAATGATGAGCTCTCGTTTTGTA 58.834 36.000 22.87 2.00 33.20 2.41
650 651 6.312426 AGAAATGATGAGCTCTCGTTTTGTAG 59.688 38.462 22.87 0.00 33.20 2.74
651 652 4.783764 TGATGAGCTCTCGTTTTGTAGA 57.216 40.909 16.19 0.00 0.00 2.59
652 653 4.738124 TGATGAGCTCTCGTTTTGTAGAG 58.262 43.478 16.19 0.00 41.82 2.43
653 654 3.577649 TGAGCTCTCGTTTTGTAGAGG 57.422 47.619 16.19 0.00 39.73 3.69
711 751 1.893137 TGATACGAGACCTTGTGTGCT 59.107 47.619 0.00 0.00 0.00 4.40
950 1293 1.202348 GCAATCTAGAGAGCTGTCGCA 60.202 52.381 5.05 0.00 39.10 5.10
1073 1416 2.232298 GAGACGGAGACCTTGCCCAG 62.232 65.000 0.00 0.00 0.00 4.45
1201 1560 2.128035 CTGCGAGAGTCTGTTTCGTTT 58.872 47.619 0.00 0.00 36.74 3.60
1335 1722 2.267961 GGCGGTCGGACCTCAATT 59.732 61.111 23.86 0.00 35.66 2.32
1402 1798 4.019174 CCCAGAGTTGTAATCCATGCTTT 58.981 43.478 0.00 0.00 0.00 3.51
1465 1861 7.038531 AGGAGCAGATCTCTATATGGTTAGA 57.961 40.000 0.00 0.00 41.60 2.10
1791 2218 6.223852 AGGAAATAGAACATATAGGCACACG 58.776 40.000 0.00 0.00 0.00 4.49
2975 3807 3.436704 AGTCCGCAGATTTACACAACATG 59.563 43.478 0.00 0.00 0.00 3.21
3331 4164 1.609208 CACAAAAGGGTGGACCAGAG 58.391 55.000 0.00 0.00 43.89 3.35
3709 4542 5.520376 AATGGTTGTTCAAGACCTTTCTG 57.480 39.130 0.00 0.00 36.86 3.02
3713 4546 4.640647 GGTTGTTCAAGACCTTTCTGAAGT 59.359 41.667 0.00 0.00 33.08 3.01
3800 4633 5.505780 TCAAAGAAGTCTTTCCTCAAACCA 58.494 37.500 3.27 0.00 43.72 3.67
3924 4757 2.359967 GGGGTTCAGAGACTCCGGG 61.360 68.421 0.00 0.00 28.77 5.73
3950 4783 4.664150 TTTGAGGAAAAATGGTCCACAC 57.336 40.909 0.00 0.00 35.76 3.82
4023 4856 7.292846 TCGGAATTCGTCACTTGTGGATACA 62.293 44.000 0.00 0.00 42.31 2.29
4219 5052 7.109501 ACAATAGCACAATTCATACACTACCA 58.890 34.615 0.00 0.00 0.00 3.25
4527 5362 4.226427 TCAAGGAGATCCCAAGTCATTG 57.774 45.455 0.00 2.27 37.41 2.82
5023 6829 9.757227 TTATAGGTCAAGAAACAACAAAAATGG 57.243 29.630 0.00 0.00 0.00 3.16
5171 6977 7.714377 TGATGTTTTCATGTAGGTTTGCATTTT 59.286 29.630 0.00 0.00 41.05 1.82
5504 7455 7.880160 TTTTAGATGTGAATACAGGAATGGG 57.120 36.000 0.00 0.00 40.79 4.00
5603 7556 6.169800 ACCAATGTTTTAAGTTGTTGCTTGT 58.830 32.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.107312 AGAGGGAGACATGCACATGC 60.107 55.000 10.50 0.00 42.39 4.06
5 6 3.181457 ACATAGAGGGAGACATGCACATG 60.181 47.826 9.06 9.06 44.15 3.21
6 7 3.044156 ACATAGAGGGAGACATGCACAT 58.956 45.455 0.00 0.00 0.00 3.21
8 9 2.831333 CACATAGAGGGAGACATGCAC 58.169 52.381 0.00 0.00 0.00 4.57
10 11 1.542108 GGCACATAGAGGGAGACATGC 60.542 57.143 0.00 0.00 0.00 4.06
11 12 1.764723 TGGCACATAGAGGGAGACATG 59.235 52.381 0.00 0.00 0.00 3.21
12 13 2.045524 CTGGCACATAGAGGGAGACAT 58.954 52.381 0.00 0.00 38.20 3.06
13 14 1.273267 ACTGGCACATAGAGGGAGACA 60.273 52.381 0.00 0.00 38.20 3.41
14 15 1.410882 GACTGGCACATAGAGGGAGAC 59.589 57.143 0.00 0.00 38.20 3.36
15 16 1.289231 AGACTGGCACATAGAGGGAGA 59.711 52.381 0.00 0.00 38.20 3.71
16 17 1.411977 CAGACTGGCACATAGAGGGAG 59.588 57.143 0.00 0.00 38.20 4.30
17 18 1.489481 CAGACTGGCACATAGAGGGA 58.511 55.000 0.00 0.00 38.20 4.20
18 19 0.179062 GCAGACTGGCACATAGAGGG 60.179 60.000 4.26 0.00 38.20 4.30
19 20 0.829333 AGCAGACTGGCACATAGAGG 59.171 55.000 4.26 0.00 38.20 3.69
20 21 1.755959 AGAGCAGACTGGCACATAGAG 59.244 52.381 4.26 0.00 38.20 2.43
21 22 1.857965 AGAGCAGACTGGCACATAGA 58.142 50.000 4.26 0.00 38.20 1.98
22 23 2.277969 CAAGAGCAGACTGGCACATAG 58.722 52.381 4.26 0.00 38.20 2.23
23 24 1.065926 CCAAGAGCAGACTGGCACATA 60.066 52.381 4.26 0.00 38.20 2.29
24 25 0.322277 CCAAGAGCAGACTGGCACAT 60.322 55.000 4.26 0.00 38.20 3.21
25 26 1.071987 CCAAGAGCAGACTGGCACA 59.928 57.895 4.26 0.00 35.83 4.57
26 27 1.072159 ACCAAGAGCAGACTGGCAC 59.928 57.895 4.26 0.00 35.83 5.01
27 28 1.071987 CACCAAGAGCAGACTGGCA 59.928 57.895 4.26 0.00 35.83 4.92
28 29 0.536006 AACACCAAGAGCAGACTGGC 60.536 55.000 4.26 0.00 0.00 4.85
