Multiple sequence alignment - TraesCS5B01G560400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G560400 chr5B 100.000 4211 0 0 1 4211 707135451 707131241 0.000000e+00 7777
1 TraesCS5B01G560400 chr5D 90.448 3486 199 66 767 4211 565974868 565978260 0.000000e+00 4470
2 TraesCS5B01G560400 chr5D 90.667 375 28 6 112 482 565974084 565974455 3.780000e-135 492
3 TraesCS5B01G560400 chr5D 83.616 177 24 3 4039 4210 420207804 420207980 1.210000e-35 161
4 TraesCS5B01G560400 chr4A 92.424 1320 75 10 1770 3066 607634159 607635476 0.000000e+00 1860
5 TraesCS5B01G560400 chr4A 88.036 1003 72 31 767 1752 607633066 607634037 0.000000e+00 1144
6 TraesCS5B01G560400 chr4A 87.895 760 76 10 3051 3805 607635492 607636240 0.000000e+00 880
7 TraesCS5B01G560400 chr4A 93.671 79 4 1 197 275 607632673 607632750 2.660000e-22 117
8 TraesCS5B01G560400 chr4A 90.789 76 3 3 1 76 607606945 607607016 9.640000e-17 99
9 TraesCS5B01G560400 chr1A 81.167 754 90 34 990 1725 216406309 216405590 3.680000e-155 558
10 TraesCS5B01G560400 chr3B 84.794 559 59 19 1179 1718 704299842 704300393 4.790000e-149 538
11 TraesCS5B01G560400 chr3B 91.875 320 13 2 1204 1523 59086705 59087011 6.470000e-118 435
12 TraesCS5B01G560400 chr3B 89.970 329 29 4 819 1146 59078380 59078705 5.030000e-114 422
13 TraesCS5B01G560400 chr3B 83.708 178 23 4 4039 4210 543093351 543093174 3.370000e-36 163
14 TraesCS5B01G560400 chr2A 84.483 174 21 4 4043 4210 19302759 19302932 2.600000e-37 167
15 TraesCS5B01G560400 chr2A 83.616 177 24 3 4038 4209 716156016 716156192 1.210000e-35 161
16 TraesCS5B01G560400 chr6D 83.708 178 23 4 4039 4210 9986473 9986650 3.370000e-36 163
17 TraesCS5B01G560400 chr6D 83.146 178 24 2 4039 4210 446730149 446729972 1.570000e-34 158
18 TraesCS5B01G560400 chr6D 83.051 177 25 3 4039 4210 84277071 84276895 5.640000e-34 156
19 TraesCS5B01G560400 chr6D 82.682 179 25 4 4038 4210 446735065 446734887 2.030000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G560400 chr5B 707131241 707135451 4210 True 7777.00 7777 100.0000 1 4211 1 chr5B.!!$R1 4210
1 TraesCS5B01G560400 chr5D 565974084 565978260 4176 False 2481.00 4470 90.5575 112 4211 2 chr5D.!!$F2 4099
2 TraesCS5B01G560400 chr4A 607632673 607636240 3567 False 1000.25 1860 90.5065 197 3805 4 chr4A.!!$F2 3608
3 TraesCS5B01G560400 chr1A 216405590 216406309 719 True 558.00 558 81.1670 990 1725 1 chr1A.!!$R1 735
4 TraesCS5B01G560400 chr3B 704299842 704300393 551 False 538.00 538 84.7940 1179 1718 1 chr3B.!!$F3 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.108992 TTCGTGCGGTCTGTATGGTC 60.109 55.0 0.00 0.0 0.0 4.02 F
38 39 0.172803 GCGGTCTGTATGGTCGAGTT 59.827 55.0 0.00 0.0 0.0 3.01 F
1759 2128 0.240145 TCCGTAGCATTCCTATCGCG 59.760 55.0 0.00 0.0 0.0 5.87 F
1992 2472 0.309922 TCGGAAGGTACGCGATGATC 59.690 55.0 15.93 4.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 2108 1.699343 GCGATAGGAATGCTACGGAC 58.301 55.000 0.00 0.0 0.00 4.79 R
1879 2359 4.563337 AAGAAAGGCCAGTTACGAAAAC 57.437 40.909 5.01 0.0 0.00 2.43 R
3005 3517 0.110238 CATTGTTCGTTGCTCCACCG 60.110 55.000 0.00 0.0 0.00 4.94 R
3543 4087 0.595095 GCAGTTCCTTGCAGACTTGG 59.405 55.000 0.00 0.0 43.53 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.910482 CCTCATTCATTTGTTTCGTGCG 59.090 45.455 0.00 0.00 0.00 5.34
22 23 2.910482 CTCATTCATTTGTTTCGTGCGG 59.090 45.455 0.00 0.00 0.00 5.69
23 24 2.292016 TCATTCATTTGTTTCGTGCGGT 59.708 40.909 0.00 0.00 0.00 5.68
24 25 2.392933 TTCATTTGTTTCGTGCGGTC 57.607 45.000 0.00 0.00 0.00 4.79
25 26 1.588674 TCATTTGTTTCGTGCGGTCT 58.411 45.000 0.00 0.00 0.00 3.85
26 27 1.262950 TCATTTGTTTCGTGCGGTCTG 59.737 47.619 0.00 0.00 0.00 3.51
27 28 1.002900 CATTTGTTTCGTGCGGTCTGT 60.003 47.619 0.00 0.00 0.00 3.41
28 29 1.937278 TTTGTTTCGTGCGGTCTGTA 58.063 45.000 0.00 0.00 0.00 2.74
29 30 2.157834 TTGTTTCGTGCGGTCTGTAT 57.842 45.000 0.00 0.00 0.00 2.29
30 31 1.424403 TGTTTCGTGCGGTCTGTATG 58.576 50.000 0.00 0.00 0.00 2.39
31 32 0.719465 GTTTCGTGCGGTCTGTATGG 59.281 55.000 0.00 0.00 0.00 2.74
32 33 0.319083 TTTCGTGCGGTCTGTATGGT 59.681 50.000 0.00 0.00 0.00 3.55
33 34 0.108992 TTCGTGCGGTCTGTATGGTC 60.109 55.000 0.00 0.00 0.00 4.02
34 35 1.872234 CGTGCGGTCTGTATGGTCG 60.872 63.158 0.00 0.00 0.00 4.79
35 36 1.509463 GTGCGGTCTGTATGGTCGA 59.491 57.895 0.00 0.00 0.00 4.20
36 37 0.525668 GTGCGGTCTGTATGGTCGAG 60.526 60.000 0.00 0.00 0.00 4.04
37 38 0.963856 TGCGGTCTGTATGGTCGAGT 60.964 55.000 0.00 0.00 0.00 4.18
38 39 0.172803 GCGGTCTGTATGGTCGAGTT 59.827 55.000 0.00 0.00 0.00 3.01
39 40 1.403780 GCGGTCTGTATGGTCGAGTTT 60.404 52.381 0.00 0.00 0.00 2.66
40 41 2.159338 GCGGTCTGTATGGTCGAGTTTA 60.159 50.000 0.00 0.00 0.00 2.01
41 42 3.674138 GCGGTCTGTATGGTCGAGTTTAA 60.674 47.826 0.00 0.00 0.00 1.52
42 43 4.679662 CGGTCTGTATGGTCGAGTTTAAT 58.320 43.478 0.00 0.00 0.00 1.40
43 44 5.107133 CGGTCTGTATGGTCGAGTTTAATT 58.893 41.667 0.00 0.00 0.00 1.40
44 45 5.579511 CGGTCTGTATGGTCGAGTTTAATTT 59.420 40.000 0.00 0.00 0.00 1.82
45 46 6.091713 CGGTCTGTATGGTCGAGTTTAATTTT 59.908 38.462 0.00 0.00 0.00 1.82
46 47 7.461918 GGTCTGTATGGTCGAGTTTAATTTTC 58.538 38.462 0.00 0.00 0.00 2.29
47 48 7.413767 GGTCTGTATGGTCGAGTTTAATTTTCC 60.414 40.741 0.00 0.00 0.00 3.13
48 49 7.333672 GTCTGTATGGTCGAGTTTAATTTTCCT 59.666 37.037 0.00 0.00 0.00 3.36
49 50 7.881232 TCTGTATGGTCGAGTTTAATTTTCCTT 59.119 33.333 0.00 0.00 0.00 3.36
50 51 9.158233 CTGTATGGTCGAGTTTAATTTTCCTTA 57.842 33.333 0.00 0.00 0.00 2.69
51 52 9.504708 TGTATGGTCGAGTTTAATTTTCCTTAA 57.495 29.630 0.00 0.00 0.00 1.85
52 53 9.764870 GTATGGTCGAGTTTAATTTTCCTTAAC 57.235 33.333 0.00 0.00 0.00 2.01
53 54 8.631480 ATGGTCGAGTTTAATTTTCCTTAACT 57.369 30.769 0.00 0.00 0.00 2.24
