Multiple sequence alignment - TraesCS5B01G558500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G558500 chr5B 100.000 2531 0 0 1 2531 705828527 705825997 0 4674
1 TraesCS5B01G558500 chr5B 99.442 1971 11 0 561 2531 705811761 705813731 0 3579
2 TraesCS5B01G558500 chr3B 99.391 1969 12 0 563 2531 755291154 755293122 0 3570
3 TraesCS5B01G558500 chr1B 99.391 1969 12 0 563 2531 637367014 637365046 0 3570
4 TraesCS5B01G558500 chr7A 99.340 1969 13 0 563 2531 18280882 18278914 0 3565
5 TraesCS5B01G558500 chr7A 99.290 1972 13 1 560 2531 689379798 689381768 0 3563
6 TraesCS5B01G558500 chr7A 98.986 1973 20 0 559 2531 40032040 40034012 0 3533
7 TraesCS5B01G558500 chr7B 99.188 1970 15 1 563 2531 697603941 697601972 0 3548
8 TraesCS5B01G558500 chr4B 99.138 1973 15 1 561 2531 437234397 437236369 0 3548
9 TraesCS5B01G558500 chr3A 98.890 1982 16 4 551 2531 658743982 658742006 0 3533


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G558500 chr5B 705825997 705828527 2530 True 4674 4674 100.000 1 2531 1 chr5B.!!$R1 2530
1 TraesCS5B01G558500 chr5B 705811761 705813731 1970 False 3579 3579 99.442 561 2531 1 chr5B.!!$F1 1970
2 TraesCS5B01G558500 chr3B 755291154 755293122 1968 False 3570 3570 99.391 563 2531 1 chr3B.!!$F1 1968
3 TraesCS5B01G558500 chr1B 637365046 637367014 1968 True 3570 3570 99.391 563 2531 1 chr1B.!!$R1 1968
4 TraesCS5B01G558500 chr7A 18278914 18280882 1968 True 3565 3565 99.340 563 2531 1 chr7A.!!$R1 1968
5 TraesCS5B01G558500 chr7A 689379798 689381768 1970 False 3563 3563 99.290 560 2531 1 chr7A.!!$F2 1971
6 TraesCS5B01G558500 chr7A 40032040 40034012 1972 False 3533 3533 98.986 559 2531 1 chr7A.!!$F1 1972
7 TraesCS5B01G558500 chr7B 697601972 697603941 1969 True 3548 3548 99.188 563 2531 1 chr7B.!!$R1 1968
8 TraesCS5B01G558500 chr4B 437234397 437236369 1972 False 3548 3548 99.138 561 2531 1 chr4B.!!$F1 1970
9 TraesCS5B01G558500 chr3A 658742006 658743982 1976 True 3533 3533 98.890 551 2531 1 chr3A.!!$R1 1980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.038021 TGTTTGCAGCATGGGAGCTA 59.962 50.0 0.0 0.0 44.54 3.32 F
80 81 0.038159 ACAAGTTCTTCTCCTCGCCG 60.038 55.0 0.0 0.0 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1093 1094 5.071788 TGGTCAAGAACACAGATCTAACCTT 59.928 40.00 0.0 0.0 0.0 3.50 R
1723 1724 5.818678 ACTGAATTTGGGTGTGTACTCTA 57.181 39.13 0.0 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.342179 GAGGAAAGAAGAGCGACAAGG 58.658 52.381 0.00 0.00 0.00 3.61
21 22 1.694696 AGGAAAGAAGAGCGACAAGGT 59.305 47.619 0.00 0.00 0.00 3.50
30 31 3.896648 GAGCGACAAGGTCAAATTTGA 57.103 42.857 16.91 16.91 46.08 2.69
42 43 4.120792 TCAAATTTGACTGTTTGCAGCA 57.879 36.364 16.91 0.00 46.30 4.41
43 44 4.695396 TCAAATTTGACTGTTTGCAGCAT 58.305 34.783 16.91 0.00 46.30 3.79
44 45 4.508492 TCAAATTTGACTGTTTGCAGCATG 59.492 37.500 16.91 0.00 46.30 4.06
45 46 2.512485 TTTGACTGTTTGCAGCATGG 57.488 45.000 0.00 0.00 46.30 3.66
46 47 0.675083 TTGACTGTTTGCAGCATGGG 59.325 50.000 0.00 0.00 46.30 4.00
47 48 0.178995 TGACTGTTTGCAGCATGGGA 60.179 50.000 0.00 0.00 46.30 4.37
48 49 0.524862 GACTGTTTGCAGCATGGGAG 59.475 55.000 0.00 0.00 46.30 4.30
49 50 1.214589 CTGTTTGCAGCATGGGAGC 59.785 57.895 0.00 0.00 35.77 4.70
50 51 3.891196 ACTGTTTGCAGCATGGGAGCT 62.891 52.381 0.00 0.00 46.30 4.09
51 52 0.038021 TGTTTGCAGCATGGGAGCTA 59.962 50.000 0.00 0.00 44.54 3.32
52 53 0.737219 GTTTGCAGCATGGGAGCTAG 59.263 55.000 0.00 0.00 44.54 3.42
53 54 0.394762 TTTGCAGCATGGGAGCTAGG 60.395 55.000 0.00 0.00 44.54 3.02
54 55 2.112718 GCAGCATGGGAGCTAGGG 59.887 66.667 0.00 0.00 44.54 3.53
55 56 2.750657 GCAGCATGGGAGCTAGGGT 61.751 63.158 0.00 0.00 44.54 4.34
56 57 1.918253 CAGCATGGGAGCTAGGGTT 59.082 57.895 0.00 0.00 44.54 4.11
57 58 0.257039 CAGCATGGGAGCTAGGGTTT 59.743 55.000 0.00 0.00 44.54 3.27
58 59 0.548510 AGCATGGGAGCTAGGGTTTC 59.451 55.000 0.00 0.00 44.50 2.78
59 60 0.548510 GCATGGGAGCTAGGGTTTCT 59.451 55.000 0.00 0.00 0.00 2.52
60 61 1.475930 GCATGGGAGCTAGGGTTTCTC 60.476 57.143 0.00 0.00 0.00 2.87
61 62 1.839994 CATGGGAGCTAGGGTTTCTCA 59.160 52.381 0.00 0.00 0.00 3.27
62 63 1.276622 TGGGAGCTAGGGTTTCTCAC 58.723 55.000 0.00 0.00 0.00 3.51
63 64 1.276622 GGGAGCTAGGGTTTCTCACA 58.723 55.000 0.00 0.00 30.91 3.58
64 65 1.628846 GGGAGCTAGGGTTTCTCACAA 59.371 52.381 0.00 0.00 30.91 3.33
65 66 2.355209 GGGAGCTAGGGTTTCTCACAAG 60.355 54.545 0.00 0.00 30.91 3.16
66 67 2.303311 GGAGCTAGGGTTTCTCACAAGT 59.697 50.000 0.00 0.00 0.00 3.16
67 68 3.244596 GGAGCTAGGGTTTCTCACAAGTT 60.245 47.826 0.00 0.00 0.00 2.66
68 69 3.997681 GAGCTAGGGTTTCTCACAAGTTC 59.002 47.826 0.00 0.00 0.00 3.01
69 70 3.648545 AGCTAGGGTTTCTCACAAGTTCT 59.351 43.478 0.00 0.00 0.00 3.01
70 71 4.103311 AGCTAGGGTTTCTCACAAGTTCTT 59.897 41.667 0.00 0.00 0.00 2.52
71 72 4.452795 GCTAGGGTTTCTCACAAGTTCTTC 59.547 45.833 0.00 0.00 0.00 2.87
72 73 4.779993 AGGGTTTCTCACAAGTTCTTCT 57.220 40.909 0.00 0.00 0.00 2.85
73 74 4.709250 AGGGTTTCTCACAAGTTCTTCTC 58.291 43.478 0.00 0.00 0.00 2.87
74 75 3.815962 GGGTTTCTCACAAGTTCTTCTCC 59.184 47.826 0.00 0.00 0.00 3.71
75 76 4.445019 GGGTTTCTCACAAGTTCTTCTCCT 60.445 45.833 0.00 0.00 0.00 3.69
76 77 4.752604 GGTTTCTCACAAGTTCTTCTCCTC 59.247 45.833 0.00 0.00 0.00 3.71
77 78 3.924918 TCTCACAAGTTCTTCTCCTCG 57.075 47.619 0.00 0.00 0.00 4.63
78 79 2.029828 TCTCACAAGTTCTTCTCCTCGC 60.030 50.000 0.00 0.00 0.00 5.03
79 80 1.000955 TCACAAGTTCTTCTCCTCGCC 59.999 52.381 0.00 0.00 0.00 5.54
80 81 0.038159 ACAAGTTCTTCTCCTCGCCG 60.038 55.000 0.00 0.00 0.00 6.46
81 82 1.079750 AAGTTCTTCTCCTCGCCGC 60.080 57.895 0.00 0.00 0.00 6.53
82 83 2.508586 AAGTTCTTCTCCTCGCCGCC 62.509 60.000 0.00 0.00 0.00 6.13
83 84 4.129737 TTCTTCTCCTCGCCGCCG 62.130 66.667 0.00 0.00 0.00 6.46
95 96 4.812476 CCGCCGCCGATTCTGTGA 62.812 66.667 0.00 0.00 36.29 3.58
