AutoCloner

Multiple sequence alignment - TraesCS5B01G558900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G558900	chr5B	100.000	2318	0	0	1	2318	706039828	706042145	0.000000e+00	4281
1	TraesCS5B01G558900	chr5B	93.209	1016	43	15	952	1948	116307206	116306198	0.000000e+00	1471
2	TraesCS5B01G558900	chr2A	97.645	1953	29	9	1	1948	492833513	492835453	0.000000e+00	3336
3	TraesCS5B01G558900	chr2A	88.851	296	14	4	1948	2224	655312517	655312222	1.700000e-91	346
4	TraesCS5B01G558900	chr2A	96.992	133	3	1	1948	2079	492835720	492835852	3.000000e-54	222
5	TraesCS5B01G558900	chr4B	97.134	1849	41	6	110	1953	361733687	361731846	0.000000e+00	3110
6	TraesCS5B01G558900	chr4B	93.722	1975	91	14	1	1948	221191618	221193586	0.000000e+00	2929
7	TraesCS5B01G558900	chr4B	96.909	1585	31	11	50	1631	243183352	243181783	0.000000e+00	2639
8	TraesCS5B01G558900	chr4B	90.977	399	35	1	1	398	564156343	564156741	9.430000e-149	536
9	TraesCS5B01G558900	chr4B	98.905	274	2	1	1948	2220	361731590	361731317	2.680000e-134	488
10	TraesCS5B01G558900	chr4B	96.727	275	8	1	1948	2221	243181238	243180964	7.550000e-125	457
11	TraesCS5B01G558900	chr3B	97.506	1804	36	6	1	1799	124769011	124767212	0.000000e+00	3073
12	TraesCS5B01G558900	chr3B	97.551	245	4	2	1948	2191	124766714	124766471	3.560000e-113	418
13	TraesCS5B01G558900	chr4A	97.290	1587	35	5	1	1583	90386835	90385253	0.000000e+00	2686
14	TraesCS5B01G558900	chr4A	97.551	245	4	2	1948	2191	90384448	90384205	3.560000e-113	418
15	TraesCS5B01G558900	chr1B	92.829	1785	85	18	206	1948	91886723	91884940	0.000000e+00	2547
16	TraesCS5B01G558900	chr5D	94.994	1578	54	11	395	1948	61458853	61460429	0.000000e+00	2453
17	TraesCS5B01G558900	chr5D	90.476	1323	72	12	395	1685	449410713	449409413	0.000000e+00	1696
18	TraesCS5B01G558900	chr5D	90.141	284	17	2	1948	2220	61460694	61460977	2.190000e-95	359
19	TraesCS5B01G558900	chr6D	94.641	1586	53	15	395	1948	59751320	59749735	0.000000e+00	2429
20	TraesCS5B01G558900	chr6D	94.667	1575	60	14	395	1948	352345989	352347560	0.000000e+00	2422
21	TraesCS5B01G558900	chr6D	93.363	1371	59	7	610	1948	173910678	173912048	0.000000e+00	1999
22	TraesCS5B01G558900	chr6D	91.930	285	12	2	1948	2221	59749469	59749185	2.790000e-104	388
23	TraesCS5B01G558900	chr6D	91.549	284	13	3	1948	2220	263996191	263995908	4.670000e-102	381
24	TraesCS5B01G558900	chr3D	92.511	1589	77	12	395	1948	282446102	282444521	0.000000e+00	2237