54 55 9.729281 ATGGTCGAGTTTAATTTTCCTTAACTA 57.271 29.630 0.00 0.00 0.00 2.24
55 56 9.211485 TGGTCGAGTTTAATTTTCCTTAACTAG 57.789 33.333 0.00 0.00 0.00 2.57
56 57 8.663025 GGTCGAGTTTAATTTTCCTTAACTAGG 58.337 37.037 0.00 0.00 46.27 3.02
57 58 9.212641 GTCGAGTTTAATTTTCCTTAACTAGGT 57.787 33.333 0.00 0.00 45.03 3.08
58 59 9.783081 TCGAGTTTAATTTTCCTTAACTAGGTT 57.217 29.630 0.00 0.00 45.03 3.50
67 68 9.755122 ATTTTCCTTAACTAGGTTAGCAAATCT 57.245 29.630 0.00 0.00 45.03 2.40
68 69 8.788325 TTTCCTTAACTAGGTTAGCAAATCTC 57.212 34.615 0.00 0.00 45.03 2.75
69 70 6.885922 TCCTTAACTAGGTTAGCAAATCTCC 58.114 40.000 0.00 0.00 45.03 3.71
70 71 6.672657 TCCTTAACTAGGTTAGCAAATCTCCT 59.327 38.462 0.00 0.00 45.03 3.69
71 72 6.987404 CCTTAACTAGGTTAGCAAATCTCCTC 59.013 42.308 0.00 0.00 39.39 3.71
72 73 4.657436 ACTAGGTTAGCAAATCTCCTCG 57.343 45.455 0.00 0.00 0.00 4.63
73 74 4.024670 ACTAGGTTAGCAAATCTCCTCGT 58.975 43.478 0.00 0.00 0.00 4.18
74 75 5.198965 ACTAGGTTAGCAAATCTCCTCGTA 58.801 41.667 0.00 0.00 0.00 3.43
75 76 5.834204 ACTAGGTTAGCAAATCTCCTCGTAT 59.166 40.000 0.00 0.00 0.00 3.06
76 77 5.615925 AGGTTAGCAAATCTCCTCGTATT 57.384 39.130 0.00 0.00 0.00 1.89
77 78 6.726490 AGGTTAGCAAATCTCCTCGTATTA 57.274 37.500 0.00 0.00 0.00 0.98
78 79 6.750148 AGGTTAGCAAATCTCCTCGTATTAG 58.250 40.000 0.00 0.00 0.00 1.73
79 80 5.405873 GGTTAGCAAATCTCCTCGTATTAGC 59.594 44.000 0.00 0.00 0.00 3.09
80 81 3.996480 AGCAAATCTCCTCGTATTAGCC 58.004 45.455 0.00 0.00 0.00 3.93
81 82 2.731976 GCAAATCTCCTCGTATTAGCCG 59.268 50.000 0.00 0.00 0.00 5.52
82 83 3.799232 GCAAATCTCCTCGTATTAGCCGT 60.799 47.826 0.00 0.00 0.00 5.68
83 84 3.644884 AATCTCCTCGTATTAGCCGTG 57.355 47.619 0.00 0.00 0.00 4.94
84 85 2.048444 TCTCCTCGTATTAGCCGTGT 57.952 50.000 0.00 0.00 0.00 4.49
85 86 1.674441 TCTCCTCGTATTAGCCGTGTG 59.326 52.381 0.00 0.00 0.00 3.82
86 87 1.674441 CTCCTCGTATTAGCCGTGTGA 59.326 52.381 0.00 0.00 0.00 3.58
87 88 2.093890 TCCTCGTATTAGCCGTGTGAA 58.906 47.619 0.00 0.00 0.00 3.18
88 89 2.492881 TCCTCGTATTAGCCGTGTGAAA 59.507 45.455 0.00 0.00 0.00 2.69
89 90 2.601763 CCTCGTATTAGCCGTGTGAAAC 59.398 50.000 0.00 0.00 37.35 2.78
173 174 8.807948 AGATGTAAACAACAACCAAGCTATAT 57.192 30.769 0.00 0.00 42.70 0.86
177 178 9.019656 TGTAAACAACAACCAAGCTATATCAAT 57.980 29.630 0.00 0.00 34.29 2.57
201 202 5.953183 TGTAGGAAATTAAGCACTTGCATG 58.047 37.500 3.62 0.00 45.16 4.06
202 203 5.476599 TGTAGGAAATTAAGCACTTGCATGT 59.523 36.000 3.62 0.00 45.16 3.21
217 222 4.446994 TGCATGTCACAACTTTTCAACA 57.553 36.364 0.00 0.00 0.00 3.33
222 227 3.120130 TGTCACAACTTTTCAACACGTCC 60.120 43.478 0.00 0.00 0.00 4.79
311 316 0.250381 CATGCCAGAGAGGAGGATGC 60.250 60.000 0.00 0.00 41.22 3.91
312 317 1.417288 ATGCCAGAGAGGAGGATGCC 61.417 60.000 0.00 0.00 41.22 4.40
314 319 1.344191 GCCAGAGAGGAGGATGCCTT 61.344 60.000 0.00 0.00 41.22 4.35
322 327 1.503542 GAGGATGCCTTGTTGCACG 59.496 57.895 0.00 0.00 45.48 5.34
330 335 2.203280 TTGTTGCACGGGTCCCTG 60.203 61.111 6.29 4.71 0.00 4.45
331 336 2.674563 CTTGTTGCACGGGTCCCTGA 62.675 60.000 6.29 0.00 0.00 3.86
350 355 4.338118 CCTGAAGAGTAGAGAGTGGATGAC 59.662 50.000 0.00 0.00 0.00 3.06
351 356 4.923415 TGAAGAGTAGAGAGTGGATGACA 58.077 43.478 0.00 0.00 0.00 3.58
421 426 9.338622 ACTTTGCTCAGTGTAGTTTATAAACTT 57.661 29.630 30.41 17.24 46.52 2.66
424 429 8.896320 TGCTCAGTGTAGTTTATAAACTTGAA 57.104 30.769 30.41 14.26 46.52 2.69
425 430 9.332502 TGCTCAGTGTAGTTTATAAACTTGAAA 57.667 29.630 30.41 17.33 46.52 2.69
436 441 8.631797 GTTTATAAACTTGAAACAAGGTACCCA 58.368 33.333 19.07 0.00 36.03 4.51
494 499 7.490000 ACAAGAATTCTACTAACCATCCTACG 58.510 38.462 8.75 0.00 0.00 3.51
495 500 7.341256 ACAAGAATTCTACTAACCATCCTACGA 59.659 37.037 8.75 0.00 0.00 3.43
499 504 6.446781 TTCTACTAACCATCCTACGAACTG 57.553 41.667 0.00 0.00 0.00 3.16
500 505 5.503927 TCTACTAACCATCCTACGAACTGT 58.496 41.667 0.00 0.00 0.00 3.55
504 509 2.811410 ACCATCCTACGAACTGTACCA 58.189 47.619 0.00 0.00 0.00 3.25
505 510 3.167485 ACCATCCTACGAACTGTACCAA 58.833 45.455 0.00 0.00 0.00 3.67
506 511 3.579586 ACCATCCTACGAACTGTACCAAA 59.420 43.478 0.00 0.00 0.00 3.28
508 513 3.665745 TCCTACGAACTGTACCAAACC 57.334 47.619 0.00 0.00 0.00 3.27
509 514 2.030007 TCCTACGAACTGTACCAAACCG 60.030 50.000 0.00 0.00 0.00 4.44
510 515 2.331194 CTACGAACTGTACCAAACCGG 58.669 52.381 0.00 0.00 42.50 5.28
511 516 0.249996 ACGAACTGTACCAAACCGGG 60.250 55.000 6.32 0.00 40.22 5.73
513 518 1.228337 AACTGTACCAAACCGGGCC 60.228 57.895 6.32 0.00 40.22 5.80
514 519 1.997256 AACTGTACCAAACCGGGCCA 61.997 55.000 6.32 0.00 40.22 5.36
515 520 1.969589 CTGTACCAAACCGGGCCAC 60.970 63.158 6.32 0.00 40.22 5.01
530 572 4.388499 CACGGCCCGTACTTGCCT 62.388 66.667 9.25 5.27 45.71 4.75
532 574 2.359478 CGGCCCGTACTTGCCTTT 60.359 61.111 17.30 0.00 45.71 3.11
534 576 2.340328 GGCCCGTACTTGCCTTTGG 61.340 63.158 13.59 0.00 44.46 3.28
536 578 0.679960 GCCCGTACTTGCCTTTGGAT 60.680 55.000 0.00 0.00 0.00 3.41
537 579 1.834188 CCCGTACTTGCCTTTGGATT 58.166 50.000 0.00 0.00 0.00 3.01
540 582 3.006430 CCCGTACTTGCCTTTGGATTTTT 59.994 43.478 0.00 0.00 0.00 1.94
541 583 4.234574 CCGTACTTGCCTTTGGATTTTTC 58.765 43.478 0.00 0.00 0.00 2.29
544 586 6.294286 CCGTACTTGCCTTTGGATTTTTCTTA 60.294 38.462 0.00 0.00 0.00 2.10
546 588 6.478512 ACTTGCCTTTGGATTTTTCTTACA 57.521 33.333 0.00 0.00 0.00 2.41
550 592 8.744568 TTGCCTTTGGATTTTTCTTACAAATT 57.255 26.923 0.00 0.00 31.51 1.82
551 593 8.152309 TGCCTTTGGATTTTTCTTACAAATTG 57.848 30.769 0.00 0.00 31.51 2.32
552 594 7.228308 TGCCTTTGGATTTTTCTTACAAATTGG 59.772 33.333 0.00 0.00 31.51 3.16
554 596 8.558700 CCTTTGGATTTTTCTTACAAATTGGTG 58.441 33.333 0.00 0.00 31.51 4.17
557 599 6.989169 TGGATTTTTCTTACAAATTGGTGTGG 59.011 34.615 0.00 0.00 32.75 4.17
559 601 7.877612 GGATTTTTCTTACAAATTGGTGTGGAT 59.122 33.333 0.00 0.00 32.75 3.41