96 97 3.257561 CGCCGCCGATTCTGTGAG 61.258 66.667 0.00 0.00 36.29 3.51
97 98 2.892425 GCCGCCGATTCTGTGAGG 60.892 66.667 0.00 0.00 0.00 3.86
98 99 2.892640 CCGCCGATTCTGTGAGGA 59.107 61.111 0.00 0.00 0.00 3.71
99 100 1.218047 CCGCCGATTCTGTGAGGAA 59.782 57.895 0.00 0.00 0.00 3.36
100 101 0.179073 CCGCCGATTCTGTGAGGAAT 60.179 55.000 0.00 0.00 38.47 3.01
101 102 1.068588 CCGCCGATTCTGTGAGGAATA 59.931 52.381 0.00 0.00 36.24 1.75
102 103 2.483013 CCGCCGATTCTGTGAGGAATAA 60.483 50.000 0.00 0.00 36.24 1.40
103 104 2.797156 CGCCGATTCTGTGAGGAATAAG 59.203 50.000 0.00 0.00 36.24 1.73
104 105 2.545946 GCCGATTCTGTGAGGAATAAGC 59.454 50.000 0.00 0.00 36.24 3.09
105 106 3.797039 CCGATTCTGTGAGGAATAAGCA 58.203 45.455 0.00 0.00 36.24 3.91
106 107 3.557595 CCGATTCTGTGAGGAATAAGCAC 59.442 47.826 0.00 0.00 36.24 4.40
107 108 4.437239 CGATTCTGTGAGGAATAAGCACT 58.563 43.478 0.00 0.00 36.24 4.40
108 109 5.451937 CCGATTCTGTGAGGAATAAGCACTA 60.452 44.000 0.00 0.00 36.24 2.74
109 110 6.219473 CGATTCTGTGAGGAATAAGCACTAT 58.781 40.000 0.00 0.00 36.24 2.12
110 111 6.703607 CGATTCTGTGAGGAATAAGCACTATT 59.296 38.462 0.00 0.00 36.24 1.73
111 112 7.095857 CGATTCTGTGAGGAATAAGCACTATTC 60.096 40.741 9.13 9.13 43.65 1.75
119 120 4.621991 GAATAAGCACTATTCCTCTCGCA 58.378 43.478 7.14 0.00 40.02 5.10
120 121 4.881019 ATAAGCACTATTCCTCTCGCAT 57.119 40.909 0.00 0.00 0.00 4.73
121 122 5.984695 ATAAGCACTATTCCTCTCGCATA 57.015 39.130 0.00 0.00 0.00 3.14
122 123 3.932545 AGCACTATTCCTCTCGCATAG 57.067 47.619 0.00 0.00 0.00 2.23
123 124 2.029470 AGCACTATTCCTCTCGCATAGC 60.029 50.000 0.00 0.00 0.00 2.97
143 144 4.200283 CGACAGCGCCCTCCTCTC 62.200 72.222 2.29 0.00 0.00 3.20
144 145 3.071206 GACAGCGCCCTCCTCTCA 61.071 66.667 2.29 0.00 0.00 3.27
145 146 2.364842 ACAGCGCCCTCCTCTCAT 60.365 61.111 2.29 0.00 0.00 2.90
146 147 2.362329 GACAGCGCCCTCCTCTCATC 62.362 65.000 2.29 0.00 0.00 2.92
147 148 2.841988 AGCGCCCTCCTCTCATCC 60.842 66.667 2.29 0.00 0.00 3.51
148 149 3.934962 GCGCCCTCCTCTCATCCC 61.935 72.222 0.00 0.00 0.00 3.85
149 150 3.237741 CGCCCTCCTCTCATCCCC 61.238 72.222 0.00 0.00 0.00 4.81
150 151 2.288643 GCCCTCCTCTCATCCCCT 59.711 66.667 0.00 0.00 0.00 4.79
151 152 1.841103 GCCCTCCTCTCATCCCCTC 60.841 68.421 0.00 0.00 0.00 4.30
152 153 1.532794 CCCTCCTCTCATCCCCTCG 60.533 68.421 0.00 0.00 0.00 4.63
153 154 2.206536 CCTCCTCTCATCCCCTCGC 61.207 68.421 0.00 0.00 0.00 5.03
154 155 1.456518 CTCCTCTCATCCCCTCGCA 60.457 63.158 0.00 0.00 0.00 5.10
155 156 1.001631 TCCTCTCATCCCCTCGCAA 59.998 57.895 0.00 0.00 0.00 4.85
156 157 1.144936 CCTCTCATCCCCTCGCAAC 59.855 63.158 0.00 0.00 0.00 4.17
157 158 1.227089 CTCTCATCCCCTCGCAACG 60.227 63.158 0.00 0.00 0.00 4.10
158 159 1.667154 CTCTCATCCCCTCGCAACGA 61.667 60.000 0.00 0.00 0.00 3.85
159 160 1.218047 CTCATCCCCTCGCAACGAA 59.782 57.895 0.00 0.00 34.74 3.85
160 161 0.391130 CTCATCCCCTCGCAACGAAA 60.391 55.000 0.00 0.00 34.74 3.46
161 162 0.251916 TCATCCCCTCGCAACGAAAT 59.748 50.000 0.00 0.00 34.74 2.17
162 163 0.657840 CATCCCCTCGCAACGAAATC 59.342 55.000 0.00 0.00 34.74 2.17
163 164 0.463833 ATCCCCTCGCAACGAAATCC 60.464 55.000 0.00 0.00 34.74 3.01
164 165 1.078426 CCCCTCGCAACGAAATCCT 60.078 57.895 0.00 0.00 34.74 3.24
165 166 0.177141 CCCCTCGCAACGAAATCCTA 59.823 55.000 0.00 0.00 34.74 2.94
166 167 1.406341 CCCCTCGCAACGAAATCCTAA 60.406 52.381 0.00 0.00 34.74 2.69
167 168 2.352388 CCCTCGCAACGAAATCCTAAA 58.648 47.619 0.00 0.00 34.74 1.85
168 169 2.745281 CCCTCGCAACGAAATCCTAAAA 59.255 45.455 0.00 0.00 34.74 1.52
169 170 3.425758 CCCTCGCAACGAAATCCTAAAAC 60.426 47.826 0.00 0.00 34.74 2.43
170 171 3.425758 CCTCGCAACGAAATCCTAAAACC 60.426 47.826 0.00 0.00 34.74 3.27
171 172 2.158058 TCGCAACGAAATCCTAAAACCG 59.842 45.455 0.00 0.00 31.06 4.44
172 173 2.096119 CGCAACGAAATCCTAAAACCGT 60.096 45.455 0.00 0.00 0.00 4.83
173 174 3.231160 GCAACGAAATCCTAAAACCGTG 58.769 45.455 0.00 0.00 0.00 4.94
174 175 3.817238 CAACGAAATCCTAAAACCGTGG 58.183 45.455 0.00 0.00 0.00 4.94
175 176 1.808343 ACGAAATCCTAAAACCGTGGC 59.192 47.619 0.00 0.00 0.00 5.01
176 177 1.201987 CGAAATCCTAAAACCGTGGCG 60.202 52.381 0.00 0.00 0.00 5.69
177 178 2.078392 GAAATCCTAAAACCGTGGCGA 58.922 47.619 0.00 0.00 0.00 5.54
178 179 1.734163 AATCCTAAAACCGTGGCGAG 58.266 50.000 0.00 0.00 0.00 5.03
179 180 0.743345 ATCCTAAAACCGTGGCGAGC 60.743 55.000 0.00 0.00 0.00 5.03
180 181 1.669760 CCTAAAACCGTGGCGAGCA 60.670 57.895 0.00 0.00 0.00 4.26
181 182 1.231958 CCTAAAACCGTGGCGAGCAA 61.232 55.000 0.00 0.00 0.00 3.91
182 183 0.110373 CTAAAACCGTGGCGAGCAAC 60.110 55.000 0.00 0.00 0.00 4.17
183 184 1.833434 TAAAACCGTGGCGAGCAACG 61.833 55.000 17.24 17.24 42.54 4.10
184 185 4.903010 AACCGTGGCGAGCAACGT 62.903 61.111 21.50 8.82 41.42 3.99
187 188 3.767230 CGTGGCGAGCAACGTGAG 61.767 66.667 16.10 0.00 44.60 3.51
188 189 2.355837 GTGGCGAGCAACGTGAGA 60.356 61.111 0.00 0.00 44.60 3.27
189 190 2.049156 TGGCGAGCAACGTGAGAG 60.049 61.111 0.00 0.00 44.60 3.20
190 191 2.258591 GGCGAGCAACGTGAGAGA 59.741 61.111 0.00 0.00 44.60 3.10
191 192 1.153745 GGCGAGCAACGTGAGAGAT 60.154 57.895 0.00 0.00 44.60 2.75
192 193 1.416813 GGCGAGCAACGTGAGAGATG 61.417 60.000 0.00 0.00 44.60 2.90
193 194 1.416813 GCGAGCAACGTGAGAGATGG 61.417 60.000 0.00 0.00 44.60 3.51
194 195 0.803768 CGAGCAACGTGAGAGATGGG 60.804 60.000 0.00 0.00 37.22 4.00
195 196 0.247736 GAGCAACGTGAGAGATGGGT 59.752 55.000 0.00 0.00 0.00 4.51
196 197 0.247736 AGCAACGTGAGAGATGGGTC 59.752 55.000 0.00 0.00 0.00 4.46
197 198 0.741221 GCAACGTGAGAGATGGGTCC 60.741 60.000 0.00 0.00 0.00 4.46
198 199 0.608130 CAACGTGAGAGATGGGTCCA 59.392 55.000 0.00 0.00 0.00 4.02
199 200 0.898320 AACGTGAGAGATGGGTCCAG 59.102 55.000 0.00 0.00 0.00 3.86
200 201 0.251832 ACGTGAGAGATGGGTCCAGT 60.252 55.000 0.00 0.00 0.00 4.00