25	TraesCS5B01G558900	chr3D	91.729	399	32	1	1	398	562561543	562561941	9.360000e-154	553
26	TraesCS5B01G558900	chr3D	92.571	350	25	1	1	350	266653326	266653674	3.440000e-138	501
27	TraesCS5B01G558900	chr4D	92.365	799	31	9	392	1164	313007163	313007957	0.000000e+00	1110
28	TraesCS5B01G558900	chr4D	89.218	371	38	1	28	398	451040632	451041000	1.620000e-126	462
29	TraesCS5B01G558900	chr7D	87.532	393	31	8	9	394	545213778	545214159	2.730000e-119	438
30	TraesCS5B01G558900	chr7D	92.123	292	12	2	1948	2228	46097251	46096960	3.590000e-108	401
31	TraesCS5B01G558900	chr7B	92.254	284	11	2	1948	2220	102757620	102757337	2.160000e-105	392
32	TraesCS5B01G558900	chr7A	91.930	285	12	2	1948	2221	538296695	538296979	2.790000e-104	388
33	TraesCS5B01G558900	chr6B	91.901	284	12	2	1948	2220	623359530	623359247	1.000000e-103	387

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G558900	chr5B	706039828	706042145	2317	False	4281.0	4281	100.0000	1	2318	1	chr5B.!!$F1	2317
1	TraesCS5B01G558900	chr5B	116306198	116307206	1008	True	1471.0	1471	93.2090	952	1948	1	chr5B.!!$R1	996
2	TraesCS5B01G558900	chr2A	492833513	492835852	2339	False	1779.0	3336	97.3185	1	2079	2	chr2A.!!$F1	2078
3	TraesCS5B01G558900	chr4B	221191618	221193586	1968	False	2929.0	2929	93.7220	1	1948	1	chr4B.!!$F1	1947
4	TraesCS5B01G558900	chr4B	361731317	361733687	2370	True	1799.0	3110	98.0195	110	2220	2	chr4B.!!$R2	2110
5	TraesCS5B01G558900	chr4B	243180964	243183352	2388	True	1548.0	2639	96.8180	50	2221	2	chr4B.!!$R1	2171
6	TraesCS5B01G558900	chr3B	124766471	124769011	2540	True	1745.5	3073	97.5285	1	2191	2	chr3B.!!$R1	2190
7	TraesCS5B01G558900	chr4A	90384205	90386835	2630	True	1552.0	2686	97.4205	1	2191	2	chr4A.!!$R1	2190
8	TraesCS5B01G558900	chr1B	91884940	91886723	1783	True	2547.0	2547	92.8290	206	1948	1	chr1B.!!$R1	1742
9	TraesCS5B01G558900	chr5D	449409413	449410713	1300	True	1696.0	1696	90.4760	395	1685	1	chr5D.!!$R1	1290
10	TraesCS5B01G558900	chr5D	61458853	61460977	2124	False	1406.0	2453	92.5675	395	2220	2	chr5D.!!$F1	1825
11	TraesCS5B01G558900	chr6D	352345989	352347560	1571	False	2422.0	2422	94.6670	395	1948	1	chr6D.!!$F2	1553
12	TraesCS5B01G558900	chr6D	173910678	173912048	1370	False	1999.0	1999	93.3630	610	1948	1	chr6D.!!$F1	1338
13	TraesCS5B01G558900	chr6D	59749185	59751320	2135	True	1408.5	2429	93.2855	395	2221	2	chr6D.!!$R2	1826