560 602 9.271828 GATTTTTCTTACAAATTGGTGTGGATT 57.728 29.630 0.00 0.00 32.75 3.01
561 603 9.625747 ATTTTTCTTACAAATTGGTGTGGATTT 57.374 25.926 0.00 0.00 32.75 2.17
562 604 8.430801 TTTTCTTACAAATTGGTGTGGATTTG 57.569 30.769 0.00 7.13 44.68 2.32
565 607 2.224499 ACAAATTGGTGTGGATTTGGCC 60.224 45.455 0.00 0.00 43.89 5.36
566 608 1.727062 AATTGGTGTGGATTTGGCCA 58.273 45.000 0.00 0.00 35.02 5.36
578 620 1.270907 TTTGGCCACAAAACCACAGT 58.729 45.000 3.88 0.00 43.21 3.55
581 623 2.028130 TGGCCACAAAACCACAGTTAG 58.972 47.619 0.00 0.00 34.19 2.34
582 624 1.269569 GGCCACAAAACCACAGTTAGC 60.270 52.381 0.00 0.00 34.19 3.09
583 625 1.269569 GCCACAAAACCACAGTTAGCC 60.270 52.381 0.00 0.00 34.19 3.93
584 626 1.339929 CCACAAAACCACAGTTAGCCC 59.660 52.381 0.00 0.00 34.19 5.19
585 627 2.028130 CACAAAACCACAGTTAGCCCA 58.972 47.619 0.00 0.00 34.19 5.36
586 628 2.627699 CACAAAACCACAGTTAGCCCAT 59.372 45.455 0.00 0.00 34.19 4.00
588 630 3.709141 ACAAAACCACAGTTAGCCCATTT 59.291 39.130 0.00 0.00 34.19 2.32
589 631 4.163268 ACAAAACCACAGTTAGCCCATTTT 59.837 37.500 0.00 0.00 34.19 1.82
590 632 4.335400 AAACCACAGTTAGCCCATTTTG 57.665 40.909 0.00 0.00 34.19 2.44
591 633 1.618343 ACCACAGTTAGCCCATTTTGC 59.382 47.619 0.00 0.00 0.00 3.68
593 635 2.036992 CCACAGTTAGCCCATTTTGCAA 59.963 45.455 0.00 0.00 0.00 4.08
594 636 3.319755 CACAGTTAGCCCATTTTGCAAG 58.680 45.455 0.00 0.00 0.00 4.01
595 637 3.005684 CACAGTTAGCCCATTTTGCAAGA 59.994 43.478 0.00 0.00 0.00 3.02
614 760 2.772224 TGGCATTCCACCCTGCAT 59.228 55.556 0.00 0.00 40.18 3.96
615 761 1.078891 TGGCATTCCACCCTGCATT 59.921 52.632 0.00 0.00 40.18 3.56
617 763 1.434696 GCATTCCACCCTGCATTCG 59.565 57.895 0.00 0.00 38.28 3.34
618 764 1.031571 GCATTCCACCCTGCATTCGA 61.032 55.000 0.00 0.00 38.28 3.71
619 765 1.462616 CATTCCACCCTGCATTCGAA 58.537 50.000 0.00 0.00 0.00 3.71
620 766 1.818060 CATTCCACCCTGCATTCGAAA 59.182 47.619 0.00 0.00 0.00 3.46
621 767 1.988293 TTCCACCCTGCATTCGAAAA 58.012 45.000 0.00 0.00 0.00 2.29
622 768 2.214376 TCCACCCTGCATTCGAAAAT 57.786 45.000 0.00 0.00 0.00 1.82
623 769 1.818060 TCCACCCTGCATTCGAAAATG 59.182 47.619 0.00 0.00 44.31 2.32
635 781 6.436843 CATTCGAAAATGCTAAACCTACCT 57.563 37.500 0.00 0.00 36.15 3.08
636 782 7.548196 CATTCGAAAATGCTAAACCTACCTA 57.452 36.000 0.00 0.00 36.15 3.08
637 783 7.981142 CATTCGAAAATGCTAAACCTACCTAA 58.019 34.615 0.00 0.00 36.15 2.69
638 784 6.973229 TCGAAAATGCTAAACCTACCTAAC 57.027 37.500 0.00 0.00 0.00 2.34
639 785 5.876460 TCGAAAATGCTAAACCTACCTAACC 59.124 40.000 0.00 0.00 0.00 2.85
640 786 5.644636 CGAAAATGCTAAACCTACCTAACCA 59.355 40.000 0.00 0.00 0.00 3.67
641 787 6.402875 CGAAAATGCTAAACCTACCTAACCAC 60.403 42.308 0.00 0.00 0.00 4.16
642 788 3.986996 TGCTAAACCTACCTAACCACC 57.013 47.619 0.00 0.00 0.00 4.61
643 789 3.523792 TGCTAAACCTACCTAACCACCT 58.476 45.455 0.00 0.00 0.00 4.00
644 790 4.686891 TGCTAAACCTACCTAACCACCTA 58.313 43.478 0.00 0.00 0.00 3.08
645 791 4.467438 TGCTAAACCTACCTAACCACCTAC 59.533 45.833 0.00 0.00 0.00 3.18
646 792 4.467438 GCTAAACCTACCTAACCACCTACA 59.533 45.833 0.00 0.00 0.00 2.74
647 793 5.046376 GCTAAACCTACCTAACCACCTACAA 60.046 44.000 0.00 0.00 0.00 2.41
648 794 6.352479 GCTAAACCTACCTAACCACCTACAAT 60.352 42.308 0.00 0.00 0.00 2.71
649 795 5.688814 AACCTACCTAACCACCTACAATC 57.311 43.478 0.00 0.00 0.00 2.67
650 796 4.035814 ACCTACCTAACCACCTACAATCC 58.964 47.826 0.00 0.00 0.00 3.01
651 797 3.390311 CCTACCTAACCACCTACAATCCC 59.610 52.174 0.00 0.00 0.00 3.85
652 798 2.202707 ACCTAACCACCTACAATCCCC 58.797 52.381 0.00 0.00 0.00 4.81
653 799 2.226065 ACCTAACCACCTACAATCCCCT 60.226 50.000 0.00 0.00 0.00 4.79
654 800 2.172717 CCTAACCACCTACAATCCCCTG 59.827 54.545 0.00 0.00 0.00 4.45
655 801 0.331616 AACCACCTACAATCCCCTGC 59.668 55.000 0.00 0.00 0.00 4.85
656 802 0.844661 ACCACCTACAATCCCCTGCA 60.845 55.000 0.00 0.00 0.00 4.41
657 803 0.552848 CCACCTACAATCCCCTGCAT 59.447 55.000 0.00 0.00 0.00 3.96
658 804 1.063717 CCACCTACAATCCCCTGCATT 60.064 52.381 0.00 0.00 0.00 3.56
669 815 2.858768 TCCCCTGCATTCCCTAGAAAAT 59.141 45.455 0.00 0.00 35.09 1.82
696 842 4.327680 ACTCCTAAAATTGTGGACAGAGC 58.672 43.478 0.00 0.00 0.00 4.09
697 843 4.202461 ACTCCTAAAATTGTGGACAGAGCA 60.202 41.667 0.00 0.00 0.00 4.26
700 846 4.701651 CCTAAAATTGTGGACAGAGCATCA 59.298 41.667 0.00 0.00 37.82 3.07
720 866 6.457934 GCATCAGTCAGTCAACATCCTAAATG 60.458 42.308 0.00 0.00 0.00 2.32
730 891 8.316214 AGTCAACATCCTAAATGCAATTTTCAT 58.684 29.630 0.00 0.00 46.10 2.57
733 894 6.585416 ACATCCTAAATGCAATTTTCATCCC 58.415 36.000 0.00 0.00 46.10 3.85
735 896 6.617782 TCCTAAATGCAATTTTCATCCCAA 57.382 33.333 0.00 0.00 46.10 4.12
764 925 2.907458 AAATGGCAACCTAGGAAGCT 57.093 45.000 17.98 0.96 0.00 3.74
771 1052 2.735762 GCAACCTAGGAAGCTAGACACG 60.736 54.545 17.98 0.00 0.00 4.49
784 1065 3.005897 GCTAGACACGTGGACCATCATAT 59.994 47.826 21.57 0.00 0.00 1.78
788 1069 4.588951 AGACACGTGGACCATCATATATGT 59.411 41.667 21.57 0.00 0.00 2.29
789 1070 4.631131 ACACGTGGACCATCATATATGTG 58.369 43.478 21.57 9.73 0.00 3.21
791 1072 3.646162 ACGTGGACCATCATATATGTGGT 59.354 43.478 26.57 26.57 41.52 4.16
792 1073 3.996363 CGTGGACCATCATATATGTGGTG 59.004 47.826 29.19 19.11 40.08 4.17
793 1074 4.326826 GTGGACCATCATATATGTGGTGG 58.673 47.826 29.19 25.61 40.08 4.61
794 1075 4.041567 GTGGACCATCATATATGTGGTGGA 59.958 45.833 31.82 12.18 40.08 4.02
795 1076 4.851540 TGGACCATCATATATGTGGTGGAT 59.148 41.667 31.82 18.80 40.08 3.41
823 1106 6.377327 ACAAGATAAACCACAGAAACACAG 57.623 37.500 0.00 0.00 0.00 3.66
842 1131 1.225704 GGGCAGAGTGGATTGGAGG 59.774 63.158 0.00 0.00 0.00 4.30
884 1178 1.899437 GCGGGATCTCACTCCAACCA 61.899 60.000 0.00 0.00 37.01 3.67
1072 1366 1.112113 CTCCAGGCCTAACGCTCTAA 58.888 55.000 3.98 0.00 37.74 2.10