201 202 0.174389 CGTGAGAGATGGGTCCAGTG 59.826 60.000 0.00 0.00 0.00 3.66
202 203 1.270907 GTGAGAGATGGGTCCAGTGT 58.729 55.000 0.00 0.00 0.00 3.55
203 204 1.066573 GTGAGAGATGGGTCCAGTGTG 60.067 57.143 0.00 0.00 0.00 3.82
204 205 0.107945 GAGAGATGGGTCCAGTGTGC 60.108 60.000 0.00 0.00 0.00 4.57
205 206 1.078143 GAGATGGGTCCAGTGTGCC 60.078 63.158 0.00 0.00 0.00 5.01
206 207 1.841302 GAGATGGGTCCAGTGTGCCA 61.841 60.000 0.00 0.00 0.00 4.92
207 208 1.675641 GATGGGTCCAGTGTGCCAC 60.676 63.158 0.00 0.00 34.10 5.01
208 209 3.551496 ATGGGTCCAGTGTGCCACG 62.551 63.158 0.00 0.00 39.64 4.94
210 211 3.936203 GGTCCAGTGTGCCACGGA 61.936 66.667 6.96 9.63 39.64 4.69
211 212 2.357517 GTCCAGTGTGCCACGGAG 60.358 66.667 14.29 4.78 39.64 4.63
212 213 2.523168 TCCAGTGTGCCACGGAGA 60.523 61.111 6.96 0.81 39.64 3.71
213 214 1.913262 TCCAGTGTGCCACGGAGAT 60.913 57.895 6.96 0.00 39.64 2.75
214 215 1.742880 CCAGTGTGCCACGGAGATG 60.743 63.158 6.96 0.00 39.64 2.90
215 216 1.293179 CAGTGTGCCACGGAGATGA 59.707 57.895 0.00 0.00 39.64 2.92
216 217 0.738762 CAGTGTGCCACGGAGATGAG 60.739 60.000 0.00 0.00 39.64 2.90
217 218 2.103042 GTGTGCCACGGAGATGAGC 61.103 63.158 0.00 0.00 0.00 4.26
218 219 2.512515 GTGCCACGGAGATGAGCC 60.513 66.667 0.00 0.00 0.00 4.70
219 220 3.785859 TGCCACGGAGATGAGCCC 61.786 66.667 0.00 0.00 0.00 5.19
224 225 4.899239 CGGAGATGAGCCCGGCAC 62.899 72.222 13.15 5.95 41.89 5.01
225 226 3.474570 GGAGATGAGCCCGGCACT 61.475 66.667 13.15 5.19 0.00 4.40
226 227 2.134287 GGAGATGAGCCCGGCACTA 61.134 63.158 13.15 0.00 0.00 2.74
227 228 1.068250 GAGATGAGCCCGGCACTAC 59.932 63.158 13.15 4.12 0.00 2.73
228 229 1.676678 GAGATGAGCCCGGCACTACA 61.677 60.000 13.15 6.63 0.00 2.74
229 230 1.227380 GATGAGCCCGGCACTACAG 60.227 63.158 13.15 0.00 0.00 2.74
230 231 3.391665 ATGAGCCCGGCACTACAGC 62.392 63.158 13.15 0.00 0.00 4.40
238 239 2.429930 GCACTACAGCCCACCACA 59.570 61.111 0.00 0.00 0.00 4.17
239 240 1.672356 GCACTACAGCCCACCACAG 60.672 63.158 0.00 0.00 0.00 3.66
240 241 1.003355 CACTACAGCCCACCACAGG 60.003 63.158 0.00 0.00 0.00 4.00
252 253 2.282674 CACAGGGTGGTGCATGCT 60.283 61.111 20.33 0.00 31.10 3.79
253 254 2.282674 ACAGGGTGGTGCATGCTG 60.283 61.111 20.33 9.29 0.00 4.41
254 255 3.755628 CAGGGTGGTGCATGCTGC 61.756 66.667 20.33 11.59 45.29 5.25
270 271 3.020627 GCGCATGCATGTCCTCTC 58.979 61.111 26.79 8.94 42.15 3.20
271 272 2.879070 GCGCATGCATGTCCTCTCG 61.879 63.158 26.79 20.39 42.15 4.04
272 273 2.242572 CGCATGCATGTCCTCTCGG 61.243 63.158 26.79 0.00 0.00 4.63
273 274 1.144716 GCATGCATGTCCTCTCGGA 59.855 57.895 26.79 0.00 36.83 4.55
274 275 0.462581 GCATGCATGTCCTCTCGGAA 60.463 55.000 26.79 0.00 42.08 4.30
275 276 1.293924 CATGCATGTCCTCTCGGAAC 58.706 55.000 18.91 0.00 42.08 3.62
276 277 0.179000 ATGCATGTCCTCTCGGAACC 59.821 55.000 0.00 0.00 42.08 3.62
277 278 0.904865 TGCATGTCCTCTCGGAACCT 60.905 55.000 0.00 0.00 42.08 3.50
278 279 0.460987 GCATGTCCTCTCGGAACCTG 60.461 60.000 0.00 0.00 42.08 4.00
279 280 0.898320 CATGTCCTCTCGGAACCTGT 59.102 55.000 0.00 0.00 42.08 4.00
280 281 2.100197 CATGTCCTCTCGGAACCTGTA 58.900 52.381 0.00 0.00 42.08 2.74
281 282 1.542492 TGTCCTCTCGGAACCTGTAC 58.458 55.000 0.00 0.00 42.08 2.90
282 283 0.816373 GTCCTCTCGGAACCTGTACC 59.184 60.000 0.00 0.00 42.08 3.34
298 299 2.987125 CCGGTTCCGGTTGAGGAT 59.013 61.111 20.65 0.00 43.86 3.24
299 300 1.153429 CCGGTTCCGGTTGAGGATC 60.153 63.158 20.65 0.00 43.86 3.36
300 301 1.895020 CCGGTTCCGGTTGAGGATCA 61.895 60.000 20.65 0.00 43.44 2.92
301 302 3.186554 CCGGTTCCGGTTGAGGATCAT 62.187 57.143 20.65 0.00 42.51 2.45
312 313 3.912496 TGAGGATCATGTCGGTGAAAT 57.088 42.857 0.00 0.00 42.56 2.17
314 315 4.693283 TGAGGATCATGTCGGTGAAATAC 58.307 43.478 0.00 0.00 42.56 1.89
315 316 4.161377 TGAGGATCATGTCGGTGAAATACA 59.839 41.667 0.00 0.00 42.56 2.29
316 317 4.697514 AGGATCATGTCGGTGAAATACAG 58.302 43.478 0.00 0.00 0.00 2.74
317 318 3.248602 GGATCATGTCGGTGAAATACAGC 59.751 47.826 0.00 0.00 42.73 4.40
325 326 1.064060 GGTGAAATACAGCGTCATGGC 59.936 52.381 0.00 0.00 37.26 4.40
326 327 1.006086 TGAAATACAGCGTCATGGCG 58.994 50.000 16.99 16.99 38.18 5.69
327 328 1.286501 GAAATACAGCGTCATGGCGA 58.713 50.000 26.38 1.70 38.18 5.54
328 329 1.663643 GAAATACAGCGTCATGGCGAA 59.336 47.619 26.38 5.35 38.18 4.70
329 330 1.290203 AATACAGCGTCATGGCGAAG 58.710 50.000 26.38 16.93 38.18 3.79
330 331 0.459899 ATACAGCGTCATGGCGAAGA 59.540 50.000 26.38 5.10 38.18 2.87
331 332 0.179137 TACAGCGTCATGGCGAAGAG 60.179 55.000 26.38 11.57 38.18 2.85
332 333 2.169789 CAGCGTCATGGCGAAGAGG 61.170 63.158 26.38 2.87 38.18 3.69
333 334 3.567797 GCGTCATGGCGAAGAGGC 61.568 66.667 26.38 0.00 46.95 4.70
334 335 2.185350 CGTCATGGCGAAGAGGCT 59.815 61.111 16.21 0.00 46.88 4.58
335 336 2.169789 CGTCATGGCGAAGAGGCTG 61.170 63.158 16.21 0.00 46.88 4.85
336 337 2.124983 TCATGGCGAAGAGGCTGC 60.125 61.111 0.00 0.00 46.88 5.25
337 338 2.437180 CATGGCGAAGAGGCTGCA 60.437 61.111 0.50 0.00 46.88 4.41
338 339 2.124819 ATGGCGAAGAGGCTGCAG 60.125 61.111 10.11 10.11 46.88 4.41
339 340 2.964310 ATGGCGAAGAGGCTGCAGT 61.964 57.895 16.64 0.00 46.88 4.40
340 341 2.359230 GGCGAAGAGGCTGCAGTT 60.359 61.111 16.64 3.84 42.90 3.16
341 342 2.684843 GGCGAAGAGGCTGCAGTTG 61.685 63.158 16.64 0.00 42.90 3.16
342 343 2.684843 GCGAAGAGGCTGCAGTTGG 61.685 63.158 16.64 4.02 0.00 3.77
343 344 2.684843 CGAAGAGGCTGCAGTTGGC 61.685 63.158 16.64 2.22 45.13 4.52
352 353 2.125512 GCAGTTGGCGACGAGGAT 60.126 61.111 0.00 0.00 0.00 3.24
353 354 2.456119 GCAGTTGGCGACGAGGATG 61.456 63.158 0.00 0.00 0.00 3.51
354 355 1.079819 CAGTTGGCGACGAGGATGT 60.080 57.895 0.00 0.00 0.00 3.06
355 356 1.078759 CAGTTGGCGACGAGGATGTC 61.079 60.000 0.00 0.00 35.49 3.06
356 357 1.810030 GTTGGCGACGAGGATGTCC 60.810 63.158 0.00 0.00 35.40 4.02
384 385 4.338379 GACACCTTGTCACCTTAGTCTT 57.662 45.455 1.34 0.00 46.22 3.01