29 30 1.202687 TCAACACCAAGAGCAGACTGG 60.203 52.381 4.26 0.00 0.00 4.00
30 31 2.245159 TCAACACCAAGAGCAGACTG 57.755 50.000 0.00 0.00 0.00 3.51
31 32 3.144506 CAATCAACACCAAGAGCAGACT 58.855 45.455 0.00 0.00 0.00 3.24
32 33 2.351157 GCAATCAACACCAAGAGCAGAC 60.351 50.000 0.00 0.00 0.00 3.51
33 34 1.881973 GCAATCAACACCAAGAGCAGA 59.118 47.619 0.00 0.00 0.00 4.26
34 35 1.884579 AGCAATCAACACCAAGAGCAG 59.115 47.619 0.00 0.00 0.00 4.24
35 36 1.881973 GAGCAATCAACACCAAGAGCA 59.118 47.619 0.00 0.00 0.00 4.26
36 37 1.200948 GGAGCAATCAACACCAAGAGC 59.799 52.381 0.00 0.00 0.00 4.09
37 38 2.486982 CTGGAGCAATCAACACCAAGAG 59.513 50.000 0.00 0.00 0.00 2.85
38 39 2.106338 TCTGGAGCAATCAACACCAAGA 59.894 45.455 0.00 0.00 0.00 3.02
39 40 2.486982 CTCTGGAGCAATCAACACCAAG 59.513 50.000 0.00 0.00 0.00 3.61
40 41 2.106338 TCTCTGGAGCAATCAACACCAA 59.894 45.455 0.00 0.00 0.00 3.67
41 42 1.699083 TCTCTGGAGCAATCAACACCA 59.301 47.619 0.00 0.00 0.00 4.17
42 43 2.354259 CTCTCTGGAGCAATCAACACC 58.646 52.381 0.00 0.00 32.43 4.16
43 44 2.027745 TCCTCTCTGGAGCAATCAACAC 60.028 50.000 0.00 0.00 40.56 3.32
44 45 2.259917 TCCTCTCTGGAGCAATCAACA 58.740 47.619 0.00 0.00 40.56 3.33
56 57 2.166254 GCTCTCTCCAGTTTCCTCTCTG 59.834 54.545 0.00 0.00 0.00 3.35
57 58 2.225242 TGCTCTCTCCAGTTTCCTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
58 59 2.175202 TGCTCTCTCCAGTTTCCTCTC 58.825 52.381 0.00 0.00 0.00 3.20
59 60 2.317371 TGCTCTCTCCAGTTTCCTCT 57.683 50.000 0.00 0.00 0.00 3.69
60 61 3.333804 CTTTGCTCTCTCCAGTTTCCTC 58.666 50.000 0.00 0.00 0.00 3.71
61 62 2.039613 CCTTTGCTCTCTCCAGTTTCCT 59.960 50.000 0.00 0.00 0.00 3.36
62 63 2.431454 CCTTTGCTCTCTCCAGTTTCC 58.569 52.381 0.00 0.00 0.00 3.13
63 64 1.809547 GCCTTTGCTCTCTCCAGTTTC 59.190 52.381 0.00 0.00 33.53 2.78
64 65 1.143684 TGCCTTTGCTCTCTCCAGTTT 59.856 47.619 0.00 0.00 38.71 2.66
65 66 0.767375 TGCCTTTGCTCTCTCCAGTT 59.233 50.000 0.00 0.00 38.71 3.16
66 67 0.324285 CTGCCTTTGCTCTCTCCAGT 59.676 55.000 0.00 0.00 38.71 4.00
67 68 0.392729 CCTGCCTTTGCTCTCTCCAG 60.393 60.000 0.00 0.00 38.71 3.86
68 69 1.681666 CCTGCCTTTGCTCTCTCCA 59.318 57.895 0.00 0.00 38.71 3.86
69 70 1.748500 GCCTGCCTTTGCTCTCTCC 60.749 63.158 0.00 0.00 38.71 3.71
70 71 1.002868 TGCCTGCCTTTGCTCTCTC 60.003 57.895 0.00 0.00 38.71 3.20
71 72 1.303155 GTGCCTGCCTTTGCTCTCT 60.303 57.895 0.00 0.00 38.71 3.10
72 73 2.684843 CGTGCCTGCCTTTGCTCTC 61.685 63.158 0.00 0.00 38.71 3.20
73 74 2.670934 CGTGCCTGCCTTTGCTCT 60.671 61.111 0.00 0.00 38.71 4.09
74 75 2.669569 TCGTGCCTGCCTTTGCTC 60.670 61.111 0.00 0.00 38.71 4.26
75 76 2.980233 GTCGTGCCTGCCTTTGCT 60.980 61.111 0.00 0.00 38.71 3.91
76 77 4.043200 GGTCGTGCCTGCCTTTGC 62.043 66.667 0.00 0.00 38.26 3.68
77 78 2.594303 TGGTCGTGCCTGCCTTTG 60.594 61.111 1.06 0.00 38.35 2.77
78 79 2.281761 CTGGTCGTGCCTGCCTTT 60.282 61.111 1.06 0.00 38.35 3.11
89 90 0.672401 ATGTGGGTTAACGCTGGTCG 60.672 55.000 21.62 0.00 45.38 4.79
90 91 0.802494 CATGTGGGTTAACGCTGGTC 59.198 55.000 21.62 11.00 0.00 4.02
91 92 0.109723 ACATGTGGGTTAACGCTGGT 59.890 50.000 21.62 12.08 0.00 4.00
92 93 2.006888 CTACATGTGGGTTAACGCTGG 58.993 52.381 21.62 11.54 0.00 4.85
93 94 2.695359 ACTACATGTGGGTTAACGCTG 58.305 47.619 21.62 14.62 0.00 5.18
94 95 4.748277 ATACTACATGTGGGTTAACGCT 57.252 40.909 21.62 5.54 0.00 5.07
95 96 7.277098 CCATATATACTACATGTGGGTTAACGC 59.723 40.741 14.25 15.32 32.58 4.84
96 97 8.308931 ACCATATATACTACATGTGGGTTAACG 58.691 37.037 14.25 0.00 38.58 3.18
99 100 8.974238 GCTACCATATATACTACATGTGGGTTA 58.026 37.037 14.25 5.13 38.58 2.85
100 101 7.678598 AGCTACCATATATACTACATGTGGGTT 59.321 37.037 14.25 2.96 38.58 4.11
101 102 7.124298 CAGCTACCATATATACTACATGTGGGT 59.876 40.741 14.25 12.02 38.58 4.51
102 103 7.342026 TCAGCTACCATATATACTACATGTGGG 59.658 40.741 14.25 6.63 38.58 4.61