14	TraesCS5B01G558900	chr3D	282444521	282446102	1581	True	2237.0	2237	92.5110	395	1948	1	chr3D.!!$R1	1553
15	TraesCS5B01G558900	chr4D	313007163	313007957	794	False	1110.0	1110	92.3650	392	1164	1	chr4D.!!$F1	772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
37	38	8.175716	GTGCTACTCATCCTAAATTGTGTTAAC	58.824	37.037	0.0	0.0	0.0	2.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1948	2220	0.246086	GTCTCACTGCTGTCCCTGAG	59.754	60.0	0.0	0.0	0.0	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	8.175716	GTGCTACTCATCCTAAATTGTGTTAAC	58.824	37.037	0.00	0.00	0.00	2.01
1234	1297	1.135603	GGTCTGACGTATGTGCGTGTA	60.136	52.381	0.00	0.00	45.79	2.90
1535	1620	2.230508	CACAATCCAGAAAGTGCATGCT	59.769	45.455	20.33	0.00	0.00	3.79
2221	2773	0.462047	GCAACCGGGTCATCTAGTGG	60.462	60.000	6.32	0.00	0.00	4.00
2222	2774	1.191535	CAACCGGGTCATCTAGTGGA	58.808	55.000	6.32	0.00	0.00	4.02
2223	2775	1.553248	CAACCGGGTCATCTAGTGGAA	59.447	52.381	6.32	0.00	0.00	3.53
2224	2776	2.170607	CAACCGGGTCATCTAGTGGAAT	59.829	50.000	6.32	0.00	0.00	3.01
2225	2777	1.762957	ACCGGGTCATCTAGTGGAATG	59.237	52.381	6.32	0.00	0.00	2.67
2226	2778	2.039418	CCGGGTCATCTAGTGGAATGA	58.961	52.381	0.00	0.00	0.00	2.57
2227	2779	2.434336	CCGGGTCATCTAGTGGAATGAA	59.566	50.000	0.00	0.00	0.00	2.57
2228	2780	3.071602	CCGGGTCATCTAGTGGAATGAAT	59.928	47.826	0.00	0.00	0.00	2.57
2229	2781	4.060900	CGGGTCATCTAGTGGAATGAATG	58.939	47.826	0.00	0.00	0.00	2.67
2230	2782	4.443457	CGGGTCATCTAGTGGAATGAATGT	60.443	45.833	0.00	0.00	0.00	2.71
2231	2783	5.440610	GGGTCATCTAGTGGAATGAATGTT	58.559	41.667	0.00	0.00	0.00	2.71
2232	2784	5.888161	GGGTCATCTAGTGGAATGAATGTTT	59.112	40.000	0.00	0.00	0.00	2.83
2233	2785	6.183360	GGGTCATCTAGTGGAATGAATGTTTG	60.183	42.308	0.00	0.00	0.00	2.93
2234	2786	6.261118	GTCATCTAGTGGAATGAATGTTTGC	58.739	40.000	0.00	0.00	0.00	3.68
2235	2787	4.944962	TCTAGTGGAATGAATGTTTGCG	57.055	40.909	0.00	0.00	0.00	4.85
2236	2788	3.689161	TCTAGTGGAATGAATGTTTGCGG	59.311	43.478	0.00	0.00	0.00	5.69
2237	2789	2.238521	AGTGGAATGAATGTTTGCGGT	58.761	42.857	0.00	0.00	0.00	5.68
2238	2790	2.030007	AGTGGAATGAATGTTTGCGGTG	60.030	45.455	0.00	0.00	0.00	4.94
2239	2791	1.271934	TGGAATGAATGTTTGCGGTGG	59.728	47.619	0.00	0.00	0.00	4.61
2240	2792	1.543802	GGAATGAATGTTTGCGGTGGA	59.456	47.619	0.00	0.00	0.00	4.02
2241	2793	2.029470	GGAATGAATGTTTGCGGTGGAA	60.029	45.455	0.00	0.00	0.00	3.53
2242	2794	2.723124	ATGAATGTTTGCGGTGGAAC	57.277	45.000	0.00	0.00	0.00	3.62