385 386 4.058817 GACACCTTGTCACCTTAGTCTTG 58.941 47.826 1.34 0.00 46.22 3.02
386 387 3.181454 ACACCTTGTCACCTTAGTCTTGG 60.181 47.826 0.00 0.00 0.00 3.61
387 388 2.224548 ACCTTGTCACCTTAGTCTTGGC 60.225 50.000 0.00 0.00 0.00 4.52
388 389 2.039084 CCTTGTCACCTTAGTCTTGGCT 59.961 50.000 0.00 0.00 0.00 4.75
389 390 3.496870 CCTTGTCACCTTAGTCTTGGCTT 60.497 47.826 0.00 0.00 0.00 4.35
390 391 3.126001 TGTCACCTTAGTCTTGGCTTG 57.874 47.619 0.00 0.00 0.00 4.01
391 392 2.224523 TGTCACCTTAGTCTTGGCTTGG 60.225 50.000 0.00 0.00 0.00 3.61
392 393 2.054799 TCACCTTAGTCTTGGCTTGGT 58.945 47.619 0.00 0.00 0.00 3.67
393 394 2.441750 TCACCTTAGTCTTGGCTTGGTT 59.558 45.455 0.00 0.00 0.00 3.67
394 395 3.649023 TCACCTTAGTCTTGGCTTGGTTA 59.351 43.478 0.00 0.00 0.00 2.85
395 396 4.003648 CACCTTAGTCTTGGCTTGGTTAG 58.996 47.826 0.00 0.00 0.00 2.34
406 407 2.163818 CTTGGTTAGCAGGTTGTCGA 57.836 50.000 0.00 0.00 0.00 4.20
407 408 2.699954 CTTGGTTAGCAGGTTGTCGAT 58.300 47.619 0.00 0.00 0.00 3.59
408 409 2.093306 TGGTTAGCAGGTTGTCGATG 57.907 50.000 0.00 0.00 0.00 3.84
409 410 1.338674 TGGTTAGCAGGTTGTCGATGG 60.339 52.381 0.00 0.00 0.00 3.51
410 411 0.727398 GTTAGCAGGTTGTCGATGGC 59.273 55.000 0.00 0.00 0.00 4.40
411 412 0.739462 TTAGCAGGTTGTCGATGGCG 60.739 55.000 0.00 0.00 39.35 5.69
412 413 2.572095 TAGCAGGTTGTCGATGGCGG 62.572 60.000 0.00 0.00 38.28 6.13
413 414 2.264480 CAGGTTGTCGATGGCGGA 59.736 61.111 0.00 0.00 38.28 5.54
414 415 1.811266 CAGGTTGTCGATGGCGGAG 60.811 63.158 0.00 0.00 38.28 4.63
415 416 1.982395 AGGTTGTCGATGGCGGAGA 60.982 57.895 0.00 0.00 38.28 3.71
416 417 1.079405 GGTTGTCGATGGCGGAGAA 60.079 57.895 0.00 0.00 38.28 2.87
417 418 1.084370 GGTTGTCGATGGCGGAGAAG 61.084 60.000 0.00 0.00 38.28 2.85
418 419 0.108804 GTTGTCGATGGCGGAGAAGA 60.109 55.000 0.00 0.00 38.28 2.87
419 420 0.108804 TTGTCGATGGCGGAGAAGAC 60.109 55.000 0.00 0.00 38.28 3.01
420 421 1.248101 TGTCGATGGCGGAGAAGACA 61.248 55.000 0.00 0.00 38.28 3.41
421 422 0.108804 GTCGATGGCGGAGAAGACAA 60.109 55.000 0.00 0.00 38.28 3.18
422 423 0.108804 TCGATGGCGGAGAAGACAAC 60.109 55.000 0.00 0.00 38.28 3.32
423 424 1.413767 CGATGGCGGAGAAGACAACG 61.414 60.000 0.00 0.00 38.96 4.10
424 425 0.108804 GATGGCGGAGAAGACAACGA 60.109 55.000 0.00 0.00 30.05 3.85
425 426 0.108615 ATGGCGGAGAAGACAACGAG 60.109 55.000 0.00 0.00 30.05 4.18
426 427 2.095252 GGCGGAGAAGACAACGAGC 61.095 63.158 0.00 0.00 0.00 5.03
427 428 1.080434 GCGGAGAAGACAACGAGCT 60.080 57.895 0.00 0.00 0.00 4.09
428 429 1.073768 GCGGAGAAGACAACGAGCTC 61.074 60.000 2.73 2.73 0.00 4.09
429 430 0.523966 CGGAGAAGACAACGAGCTCT 59.476 55.000 12.85 0.00 0.00 4.09
430 431 1.466697 CGGAGAAGACAACGAGCTCTC 60.467 57.143 12.85 2.06 0.00 3.20
431 432 1.135228 GGAGAAGACAACGAGCTCTCC 60.135 57.143 12.85 4.61 36.03 3.71
432 433 0.892063 AGAAGACAACGAGCTCTCCC 59.108 55.000 12.85 0.00 0.00 4.30
433 434 0.892063 GAAGACAACGAGCTCTCCCT 59.108 55.000 12.85 0.00 0.00 4.20
434 435 0.892063 AAGACAACGAGCTCTCCCTC 59.108 55.000 12.85 1.34 0.00 4.30
449 450 4.421479 CTCGGCGCGTGAGGACTT 62.421 66.667 18.86 0.00 0.00 3.01
450 451 4.717629 TCGGCGCGTGAGGACTTG 62.718 66.667 8.43 0.00 0.00 3.16
451 452 4.717629 CGGCGCGTGAGGACTTGA 62.718 66.667 8.43 0.00 0.00 3.02
452 453 2.811317 GGCGCGTGAGGACTTGAG 60.811 66.667 8.43 0.00 0.00 3.02
453 454 2.811317 GCGCGTGAGGACTTGAGG 60.811 66.667 8.43 0.00 0.00 3.86
454 455 2.651361 CGCGTGAGGACTTGAGGT 59.349 61.111 0.00 0.00 0.00 3.85
455 456 1.444553 CGCGTGAGGACTTGAGGTC 60.445 63.158 0.00 0.00 43.79 3.85
456 457 1.444553 GCGTGAGGACTTGAGGTCG 60.445 63.158 0.00 0.00 45.35 4.79
457 458 1.957562 CGTGAGGACTTGAGGTCGT 59.042 57.895 0.00 0.00 45.35 4.34
458 459 0.387367 CGTGAGGACTTGAGGTCGTG 60.387 60.000 0.00 0.00 45.35 4.35
459 460 0.038159 GTGAGGACTTGAGGTCGTGG 60.038 60.000 0.00 0.00 45.35 4.94
460 461 0.469331 TGAGGACTTGAGGTCGTGGT 60.469 55.000 0.00 0.00 45.35 4.16
461 462 0.244178 GAGGACTTGAGGTCGTGGTC 59.756 60.000 0.00 0.00 45.35 4.02
462 463 1.186267 AGGACTTGAGGTCGTGGTCC 61.186 60.000 0.00 0.00 45.35 4.46
463 464 1.080705 GACTTGAGGTCGTGGTCCG 60.081 63.158 0.00 0.00 35.07 4.79
464 465 2.261671 CTTGAGGTCGTGGTCCGG 59.738 66.667 0.00 0.00 37.11 5.14
465 466 3.934391 CTTGAGGTCGTGGTCCGGC 62.934 68.421 0.00 0.00 41.54 6.13
477 478 4.146156 TCCGGCGGGAGGGATGTA 62.146 66.667 27.98 0.00 37.43 2.29
478 479 3.616721 CCGGCGGGAGGGATGTAG 61.617 72.222 20.56 0.00 34.06 2.74
479 480 4.301027 CGGCGGGAGGGATGTAGC 62.301 72.222 0.00 0.00 0.00 3.58
480 481 4.301027 GGCGGGAGGGATGTAGCG 62.301 72.222 0.00 0.00 0.00 4.26
481 482 4.971125 GCGGGAGGGATGTAGCGC 62.971 72.222 0.00 0.00 0.00 5.92
482 483 3.227276 CGGGAGGGATGTAGCGCT 61.227 66.667 17.26 17.26 0.00 5.92
483 484 2.423446 GGGAGGGATGTAGCGCTG 59.577 66.667 22.90 0.00 0.00 5.18
484 485 2.280457 GGAGGGATGTAGCGCTGC 60.280 66.667 22.90 21.06 32.58 5.25
485 486 2.659897 GAGGGATGTAGCGCTGCG 60.660 66.667 22.90 19.17 0.00 5.18
510 511 3.520402 GAGGCAGGTCTCCTCGAG 58.480 66.667 5.13 5.13 40.51 4.04
511 512 2.757917 AGGCAGGTCTCCTCGAGC 60.758 66.667 6.99 0.00 40.43 5.03
512 513 3.844090 GGCAGGTCTCCTCGAGCC 61.844 72.222 6.99 2.40 41.03 4.70
513 514 3.844090 GCAGGTCTCCTCGAGCCC 61.844 72.222 6.99 3.74 41.03 5.19
514 515 3.151022 CAGGTCTCCTCGAGCCCC 61.151 72.222 6.99 3.37 41.03 5.80
515 516 4.467107 AGGTCTCCTCGAGCCCCC 62.467 72.222 6.99 3.74 41.03 5.40
516 517 4.779733 GGTCTCCTCGAGCCCCCA 62.780 72.222 6.99 0.00 34.06 4.96
517 518 3.462678 GTCTCCTCGAGCCCCCAC 61.463 72.222 6.99 0.00 0.00 4.61
518 519 4.779733 TCTCCTCGAGCCCCCACC 62.780 72.222 6.99 0.00 0.00 4.61
537 538 4.862092 CTCGAGCAGGCGCGTCAT 62.862 66.667 15.58 0.00 45.49 3.06
540 541 2.815211 GAGCAGGCGCGTCATGAA 60.815 61.111 15.58 0.00 45.49 2.57