103 104 8.191446 GTCAGCTACCATATATACTACATGTGG 58.809 40.741 9.11 8.41 39.75 4.17
120 121 2.917905 TGCCTATGCAGGTCAGCTACC 61.918 57.143 0.00 4.67 44.23 3.18
121 122 0.465705 TGCCTATGCAGGTCAGCTAC 59.534 55.000 0.00 0.00 44.23 3.58
122 123 2.914908 TGCCTATGCAGGTCAGCTA 58.085 52.632 0.00 0.00 44.23 3.32
123 124 3.731547 TGCCTATGCAGGTCAGCT 58.268 55.556 0.00 0.00 44.23 4.24
139 140 5.695851 AAGAAAATAGTGGTGCAACTCTG 57.304 39.130 16.44 0.00 36.74 3.35
140 141 6.064717 AGAAAGAAAATAGTGGTGCAACTCT 58.935 36.000 11.64 11.64 36.74 3.24
141 142 6.319141 AGAAAGAAAATAGTGGTGCAACTC 57.681 37.500 2.04 0.00 36.74 3.01
142 143 6.096846 ACAAGAAAGAAAATAGTGGTGCAACT 59.903 34.615 2.04 0.00 36.74 3.16
143 144 6.198966 CACAAGAAAGAAAATAGTGGTGCAAC 59.801 38.462 0.00 0.00 0.00 4.17
144 145 6.272318 CACAAGAAAGAAAATAGTGGTGCAA 58.728 36.000 0.00 0.00 0.00 4.08
145 146 5.221224 CCACAAGAAAGAAAATAGTGGTGCA 60.221 40.000 0.00 0.00 40.00 4.57
146 147 5.222631 CCACAAGAAAGAAAATAGTGGTGC 58.777 41.667 0.00 0.00 40.00 5.01
150 151 6.018262 TGACGACCACAAGAAAGAAAATAGTG 60.018 38.462 0.00 0.00 0.00 2.74
151 152 6.018180 GTGACGACCACAAGAAAGAAAATAGT 60.018 38.462 7.60 0.00 45.03 2.12
152 153 6.363473 GTGACGACCACAAGAAAGAAAATAG 58.637 40.000 7.60 0.00 45.03 1.73
153 154 6.295039 GTGACGACCACAAGAAAGAAAATA 57.705 37.500 7.60 0.00 45.03 1.40
154 155 5.169836 GTGACGACCACAAGAAAGAAAAT 57.830 39.130 7.60 0.00 45.03 1.82
155 156 4.609691 GTGACGACCACAAGAAAGAAAA 57.390 40.909 7.60 0.00 45.03 2.29
166 167 0.389948 CCTTGCTAGGTGACGACCAC 60.390 60.000 5.98 0.00 45.98 4.16
167 168 0.541063 TCCTTGCTAGGTGACGACCA 60.541 55.000 14.12 0.00 45.98 4.02
168 169 0.606604 TTCCTTGCTAGGTGACGACC 59.393 55.000 14.12 0.00 42.60 4.79
169 170 2.094182 TGATTCCTTGCTAGGTGACGAC 60.094 50.000 14.12 2.72 42.60 4.34
170 171 2.166459 CTGATTCCTTGCTAGGTGACGA 59.834 50.000 14.12 0.00 42.60 4.20
171 172 2.166459 TCTGATTCCTTGCTAGGTGACG 59.834 50.000 14.12 1.31 42.60 4.35
172 173 3.895232 TCTGATTCCTTGCTAGGTGAC 57.105 47.619 14.12 7.11 42.60 3.67
173 174 4.908601 TTTCTGATTCCTTGCTAGGTGA 57.091 40.909 14.12 4.93 42.60 4.02
174 175 5.188434 TGATTTCTGATTCCTTGCTAGGTG 58.812 41.667 14.12 1.72 42.60 4.00
175 176 5.045286 ACTGATTTCTGATTCCTTGCTAGGT 60.045 40.000 14.12 0.00 42.60 3.08
176 177 5.435291 ACTGATTTCTGATTCCTTGCTAGG 58.565 41.667 8.03 8.03 43.46 3.02
177 178 5.526846 GGACTGATTTCTGATTCCTTGCTAG 59.473 44.000 0.00 0.00 0.00 3.42
178 179 5.045651 TGGACTGATTTCTGATTCCTTGCTA 60.046 40.000 0.00 0.00 0.00 3.49
179 180 4.263639 TGGACTGATTTCTGATTCCTTGCT 60.264 41.667 0.00 0.00 0.00 3.91
180 181 4.012374 TGGACTGATTTCTGATTCCTTGC 58.988 43.478 0.00 0.00 0.00 4.01
181 182 6.770746 AATGGACTGATTTCTGATTCCTTG 57.229 37.500 0.00 0.00 0.00 3.61
182 183 6.094603 CGAAATGGACTGATTTCTGATTCCTT 59.905 38.462 0.00 0.00 39.32 3.36
183 184 5.587844 CGAAATGGACTGATTTCTGATTCCT 59.412 40.000 0.00 0.00 39.32 3.36
184 185 5.220931 CCGAAATGGACTGATTTCTGATTCC 60.221 44.000 0.00 0.00 42.00 3.01
185 186 5.355350 ACCGAAATGGACTGATTTCTGATTC 59.645 40.000 0.00 0.00 42.00 2.52
186 187 5.124457 CACCGAAATGGACTGATTTCTGATT 59.876 40.000 0.00 0.00 42.00 2.57
187 188 4.637534 CACCGAAATGGACTGATTTCTGAT 59.362 41.667 0.00 0.00 42.00 2.90
188 189 4.002982 CACCGAAATGGACTGATTTCTGA 58.997 43.478 0.00 0.00 42.00 3.27
189 190 3.753272 ACACCGAAATGGACTGATTTCTG 59.247 43.478 0.00 0.00 42.00 3.02
190 191 4.021102 ACACCGAAATGGACTGATTTCT 57.979 40.909 0.00 0.00 42.00 2.52
191 192 5.175859 TCTACACCGAAATGGACTGATTTC 58.824 41.667 0.00 0.00 42.00 2.17
192 193 5.160607 TCTACACCGAAATGGACTGATTT 57.839 39.130 0.00 0.00 42.00 2.17
193 194 4.819105 TCTACACCGAAATGGACTGATT 57.181 40.909 0.00 0.00 42.00 2.57
194 195 4.819105 TTCTACACCGAAATGGACTGAT 57.181 40.909 0.00 0.00 42.00 2.90