1380 1684 3.181377 GCTTCAATCGATTACTCTGCTCG 59.819 47.826 10.97 0.00 0.00 5.03
1381 1685 4.602006 CTTCAATCGATTACTCTGCTCGA 58.398 43.478 10.97 0.00 44.54 4.04
1382 1686 3.953766 TCAATCGATTACTCTGCTCGAC 58.046 45.455 10.97 0.00 43.40 4.20
1383 1687 3.628032 TCAATCGATTACTCTGCTCGACT 59.372 43.478 10.97 0.00 43.40 4.18
1384 1688 3.617540 ATCGATTACTCTGCTCGACTG 57.382 47.619 0.00 0.00 43.40 3.51
1385 1689 1.064208 TCGATTACTCTGCTCGACTGC 59.936 52.381 0.00 0.00 36.57 4.40
1386 1690 1.064803 CGATTACTCTGCTCGACTGCT 59.935 52.381 0.00 0.00 34.41 4.24
1387 1691 2.726633 GATTACTCTGCTCGACTGCTC 58.273 52.381 0.00 0.00 0.00 4.26
1408 1751 5.337169 GCTCTTCTCCTCAACATGTACTCTT 60.337 44.000 0.00 0.00 0.00 2.85
1409 1752 6.274157 TCTTCTCCTCAACATGTACTCTTC 57.726 41.667 0.00 0.00 0.00 2.87
1411 1754 6.495181 TCTTCTCCTCAACATGTACTCTTCTT 59.505 38.462 0.00 0.00 0.00 2.52
1412 1755 6.030548 TCTCCTCAACATGTACTCTTCTTG 57.969 41.667 0.00 0.00 0.00 3.02
1413 1756 5.540337 TCTCCTCAACATGTACTCTTCTTGT 59.460 40.000 0.00 0.00 0.00 3.16
1414 1757 5.541845 TCCTCAACATGTACTCTTCTTGTG 58.458 41.667 0.00 0.00 0.00 3.33
1530 1873 3.119602 TCGTCATGCTAAGTACGAGCTTT 60.120 43.478 19.50 8.12 39.25 3.51
1533 1876 4.501198 GTCATGCTAAGTACGAGCTTTCTC 59.499 45.833 19.50 6.94 40.76 2.87
1537 1880 4.864806 TGCTAAGTACGAGCTTTCTCAATG 59.135 41.667 19.50 0.00 40.76 2.82
1539 1882 5.348997 GCTAAGTACGAGCTTTCTCAATGTT 59.651 40.000 13.71 0.00 39.30 2.71
1544 1887 5.140747 ACGAGCTTTCTCAATGTTCTACT 57.859 39.130 0.00 0.00 39.30 2.57
1547 1890 6.809196 ACGAGCTTTCTCAATGTTCTACTAAG 59.191 38.462 0.00 0.00 39.30 2.18
1548 1891 6.809196 CGAGCTTTCTCAATGTTCTACTAAGT 59.191 38.462 0.00 0.00 39.30 2.24
1549 1892 7.008810 CGAGCTTTCTCAATGTTCTACTAAGTC 59.991 40.741 0.00 0.00 39.30 3.01
1550 1893 6.809196 AGCTTTCTCAATGTTCTACTAAGTCG 59.191 38.462 0.00 0.00 0.00 4.18
1567 1916 3.157087 AGTCGCCAAACAGAATTTCCAT 58.843 40.909 0.00 0.00 0.00 3.41
1759 2128 0.240145 TCCGTAGCATTCCTATCGCG 59.760 55.000 0.00 0.00 0.00 5.87
1835 2311 4.955811 AAACATAGACACTCTGGTCACA 57.044 40.909 0.00 0.00 40.29 3.58
1983 2463 1.668237 GTCTACGGAGTCGGAAGGTAC 59.332 57.143 4.48 0.00 43.93 3.34
1984 2464 0.654683 CTACGGAGTCGGAAGGTACG 59.345 60.000 4.48 0.00 43.93 3.67
1985 2465 1.369091 TACGGAGTCGGAAGGTACGC 61.369 60.000 4.48 0.00 43.93 4.42
1992 2472 0.309922 TCGGAAGGTACGCGATGATC 59.690 55.000 15.93 4.00 0.00 2.92
2082 2573 7.538334 TGCATTGATTCAAATTCAAGTAAGTCG 59.462 33.333 2.68 0.00 0.00 4.18
2084 2575 6.552859 TGATTCAAATTCAAGTAAGTCGCA 57.447 33.333 0.00 0.00 0.00 5.10
2152 2643 5.580691 CAGTATGCCTGAAATTAGTCGACAA 59.419 40.000 19.50 10.42 44.49 3.18
2163 2654 1.494824 AGTCGACAAACGCACCTTAC 58.505 50.000 19.50 0.00 42.26 2.34
2170 2661 1.529438 CAAACGCACCTTACATCGTGT 59.471 47.619 0.00 0.00 35.19 4.49
2173 2664 0.713883 CGCACCTTACATCGTGTGAC 59.286 55.000 0.00 0.00 41.89 3.67
2178 2669 1.732259 CCTTACATCGTGTGACAAGCC 59.268 52.381 0.00 0.00 0.00 4.35
2191 2682 4.038642 TGTGACAAGCCCTGAAATTAAACC 59.961 41.667 0.00 0.00 0.00 3.27
2194 2685 1.917872 AGCCCTGAAATTAAACCGCA 58.082 45.000 0.00 0.00 0.00 5.69
2199 2690 4.454161 GCCCTGAAATTAAACCGCAAAAAT 59.546 37.500 0.00 0.00 0.00 1.82
2287 2779 6.477053 TTTTGCTCTGCTCTGACTATCTAT 57.523 37.500 0.00 0.00 0.00 1.98
2310 2802 3.000815 CGTGGCACAGGTTTACAGT 57.999 52.632 19.09 0.00 41.80 3.55
2431 2923 8.937634 AGGGTTTACTACTTGTACAATATTCG 57.062 34.615 9.13 0.00 0.00 3.34
2462 2955 4.281435 TGGATGAAACTGATTGCAACACAT 59.719 37.500 0.00 2.33 0.00 3.21
2476 2969 4.761235 CAACACATGCTTCTTCTGTCAT 57.239 40.909 0.00 0.00 0.00 3.06
2489 2982 5.003804 TCTTCTGTCATTTTAAGCAGGGAC 58.996 41.667 0.00 0.00 0.00 4.46
2586 3089 4.487714 TGAGGTCAATGTATTCCAGGTC 57.512 45.455 0.00 0.00 0.00 3.85
2690 3201 8.635765 TTTTGCCACATCTTCTTAGTTAATCT 57.364 30.769 0.00 0.00 0.00 2.40
2691 3202 7.615582 TTGCCACATCTTCTTAGTTAATCTG 57.384 36.000 0.00 0.00 0.00 2.90
2692 3203 6.711277 TGCCACATCTTCTTAGTTAATCTGT 58.289 36.000 0.00 0.00 0.00 3.41
2693 3204 7.168219 TGCCACATCTTCTTAGTTAATCTGTT 58.832 34.615 0.00 0.00 0.00 3.16
2694 3205 7.334421 TGCCACATCTTCTTAGTTAATCTGTTC 59.666 37.037 0.00 0.00 0.00 3.18
2695 3206 7.334421 GCCACATCTTCTTAGTTAATCTGTTCA 59.666 37.037 0.00 0.00 0.00 3.18
2696 3207 9.388506 CCACATCTTCTTAGTTAATCTGTTCAT 57.611 33.333 0.00 0.00 0.00 2.57
2810 3321 2.767505 CCTCTGATATTGGTTACGGCC 58.232 52.381 0.00 0.00 0.00 6.13
2877 3389 2.835764 GTTTGTTATTCCCCCTTTCCCC 59.164 50.000 0.00 0.00 0.00 4.81
2881 3393 2.009186 TATTCCCCCTTTCCCCATGT 57.991 50.000 0.00 0.00 0.00 3.21
2886 3398 0.701731 CCCCTTTCCCCATGTACACA 59.298 55.000 0.00 0.00 0.00 3.72
2892 3404 4.339247 CCTTTCCCCATGTACACATTGATC 59.661 45.833 0.00 0.00 33.61 2.92
3029 3541 2.685388 TGGAGCAACGAACAATGTGAAA 59.315 40.909 0.00 0.00 0.00 2.69
3057 3569 7.117454 CGCAAAGTATGTTCCTTTAACTATCG 58.883 38.462 0.00 0.00 38.99 2.92
3059 3602 7.413657 GCAAAGTATGTTCCTTTAACTATCGCA 60.414 37.037 0.00 0.00 38.99 5.10
3075 3618 1.280710 TCGCACTCCATGTTACCCATT 59.719 47.619 0.00 0.00 0.00 3.16
3272 3816 2.246719 AGCATATCTTGTCGCTTCCC 57.753 50.000 0.00 0.00 0.00 3.97
3273 3817 1.765314 AGCATATCTTGTCGCTTCCCT 59.235 47.619 0.00 0.00 0.00 4.20
3274 3818 1.869767 GCATATCTTGTCGCTTCCCTG 59.130 52.381 0.00 0.00 0.00 4.45
3275 3819 2.483714 GCATATCTTGTCGCTTCCCTGA 60.484 50.000 0.00 0.00 0.00 3.86
3306 3850 1.804601 GGGTGTCACTTTTACTCCCG 58.195 55.000 2.35 0.00 39.97 5.14
3461 4005 2.540931 GCAACTTTGATGCAAACAGTGG 59.459 45.455 0.00 0.00 43.29 4.00
3488 4032 5.086104 TCTTCATTAACAGGTAGGAGCAC 57.914 43.478 0.00 0.00 0.00 4.40
3523 4067 4.734398 TGGCCATTCATGTTTGGTAATC 57.266 40.909 0.00 6.56 35.34 1.75