2259	2811	3.234349	CCAGACATGGGGAGCGAT	58.766	61.111	0.00	0.00	43.54	4.58
2260	2812	1.227764	CCAGACATGGGGAGCGATG	60.228	63.158	0.00	0.00	43.54	3.84
2261	2813	1.227764	CAGACATGGGGAGCGATGG	60.228	63.158	0.00	0.00	0.00	3.51
2262	2814	1.690633	AGACATGGGGAGCGATGGT	60.691	57.895	0.00	0.00	0.00	3.55
2263	2815	1.224592	GACATGGGGAGCGATGGTT	59.775	57.895	0.00	0.00	0.00	3.67
2264	2816	0.394352	GACATGGGGAGCGATGGTTT	60.394	55.000	0.00	0.00	0.00	3.27
2265	2817	0.680921	ACATGGGGAGCGATGGTTTG	60.681	55.000	0.00	0.00	0.00	2.93
2266	2818	0.394216	CATGGGGAGCGATGGTTTGA	60.394	55.000	0.00	0.00	0.00	2.69
2267	2819	0.107017	ATGGGGAGCGATGGTTTGAG	60.107	55.000	0.00	0.00	0.00	3.02
2268	2820	1.198094	TGGGGAGCGATGGTTTGAGA	61.198	55.000	0.00	0.00	0.00	3.27
2269	2821	0.181350	GGGGAGCGATGGTTTGAGAT	59.819	55.000	0.00	0.00	0.00	2.75
2270	2822	1.303309	GGGAGCGATGGTTTGAGATG	58.697	55.000	0.00	0.00	0.00	2.90
2271	2823	1.134401	GGGAGCGATGGTTTGAGATGA	60.134	52.381	0.00	0.00	0.00	2.92
2272	2824	2.632377	GGAGCGATGGTTTGAGATGAA	58.368	47.619	0.00	0.00	0.00	2.57
2273	2825	3.209410	GGAGCGATGGTTTGAGATGAAT	58.791	45.455	0.00	0.00	0.00	2.57
2274	2826	3.249559	GGAGCGATGGTTTGAGATGAATC	59.750	47.826	0.00	0.00	0.00	2.52
2275	2827	3.873361	GAGCGATGGTTTGAGATGAATCA	59.127	43.478	0.00	0.00	0.00	2.57
2276	2828	3.875727	AGCGATGGTTTGAGATGAATCAG	59.124	43.478	0.00	0.00	0.00	2.90
2277	2829	3.624861	GCGATGGTTTGAGATGAATCAGT	59.375	43.478	0.00	0.00	0.00	3.41
2278	2830	4.495349	GCGATGGTTTGAGATGAATCAGTG	60.495	45.833	0.00	0.00	0.00	3.66
2279	2831	4.872124	CGATGGTTTGAGATGAATCAGTGA	59.128	41.667	0.00	0.00	0.00	3.41
2280	2832	5.352293	CGATGGTTTGAGATGAATCAGTGAA	59.648	40.000	0.00	0.00	0.00	3.18
2281	2833	6.128200	CGATGGTTTGAGATGAATCAGTGAAA	60.128	38.462	0.00	0.00	0.00	2.69
2282	2834	6.564709	TGGTTTGAGATGAATCAGTGAAAG	57.435	37.500	0.00	0.00	0.00	2.62
2283	2835	6.298361	TGGTTTGAGATGAATCAGTGAAAGA	58.702	36.000	0.00	0.00	0.00	2.52
2284	2836	6.429078	TGGTTTGAGATGAATCAGTGAAAGAG	59.571	38.462	0.00	0.00	0.00	2.85
2285	2837	6.128063	GGTTTGAGATGAATCAGTGAAAGAGG	60.128	42.308	0.00	0.00	0.00	3.69
2286	2838	5.095145	TGAGATGAATCAGTGAAAGAGGG	57.905	43.478	0.00	0.00	0.00	4.30
2287	2839	4.080695	TGAGATGAATCAGTGAAAGAGGGG	60.081	45.833	0.00	0.00	0.00	4.79
2288	2840	2.496899	TGAATCAGTGAAAGAGGGGC	57.503	50.000	0.00	0.00	0.00	5.80
2289	2841	1.004745	TGAATCAGTGAAAGAGGGGCC	59.995	52.381	0.00	0.00	0.00	5.80