195 196 4.610605 TTTCTACACCGAAATGGACTGA 57.389 40.909 0.00 0.00 42.00 3.41
196 197 5.880054 ATTTTCTACACCGAAATGGACTG 57.120 39.130 0.00 0.00 42.00 3.51
197 198 7.989416 TTAATTTTCTACACCGAAATGGACT 57.011 32.000 0.00 0.00 42.00 3.85
198 199 7.220108 GCATTAATTTTCTACACCGAAATGGAC 59.780 37.037 0.00 0.00 42.00 4.02
199 200 7.122055 AGCATTAATTTTCTACACCGAAATGGA 59.878 33.333 0.00 0.00 42.00 3.41
200 201 7.220683 CAGCATTAATTTTCTACACCGAAATGG 59.779 37.037 0.00 0.00 46.41 3.16
201 202 7.754924 ACAGCATTAATTTTCTACACCGAAATG 59.245 33.333 0.00 0.00 33.33 2.32
202 203 7.826690 ACAGCATTAATTTTCTACACCGAAAT 58.173 30.769 0.00 0.00 33.33 2.17
203 204 7.209471 ACAGCATTAATTTTCTACACCGAAA 57.791 32.000 0.00 0.00 0.00 3.46
204 205 6.811253 ACAGCATTAATTTTCTACACCGAA 57.189 33.333 0.00 0.00 0.00 4.30
205 206 6.537301 CCTACAGCATTAATTTTCTACACCGA 59.463 38.462 0.00 0.00 0.00 4.69
206 207 6.537301 TCCTACAGCATTAATTTTCTACACCG 59.463 38.462 0.00 0.00 0.00 4.94
207 208 7.553044 AGTCCTACAGCATTAATTTTCTACACC 59.447 37.037 0.00 0.00 0.00 4.16
208 209 8.494016 AGTCCTACAGCATTAATTTTCTACAC 57.506 34.615 0.00 0.00 0.00 2.90
209 210 9.817809 CTAGTCCTACAGCATTAATTTTCTACA 57.182 33.333 0.00 0.00 0.00 2.74
210 211 9.819267 ACTAGTCCTACAGCATTAATTTTCTAC 57.181 33.333 0.00 0.00 0.00 2.59
211 212 9.817809 CACTAGTCCTACAGCATTAATTTTCTA 57.182 33.333 0.00 0.00 0.00 2.10
212 213 7.770897 CCACTAGTCCTACAGCATTAATTTTCT 59.229 37.037 0.00 0.00 0.00 2.52
213 214 7.553044 ACCACTAGTCCTACAGCATTAATTTTC 59.447 37.037 0.00 0.00 0.00 2.29
214 215 7.402862 ACCACTAGTCCTACAGCATTAATTTT 58.597 34.615 0.00 0.00 0.00 1.82
215 216 6.958767 ACCACTAGTCCTACAGCATTAATTT 58.041 36.000 0.00 0.00 0.00 1.82
216 217 6.561519 ACCACTAGTCCTACAGCATTAATT 57.438 37.500 0.00 0.00 0.00 1.40
217 218 6.561519 AACCACTAGTCCTACAGCATTAAT 57.438 37.500 0.00 0.00 0.00 1.40
218 219 6.368779 AAACCACTAGTCCTACAGCATTAA 57.631 37.500 0.00 0.00 0.00 1.40
219 220 7.484993 TTAAACCACTAGTCCTACAGCATTA 57.515 36.000 0.00 0.00 0.00 1.90
220 221 4.910458 AAACCACTAGTCCTACAGCATT 57.090 40.909 0.00 0.00 0.00 3.56
221 222 6.561519 ATTAAACCACTAGTCCTACAGCAT 57.438 37.500 0.00 0.00 0.00 3.79
222 223 6.014070 TGAATTAAACCACTAGTCCTACAGCA 60.014 38.462 0.00 0.00 0.00 4.41
223 224 6.313164 GTGAATTAAACCACTAGTCCTACAGC 59.687 42.308 0.00 0.00 0.00 4.40
224 225 6.817140 GGTGAATTAAACCACTAGTCCTACAG 59.183 42.308 0.00 0.00 37.65 2.74
225 226 6.270463 TGGTGAATTAAACCACTAGTCCTACA 59.730 38.462 8.14 0.00 42.82 2.74
226 227 6.704310 TGGTGAATTAAACCACTAGTCCTAC 58.296 40.000 8.14 0.00 42.82 3.18
227 228 6.727231 TCTGGTGAATTAAACCACTAGTCCTA 59.273 38.462 17.26 3.17 42.82 2.94
228 229 5.546499 TCTGGTGAATTAAACCACTAGTCCT 59.454 40.000 17.26 0.00 42.82 3.85
229 230 5.801380 TCTGGTGAATTAAACCACTAGTCC 58.199 41.667 17.26 0.00 42.82 3.85
230 231 7.606456 TCAATCTGGTGAATTAAACCACTAGTC 59.394 37.037 17.26 2.66 42.82 2.59
231 232 7.458397 TCAATCTGGTGAATTAAACCACTAGT 58.542 34.615 17.26 0.00 42.82 2.57
232 233 7.921786 TCAATCTGGTGAATTAAACCACTAG 57.078 36.000 13.92 13.92 42.82 2.57
233 234 8.877864 AATCAATCTGGTGAATTAAACCACTA 57.122 30.769 8.14 1.77 42.82 2.74
234 235 7.451255 TGAATCAATCTGGTGAATTAAACCACT 59.549 33.333 8.14 0.00 42.82 4.00
235 236 7.542130 GTGAATCAATCTGGTGAATTAAACCAC 59.458 37.037 8.14 0.00 42.82 4.16
236 237 7.309744 GGTGAATCAATCTGGTGAATTAAACCA 60.310 37.037 11.10 11.10 45.49 3.67
237 238 7.035612 GGTGAATCAATCTGGTGAATTAAACC 58.964 38.462 3.30 3.30 38.26 3.27
238 239 7.601856 TGGTGAATCAATCTGGTGAATTAAAC 58.398 34.615 0.00 0.00 0.00 2.01
239 240 7.773489 TGGTGAATCAATCTGGTGAATTAAA 57.227 32.000 0.00 0.00 0.00 1.52
240 241 7.959658 ATGGTGAATCAATCTGGTGAATTAA 57.040 32.000 0.00 0.00 0.00 1.40
241 242 9.473007 TTTATGGTGAATCAATCTGGTGAATTA 57.527 29.630 0.00 0.00 0.00 1.40