3542 4086 7.395772 TGGTAATCAAGTGAGCAAATGGAATTA 59.604 33.333 0.00 0.00 33.67 1.40
3543 4087 7.702348 GGTAATCAAGTGAGCAAATGGAATTAC 59.298 37.037 0.00 0.00 33.67 1.89
3566 4110 1.133976 AGTCTGCAAGGAACTGCTTGT 60.134 47.619 11.89 0.00 40.86 3.16
3641 4185 4.657055 TGATTCACACGGATTAAATTGCG 58.343 39.130 0.00 0.00 36.43 4.85
3688 4232 5.172687 TGTGAGCCTATGACATTAAACCA 57.827 39.130 0.00 0.00 0.00 3.67
3748 4296 5.123979 CACGAATAAAAGGGGGAAAAGAGAG 59.876 44.000 0.00 0.00 0.00 3.20
3829 4378 3.242936 TGGTTTTTGTCTAACGAGCTTGC 60.243 43.478 0.00 0.00 0.00 4.01
3833 4382 0.312729 TGTCTAACGAGCTTGCGTCA 59.687 50.000 0.00 0.00 44.86 4.35
3841 4390 1.129251 CGAGCTTGCGTCAAATCACAT 59.871 47.619 0.00 0.00 0.00 3.21
3842 4391 2.778659 GAGCTTGCGTCAAATCACATC 58.221 47.619 0.00 0.00 0.00 3.06
3897 4446 4.506758 CTCTAATTTTTGGGCCATTGTGG 58.493 43.478 7.26 0.00 41.55 4.17
3955 4504 7.811282 TCCACTAAAAATATATCTGCCTTCCA 58.189 34.615 0.00 0.00 0.00 3.53
3968 4517 4.588106 TCTGCCTTCCATTTTGTGAAATCA 59.412 37.500 0.00 0.00 33.25 2.57
3984 4533 7.872163 GTGAAATCACATTTGCATGAACTAA 57.128 32.000 8.63 0.00 45.75 2.24
4000 4549 5.556915 TGAACTAAAAGGTGTCCCTGTATG 58.443 41.667 0.00 0.00 41.56 2.39
4025 4574 3.416156 ATCGAAGAAGAAAGCTGGCTTT 58.584 40.909 18.74 18.74 44.73 3.51
4053 4602 6.268847 ACTTGGTTTATGTTGGGAATTAGCAA 59.731 34.615 0.00 0.00 0.00 3.91
4086 4635 8.097038 ACACTTGTGATGAACTGAATACTACAT 58.903 33.333 7.83 0.00 0.00 2.29
4131 4680 7.035840 TCCATGTACTAACTAAAGGATCGTC 57.964 40.000 0.00 0.00 0.00 4.20
4140 4689 1.641577 AAAGGATCGTCGCTTAGCAC 58.358 50.000 4.70 0.94 0.00 4.40
4146 4695 2.158959 CGTCGCTTAGCACGGAAGG 61.159 63.158 16.93 0.00 32.64 3.46
4147 4696 1.214589 GTCGCTTAGCACGGAAGGA 59.785 57.895 4.70 0.00 0.00 3.36
4151 4700 1.519408 GCTTAGCACGGAAGGAAACA 58.481 50.000 0.00 0.00 0.00 2.83
4161 4710 4.016444 ACGGAAGGAAACATATGCAACAT 58.984 39.130 1.58 0.00 0.00 2.71
4170 4719 9.743581 AGGAAACATATGCAACATCATATATGA 57.256 29.630 17.56 17.56 37.50 2.15
4174 4723 9.524496 AACATATGCAACATCATATATGAAGGT 57.476 29.630 19.03 16.36 40.69 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.910482 CGCACGAAACAAATGAATGAGG 59.090 45.455 0.00 0.00 0.00 3.86
1 2 2.910482 CCGCACGAAACAAATGAATGAG 59.090 45.455 0.00 0.00 0.00 2.90
2 3 2.292016 ACCGCACGAAACAAATGAATGA 59.708 40.909 0.00 0.00 0.00 2.57
4 5 2.552315 AGACCGCACGAAACAAATGAAT 59.448 40.909 0.00 0.00 0.00 2.57
5 6 1.944024 AGACCGCACGAAACAAATGAA 59.056 42.857 0.00 0.00 0.00 2.57
6 7 1.262950 CAGACCGCACGAAACAAATGA 59.737 47.619 0.00 0.00 0.00 2.57
7 8 1.002900 ACAGACCGCACGAAACAAATG 60.003 47.619 0.00 0.00 0.00 2.32
8 9 1.305201 ACAGACCGCACGAAACAAAT 58.695 45.000 0.00 0.00 0.00 2.32
9 10 1.937278 TACAGACCGCACGAAACAAA 58.063 45.000 0.00 0.00 0.00 2.83
10 11 1.795872 CATACAGACCGCACGAAACAA 59.204 47.619 0.00 0.00 0.00 2.83
11 12 1.424403 CATACAGACCGCACGAAACA 58.576 50.000 0.00 0.00 0.00 2.83
12 13 0.719465 CCATACAGACCGCACGAAAC 59.281 55.000 0.00 0.00 0.00 2.78
13 14 0.319083 ACCATACAGACCGCACGAAA 59.681 50.000 0.00 0.00 0.00 3.46
14 15 0.108992 GACCATACAGACCGCACGAA 60.109 55.000 0.00 0.00 0.00 3.85
15 16 1.509463 GACCATACAGACCGCACGA 59.491 57.895 0.00 0.00 0.00 4.35
16 17 1.872234 CGACCATACAGACCGCACG 60.872 63.158 0.00 0.00 0.00 5.34
17 18 0.525668 CTCGACCATACAGACCGCAC 60.526 60.000 0.00 0.00 0.00 5.34
18 19 0.963856 ACTCGACCATACAGACCGCA 60.964 55.000 0.00 0.00 0.00 5.69
19 20 0.172803 AACTCGACCATACAGACCGC 59.827 55.000 0.00 0.00 0.00 5.68
20 21 2.649331 AAACTCGACCATACAGACCG 57.351 50.000 0.00 0.00 0.00 4.79
21 22 6.980051 AAATTAAACTCGACCATACAGACC 57.020 37.500 0.00 0.00 0.00 3.85
22 23 7.333672 AGGAAAATTAAACTCGACCATACAGAC 59.666 37.037 0.00 0.00 0.00 3.51
23 24 7.391620 AGGAAAATTAAACTCGACCATACAGA 58.608 34.615 0.00 0.00 0.00 3.41
24 25 7.611213 AGGAAAATTAAACTCGACCATACAG 57.389 36.000 0.00 0.00 0.00 2.74
25 26 7.989416 AAGGAAAATTAAACTCGACCATACA 57.011 32.000 0.00 0.00 0.00 2.29
26 27 9.764870 GTTAAGGAAAATTAAACTCGACCATAC 57.235 33.333 0.00 0.00 0.00 2.39
27 28 9.729281 AGTTAAGGAAAATTAAACTCGACCATA 57.271 29.630 0.00 0.00 0.00 2.74
28 29 8.631480 AGTTAAGGAAAATTAAACTCGACCAT 57.369 30.769 0.00 0.00 0.00 3.55
29 30 9.211485 CTAGTTAAGGAAAATTAAACTCGACCA 57.789 33.333 0.00 0.00 0.00 4.02
47 48 6.697892 CGAGGAGATTTGCTAACCTAGTTAAG 59.302 42.308 0.00 0.00 0.00 1.85
48 49 6.154021 ACGAGGAGATTTGCTAACCTAGTTAA 59.846 38.462 0.00 0.00 34.07 2.01
49 50 5.655532 ACGAGGAGATTTGCTAACCTAGTTA 59.344 40.000 0.00 0.00 34.07 2.24
50 51 4.466726 ACGAGGAGATTTGCTAACCTAGTT 59.533 41.667 0.00 0.00 34.07 2.24
51 52 4.024670 ACGAGGAGATTTGCTAACCTAGT 58.975 43.478 0.00 0.00 33.23 2.57
52 53 4.657436 ACGAGGAGATTTGCTAACCTAG 57.343 45.455 0.00 0.00 0.00 3.02
53 54 6.726490 AATACGAGGAGATTTGCTAACCTA 57.274 37.500 0.00 0.00 0.00 3.08
54 55 5.615925 AATACGAGGAGATTTGCTAACCT 57.384 39.130 0.00 0.00 0.00 3.50
55 56 5.405873 GCTAATACGAGGAGATTTGCTAACC 59.594 44.000 0.00 0.00 33.02 2.85
56 57 5.405873 GGCTAATACGAGGAGATTTGCTAAC 59.594 44.000 0.00 0.00 35.17 2.34
57 58 5.539048 GGCTAATACGAGGAGATTTGCTAA 58.461 41.667 0.00 0.00 35.17 3.09
58 59 4.321008 CGGCTAATACGAGGAGATTTGCTA 60.321 45.833 0.00 0.00 35.17 3.49
59 60 3.553096 CGGCTAATACGAGGAGATTTGCT 60.553 47.826 0.00 0.00 35.17 3.91
60 61 2.731976 CGGCTAATACGAGGAGATTTGC 59.268 50.000 0.00 0.00 34.39 3.68
61 62 3.736252 CACGGCTAATACGAGGAGATTTG 59.264 47.826 0.00 0.00 34.93 2.32
62 63 3.383825 ACACGGCTAATACGAGGAGATTT 59.616 43.478 0.00 0.00 34.93 2.17
63 64 2.957006 ACACGGCTAATACGAGGAGATT 59.043 45.455 0.00 0.00 34.93 2.40
64 65 2.293677 CACACGGCTAATACGAGGAGAT 59.706 50.000 0.00 0.00 34.93 2.75
65 66 1.674441 CACACGGCTAATACGAGGAGA 59.326 52.381 0.00 0.00 34.93 3.71