2290	2842	0.332972	AATCAGTGAAAGAGGGGCCC	59.667	55.000	17.12	17.12	0.00	5.80
2291	2843	1.915078	ATCAGTGAAAGAGGGGCCCG	61.915	60.000	18.95	0.00	0.00	6.13
2292	2844	2.529389	AGTGAAAGAGGGGCCCGT	60.529	61.111	19.16	19.16	0.00	5.28
2293	2845	2.154074	AGTGAAAGAGGGGCCCGTT	61.154	57.895	20.17	12.50	0.00	4.44
2294	2846	1.971695	GTGAAAGAGGGGCCCGTTG	60.972	63.158	20.17	0.00	0.00	4.10
2295	2847	2.434774	GAAAGAGGGGCCCGTTGT	59.565	61.111	20.17	6.44	0.00	3.32
2296	2848	1.674651	GAAAGAGGGGCCCGTTGTC	60.675	63.158	20.17	12.38	0.00	3.18
2297	2849	2.406002	GAAAGAGGGGCCCGTTGTCA	62.406	60.000	20.17	0.00	0.00	3.58
2298	2850	2.692273	AAAGAGGGGCCCGTTGTCAC	62.692	60.000	20.17	5.10	0.00	3.67
2299	2851	4.717313	GAGGGGCCCGTTGTCACC	62.717	72.222	20.17	0.00	0.00	4.02
2301	2853	3.324108	GGGGCCCGTTGTCACCTA	61.324	66.667	17.79	0.00	0.00	3.08
2302	2854	2.676265	GGGGCCCGTTGTCACCTAT	61.676	63.158	17.79	0.00	0.00	2.57
2303	2855	1.451387	GGGCCCGTTGTCACCTATG	60.451	63.158	5.69	0.00	0.00	2.23
2304	2856	1.451387	GGCCCGTTGTCACCTATGG	60.451	63.158	0.00	0.00	0.00	2.74
2305	2857	1.298667	GCCCGTTGTCACCTATGGT	59.701	57.895	0.00	0.00	35.62	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	7.812191	GTCATCACCATAGTCTAGCAGATTAAG	59.188	40.741	0.00	0.00	0.00	1.85
1108	1162	3.640407	TGGCTGGGAGGCAGTGAC	61.640	66.667	0.00	0.00	46.47	3.67
1234	1297	1.023513	GCGAGCTGCAGAAGAACCAT	61.024	55.000	20.43	0.00	45.45	3.55
1461	1543	3.004734	AGAGCCATTGTAGCACAACAAAC	59.995	43.478	4.23	0.00	41.40	2.93
1535	1620	7.070571	ACACAAAATCCTATTTGGTTTCTGGAA	59.929	33.333	4.96	0.00	43.10	3.53
1892	2164	3.119280	TGGCTGATGCAAAATGATCACTG	60.119	43.478	0.00	0.00	41.91	3.66
1948	2220	0.246086	GTCTCACTGCTGTCCCTGAG	59.754	60.000	0.00	0.00	0.00	3.35
1949	2221	0.469892	TGTCTCACTGCTGTCCCTGA	60.470	55.000	0.00	0.00	0.00	3.86
1951	2223	1.002888	CATTGTCTCACTGCTGTCCCT	59.997	52.381	0.00	0.00	0.00	4.20
1952	2224	1.446907	CATTGTCTCACTGCTGTCCC	58.553	55.000	0.00	0.00	0.00	4.46
2194	2746	4.652131	ACCCGGTTGCGCCAATGA	62.652	61.111	4.18	0.00	36.97	2.57
2221	2773	2.986479	GTTCCACCGCAAACATTCATTC	59.014	45.455	0.00	0.00	0.00	2.67
2222	2774	2.288763	GGTTCCACCGCAAACATTCATT	60.289	45.455	0.00	0.00	0.00	2.57
2223	2775	1.272212	GGTTCCACCGCAAACATTCAT	59.728	47.619	0.00	0.00	0.00	2.57
2224	2776	0.671251	GGTTCCACCGCAAACATTCA	59.329	50.000	0.00	0.00	0.00	2.57
2225	2777	0.671251	TGGTTCCACCGCAAACATTC	59.329	50.000	0.00	0.00	42.58	2.67