242 243 7.959658 TTATGGTGAATCAATCTGGTGAATT 57.040 32.000 0.00 0.00 0.00 2.17
243 244 7.959658 TTTATGGTGAATCAATCTGGTGAAT 57.040 32.000 0.00 0.00 0.00 2.57
244 245 7.959658 ATTTATGGTGAATCAATCTGGTGAA 57.040 32.000 0.00 0.00 0.00 3.18
245 246 9.645128 ATTATTTATGGTGAATCAATCTGGTGA 57.355 29.630 0.00 0.00 0.00 4.02
288 289 9.236006 ACTTTCTAATTATTCAATGCTCAGTGT 57.764 29.630 0.00 0.00 0.00 3.55
309 310 9.594038 CCGCAATATAATGTTACATGTACTTTC 57.406 33.333 4.68 0.00 0.00 2.62
310 311 8.564574 CCCGCAATATAATGTTACATGTACTTT 58.435 33.333 4.68 8.08 0.00 2.66
311 312 7.308348 GCCCGCAATATAATGTTACATGTACTT 60.308 37.037 4.68 2.68 0.00 2.24
312 313 6.148811 GCCCGCAATATAATGTTACATGTACT 59.851 38.462 4.68 0.00 0.00 2.73
313 314 6.148811 AGCCCGCAATATAATGTTACATGTAC 59.851 38.462 4.68 1.95 0.00 2.90
314 315 6.234920 AGCCCGCAATATAATGTTACATGTA 58.765 36.000 0.08 0.08 0.00 2.29
315 316 5.070001 AGCCCGCAATATAATGTTACATGT 58.930 37.500 2.69 2.69 0.00 3.21
316 317 5.412594 AGAGCCCGCAATATAATGTTACATG 59.587 40.000 0.00 0.00 0.00 3.21
317 318 5.560724 AGAGCCCGCAATATAATGTTACAT 58.439 37.500 0.00 0.00 0.00 2.29
318 319 4.968259 AGAGCCCGCAATATAATGTTACA 58.032 39.130 0.00 0.00 0.00 2.41
319 320 5.063564 GCTAGAGCCCGCAATATAATGTTAC 59.936 44.000 0.00 0.00 34.31 2.50
320 321 5.175859 GCTAGAGCCCGCAATATAATGTTA 58.824 41.667 0.00 0.00 34.31 2.41
321 322 4.003648 GCTAGAGCCCGCAATATAATGTT 58.996 43.478 0.00 0.00 34.31 2.71
322 323 3.600388 GCTAGAGCCCGCAATATAATGT 58.400 45.455 0.00 0.00 34.31 2.71
323 324 2.604914 CGCTAGAGCCCGCAATATAATG 59.395 50.000 0.00 0.00 37.91 1.90
324 325 2.233922 ACGCTAGAGCCCGCAATATAAT 59.766 45.455 0.00 0.00 37.91 1.28
325 326 1.616865 ACGCTAGAGCCCGCAATATAA 59.383 47.619 0.00 0.00 37.91 0.98
326 327 1.254026 ACGCTAGAGCCCGCAATATA 58.746 50.000 0.00 0.00 37.91 0.86
327 328 1.067776 GTACGCTAGAGCCCGCAATAT 60.068 52.381 0.00 0.00 37.91 1.28
328 329 0.313043 GTACGCTAGAGCCCGCAATA 59.687 55.000 0.00 0.00 37.91 1.90
329 330 1.067582 GTACGCTAGAGCCCGCAAT 59.932 57.895 0.00 0.00 37.91 3.56
330 331 0.749091 TAGTACGCTAGAGCCCGCAA 60.749 55.000 0.00 0.00 37.91 4.85
331 332 0.749091 TTAGTACGCTAGAGCCCGCA 60.749 55.000 0.00 0.00 37.91 5.69
332 333 0.383231 TTTAGTACGCTAGAGCCCGC 59.617 55.000 0.00 0.00 37.91 6.13
333 334 2.857592 TTTTAGTACGCTAGAGCCCG 57.142 50.000 0.00 0.00 37.91 6.13
334 335 7.600960 AGTAATATTTTAGTACGCTAGAGCCC 58.399 38.462 0.00 0.00 34.67 5.19
335 336 7.754475 GGAGTAATATTTTAGTACGCTAGAGCC 59.246 40.741 0.00 0.00 34.67 4.70
336 337 7.754475 GGGAGTAATATTTTAGTACGCTAGAGC 59.246 40.741 0.00 0.00 34.67 4.09
337 338 9.012161 AGGGAGTAATATTTTAGTACGCTAGAG 57.988 37.037 0.00 0.00 34.67 2.43
338 339 8.930846 AGGGAGTAATATTTTAGTACGCTAGA 57.069 34.615 0.00 0.00 34.67 2.43
339 340 9.012161 AGAGGGAGTAATATTTTAGTACGCTAG 57.988 37.037 0.00 0.00 34.67 3.42
340 341 8.790718 CAGAGGGAGTAATATTTTAGTACGCTA 58.209 37.037 0.00 0.00 34.67 4.26
341 342 7.287235 ACAGAGGGAGTAATATTTTAGTACGCT 59.713 37.037 0.00 0.00 34.67 5.07
342 343 7.432059 ACAGAGGGAGTAATATTTTAGTACGC 58.568 38.462 0.00 0.00 34.67 4.42
343 344 9.460906 GAACAGAGGGAGTAATATTTTAGTACG 57.539 37.037 0.00 0.00 34.67 3.67
344 345 9.761504 GGAACAGAGGGAGTAATATTTTAGTAC 57.238 37.037 0.00 0.00 0.00 2.73
345 346 9.496710 TGGAACAGAGGGAGTAATATTTTAGTA 57.503 33.333 0.00 0.00 0.00 1.82
346 347 8.265764 GTGGAACAGAGGGAGTAATATTTTAGT 58.734 37.037 0.00 0.00 41.80 2.24
347 348 8.265055 TGTGGAACAGAGGGAGTAATATTTTAG 58.735 37.037 0.00 0.00 45.67 1.85
348 349 8.153221 TGTGGAACAGAGGGAGTAATATTTTA 57.847 34.615 0.00 0.00 45.67 1.52
349 350 7.027874 TGTGGAACAGAGGGAGTAATATTTT 57.972 36.000 0.00 0.00 45.67 1.82
350 351 6.636454 TGTGGAACAGAGGGAGTAATATTT 57.364 37.500 0.00 0.00 45.67 1.40
370 371 0.452618 CTGTACGCGCCACAATTGTG 60.453 55.000 28.18 28.18 45.23 3.33
371 372 0.601576 TCTGTACGCGCCACAATTGT 60.602 50.000 5.73 4.92 0.00 2.71