66 67 1.674441 TCACACGGCTAATACGAGGAG 59.326 52.381 0.00 0.00 34.93 3.69
67 68 1.753930 TCACACGGCTAATACGAGGA 58.246 50.000 0.00 0.00 34.93 3.71
68 69 2.572191 TTCACACGGCTAATACGAGG 57.428 50.000 0.00 0.00 34.93 4.63
69 70 3.060363 GTGTTTCACACGGCTAATACGAG 59.940 47.826 0.00 0.00 39.53 4.18
70 71 2.988493 GTGTTTCACACGGCTAATACGA 59.012 45.455 0.00 0.00 39.53 3.43
71 72 3.363788 GTGTTTCACACGGCTAATACG 57.636 47.619 0.00 0.00 39.53 3.06
134 135 8.699749 GTTGTTTACATCTTTGAATTAAGCCAC 58.300 33.333 0.00 0.00 0.00 5.01
145 146 6.042143 AGCTTGGTTGTTGTTTACATCTTTG 58.958 36.000 0.00 0.00 36.44 2.77
173 174 7.090173 GCAAGTGCTTAATTTCCTACAATTGA 58.910 34.615 13.59 0.00 35.73 2.57
177 178 6.015519 ACATGCAAGTGCTTAATTTCCTACAA 60.016 34.615 4.69 0.00 42.66 2.41
201 202 3.422655 GGACGTGTTGAAAAGTTGTGAC 58.577 45.455 0.00 0.00 0.00 3.67
202 203 2.420722 GGGACGTGTTGAAAAGTTGTGA 59.579 45.455 0.00 0.00 0.00 3.58
217 222 2.376225 TACCACCACCTGAGGGACGT 62.376 60.000 2.38 0.00 36.25 4.34
222 227 1.192428 GTACCTACCACCACCTGAGG 58.808 60.000 0.00 0.00 0.00 3.86
269 274 4.821589 CGACGGCTTGGAGGAGGC 62.822 72.222 0.00 0.00 38.73 4.70
292 297 0.250381 GCATCCTCCTCTCTGGCATG 60.250 60.000 0.00 0.00 35.26 4.06
311 316 2.983592 GGGACCCGTGCAACAAGG 60.984 66.667 0.00 0.00 35.74 3.61
312 317 2.113139 AGGGACCCGTGCAACAAG 59.887 61.111 4.40 0.00 35.74 3.16
314 319 2.674563 CTTCAGGGACCCGTGCAACA 62.675 60.000 4.40 0.00 35.74 3.33
322 327 2.024751 ACTCTCTACTCTTCAGGGACCC 60.025 54.545 0.59 0.59 0.00 4.46
330 335 5.189928 TCTGTCATCCACTCTCTACTCTTC 58.810 45.833 0.00 0.00 0.00 2.87
331 336 5.186256 TCTGTCATCCACTCTCTACTCTT 57.814 43.478 0.00 0.00 0.00 2.85
394 399 8.774586 AGTTTATAAACTACACTGAGCAAAGTG 58.225 33.333 25.85 15.13 46.75 3.16
449 454 8.141298 TCTTGTAATTGATTGTAGGTCTACCA 57.859 34.615 1.26 0.00 38.89 3.25
482 487 4.343231 TGGTACAGTTCGTAGGATGGTTA 58.657 43.478 0.00 0.00 0.00 2.85
483 488 3.167485 TGGTACAGTTCGTAGGATGGTT 58.833 45.455 0.00 0.00 0.00 3.67
487 492 3.367703 CGGTTTGGTACAGTTCGTAGGAT 60.368 47.826 0.00 0.00 42.39 3.24
490 495 2.331194 CCGGTTTGGTACAGTTCGTAG 58.669 52.381 0.00 0.00 42.39 3.51
491 496 1.000731 CCCGGTTTGGTACAGTTCGTA 59.999 52.381 0.00 0.00 42.39 3.43
492 497 0.249996 CCCGGTTTGGTACAGTTCGT 60.250 55.000 0.00 0.00 42.39 3.85
493 498 1.571215 GCCCGGTTTGGTACAGTTCG 61.571 60.000 0.00 0.00 42.39 3.95
494 499 1.239296 GGCCCGGTTTGGTACAGTTC 61.239 60.000 0.00 0.00 42.39 3.01
495 500 1.228337 GGCCCGGTTTGGTACAGTT 60.228 57.895 0.00 0.00 42.39 3.16
499 504 3.051479 CGTGGCCCGGTTTGGTAC 61.051 66.667 0.00 0.00 35.15 3.34
520 562 5.121221 AGAAAAATCCAAAGGCAAGTACG 57.879 39.130 0.00 0.00 0.00 3.67
522 564 7.589958 TGTAAGAAAAATCCAAAGGCAAGTA 57.410 32.000 0.00 0.00 0.00 2.24
524 566 7.784633 TTTGTAAGAAAAATCCAAAGGCAAG 57.215 32.000 0.00 0.00 0.00 4.01
530 572 8.887717 CACACCAATTTGTAAGAAAAATCCAAA 58.112 29.630 0.00 0.00 0.00 3.28
532 574 6.989169 CCACACCAATTTGTAAGAAAAATCCA 59.011 34.615 0.00 0.00 0.00 3.41
534 576 8.831715 ATCCACACCAATTTGTAAGAAAAATC 57.168 30.769 0.00 0.00 0.00 2.17
536 578 8.887717 CAAATCCACACCAATTTGTAAGAAAAA 58.112 29.630 0.00 0.00 37.83 1.94
537 579 7.497249 CCAAATCCACACCAATTTGTAAGAAAA 59.503 33.333 6.96 0.00 39.92 2.29
540 582 5.510520 GCCAAATCCACACCAATTTGTAAGA 60.511 40.000 6.96 0.00 39.92 2.10
541 583 4.690280 GCCAAATCCACACCAATTTGTAAG 59.310 41.667 6.96 0.00 39.92 2.34
544 586 2.224499 GGCCAAATCCACACCAATTTGT 60.224 45.455 0.00 0.00 39.92 2.83
546 588 2.053244 TGGCCAAATCCACACCAATTT 58.947 42.857 0.61 0.00 0.00 1.82
557 599 2.158971 ACTGTGGTTTTGTGGCCAAATC 60.159 45.455 7.24 0.00 40.14 2.17
559 601 1.270907 ACTGTGGTTTTGTGGCCAAA 58.729 45.000 7.24 0.00 38.77 3.28
560 602 1.270907 AACTGTGGTTTTGTGGCCAA 58.729 45.000 7.24 0.00 36.41 4.52
561 603 2.028130 CTAACTGTGGTTTTGTGGCCA 58.972 47.619 0.00 0.00 36.92 5.36
562 604 1.269569 GCTAACTGTGGTTTTGTGGCC 60.270 52.381 0.00 0.00 36.92 5.36
565 607 2.028130 TGGGCTAACTGTGGTTTTGTG 58.972 47.619 0.00 0.00 36.92 3.33
566 608 2.445682 TGGGCTAACTGTGGTTTTGT 57.554 45.000 0.00 0.00 36.92 2.83
567 609 4.335400 AAATGGGCTAACTGTGGTTTTG 57.665 40.909 0.00 0.00 36.92 2.44
568 610 4.702831 CAAAATGGGCTAACTGTGGTTTT 58.297 39.130 0.00 0.00 36.92 2.43
571 613 1.618343 GCAAAATGGGCTAACTGTGGT 59.382 47.619 0.00 0.00 0.00 4.16
574 616 3.230134 TCTTGCAAAATGGGCTAACTGT 58.770 40.909 0.00 0.00 0.00 3.55
575 617 3.256631 ACTCTTGCAAAATGGGCTAACTG 59.743 43.478 0.00 0.00 0.00 3.16
576 618 3.256631 CACTCTTGCAAAATGGGCTAACT 59.743 43.478 0.00 0.00 0.00 2.24
577 619 3.578688 CACTCTTGCAAAATGGGCTAAC 58.421 45.455 0.00 0.00 0.00 2.34
578 620 2.562298 CCACTCTTGCAAAATGGGCTAA 59.438 45.455 13.20 0.00 0.00 3.09
581 623 0.671472 GCCACTCTTGCAAAATGGGC 60.671 55.000 19.58 16.85 0.00 5.36
582 624 0.680618 TGCCACTCTTGCAAAATGGG 59.319 50.000 19.58 12.11 35.40 4.00
583 625 2.754946 ATGCCACTCTTGCAAAATGG 57.245 45.000 15.69 15.69 42.92 3.16
584 626 2.997986 GGAATGCCACTCTTGCAAAATG 59.002 45.455 0.00 0.00 42.92 2.32
585 627 2.633967 TGGAATGCCACTCTTGCAAAAT 59.366 40.909 0.00 0.00 42.92 1.82
586 628 2.037901 TGGAATGCCACTCTTGCAAAA 58.962 42.857 0.00 0.00 42.92 2.44
588 630 3.435846 TGGAATGCCACTCTTGCAA 57.564 47.368 0.00 0.00 42.92 4.08
614 760 6.372381 GGTTAGGTAGGTTTAGCATTTTCGAA 59.628 38.462 0.00 0.00 0.00 3.71
615 761 5.876460 GGTTAGGTAGGTTTAGCATTTTCGA 59.124 40.000 0.00 0.00 0.00 3.71
617 763 6.127814 GGTGGTTAGGTAGGTTTAGCATTTTC 60.128 42.308 0.00 0.00 0.00 2.29
618 764 5.713389 GGTGGTTAGGTAGGTTTAGCATTTT 59.287 40.000 0.00 0.00 0.00 1.82
619 765 5.014860 AGGTGGTTAGGTAGGTTTAGCATTT 59.985 40.000 0.00 0.00 0.00 2.32
620 766 4.538891 AGGTGGTTAGGTAGGTTTAGCATT 59.461 41.667 0.00 0.00 0.00 3.56
621 767 4.109320 AGGTGGTTAGGTAGGTTTAGCAT 58.891 43.478 0.00 0.00 0.00 3.79