541 542 3.088500 GAGCAGGCGCGTCATGAAC 62.089 63.158 15.58 5.07 45.49 3.18
542 543 4.166011 GCAGGCGCGTCATGAACC 62.166 66.667 15.58 0.00 0.00 3.62
543 544 3.853330 CAGGCGCGTCATGAACCG 61.853 66.667 15.58 4.30 0.00 4.44
546 547 3.849953 GCGCGTCATGAACCGGAC 61.850 66.667 9.46 1.77 0.00 4.79
550 551 3.474806 GTCATGAACCGGACGCTG 58.525 61.111 9.46 0.00 0.00 5.18
551 552 2.434185 TCATGAACCGGACGCTGC 60.434 61.111 9.46 0.00 0.00 5.25
552 553 3.853330 CATGAACCGGACGCTGCG 61.853 66.667 21.91 21.91 0.00 5.18
553 554 4.373116 ATGAACCGGACGCTGCGT 62.373 61.111 29.37 29.37 45.10 5.24
554 555 3.876589 ATGAACCGGACGCTGCGTT 62.877 57.895 29.54 12.98 41.37 4.84
555 556 3.774702 GAACCGGACGCTGCGTTC 61.775 66.667 29.54 26.23 41.37 3.95
876 877 3.075432 CCCTTTCCTTTCCCACCTTCTTA 59.925 47.826 0.00 0.00 0.00 2.10
1723 1724 8.519799 TCCTCTGTTTTTGTTCTTCAGTTAAT 57.480 30.769 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.694696 ACCTTGTCGCTCTTCTTTCCT 59.305 47.619 0.00 0.00 0.00 3.36
3 4 2.755650 TGACCTTGTCGCTCTTCTTTC 58.244 47.619 0.00 0.00 34.95 2.62
4 5 2.910688 TGACCTTGTCGCTCTTCTTT 57.089 45.000 0.00 0.00 34.95 2.52
5 6 2.910688 TTGACCTTGTCGCTCTTCTT 57.089 45.000 0.00 0.00 34.95 2.52
6 7 2.910688 TTTGACCTTGTCGCTCTTCT 57.089 45.000 0.00 0.00 34.95 2.85
7 8 4.024048 TCAAATTTGACCTTGTCGCTCTTC 60.024 41.667 16.91 0.00 34.95 2.87
9 10 3.476552 TCAAATTTGACCTTGTCGCTCT 58.523 40.909 16.91 0.00 34.95 4.09
10 11 3.896648 TCAAATTTGACCTTGTCGCTC 57.103 42.857 16.91 0.00 34.95 5.03
21 22 4.120792 TGCTGCAAACAGTCAAATTTGA 57.879 36.364 16.91 16.91 46.30 2.69
22 23 4.319190 CCATGCTGCAAACAGTCAAATTTG 60.319 41.667 12.15 12.15 46.30 2.32
23 24 3.810941 CCATGCTGCAAACAGTCAAATTT 59.189 39.130 6.36 0.00 46.30 1.82
24 25 3.395639 CCATGCTGCAAACAGTCAAATT 58.604 40.909 6.36 0.00 46.30 1.82
25 26 2.289195 CCCATGCTGCAAACAGTCAAAT 60.289 45.455 6.36 0.00 46.30 2.32
26 27 1.068895 CCCATGCTGCAAACAGTCAAA 59.931 47.619 6.36 0.00 46.30 2.69
27 28 0.675083 CCCATGCTGCAAACAGTCAA 59.325 50.000 6.36 0.00 46.30 3.18
28 29 0.178995 TCCCATGCTGCAAACAGTCA 60.179 50.000 6.36 0.00 46.30 3.41
29 30 0.524862 CTCCCATGCTGCAAACAGTC 59.475 55.000 6.36 0.00 46.30 3.51
30 31 1.530013 GCTCCCATGCTGCAAACAGT 61.530 55.000 6.36 0.00 46.30 3.55
32 33 0.038021 TAGCTCCCATGCTGCAAACA 59.962 50.000 6.36 0.00 43.87 2.83
33 34 0.737219 CTAGCTCCCATGCTGCAAAC 59.263 55.000 6.36 0.00 43.87 2.93
34 35 0.394762 CCTAGCTCCCATGCTGCAAA 60.395 55.000 6.36 0.00 43.87 3.68
35 36 1.225426 CCTAGCTCCCATGCTGCAA 59.775 57.895 6.36 0.00 43.87 4.08
36 37 2.749584 CCCTAGCTCCCATGCTGCA 61.750 63.158 4.13 4.13 43.87 4.41
37 38 2.112718 CCCTAGCTCCCATGCTGC 59.887 66.667 0.00 0.00 43.87 5.25
38 39 0.257039 AAACCCTAGCTCCCATGCTG 59.743 55.000 0.00 0.00 43.87 4.41
39 40 0.548510 GAAACCCTAGCTCCCATGCT 59.451 55.000 0.00 0.00 46.11 3.79
40 41 0.548510 AGAAACCCTAGCTCCCATGC 59.451 55.000 0.00 0.00 0.00 4.06
41 42 1.839994 TGAGAAACCCTAGCTCCCATG 59.160 52.381 0.00 0.00 0.00 3.66
42 43 1.840635 GTGAGAAACCCTAGCTCCCAT 59.159 52.381 0.00 0.00 0.00 4.00
43 44 1.276622 GTGAGAAACCCTAGCTCCCA 58.723 55.000 0.00 0.00 0.00 4.37
44 45 1.276622 TGTGAGAAACCCTAGCTCCC 58.723 55.000 0.00 0.00 0.00 4.30
45 46 2.303311 ACTTGTGAGAAACCCTAGCTCC 59.697 50.000 0.00 0.00 0.00 4.70
46 47 3.686916 ACTTGTGAGAAACCCTAGCTC 57.313 47.619 0.00 0.00 0.00 4.09
47 48 3.648545 AGAACTTGTGAGAAACCCTAGCT 59.351 43.478 0.00 0.00 0.00 3.32
48 49 4.009370 AGAACTTGTGAGAAACCCTAGC 57.991 45.455 0.00 0.00 0.00 3.42
49 50 5.859495 AGAAGAACTTGTGAGAAACCCTAG 58.141 41.667 0.00 0.00 0.00 3.02
50 51 5.221661 GGAGAAGAACTTGTGAGAAACCCTA 60.222 44.000 0.00 0.00 0.00 3.53
51 52 4.445019 GGAGAAGAACTTGTGAGAAACCCT 60.445 45.833 0.00 0.00 0.00 4.34
52 53 3.815962 GGAGAAGAACTTGTGAGAAACCC 59.184 47.826 0.00 0.00 0.00 4.11
53 54 4.709250 AGGAGAAGAACTTGTGAGAAACC 58.291 43.478 0.00 0.00 0.00 3.27
54 55 4.446051 CGAGGAGAAGAACTTGTGAGAAAC 59.554 45.833 0.00 0.00 0.00 2.78
55 56 4.621991 CGAGGAGAAGAACTTGTGAGAAA 58.378 43.478 0.00 0.00 0.00 2.52
56 57 3.553096 GCGAGGAGAAGAACTTGTGAGAA 60.553 47.826 0.00 0.00 0.00 2.87
57 58 2.029828 GCGAGGAGAAGAACTTGTGAGA 60.030 50.000 0.00 0.00 0.00 3.27
58 59 2.333014 GCGAGGAGAAGAACTTGTGAG 58.667 52.381 0.00 0.00 0.00 3.51
59 60 1.000955 GGCGAGGAGAAGAACTTGTGA 59.999 52.381 0.00 0.00 0.00 3.58
60 61 1.433534 GGCGAGGAGAAGAACTTGTG 58.566 55.000 0.00 0.00 0.00 3.33
61 62 0.038159 CGGCGAGGAGAAGAACTTGT 60.038 55.000 0.00 0.00 0.00 3.16
62 63 1.355066 GCGGCGAGGAGAAGAACTTG 61.355 60.000 12.98 0.00 0.00 3.16
63 64 1.079750 GCGGCGAGGAGAAGAACTT 60.080 57.895 12.98 0.00 0.00 2.66
64 65 2.574399 GCGGCGAGGAGAAGAACT 59.426 61.111 12.98 0.00 0.00 3.01
65 66 2.509561 GGCGGCGAGGAGAAGAAC 60.510 66.667 12.98 0.00 0.00 3.01
66 67 4.129737 CGGCGGCGAGGAGAAGAA 62.130 66.667 29.19 0.00 0.00 2.52
78 79 4.812476 TCACAGAATCGGCGGCGG 62.812 66.667 31.73 17.08 0.00 6.13
79 80 3.257561 CTCACAGAATCGGCGGCG 61.258 66.667 27.15 27.15 0.00 6.46
80 81 2.852495 TTCCTCACAGAATCGGCGGC 62.852 60.000 7.21 0.00 0.00 6.53
81 82 0.179073 ATTCCTCACAGAATCGGCGG 60.179 55.000 7.21 0.00 30.51 6.13
82 83 2.509052 TATTCCTCACAGAATCGGCG 57.491 50.000 0.00 0.00 37.62 6.46
83 84 2.545946 GCTTATTCCTCACAGAATCGGC 59.454 50.000 0.00 0.00 37.62 5.54
84 85 3.557595 GTGCTTATTCCTCACAGAATCGG 59.442 47.826 0.00 0.00 37.62 4.18
85 86 4.437239 AGTGCTTATTCCTCACAGAATCG 58.563 43.478 0.00 0.00 37.62 3.34
86 87 8.082334 GAATAGTGCTTATTCCTCACAGAATC 57.918 38.462 9.20 0.00 41.13 2.52
97 98 4.621991 TGCGAGAGGAATAGTGCTTATTC 58.378 43.478 11.03 11.03 44.59 1.75
98 99 4.672587 TGCGAGAGGAATAGTGCTTATT 57.327 40.909 0.00 0.00 34.65 1.40
99 100 4.881019 ATGCGAGAGGAATAGTGCTTAT 57.119 40.909 0.00 0.00 32.68 1.73
100 101 4.321304 GCTATGCGAGAGGAATAGTGCTTA 60.321 45.833 0.00 0.00 32.68 3.09