372 373 0.726827 ATCTGTACGCGCCACAATTG 59.273 50.000 5.73 3.24 0.00 2.32
373 374 1.448985 AATCTGTACGCGCCACAATT 58.551 45.000 5.73 10.28 0.00 2.32
374 375 1.448985 AAATCTGTACGCGCCACAAT 58.551 45.000 5.73 4.85 0.00 2.71
375 376 2.081725 TAAATCTGTACGCGCCACAA 57.918 45.000 5.73 2.60 0.00 3.33
376 377 2.081725 TTAAATCTGTACGCGCCACA 57.918 45.000 5.73 10.29 0.00 4.17
377 378 3.458779 TTTTAAATCTGTACGCGCCAC 57.541 42.857 5.73 5.03 0.00 5.01
378 379 3.747010 TCTTTTTAAATCTGTACGCGCCA 59.253 39.130 5.73 1.61 0.00 5.69
379 380 4.330740 TCTTTTTAAATCTGTACGCGCC 57.669 40.909 5.73 0.00 0.00 6.53
380 381 6.663480 TTTTCTTTTTAAATCTGTACGCGC 57.337 33.333 5.73 0.00 0.00 6.86
410 411 9.545105 TCTGTAAACTTGATCAAAATTTGCAAT 57.455 25.926 23.63 7.37 0.00 3.56
411 412 8.939201 TCTGTAAACTTGATCAAAATTTGCAA 57.061 26.923 23.63 16.59 0.00 4.08
412 413 8.412456 TCTCTGTAAACTTGATCAAAATTTGCA 58.588 29.630 22.81 22.81 0.00 4.08
413 414 8.801715 TCTCTGTAAACTTGATCAAAATTTGC 57.198 30.769 20.17 19.24 0.00 3.68
543 544 8.836413 GCATCACTAACTATGCCAAAGTTTATA 58.164 33.333 0.00 0.00 42.13 0.98
544 545 7.707104 GCATCACTAACTATGCCAAAGTTTAT 58.293 34.615 0.00 0.00 42.13 1.40
545 546 7.083875 GCATCACTAACTATGCCAAAGTTTA 57.916 36.000 0.00 0.00 42.13 2.01
546 547 5.954335 GCATCACTAACTATGCCAAAGTTT 58.046 37.500 0.00 0.00 42.13 2.66
547 548 5.567138 GCATCACTAACTATGCCAAAGTT 57.433 39.130 0.00 1.71 42.13 2.66
555 556 8.032952 TGAAAAGTCAAGCATCACTAACTATG 57.967 34.615 0.00 0.00 0.00 2.23
556 557 8.621532 TTGAAAAGTCAAGCATCACTAACTAT 57.378 30.769 0.00 0.00 38.88 2.12
557 558 8.445275 TTTGAAAAGTCAAGCATCACTAACTA 57.555 30.769 0.00 0.00 44.49 2.24
558 559 6.942532 TTGAAAAGTCAAGCATCACTAACT 57.057 33.333 0.00 0.00 38.88 2.24
559 560 7.985634 TTTTGAAAAGTCAAGCATCACTAAC 57.014 32.000 0.00 0.00 44.49 2.34
560 561 8.250332 AGTTTTTGAAAAGTCAAGCATCACTAA 58.750 29.630 0.00 0.00 44.49 2.24
561 562 7.771183 AGTTTTTGAAAAGTCAAGCATCACTA 58.229 30.769 0.00 0.00 44.49 2.74
562 563 6.633856 AGTTTTTGAAAAGTCAAGCATCACT 58.366 32.000 0.00 0.00 44.49 3.41
563 564 6.753744 AGAGTTTTTGAAAAGTCAAGCATCAC 59.246 34.615 20.27 0.00 46.06 3.06
564 565 6.866480 AGAGTTTTTGAAAAGTCAAGCATCA 58.134 32.000 20.27 0.00 46.06 3.07
565 566 7.915397 TGTAGAGTTTTTGAAAAGTCAAGCATC 59.085 33.333 20.27 8.67 46.06 3.91
566 567 7.771183 TGTAGAGTTTTTGAAAAGTCAAGCAT 58.229 30.769 20.27 7.15 46.06 3.79
567 568 7.151999 TGTAGAGTTTTTGAAAAGTCAAGCA 57.848 32.000 20.27 14.28 46.06 3.91
568 569 7.306225 GCATGTAGAGTTTTTGAAAAGTCAAGC 60.306 37.037 20.27 13.93 46.06 4.01
569 570 7.701924 TGCATGTAGAGTTTTTGAAAAGTCAAG 59.298 33.333 20.27 9.88 46.06 3.02
570 571 7.487829 GTGCATGTAGAGTTTTTGAAAAGTCAA 59.512 33.333 20.27 9.99 46.06 3.18
571 572 6.972328 GTGCATGTAGAGTTTTTGAAAAGTCA 59.028 34.615 20.27 6.60 46.06 3.41
572 573 7.196331 AGTGCATGTAGAGTTTTTGAAAAGTC 58.804 34.615 13.57 13.57 44.72 3.01
573 574 7.100458 AGTGCATGTAGAGTTTTTGAAAAGT 57.900 32.000 0.00 0.00 34.41 2.66
574 575 8.128582 TGTAGTGCATGTAGAGTTTTTGAAAAG 58.871 33.333 0.00 0.00 0.00 2.27
575 576 7.990917 TGTAGTGCATGTAGAGTTTTTGAAAA 58.009 30.769 0.00 0.00 0.00 2.29
576 577 7.561021 TGTAGTGCATGTAGAGTTTTTGAAA 57.439 32.000 0.00 0.00 0.00 2.69
577 578 7.744087 ATGTAGTGCATGTAGAGTTTTTGAA 57.256 32.000 0.00 0.00 36.26 2.69
578 579 7.744087 AATGTAGTGCATGTAGAGTTTTTGA 57.256 32.000 0.00 0.00 37.96 2.69
579 580 9.494479 CATAATGTAGTGCATGTAGAGTTTTTG 57.506 33.333 0.00 0.00 37.96 2.44
580 581 8.677300 CCATAATGTAGTGCATGTAGAGTTTTT 58.323 33.333 0.00 0.00 37.96 1.94
581 582 8.046708 TCCATAATGTAGTGCATGTAGAGTTTT 58.953 33.333 0.00 0.00 37.96 2.43
582 583 7.564793 TCCATAATGTAGTGCATGTAGAGTTT 58.435 34.615 0.00 0.00 37.96 2.66
583 584 7.124573 TCCATAATGTAGTGCATGTAGAGTT 57.875 36.000 0.00 0.00 37.96 3.01