622 768 3.523792 AGGTGGTTAGGTAGGTTTAGCA 58.476 45.455 0.00 0.00 0.00 3.49
623 769 4.467438 TGTAGGTGGTTAGGTAGGTTTAGC 59.533 45.833 0.00 0.00 0.00 3.09
624 770 6.610075 TTGTAGGTGGTTAGGTAGGTTTAG 57.390 41.667 0.00 0.00 0.00 1.85
625 771 6.156775 GGATTGTAGGTGGTTAGGTAGGTTTA 59.843 42.308 0.00 0.00 0.00 2.01
626 772 5.045359 GGATTGTAGGTGGTTAGGTAGGTTT 60.045 44.000 0.00 0.00 0.00 3.27
627 773 4.472470 GGATTGTAGGTGGTTAGGTAGGTT 59.528 45.833 0.00 0.00 0.00 3.50
628 774 4.035814 GGATTGTAGGTGGTTAGGTAGGT 58.964 47.826 0.00 0.00 0.00 3.08
629 775 3.390311 GGGATTGTAGGTGGTTAGGTAGG 59.610 52.174 0.00 0.00 0.00 3.18
630 776 3.390311 GGGGATTGTAGGTGGTTAGGTAG 59.610 52.174 0.00 0.00 0.00 3.18
631 777 3.014342 AGGGGATTGTAGGTGGTTAGGTA 59.986 47.826 0.00 0.00 0.00 3.08
632 778 2.202707 GGGGATTGTAGGTGGTTAGGT 58.797 52.381 0.00 0.00 0.00 3.08
633 779 2.172717 CAGGGGATTGTAGGTGGTTAGG 59.827 54.545 0.00 0.00 0.00 2.69
634 780 2.421529 GCAGGGGATTGTAGGTGGTTAG 60.422 54.545 0.00 0.00 0.00 2.34
635 781 1.562475 GCAGGGGATTGTAGGTGGTTA 59.438 52.381 0.00 0.00 0.00 2.85
636 782 0.331616 GCAGGGGATTGTAGGTGGTT 59.668 55.000 0.00 0.00 0.00 3.67
637 783 0.844661 TGCAGGGGATTGTAGGTGGT 60.845 55.000 0.00 0.00 0.00 4.16
638 784 0.552848 ATGCAGGGGATTGTAGGTGG 59.447 55.000 0.00 0.00 0.00 4.61
639 785 2.301346 GAATGCAGGGGATTGTAGGTG 58.699 52.381 0.00 0.00 0.00 4.00
640 786 1.215423 GGAATGCAGGGGATTGTAGGT 59.785 52.381 0.00 0.00 0.00 3.08
641 787 1.479389 GGGAATGCAGGGGATTGTAGG 60.479 57.143 0.00 0.00 0.00 3.18
642 788 1.496429 AGGGAATGCAGGGGATTGTAG 59.504 52.381 0.00 0.00 0.00 2.74
643 789 1.607225 AGGGAATGCAGGGGATTGTA 58.393 50.000 0.00 0.00 0.00 2.41
644 790 1.496429 CTAGGGAATGCAGGGGATTGT 59.504 52.381 0.00 0.00 0.00 2.71
645 791 1.776667 TCTAGGGAATGCAGGGGATTG 59.223 52.381 0.00 0.00 0.00 2.67
646 792 2.212752 TCTAGGGAATGCAGGGGATT 57.787 50.000 0.00 0.00 0.00 3.01
647 793 2.212752 TTCTAGGGAATGCAGGGGAT 57.787 50.000 0.00 0.00 0.00 3.85
648 794 1.979809 TTTCTAGGGAATGCAGGGGA 58.020 50.000 0.00 0.00 0.00 4.81
649 795 2.826674 TTTTCTAGGGAATGCAGGGG 57.173 50.000 0.00 0.00 0.00 4.79
650 796 3.887716 CTGATTTTCTAGGGAATGCAGGG 59.112 47.826 0.00 0.00 0.00 4.45
651 797 3.887716 CCTGATTTTCTAGGGAATGCAGG 59.112 47.826 0.00 0.00 37.68 4.85
652 798 4.578105 GTCCTGATTTTCTAGGGAATGCAG 59.422 45.833 0.00 0.00 34.76 4.41
653 799 4.228210 AGTCCTGATTTTCTAGGGAATGCA 59.772 41.667 0.00 0.00 34.76 3.96
654 800 4.786425 AGTCCTGATTTTCTAGGGAATGC 58.214 43.478 0.00 0.00 34.76 3.56
655 801 5.131809 AGGAGTCCTGATTTTCTAGGGAATG 59.868 44.000 12.07 0.00 34.76 2.67
656 802 5.292815 AGGAGTCCTGATTTTCTAGGGAAT 58.707 41.667 12.07 0.00 34.76 3.01
657 803 4.699994 AGGAGTCCTGATTTTCTAGGGAA 58.300 43.478 12.07 0.00 34.76 3.97
658 804 4.354208 AGGAGTCCTGATTTTCTAGGGA 57.646 45.455 12.07 0.00 34.76 4.20
669 815 4.349636 TGTCCACAATTTTAGGAGTCCTGA 59.650 41.667 22.69 11.28 34.61 3.86
696 842 6.457934 GCATTTAGGATGTTGACTGACTGATG 60.458 42.308 0.00 0.00 0.00 3.07
697 843 5.587844 GCATTTAGGATGTTGACTGACTGAT 59.412 40.000 0.00 0.00 0.00 2.90
700 846 4.910195 TGCATTTAGGATGTTGACTGACT 58.090 39.130 0.00 0.00 0.00 3.41
705 851 7.887996 TGAAAATTGCATTTAGGATGTTGAC 57.112 32.000 0.00 0.00 0.00 3.18
741 902 3.555966 CTTCCTAGGTTGCCATTTAGGG 58.444 50.000 9.08 0.00 38.09 3.53
751 912 2.492484 ACGTGTCTAGCTTCCTAGGTTG 59.508 50.000 9.08 4.05 41.18 3.77
753 914 2.093106 CACGTGTCTAGCTTCCTAGGT 58.907 52.381 9.08 0.00 41.18 3.08
754 915 1.405821 CCACGTGTCTAGCTTCCTAGG 59.594 57.143 15.65 0.82 41.18 3.02
764 925 5.773176 ACATATATGATGGTCCACGTGTCTA 59.227 40.000 19.63 5.67 0.00 2.59
771 1052 4.041567 TCCACCACATATATGATGGTCCAC 59.958 45.833 24.99 0.00 38.91 4.02
784 1065 3.455849 TCTTGTACCCATCCACCACATA 58.544 45.455 0.00 0.00 0.00 2.29
788 1069 4.324719 GGTTTATCTTGTACCCATCCACCA 60.325 45.833 0.00 0.00 0.00 4.17
789 1070 4.204799 GGTTTATCTTGTACCCATCCACC 58.795 47.826 0.00 0.00 0.00 4.61
791 1072 4.289934 TGTGGTTTATCTTGTACCCATCCA 59.710 41.667 0.00 0.00 0.00 3.41
792 1073 4.850680 TGTGGTTTATCTTGTACCCATCC 58.149 43.478 0.00 0.00 0.00 3.51
793 1074 5.741011 TCTGTGGTTTATCTTGTACCCATC 58.259 41.667 0.00 0.00 0.00 3.51
794 1075 5.772393 TCTGTGGTTTATCTTGTACCCAT 57.228 39.130 0.00 0.00 0.00 4.00
795 1076 5.570205 TTCTGTGGTTTATCTTGTACCCA 57.430 39.130 0.00 0.00 0.00 4.51
823 1106 1.225704 CTCCAATCCACTCTGCCCC 59.774 63.158 0.00 0.00 0.00 5.80
842 1131 1.077858 CCCTGCCTTCCTCTGCTTC 60.078 63.158 0.00 0.00 0.00 3.86
875 1169 3.872603 TGTGGCGCTGGTTGGAGT 61.873 61.111 7.64 0.00 0.00 3.85
910 1204 1.151450 GGTGGGATATGGTGGGCTG 59.849 63.158 0.00 0.00 0.00 4.85
940 1234 0.457681 GTGAGTCAGCGGAGAGAAGC 60.458 60.000 0.00 0.00 0.00 3.86
1132 1427 4.538283 CGTCGAGATGGCGAGCGT 62.538 66.667 0.00 0.00 41.49 5.07
1163 1467 3.223589 GGAGGAGGAGGAGCGCTC 61.224 72.222 29.38 29.38 0.00 5.03
1332 1636 3.947868 AGAAGATGAATCAGTGGTGGTG 58.052 45.455 0.00 0.00 0.00 4.17
1335 1639 5.448768 GCATGAAGAAGATGAATCAGTGGTG 60.449 44.000 0.00 0.00 0.00 4.17
1336 1640 4.639310 GCATGAAGAAGATGAATCAGTGGT 59.361 41.667 0.00 0.00 0.00 4.16
1337 1641 4.882427 AGCATGAAGAAGATGAATCAGTGG 59.118 41.667 0.00 0.00 0.00 4.00
1380 1684 3.260740 CATGTTGAGGAGAAGAGCAGTC 58.739 50.000 0.00 0.00 0.00 3.51
1381 1685 2.636893 ACATGTTGAGGAGAAGAGCAGT 59.363 45.455 0.00 0.00 0.00 4.40
1382 1686 3.331478 ACATGTTGAGGAGAAGAGCAG 57.669 47.619 0.00 0.00 0.00 4.24
1383 1687 3.834813 AGTACATGTTGAGGAGAAGAGCA 59.165 43.478 2.30 0.00 0.00 4.26
1384 1688 4.159506 AGAGTACATGTTGAGGAGAAGAGC 59.840 45.833 2.30 0.00 0.00 4.09
1385 1689 5.913137 AGAGTACATGTTGAGGAGAAGAG 57.087 43.478 2.30 0.00 0.00 2.85
1386 1690 6.013379 AGAAGAGTACATGTTGAGGAGAAGA 58.987 40.000 2.30 0.00 0.00 2.87