101 102 3.553922 GCTATGCGAGAGGAATAGTGCTT 60.554 47.826 0.00 0.00 32.68 3.91
102 103 2.029470 GCTATGCGAGAGGAATAGTGCT 60.029 50.000 0.00 0.00 32.68 4.40
103 104 2.333014 GCTATGCGAGAGGAATAGTGC 58.667 52.381 0.00 0.00 32.68 4.40
126 127 4.200283 GAGAGGAGGGCGCTGTCG 62.200 72.222 8.56 0.00 39.07 4.35
127 128 2.362329 GATGAGAGGAGGGCGCTGTC 62.362 65.000 8.56 4.70 0.00 3.51
128 129 2.364842 ATGAGAGGAGGGCGCTGT 60.365 61.111 8.56 0.00 0.00 4.40
129 130 2.420890 GATGAGAGGAGGGCGCTG 59.579 66.667 8.56 0.00 0.00 5.18
130 131 2.841988 GGATGAGAGGAGGGCGCT 60.842 66.667 7.64 1.38 0.00 5.92
131 132 3.934962 GGGATGAGAGGAGGGCGC 61.935 72.222 0.00 0.00 0.00 6.53
132 133 3.237741 GGGGATGAGAGGAGGGCG 61.238 72.222 0.00 0.00 0.00 6.13
133 134 1.841103 GAGGGGATGAGAGGAGGGC 60.841 68.421 0.00 0.00 0.00 5.19
134 135 1.532794 CGAGGGGATGAGAGGAGGG 60.533 68.421 0.00 0.00 0.00 4.30
135 136 2.206536 GCGAGGGGATGAGAGGAGG 61.207 68.421 0.00 0.00 0.00 4.30
136 137 1.045350 TTGCGAGGGGATGAGAGGAG 61.045 60.000 0.00 0.00 0.00 3.69
137 138 1.001631 TTGCGAGGGGATGAGAGGA 59.998 57.895 0.00 0.00 0.00 3.71
138 139 1.144936 GTTGCGAGGGGATGAGAGG 59.855 63.158 0.00 0.00 0.00 3.69
139 140 1.227089 CGTTGCGAGGGGATGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
140 141 1.254975 TTCGTTGCGAGGGGATGAGA 61.255 55.000 0.00 0.00 37.14 3.27
141 142 0.391130 TTTCGTTGCGAGGGGATGAG 60.391 55.000 0.00 0.00 37.14 2.90
142 143 0.251916 ATTTCGTTGCGAGGGGATGA 59.748 50.000 0.00 0.00 37.14 2.92
143 144 0.657840 GATTTCGTTGCGAGGGGATG 59.342 55.000 0.00 0.00 37.14 3.51
144 145 0.463833 GGATTTCGTTGCGAGGGGAT 60.464 55.000 0.00 0.00 37.14 3.85
145 146 1.078708 GGATTTCGTTGCGAGGGGA 60.079 57.895 0.00 0.00 37.14 4.81
146 147 0.177141 TAGGATTTCGTTGCGAGGGG 59.823 55.000 0.00 0.00 37.14 4.79
147 148 2.018542 TTAGGATTTCGTTGCGAGGG 57.981 50.000 0.00 0.00 37.14 4.30
148 149 3.425758 GGTTTTAGGATTTCGTTGCGAGG 60.426 47.826 0.00 0.00 37.14 4.63
149 150 3.723835 CGGTTTTAGGATTTCGTTGCGAG 60.724 47.826 0.00 0.00 37.14 5.03
150 151 2.158058 CGGTTTTAGGATTTCGTTGCGA 59.842 45.455 0.00 0.00 0.00 5.10
151 152 2.096119 ACGGTTTTAGGATTTCGTTGCG 60.096 45.455 0.00 0.00 0.00 4.85
152 153 3.231160 CACGGTTTTAGGATTTCGTTGC 58.769 45.455 0.00 0.00 0.00 4.17
153 154 3.817238 CCACGGTTTTAGGATTTCGTTG 58.183 45.455 0.00 0.00 0.00 4.10
154 155 2.227149 GCCACGGTTTTAGGATTTCGTT 59.773 45.455 0.00 0.00 0.00 3.85
155 156 1.808343 GCCACGGTTTTAGGATTTCGT 59.192 47.619 0.00 0.00 0.00 3.85
156 157 1.201987 CGCCACGGTTTTAGGATTTCG 60.202 52.381 0.00 0.00 0.00 3.46
157 158 2.078392 TCGCCACGGTTTTAGGATTTC 58.922 47.619 0.00 0.00 0.00 2.17
158 159 2.081462 CTCGCCACGGTTTTAGGATTT 58.919 47.619 0.00 0.00 0.00 2.17
159 160 1.734163 CTCGCCACGGTTTTAGGATT 58.266 50.000 0.00 0.00 0.00 3.01
160 161 0.743345 GCTCGCCACGGTTTTAGGAT 60.743 55.000 0.00 0.00 0.00 3.24
161 162 1.375013 GCTCGCCACGGTTTTAGGA 60.375 57.895 0.00 0.00 0.00 2.94
162 163 1.231958 TTGCTCGCCACGGTTTTAGG 61.232 55.000 0.00 0.00 0.00 2.69
163 164 0.110373 GTTGCTCGCCACGGTTTTAG 60.110 55.000 0.00 0.00 0.00 1.85
164 165 1.833434 CGTTGCTCGCCACGGTTTTA 61.833 55.000 7.53 0.00 0.00 1.52
165 166 2.719354 GTTGCTCGCCACGGTTTT 59.281 55.556 0.00 0.00 0.00 2.43
166 167 3.645975 CGTTGCTCGCCACGGTTT 61.646 61.111 7.53 0.00 0.00 3.27
167 168 4.903010 ACGTTGCTCGCCACGGTT 62.903 61.111 17.78 0.00 44.19 4.44
170 171 3.767230 CTCACGTTGCTCGCCACG 61.767 66.667 13.04 13.04 44.19 4.94
171 172 2.355837 TCTCACGTTGCTCGCCAC 60.356 61.111 0.00 0.00 44.19 5.01
172 173 1.877576 ATCTCTCACGTTGCTCGCCA 61.878 55.000 0.00 0.00 44.19 5.69
173 174 1.153745 ATCTCTCACGTTGCTCGCC 60.154 57.895 0.00 0.00 44.19 5.54
174 175 1.416813 CCATCTCTCACGTTGCTCGC 61.417 60.000 0.00 0.00 44.19 5.03
175 176 0.803768 CCCATCTCTCACGTTGCTCG 60.804 60.000 0.00 0.84 46.00 5.03
176 177 0.247736 ACCCATCTCTCACGTTGCTC 59.752 55.000 0.00 0.00 0.00 4.26
177 178 0.247736 GACCCATCTCTCACGTTGCT 59.752 55.000 0.00 0.00 0.00 3.91
178 179 0.741221 GGACCCATCTCTCACGTTGC 60.741 60.000 0.00 0.00 0.00 4.17
179 180 0.608130 TGGACCCATCTCTCACGTTG 59.392 55.000 0.00 0.00 0.00 4.10
180 181 0.898320 CTGGACCCATCTCTCACGTT 59.102 55.000 0.00 0.00 0.00 3.99
181 182 0.251832 ACTGGACCCATCTCTCACGT 60.252 55.000 0.00 0.00 0.00 4.49
182 183 0.174389 CACTGGACCCATCTCTCACG 59.826 60.000 0.00 0.00 0.00 4.35
183 184 1.066573 CACACTGGACCCATCTCTCAC 60.067 57.143 0.00 0.00 0.00 3.51
184 185 1.269958 CACACTGGACCCATCTCTCA 58.730 55.000 0.00 0.00 0.00 3.27
185 186 0.107945 GCACACTGGACCCATCTCTC 60.108 60.000 0.00 0.00 0.00 3.20
186 187 1.557269 GGCACACTGGACCCATCTCT 61.557 60.000 0.00 0.00 0.00 3.10
187 188 1.078143 GGCACACTGGACCCATCTC 60.078 63.158 0.00 0.00 0.00 2.75
188 189 1.847506 TGGCACACTGGACCCATCT 60.848 57.895 0.00 0.00 0.00 2.90
189 190 2.756400 TGGCACACTGGACCCATC 59.244 61.111 0.00 0.00 0.00 3.51
200 201 2.265739 GCTCATCTCCGTGGCACA 59.734 61.111 19.09 0.00 0.00 4.57
201 202 2.512515 GGCTCATCTCCGTGGCAC 60.513 66.667 7.79 7.79 0.00 5.01
202 203 3.785859 GGGCTCATCTCCGTGGCA 61.786 66.667 0.00 0.00 0.00 4.92
203 204 4.899239 CGGGCTCATCTCCGTGGC 62.899 72.222 0.00 0.00 41.23 5.01
204 205 4.227134 CCGGGCTCATCTCCGTGG 62.227 72.222 0.00 0.00 44.32 4.94
205 206 4.899239 GCCGGGCTCATCTCCGTG 62.899 72.222 12.87 0.00 44.32 4.94
207 208 4.899239 GTGCCGGGCTCATCTCCG 62.899 72.222 21.46 0.00 45.29 4.63
208 209 2.134287 TAGTGCCGGGCTCATCTCC 61.134 63.158 21.46 0.00 0.00 3.71
209 210 1.068250 GTAGTGCCGGGCTCATCTC 59.932 63.158 21.46 5.03 0.00 2.75
210 211 1.680522 CTGTAGTGCCGGGCTCATCT 61.681 60.000 21.46 14.62 0.00 2.90
211 212 1.227380 CTGTAGTGCCGGGCTCATC 60.227 63.158 21.46 13.42 0.00 2.92
212 213 2.903357 CTGTAGTGCCGGGCTCAT 59.097 61.111 21.46 8.44 0.00 2.90
213 214 4.082523 GCTGTAGTGCCGGGCTCA 62.083 66.667 21.46 12.55 0.00 4.26