2226	2778	0.673437	CTGGTTCCACCGCAAACATT	59.327	50.000	0.00	0.00	42.58	2.71
2227	2779	0.179004	TCTGGTTCCACCGCAAACAT	60.179	50.000	0.00	0.00	42.58	2.71
2228	2780	1.098712	GTCTGGTTCCACCGCAAACA	61.099	55.000	0.00	0.00	42.58	2.83
2229	2781	1.098712	TGTCTGGTTCCACCGCAAAC	61.099	55.000	0.00	0.00	42.58	2.93
2230	2782	0.179004	ATGTCTGGTTCCACCGCAAA	60.179	50.000	0.00	0.00	42.58	3.68
2231	2783	0.888736	CATGTCTGGTTCCACCGCAA	60.889	55.000	0.00	0.00	42.58	4.85
2232	2784	1.302431	CATGTCTGGTTCCACCGCA	60.302	57.895	0.00	0.00	42.58	5.69
2233	2785	2.040544	CCATGTCTGGTTCCACCGC	61.041	63.158	0.00	0.00	42.58	5.68
2234	2786	1.377202	CCCATGTCTGGTTCCACCG	60.377	63.158	0.00	0.00	42.58	4.94
2235	2787	1.000896	CCCCATGTCTGGTTCCACC	60.001	63.158	0.00	0.00	41.37	4.61
2236	2788	0.035056	CTCCCCATGTCTGGTTCCAC	60.035	60.000	0.00	0.00	41.37	4.02
2237	2789	1.852157	GCTCCCCATGTCTGGTTCCA	61.852	60.000	0.00	0.00	41.37	3.53
2238	2790	1.077429	GCTCCCCATGTCTGGTTCC	60.077	63.158	0.00	0.00	41.37	3.62
2239	2791	1.450312	CGCTCCCCATGTCTGGTTC	60.450	63.158	0.00	0.00	41.37	3.62
2240	2792	1.274703	ATCGCTCCCCATGTCTGGTT	61.275	55.000	0.00	0.00	41.37	3.67
2241	2793	1.690633	ATCGCTCCCCATGTCTGGT	60.691	57.895	0.00	0.00	41.37	4.00
2242	2794	1.227764	CATCGCTCCCCATGTCTGG	60.228	63.158	0.00	0.00	42.73	3.86
2243	2795	1.227764	CCATCGCTCCCCATGTCTG	60.228	63.158	0.00	0.00	0.00	3.51
2244	2796	1.274703	AACCATCGCTCCCCATGTCT	61.275	55.000	0.00	0.00	0.00	3.41
2245	2797	0.394352	AAACCATCGCTCCCCATGTC	60.394	55.000	0.00	0.00	0.00	3.06
2246	2798	0.680921	CAAACCATCGCTCCCCATGT	60.681	55.000	0.00	0.00	0.00	3.21
2247	2799	0.394216	TCAAACCATCGCTCCCCATG	60.394	55.000	0.00	0.00	0.00	3.66
2248	2800	0.107017	CTCAAACCATCGCTCCCCAT	60.107	55.000	0.00	0.00	0.00	4.00
2249	2801	1.198094	TCTCAAACCATCGCTCCCCA	61.198	55.000	0.00	0.00	0.00	4.96
2250	2802	0.181350	ATCTCAAACCATCGCTCCCC	59.819	55.000	0.00	0.00	0.00	4.81
2251	2803	1.134401	TCATCTCAAACCATCGCTCCC	60.134	52.381	0.00	0.00	0.00	4.30
2252	2804	2.315925	TCATCTCAAACCATCGCTCC	57.684	50.000	0.00	0.00	0.00	4.70
2253	2805	3.873361	TGATTCATCTCAAACCATCGCTC	59.127	43.478	0.00	0.00	0.00	5.03
2254	2806	3.875727	CTGATTCATCTCAAACCATCGCT	59.124	43.478	0.00	0.00	0.00	4.93
2255	2807	3.624861	ACTGATTCATCTCAAACCATCGC	59.375	43.478	0.00	0.00	0.00	4.58
2256	2808	4.872124	TCACTGATTCATCTCAAACCATCG	59.128	41.667	0.00	0.00	0.00	3.84
2257	2809	6.748333	TTCACTGATTCATCTCAAACCATC	57.252	37.500	0.00	0.00	0.00	3.51