584 585 6.731292 TCCATAATGTAGTGCATGTAGAGT 57.269 37.500 0.00 0.00 37.96 3.24
585 586 6.144563 CGTTCCATAATGTAGTGCATGTAGAG 59.855 42.308 0.00 0.00 37.96 2.43
586 587 5.983118 CGTTCCATAATGTAGTGCATGTAGA 59.017 40.000 0.00 0.00 37.96 2.59
587 588 5.177511 CCGTTCCATAATGTAGTGCATGTAG 59.822 44.000 0.00 0.00 37.96 2.74
588 589 5.053811 CCGTTCCATAATGTAGTGCATGTA 58.946 41.667 0.00 0.00 37.96 2.29
589 590 3.876914 CCGTTCCATAATGTAGTGCATGT 59.123 43.478 0.00 0.00 37.96 3.21
590 591 4.126437 TCCGTTCCATAATGTAGTGCATG 58.874 43.478 0.00 0.00 37.96 4.06
591 592 4.380531 CTCCGTTCCATAATGTAGTGCAT 58.619 43.478 0.00 0.00 40.03 3.96
592 593 3.431626 CCTCCGTTCCATAATGTAGTGCA 60.432 47.826 0.00 0.00 0.00 4.57
593 594 3.131396 CCTCCGTTCCATAATGTAGTGC 58.869 50.000 0.00 0.00 0.00 4.40
594 595 4.665833 TCCTCCGTTCCATAATGTAGTG 57.334 45.455 0.00 0.00 0.00 2.74
595 596 4.715297 ACTTCCTCCGTTCCATAATGTAGT 59.285 41.667 0.00 0.00 0.00 2.73
596 597 5.050490 CACTTCCTCCGTTCCATAATGTAG 58.950 45.833 0.00 0.00 0.00 2.74
597 598 4.468510 ACACTTCCTCCGTTCCATAATGTA 59.531 41.667 0.00 0.00 0.00 2.29
598 599 3.263425 ACACTTCCTCCGTTCCATAATGT 59.737 43.478 0.00 0.00 0.00 2.71
599 600 3.623060 CACACTTCCTCCGTTCCATAATG 59.377 47.826 0.00 0.00 0.00 1.90
600 601 3.263425 ACACACTTCCTCCGTTCCATAAT 59.737 43.478 0.00 0.00 0.00 1.28
601 602 2.635915 ACACACTTCCTCCGTTCCATAA 59.364 45.455 0.00 0.00 0.00 1.90
602 603 2.232941 GACACACTTCCTCCGTTCCATA 59.767 50.000 0.00 0.00 0.00 2.74
603 604 1.002087 GACACACTTCCTCCGTTCCAT 59.998 52.381 0.00 0.00 0.00 3.41
604 605 0.391597 GACACACTTCCTCCGTTCCA 59.608 55.000 0.00 0.00 0.00 3.53
605 606 0.680061 AGACACACTTCCTCCGTTCC 59.320 55.000 0.00 0.00 0.00 3.62
606 607 2.818432 TCTAGACACACTTCCTCCGTTC 59.182 50.000 0.00 0.00 0.00 3.95
607 608 2.872732 TCTAGACACACTTCCTCCGTT 58.127 47.619 0.00 0.00 0.00 4.44
608 609 2.581216 TCTAGACACACTTCCTCCGT 57.419 50.000 0.00 0.00 0.00 4.69
609 610 3.936372 TTTCTAGACACACTTCCTCCG 57.064 47.619 0.00 0.00 0.00 4.63
610 611 5.407407 TCATTTCTAGACACACTTCCTCC 57.593 43.478 0.00 0.00 0.00 4.30
611 612 6.634805 TCATCATTTCTAGACACACTTCCTC 58.365 40.000 0.00 0.00 0.00 3.71
612 613 6.611613 TCATCATTTCTAGACACACTTCCT 57.388 37.500 0.00 0.00 0.00 3.36
613 614 5.293079 GCTCATCATTTCTAGACACACTTCC 59.707 44.000 0.00 0.00 0.00 3.46
614 615 6.105333 AGCTCATCATTTCTAGACACACTTC 58.895 40.000 0.00 0.00 0.00 3.01
615 616 6.047511 AGCTCATCATTTCTAGACACACTT 57.952 37.500 0.00 0.00 0.00 3.16
616 617 5.421693 AGAGCTCATCATTTCTAGACACACT 59.578 40.000 17.77 0.00 0.00 3.55
617 618 5.659463 AGAGCTCATCATTTCTAGACACAC 58.341 41.667 17.77 0.00 0.00 3.82
618 619 5.449725 CGAGAGCTCATCATTTCTAGACACA 60.450 44.000 17.77 0.00 0.00 3.72
619 620 4.975502 CGAGAGCTCATCATTTCTAGACAC 59.024 45.833 17.77 0.00 0.00 3.67
620 621 4.642437 ACGAGAGCTCATCATTTCTAGACA 59.358 41.667 17.77 0.00 0.00 3.41
621 622 5.181690 ACGAGAGCTCATCATTTCTAGAC 57.818 43.478 17.77 0.00 0.00 2.59
622 623 5.843673 AACGAGAGCTCATCATTTCTAGA 57.156 39.130 17.77 0.00 0.00 2.43
623 624 6.312426 ACAAAACGAGAGCTCATCATTTCTAG 59.688 38.462 17.77 7.91 0.00 2.43
624 625 6.166279 ACAAAACGAGAGCTCATCATTTCTA 58.834 36.000 17.77 0.00 0.00 2.10
625 626 4.999950 ACAAAACGAGAGCTCATCATTTCT 59.000 37.500 17.77 0.00 0.00 2.52
626 627 5.288543 ACAAAACGAGAGCTCATCATTTC 57.711 39.130 17.77 2.15 0.00 2.17
627 628 6.166279 TCTACAAAACGAGAGCTCATCATTT 58.834 36.000 17.77 8.72 0.00 2.32
628 629 5.724328 TCTACAAAACGAGAGCTCATCATT 58.276 37.500 17.77 2.62 0.00 2.57
629 630 5.330455 TCTACAAAACGAGAGCTCATCAT 57.670 39.130 17.77 0.00 0.00 2.45
630 631 4.380973 CCTCTACAAAACGAGAGCTCATCA 60.381 45.833 17.77 0.00 38.31 3.07
631 632 4.109050 CCTCTACAAAACGAGAGCTCATC 58.891 47.826 17.77 9.60 38.31 2.92
632 633 3.118956 CCCTCTACAAAACGAGAGCTCAT 60.119 47.826 17.77 0.29 38.31 2.90