214 215 4.840005 GGCTGTAGTGCCGGGCTC 62.840 72.222 21.46 17.13 43.74 4.70
221 222 1.672356 CTGTGGTGGGCTGTAGTGC 60.672 63.158 0.00 0.00 0.00 4.40
222 223 1.003355 CCTGTGGTGGGCTGTAGTG 60.003 63.158 0.00 0.00 0.00 2.74
223 224 2.224159 CCCTGTGGTGGGCTGTAGT 61.224 63.158 0.00 0.00 40.84 2.73
224 225 2.671070 CCCTGTGGTGGGCTGTAG 59.329 66.667 0.00 0.00 40.84 2.74
235 236 2.282674 AGCATGCACCACCCTGTG 60.283 61.111 21.98 0.00 39.29 3.66
236 237 2.282674 CAGCATGCACCACCCTGT 60.283 61.111 21.98 0.00 0.00 4.00
253 254 2.879070 CGAGAGGACATGCATGCGC 61.879 63.158 26.53 17.92 39.24 6.09
254 255 3.316821 CGAGAGGACATGCATGCG 58.683 61.111 26.53 16.22 0.00 4.73
282 283 0.178068 ATGATCCTCAACCGGAACCG 59.822 55.000 9.46 6.25 36.49 4.44
283 284 1.065418 ACATGATCCTCAACCGGAACC 60.065 52.381 9.46 0.00 36.49 3.62
284 285 2.280628 GACATGATCCTCAACCGGAAC 58.719 52.381 9.46 0.00 36.49 3.62
285 286 1.134818 CGACATGATCCTCAACCGGAA 60.135 52.381 9.46 0.00 36.49 4.30
286 287 0.459899 CGACATGATCCTCAACCGGA 59.540 55.000 9.46 0.00 37.50 5.14
287 288 0.530650 CCGACATGATCCTCAACCGG 60.531 60.000 0.00 0.00 33.17 5.28
288 289 0.175760 ACCGACATGATCCTCAACCG 59.824 55.000 0.00 0.00 0.00 4.44
289 290 1.207089 TCACCGACATGATCCTCAACC 59.793 52.381 0.00 0.00 0.00 3.77
290 291 2.672961 TCACCGACATGATCCTCAAC 57.327 50.000 0.00 0.00 0.00 3.18
291 292 3.694043 TTTCACCGACATGATCCTCAA 57.306 42.857 0.00 0.00 0.00 3.02
292 293 3.912496 ATTTCACCGACATGATCCTCA 57.088 42.857 0.00 0.00 0.00 3.86
293 294 4.693283 TGTATTTCACCGACATGATCCTC 58.307 43.478 0.00 0.00 0.00 3.71
294 295 4.697514 CTGTATTTCACCGACATGATCCT 58.302 43.478 0.00 0.00 0.00 3.24
295 296 3.248602 GCTGTATTTCACCGACATGATCC 59.751 47.826 0.00 0.00 0.00 3.36
296 297 3.060272 CGCTGTATTTCACCGACATGATC 60.060 47.826 0.00 0.00 0.00 2.92
297 298 2.866156 CGCTGTATTTCACCGACATGAT 59.134 45.455 0.00 0.00 0.00 2.45
298 299 2.267426 CGCTGTATTTCACCGACATGA 58.733 47.619 0.00 0.00 0.00 3.07
299 300 1.999735 ACGCTGTATTTCACCGACATG 59.000 47.619 0.00 0.00 0.00 3.21
300 301 2.268298 GACGCTGTATTTCACCGACAT 58.732 47.619 0.00 0.00 0.00 3.06
301 302 1.000052 TGACGCTGTATTTCACCGACA 60.000 47.619 0.00 0.00 30.49 4.35
302 303 1.705256 TGACGCTGTATTTCACCGAC 58.295 50.000 0.00 0.00 0.00 4.79
303 304 2.267426 CATGACGCTGTATTTCACCGA 58.733 47.619 0.00 0.00 0.00 4.69
304 305 1.327460 CCATGACGCTGTATTTCACCG 59.673 52.381 0.00 0.00 0.00 4.94
305 306 1.064060 GCCATGACGCTGTATTTCACC 59.936 52.381 0.00 0.00 0.00 4.02
306 307 1.267532 CGCCATGACGCTGTATTTCAC 60.268 52.381 0.00 0.00 0.00 3.18
307 308 1.006086 CGCCATGACGCTGTATTTCA 58.994 50.000 0.00 0.00 0.00 2.69
308 309 1.286501 TCGCCATGACGCTGTATTTC 58.713 50.000 0.00 0.00 0.00 2.17
309 310 1.665679 CTTCGCCATGACGCTGTATTT 59.334 47.619 0.00 0.00 0.00 1.40
310 311 1.134818 TCTTCGCCATGACGCTGTATT 60.135 47.619 0.00 0.00 0.00 1.89
311 312 0.459899 TCTTCGCCATGACGCTGTAT 59.540 50.000 0.00 0.00 0.00 2.29
312 313 0.179137 CTCTTCGCCATGACGCTGTA 60.179 55.000 0.00 0.00 0.00 2.74
313 314 1.446792 CTCTTCGCCATGACGCTGT 60.447 57.895 0.00 0.00 0.00 4.40
314 315 2.169789 CCTCTTCGCCATGACGCTG 61.170 63.158 0.00 0.00 0.00 5.18
315 316 2.185350 CCTCTTCGCCATGACGCT 59.815 61.111 0.00 0.00 0.00 5.07
316 317 3.567797 GCCTCTTCGCCATGACGC 61.568 66.667 0.00 0.00 0.00 5.19
317 318 2.169789 CAGCCTCTTCGCCATGACG 61.170 63.158 0.00 0.00 0.00 4.35
318 319 2.467826 GCAGCCTCTTCGCCATGAC 61.468 63.158 0.00 0.00 0.00 3.06
319 320 2.124983 GCAGCCTCTTCGCCATGA 60.125 61.111 0.00 0.00 0.00 3.07
320 321 2.437180 TGCAGCCTCTTCGCCATG 60.437 61.111 0.00 0.00 0.00 3.66
321 322 2.124819 CTGCAGCCTCTTCGCCAT 60.125 61.111 0.00 0.00 0.00 4.40
322 323 3.182590 AACTGCAGCCTCTTCGCCA 62.183 57.895 15.27 0.00 0.00 5.69
323 324 2.359230 AACTGCAGCCTCTTCGCC 60.359 61.111 15.27 0.00 0.00 5.54
324 325 2.684843 CCAACTGCAGCCTCTTCGC 61.685 63.158 15.27 0.00 0.00 4.70
325 326 2.684843 GCCAACTGCAGCCTCTTCG 61.685 63.158 15.27 0.00 40.77 3.79
326 327 2.684843 CGCCAACTGCAGCCTCTTC 61.685 63.158 15.27 0.00 41.33 2.87
327 328 2.670934 CGCCAACTGCAGCCTCTT 60.671 61.111 15.27 0.00 41.33 2.85
328 329 3.630013 TCGCCAACTGCAGCCTCT 61.630 61.111 15.27 0.00 41.33 3.69
329 330 3.426568 GTCGCCAACTGCAGCCTC 61.427 66.667 15.27 0.00 41.33 4.70
332 333 3.782244 CTCGTCGCCAACTGCAGC 61.782 66.667 15.27 0.00 41.33 5.25
333 334 2.842394 ATCCTCGTCGCCAACTGCAG 62.842 60.000 13.48 13.48 41.33 4.41
334 335 2.942796 ATCCTCGTCGCCAACTGCA 61.943 57.895 0.00 0.00 41.33 4.41
335 336 2.125512 ATCCTCGTCGCCAACTGC 60.126 61.111 0.00 0.00 0.00 4.40
336 337 1.078759 GACATCCTCGTCGCCAACTG 61.079 60.000 0.00 0.00 0.00 3.16
337 338 1.215647 GACATCCTCGTCGCCAACT 59.784 57.895 0.00 0.00 0.00 3.16
338 339 1.810030 GGACATCCTCGTCGCCAAC 60.810 63.158 0.00 0.00 36.73 3.77
339 340 1.982395 AGGACATCCTCGTCGCCAA 60.982 57.895 0.00 0.00 44.77 4.52
340 341 2.362503 AGGACATCCTCGTCGCCA 60.363 61.111 0.00 0.00 44.77 5.69
354 355 0.836400 GACAAGGTGTCCCTGGAGGA 60.836 60.000 0.00 0.00 41.56 3.71
355 356 1.127567 TGACAAGGTGTCCCTGGAGG 61.128 60.000 5.96 0.00 46.40 4.30
356 357 0.035458 GTGACAAGGTGTCCCTGGAG 59.965 60.000 5.96 0.00 46.40 3.86
357 358 1.415672 GGTGACAAGGTGTCCCTGGA 61.416 60.000 5.96 0.00 46.40 3.86
358 359 1.073199 GGTGACAAGGTGTCCCTGG 59.927 63.158 5.96 0.00 46.40 4.45
359 360 0.474184 AAGGTGACAAGGTGTCCCTG 59.526 55.000 15.01 0.00 46.40 4.45
360 361 1.978580 CTAAGGTGACAAGGTGTCCCT 59.021 52.381 5.96 8.74 46.40 4.20
361 362 1.697982 ACTAAGGTGACAAGGTGTCCC 59.302 52.381 5.96 6.81 46.40 4.46
362 363 2.633481 AGACTAAGGTGACAAGGTGTCC 59.367 50.000 5.96 0.00 46.40 4.02
364 365 3.181454 CCAAGACTAAGGTGACAAGGTGT 60.181 47.826 0.00 0.00 0.00 4.16
365 366 3.403038 CCAAGACTAAGGTGACAAGGTG 58.597 50.000 0.00 0.00 0.00 4.00
366 367 2.224548 GCCAAGACTAAGGTGACAAGGT 60.225 50.000 0.00 0.00 0.00 3.50