2258	2810	6.944290	TCTTTCACTGATTCATCTCAAACCAT	59.056	34.615	0.00	0.00	0.00	3.55
2259	2811	6.298361	TCTTTCACTGATTCATCTCAAACCA	58.702	36.000	0.00	0.00	0.00	3.67
2260	2812	6.128063	CCTCTTTCACTGATTCATCTCAAACC	60.128	42.308	0.00	0.00	0.00	3.27
2261	2813	6.128063	CCCTCTTTCACTGATTCATCTCAAAC	60.128	42.308	0.00	0.00	0.00	2.93
2262	2814	5.942236	CCCTCTTTCACTGATTCATCTCAAA	59.058	40.000	0.00	0.00	0.00	2.69
2263	2815	5.494724	CCCTCTTTCACTGATTCATCTCAA	58.505	41.667	0.00	0.00	0.00	3.02
2264	2816	4.080695	CCCCTCTTTCACTGATTCATCTCA	60.081	45.833	0.00	0.00	0.00	3.27
2265	2817	4.450053	CCCCTCTTTCACTGATTCATCTC	58.550	47.826	0.00	0.00	0.00	2.75
2266	2818	3.371380	GCCCCTCTTTCACTGATTCATCT	60.371	47.826	0.00	0.00	0.00	2.90
2267	2819	2.948315	GCCCCTCTTTCACTGATTCATC	59.052	50.000	0.00	0.00	0.00	2.92
2268	2820	2.357569	GGCCCCTCTTTCACTGATTCAT	60.358	50.000	0.00	0.00	0.00	2.57
2269	2821	1.004745	GGCCCCTCTTTCACTGATTCA	59.995	52.381	0.00	0.00	0.00	2.57
2270	2822	1.683319	GGGCCCCTCTTTCACTGATTC	60.683	57.143	12.23	0.00	0.00	2.52
2271	2823	0.332972	GGGCCCCTCTTTCACTGATT	59.667	55.000	12.23	0.00	0.00	2.57
2272	2824	1.915078	CGGGCCCCTCTTTCACTGAT	61.915	60.000	18.66	0.00	0.00	2.90
2273	2825	2.592993	CGGGCCCCTCTTTCACTGA	61.593	63.158	18.66	0.00	0.00	3.41
2274	2826	2.045926	CGGGCCCCTCTTTCACTG	60.046	66.667	18.66	0.00	0.00	3.66
2275	2827	2.154074	AACGGGCCCCTCTTTCACT	61.154	57.895	18.66	0.00	0.00	3.41
2276	2828	1.971695	CAACGGGCCCCTCTTTCAC	60.972	63.158	18.66	0.00	0.00	3.18
2277	2829	2.406002	GACAACGGGCCCCTCTTTCA	62.406	60.000	18.66	0.00	0.00	2.69
2278	2830	1.674651	GACAACGGGCCCCTCTTTC	60.675	63.158	18.66	2.39	0.00	2.62
2279	2831	2.434774	GACAACGGGCCCCTCTTT	59.565	61.111	18.66	0.78	0.00	2.52
2280	2832	2.852075	TGACAACGGGCCCCTCTT	60.852	61.111	18.66	1.50	0.00	2.85
2281	2833	3.637273	GTGACAACGGGCCCCTCT	61.637	66.667	18.66	0.00	0.00	3.69
2282	2834	4.717313	GGTGACAACGGGCCCCTC	62.717	72.222	18.66	6.32	0.00	4.30
2283	2835	3.857521	TAGGTGACAACGGGCCCCT	62.858	63.158	18.66	7.23	0.00	4.79
2284	2836	2.676265	ATAGGTGACAACGGGCCCC	61.676	63.158	18.66	1.13	0.00	5.80
2285	2837	1.451387	CATAGGTGACAACGGGCCC	60.451	63.158	13.57	13.57	0.00	5.80
2286	2838	1.451387	CCATAGGTGACAACGGGCC	60.451	63.158	0.00	0.00	0.00	5.80
2287	2839	1.298667	ACCATAGGTGACAACGGGC	59.701	57.895	0.00	0.00	32.98	6.13

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.