633 634 2.231478 CCCTCTACAAAACGAGAGCTCA 59.769 50.000 17.77 0.00 38.31 4.26
634 635 2.231721 ACCCTCTACAAAACGAGAGCTC 59.768 50.000 5.27 5.27 38.31 4.09
635 636 2.028930 CACCCTCTACAAAACGAGAGCT 60.029 50.000 0.00 0.00 38.31 4.09
636 637 2.338500 CACCCTCTACAAAACGAGAGC 58.662 52.381 0.00 0.00 38.31 4.09
637 638 2.288825 TGCACCCTCTACAAAACGAGAG 60.289 50.000 0.00 0.00 39.18 3.20
638 639 1.689813 TGCACCCTCTACAAAACGAGA 59.310 47.619 0.00 0.00 0.00 4.04
639 640 2.163818 TGCACCCTCTACAAAACGAG 57.836 50.000 0.00 0.00 0.00 4.18
640 641 2.851263 ATGCACCCTCTACAAAACGA 57.149 45.000 0.00 0.00 0.00 3.85
641 642 4.271049 CAGATATGCACCCTCTACAAAACG 59.729 45.833 0.00 0.00 0.00 3.60
642 643 4.576463 CCAGATATGCACCCTCTACAAAAC 59.424 45.833 0.00 0.00 0.00 2.43
643 644 4.227300 ACCAGATATGCACCCTCTACAAAA 59.773 41.667 0.00 0.00 0.00 2.44
644 645 3.780294 ACCAGATATGCACCCTCTACAAA 59.220 43.478 0.00 0.00 0.00 2.83
645 646 3.134623 CACCAGATATGCACCCTCTACAA 59.865 47.826 0.00 0.00 0.00 2.41
646 647 2.700371 CACCAGATATGCACCCTCTACA 59.300 50.000 0.00 0.00 0.00 2.74
647 648 2.965831 TCACCAGATATGCACCCTCTAC 59.034 50.000 0.00 0.00 0.00 2.59
648 649 3.328535 TCACCAGATATGCACCCTCTA 57.671 47.619 0.00 0.00 0.00 2.43
649 650 2.180946 TCACCAGATATGCACCCTCT 57.819 50.000 0.00 0.00 0.00 3.69
650 651 3.307059 GGTATCACCAGATATGCACCCTC 60.307 52.174 0.00 0.00 38.88 4.30
651 652 2.639839 GGTATCACCAGATATGCACCCT 59.360 50.000 0.00 0.00 38.88 4.34
652 653 2.612972 CGGTATCACCAGATATGCACCC 60.613 54.545 0.00 0.00 38.47 4.61
653 654 2.299013 TCGGTATCACCAGATATGCACC 59.701 50.000 0.00 0.00 38.47 5.01
711 751 4.197750 GTCCCTCTAGTACAGATCGAACA 58.802 47.826 0.00 0.00 31.13 3.18
950 1293 3.039588 AAACGATTCGGCGCACGT 61.040 55.556 10.83 16.53 44.69 4.49
1073 1416 0.595310 GCCTCTTACCTGATCGTCGC 60.595 60.000 0.00 0.00 0.00 5.19
1335 1722 0.473755 ATCACCACAGCTGGACACAA 59.526 50.000 19.93 0.00 40.55 3.33
1791 2218 1.889170 CAAACAAAGAGGCCCCTTCTC 59.111 52.381 0.00 0.00 0.00 2.87
2285 2770 6.092122 TGTTAGTCAAACATTATTGAGCCTCG 59.908 38.462 0.00 0.00 43.22 4.63
2975 3807 1.912971 GTACACCACCATCCCCCTC 59.087 63.158 0.00 0.00 0.00 4.30
3331 4164 4.094294 TCACGCTTACTGCAACCAATATTC 59.906 41.667 0.00 0.00 43.06 1.75
3345 4178 9.422196 GACAATAATTCTGTAAATCACGCTTAC 57.578 33.333 0.00 0.00 0.00 2.34
3709 4542 1.541588 GCAACACCTCCCATTGACTTC 59.458 52.381 0.00 0.00 0.00 3.01
3713 4546 3.034924 GTGCAACACCTCCCATTGA 57.965 52.632 0.00 0.00 36.32 2.57
3924 4757 6.159293 GTGGACCATTTTTCCTCAAATTCTC 58.841 40.000 0.00 0.00 33.84 2.87
4023 4856 5.590259 AGAAATACGCCTTTGAAGTATGCAT 59.410 36.000 3.79 3.79 32.12 3.96
4219 5052 4.310022 ACTCCAAGTAGTCTCTAGCAGT 57.690 45.455 0.00 0.00 0.00 4.40
4301 5135 1.233019 CTATCCCTTGCGGCAATCAG 58.767 55.000 16.80 4.41 0.00 2.90
4461 5296 4.913355 TGATGATGTGGGAACAGGGTATAT 59.087 41.667 0.00 0.00 44.46 0.86
4527 5362 7.923414 AGTTTTGTCCACCTATGAAGAATAC 57.077 36.000 0.00 0.00 0.00 1.89
4915 5754 5.990668 ACCAGTTGAGTTATATTCACCTCC 58.009 41.667 0.00 0.00 0.00 4.30
5023 6829 2.139118 GCGCCATCTAATTCTCCTGAC 58.861 52.381 0.00 0.00 0.00 3.51
5163 6969 1.524848 CATGCTGGGCAAAAATGCAA 58.475 45.000 2.97 0.00 43.62 4.08
5171 6977 2.589720 CATATTCTCCATGCTGGGCAA 58.410 47.619 0.00 0.00 43.62 4.52
5352 7176 9.049523 GTCATTCATAGCATCAAAAGATCACTA 57.950 33.333 0.00 0.00 0.00 2.74
5355 7179 8.515695 AAGTCATTCATAGCATCAAAAGATCA 57.484 30.769 0.00 0.00 0.00 2.92
5440 7390 5.975693 TTTAGCGGGAATCTTGACAAAAT 57.024 34.783 0.00 0.00 0.00 1.82
5454 7404 4.377022 CCGACGATCAAAATATTTAGCGGG 60.377 45.833 11.90 2.78 0.00 6.13
5504 7455 3.826157 TGTGATCAACAGGAACCCATTTC 59.174 43.478 0.00 0.00 33.78 2.17
5603 7556 9.944376 ATTTAAAGTAAGCTCTCATCAGTACAA 57.056 29.630 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.