1387 1691 6.279513 AGAAGAGTACATGTTGAGGAGAAG 57.720 41.667 2.30 0.00 0.00 2.85
1408 1751 2.092968 AGAAGGACTGCACAACACAAGA 60.093 45.455 0.00 0.00 0.00 3.02
1409 1752 2.292267 AGAAGGACTGCACAACACAAG 58.708 47.619 0.00 0.00 0.00 3.16
1411 1754 2.434336 AGTAGAAGGACTGCACAACACA 59.566 45.455 0.00 0.00 33.69 3.72
1412 1755 3.113260 AGTAGAAGGACTGCACAACAC 57.887 47.619 0.00 0.00 33.69 3.32
1413 1756 3.305131 CGTAGTAGAAGGACTGCACAACA 60.305 47.826 0.00 0.00 32.08 3.33
1414 1757 3.057736 TCGTAGTAGAAGGACTGCACAAC 60.058 47.826 0.00 0.00 32.08 3.32
1530 1873 4.461431 TGGCGACTTAGTAGAACATTGAGA 59.539 41.667 0.00 0.00 0.00 3.27
1533 1876 5.178623 TGTTTGGCGACTTAGTAGAACATTG 59.821 40.000 0.00 0.00 0.00 2.82
1537 1880 4.553323 TCTGTTTGGCGACTTAGTAGAAC 58.447 43.478 0.00 0.00 0.00 3.01
1539 1882 4.859304 TTCTGTTTGGCGACTTAGTAGA 57.141 40.909 0.00 0.00 0.00 2.59
1544 1887 4.138290 TGGAAATTCTGTTTGGCGACTTA 58.862 39.130 0.00 0.00 0.00 2.24
1547 1890 3.191371 AGATGGAAATTCTGTTTGGCGAC 59.809 43.478 0.00 0.00 0.00 5.19
1548 1891 3.420893 AGATGGAAATTCTGTTTGGCGA 58.579 40.909 0.00 0.00 0.00 5.54
1549 1892 3.855689 AGATGGAAATTCTGTTTGGCG 57.144 42.857 0.00 0.00 0.00 5.69
1550 1893 6.633856 ACAATAGATGGAAATTCTGTTTGGC 58.366 36.000 0.00 0.00 0.00 4.52
1567 1916 7.009179 ACAGAGGTCTGAATCAAACAATAGA 57.991 36.000 13.99 0.00 46.59 1.98
1583 1948 3.565902 CACCAGGAAAAAGAACAGAGGTC 59.434 47.826 0.00 0.00 0.00 3.85
1739 2108 1.699343 GCGATAGGAATGCTACGGAC 58.301 55.000 0.00 0.00 0.00 4.79
1759 2128 5.693814 CATGTCCTTTGTTAGTTTGCTCTC 58.306 41.667 0.00 0.00 0.00 3.20
1879 2359 4.563337 AAGAAAGGCCAGTTACGAAAAC 57.437 40.909 5.01 0.00 0.00 2.43
2011 2497 8.671921 AGAATGAAAATGTTACAGCAGAGTATG 58.328 33.333 0.00 0.00 0.00 2.39
2056 2547 7.538334 CGACTTACTTGAATTTGAATCAATGCA 59.462 33.333 0.00 0.00 36.30 3.96
2057 2548 7.461938 GCGACTTACTTGAATTTGAATCAATGC 60.462 37.037 0.00 0.00 36.30 3.56
2082 2573 2.571212 TCCATCCATACAAACCGATGC 58.429 47.619 0.00 0.00 32.49 3.91
2084 2575 5.551233 CAGTATCCATCCATACAAACCGAT 58.449 41.667 0.00 0.00 32.39 4.18
2152 2643 1.144969 CACACGATGTAAGGTGCGTT 58.855 50.000 0.00 0.00 37.68 4.84
2163 2654 0.320683 TCAGGGCTTGTCACACGATG 60.321 55.000 0.00 0.00 0.00 3.84
2170 2661 3.254657 CGGTTTAATTTCAGGGCTTGTCA 59.745 43.478 0.00 0.00 0.00 3.58
2173 2664 2.029470 TGCGGTTTAATTTCAGGGCTTG 60.029 45.455 0.00 0.00 0.00 4.01
2273 2765 5.402867 GCCACGTTTTATAGATAGTCAGAGC 59.597 44.000 0.00 0.00 0.00 4.09
2281 2773 5.347620 ACCTGTGCCACGTTTTATAGATA 57.652 39.130 0.00 0.00 0.00 1.98
2287 2779 3.276857 TGTAAACCTGTGCCACGTTTTA 58.723 40.909 6.24 0.07 32.28 1.52
2310 2802 3.824443 TCAAGTAGTCAACGGTCAGATCA 59.176 43.478 0.00 0.00 0.00 2.92
2431 2923 5.403466 GCAATCAGTTTCATCCAACTTGAAC 59.597 40.000 0.00 0.00 34.60 3.18
2462 2955 5.048504 CCTGCTTAAAATGACAGAAGAAGCA 60.049 40.000 13.71 13.71 43.93 3.91
2476 2969 3.857157 AGTCAGTGTCCCTGCTTAAAA 57.143 42.857 0.00 0.00 41.25 1.52
2532 3035 4.394300 AGCTCATCGATGAAAAAGAACCTG 59.606 41.667 27.09 13.35 36.18 4.00
2615 3118 7.920160 TGTTTATGTGAGTGCAATATTGAGA 57.080 32.000 19.73 1.55 0.00 3.27
2697 3208 9.317936 CAAAGTCAATTAGAAAAGGAAAAAGCT 57.682 29.630 0.00 0.00 0.00 3.74
2705 3216 9.868389 GAAAAATGCAAAGTCAATTAGAAAAGG 57.132 29.630 0.00 0.00 0.00 3.11
2810 3321 0.178975 TGGCCTTGGTTACCACTTGG 60.179 55.000 2.39 8.20 42.17 3.61
3005 3517 0.110238 CATTGTTCGTTGCTCCACCG 60.110 55.000 0.00 0.00 0.00 4.94
3029 3541 5.183140 AGTTAAAGGAACATACTTTGCGCAT 59.817 36.000 12.75 0.00 40.86 4.73
3057 3569 3.088532 TGAAATGGGTAACATGGAGTGC 58.911 45.455 0.00 0.00 40.44 4.40
3059 3602 4.289672 ACTCTGAAATGGGTAACATGGAGT 59.710 41.667 0.00 0.00 40.44 3.85
3127 3670 4.142687 ACTGGGAAGAAATAAAACATCGCG 60.143 41.667 0.00 0.00 0.00 5.87
3138 3681 3.492482 CCGTTTTGCAACTGGGAAGAAAT 60.492 43.478 0.00 0.00 0.00 2.17
3272 3816 3.055602 TGACACCCATCTGTCAATCTCAG 60.056 47.826 0.00 0.00 46.04 3.35
3273 3817 2.905736 TGACACCCATCTGTCAATCTCA 59.094 45.455 0.00 0.00 46.04 3.27
3274 3818 3.616956 TGACACCCATCTGTCAATCTC 57.383 47.619 0.00 0.00 46.04 2.75
3461 4005 5.488341 TCCTACCTGTTAATGAAGAAGTGC 58.512 41.667 0.00 0.00 0.00 4.40
3488 4032 1.817099 GGCCAACTCTGCATCTCGG 60.817 63.158 0.00 0.00 0.00 4.63
3523 4067 5.389859 TGGTAATTCCATTTGCTCACTTG 57.610 39.130 0.00 0.00 41.93 3.16
3542 4086 1.972872 CAGTTCCTTGCAGACTTGGT 58.027 50.000 0.00 0.00 0.00 3.67
3543 4087 0.595095 GCAGTTCCTTGCAGACTTGG 59.405 55.000 0.00 0.00 43.53 3.61
3688 4232 6.001449 TGGCCAAGACTACATATAAGCTTT 57.999 37.500 0.61 0.00 0.00 3.51
3748 4296 1.509923 GCCCTTGCAAGCACATCTC 59.490 57.895 21.43 0.61 37.47 2.75
3841 4390 2.965147 GCGCAATGAGCCACAACGA 61.965 57.895 0.30 0.00 41.38 3.85
3842 4391 2.502510 GCGCAATGAGCCACAACG 60.503 61.111 0.30 0.00 41.38 4.10
3924 4473 9.000486 GGCAGATATATTTTTAGTGGAAGGTAC 58.000 37.037 0.00 0.00 0.00 3.34
3968 4517 6.160576 ACACCTTTTAGTTCATGCAAATGT 57.839 33.333 0.00 0.00 0.00 2.71
4000 4549 3.063316 GCCAGCTTTCTTCTTCGATTCTC 59.937 47.826 0.00 0.00 0.00 2.87
4025 4574 8.308207 GCTAATTCCCAACATAAACCAAGTAAA 58.692 33.333 0.00 0.00 0.00 2.01
4053 4602 7.624360 TCAGTTCATCACAAGTGTACTTTTT 57.376 32.000 0.00 0.00 33.11 1.94
4058 4607 7.891183 AGTATTCAGTTCATCACAAGTGTAC 57.109 36.000 0.00 0.00 0.00 2.90
4086 4635 5.423931 TGGAGTGGTGCTGATATTACTTGTA 59.576 40.000 0.00 0.00 0.00 2.41
4131 4680 0.442699 GTTTCCTTCCGTGCTAAGCG 59.557 55.000 0.00 0.00 0.00 4.68
4140 4689 4.096231 TGATGTTGCATATGTTTCCTTCCG 59.904 41.667 4.29 0.00 0.00 4.30
4168 4717 9.727859 TGTGCTAAGTAACATATTTTACCTTCA 57.272 29.630 7.92 0.71 33.11 3.02
4170 4719 9.509956 TGTGTGCTAAGTAACATATTTTACCTT 57.490 29.630 7.92 5.40 33.11 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.