367 368 2.039084 AGCCAAGACTAAGGTGACAAGG 59.961 50.000 0.00 0.00 0.00 3.61
368 369 3.409026 AGCCAAGACTAAGGTGACAAG 57.591 47.619 0.00 0.00 0.00 3.16
369 370 3.476552 CAAGCCAAGACTAAGGTGACAA 58.523 45.455 0.00 0.00 0.00 3.18
370 371 2.224523 CCAAGCCAAGACTAAGGTGACA 60.225 50.000 0.00 0.00 0.00 3.58
371 372 2.224548 ACCAAGCCAAGACTAAGGTGAC 60.225 50.000 0.00 0.00 29.74 3.67
372 373 2.054799 ACCAAGCCAAGACTAAGGTGA 58.945 47.619 0.00 0.00 29.74 4.02
373 374 2.568623 ACCAAGCCAAGACTAAGGTG 57.431 50.000 0.00 0.00 29.74 4.00
374 375 3.559384 GCTAACCAAGCCAAGACTAAGGT 60.559 47.826 0.00 0.00 46.25 3.50
375 376 3.010420 GCTAACCAAGCCAAGACTAAGG 58.990 50.000 0.00 0.00 46.25 2.69
387 388 2.163818 TCGACAACCTGCTAACCAAG 57.836 50.000 0.00 0.00 0.00 3.61
388 389 2.422597 CATCGACAACCTGCTAACCAA 58.577 47.619 0.00 0.00 0.00 3.67
389 390 1.338674 CCATCGACAACCTGCTAACCA 60.339 52.381 0.00 0.00 0.00 3.67
390 391 1.369625 CCATCGACAACCTGCTAACC 58.630 55.000 0.00 0.00 0.00 2.85
391 392 0.727398 GCCATCGACAACCTGCTAAC 59.273 55.000 0.00 0.00 0.00 2.34
392 393 0.739462 CGCCATCGACAACCTGCTAA 60.739 55.000 0.00 0.00 38.10 3.09
393 394 1.153647 CGCCATCGACAACCTGCTA 60.154 57.895 0.00 0.00 38.10 3.49
394 395 2.434884 CGCCATCGACAACCTGCT 60.435 61.111 0.00 0.00 38.10 4.24
395 396 3.499737 CCGCCATCGACAACCTGC 61.500 66.667 0.00 0.00 38.10 4.85
396 397 1.811266 CTCCGCCATCGACAACCTG 60.811 63.158 0.00 0.00 38.10 4.00
397 398 1.541310 TTCTCCGCCATCGACAACCT 61.541 55.000 0.00 0.00 38.10 3.50
398 399 1.079405 TTCTCCGCCATCGACAACC 60.079 57.895 0.00 0.00 38.10 3.77
399 400 0.108804 TCTTCTCCGCCATCGACAAC 60.109 55.000 0.00 0.00 38.10 3.32
400 401 0.108804 GTCTTCTCCGCCATCGACAA 60.109 55.000 0.00 0.00 38.10 3.18
401 402 1.248101 TGTCTTCTCCGCCATCGACA 61.248 55.000 0.00 0.00 38.10 4.35
402 403 0.108804 TTGTCTTCTCCGCCATCGAC 60.109 55.000 0.00 0.00 38.10 4.20
403 404 0.108804 GTTGTCTTCTCCGCCATCGA 60.109 55.000 0.00 0.00 38.10 3.59
404 405 1.413767 CGTTGTCTTCTCCGCCATCG 61.414 60.000 0.00 0.00 0.00 3.84
405 406 0.108804 TCGTTGTCTTCTCCGCCATC 60.109 55.000 0.00 0.00 0.00 3.51
406 407 0.108615 CTCGTTGTCTTCTCCGCCAT 60.109 55.000 0.00 0.00 0.00 4.40
407 408 1.289066 CTCGTTGTCTTCTCCGCCA 59.711 57.895 0.00 0.00 0.00 5.69
408 409 2.095252 GCTCGTTGTCTTCTCCGCC 61.095 63.158 0.00 0.00 0.00 6.13
409 410 1.073768 GAGCTCGTTGTCTTCTCCGC 61.074 60.000 0.00 0.00 0.00 5.54
410 411 0.523966 AGAGCTCGTTGTCTTCTCCG 59.476 55.000 8.37 0.00 0.00 4.63
411 412 1.135228 GGAGAGCTCGTTGTCTTCTCC 60.135 57.143 8.37 2.43 36.03 3.71
412 413 1.135228 GGGAGAGCTCGTTGTCTTCTC 60.135 57.143 8.37 0.00 0.00 2.87
413 414 0.892063 GGGAGAGCTCGTTGTCTTCT 59.108 55.000 8.37 0.00 0.00 2.85
414 415 0.892063 AGGGAGAGCTCGTTGTCTTC 59.108 55.000 8.37 0.00 0.00 2.87
415 416 0.892063 GAGGGAGAGCTCGTTGTCTT 59.108 55.000 8.37 0.00 0.00 3.01
416 417 1.309499 CGAGGGAGAGCTCGTTGTCT 61.309 60.000 8.37 3.04 38.18 3.41
417 418 1.137825 CGAGGGAGAGCTCGTTGTC 59.862 63.158 8.37 0.00 38.18 3.18
418 419 2.344203 CCGAGGGAGAGCTCGTTGT 61.344 63.158 8.37 0.00 41.01 3.32
419 420 2.492090 CCGAGGGAGAGCTCGTTG 59.508 66.667 8.37 0.00 41.01 4.10
420 421 3.453679 GCCGAGGGAGAGCTCGTT 61.454 66.667 8.37 0.00 41.01 3.85
432 433 4.421479 AAGTCCTCACGCGCCGAG 62.421 66.667 16.94 16.94 0.00 4.63
433 434 4.717629 CAAGTCCTCACGCGCCGA 62.718 66.667 5.73 1.41 0.00 5.54
434 435 4.717629 TCAAGTCCTCACGCGCCG 62.718 66.667 5.73 0.00 0.00 6.46
435 436 2.811317 CTCAAGTCCTCACGCGCC 60.811 66.667 5.73 0.00 0.00 6.53
436 437 2.811317 CCTCAAGTCCTCACGCGC 60.811 66.667 5.73 0.00 0.00 6.86
437 438 1.444553 GACCTCAAGTCCTCACGCG 60.445 63.158 3.53 3.53 39.84 6.01
438 439 1.444553 CGACCTCAAGTCCTCACGC 60.445 63.158 0.00 0.00 43.08 5.34
439 440 0.387367 CACGACCTCAAGTCCTCACG 60.387 60.000 0.00 0.00 43.08 4.35
440 441 0.038159 CCACGACCTCAAGTCCTCAC 60.038 60.000 0.00 0.00 43.08 3.51
441 442 0.469331 ACCACGACCTCAAGTCCTCA 60.469 55.000 0.00 0.00 43.08 3.86
442 443 0.244178 GACCACGACCTCAAGTCCTC 59.756 60.000 0.00 0.00 43.08 3.71
443 444 1.186267 GGACCACGACCTCAAGTCCT 61.186 60.000 0.00 0.00 43.08 3.85
444 445 1.292541 GGACCACGACCTCAAGTCC 59.707 63.158 0.00 0.00 43.08 3.85
445 446 4.990288 GGACCACGACCTCAAGTC 57.010 61.111 0.00 0.00 42.54 3.01
460 461 4.146156 TACATCCCTCCCGCCGGA 62.146 66.667 5.05 0.00 36.45 5.14
461 462 3.616721 CTACATCCCTCCCGCCGG 61.617 72.222 0.00 0.00 0.00 6.13
462 463 4.301027 GCTACATCCCTCCCGCCG 62.301 72.222 0.00 0.00 0.00 6.46
463 464 4.301027 CGCTACATCCCTCCCGCC 62.301 72.222 0.00 0.00 0.00 6.13
464 465 4.971125 GCGCTACATCCCTCCCGC 62.971 72.222 0.00 0.00 34.50 6.13
465 466 3.227276 AGCGCTACATCCCTCCCG 61.227 66.667 8.99 0.00 0.00 5.14
466 467 2.423446 CAGCGCTACATCCCTCCC 59.577 66.667 10.99 0.00 0.00 4.30
467 468 2.280457 GCAGCGCTACATCCCTCC 60.280 66.667 10.99 0.00 0.00 4.30
468 469 2.659897 CGCAGCGCTACATCCCTC 60.660 66.667 10.99 0.00 0.00 4.30
487 488 3.462678 GAGACCTGCCTCCCGGAC 61.463 72.222 0.73 0.00 0.00 4.79
488 489 4.779733 GGAGACCTGCCTCCCGGA 62.780 72.222 0.73 0.00 45.44 5.14
493 494 2.781158 GCTCGAGGAGACCTGCCTC 61.781 68.421 15.58 0.00 46.74 4.70
494 495 2.757917 GCTCGAGGAGACCTGCCT 60.758 66.667 15.58 0.00 38.81 4.75
495 496 3.844090 GGCTCGAGGAGACCTGCC 61.844 72.222 15.58 3.11 33.99 4.85
500 501 3.462678 GTGGGGGCTCGAGGAGAC 61.463 72.222 15.58 0.00 36.87 3.36
501 502 4.779733 GGTGGGGGCTCGAGGAGA 62.780 72.222 15.58 0.00 0.00 3.71
520 521 4.862092 ATGACGCGCCTGCTCGAG 62.862 66.667 5.73 8.45 39.65 4.04
523 524 2.815211 TTCATGACGCGCCTGCTC 60.815 61.111 5.73 0.00 39.65 4.26
524 525 3.121030 GTTCATGACGCGCCTGCT 61.121 61.111 5.73 0.00 39.65 4.24
525 526 4.166011 GGTTCATGACGCGCCTGC 62.166 66.667 5.73 0.00 37.91 4.85
526 527 3.853330 CGGTTCATGACGCGCCTG 61.853 66.667 5.73 0.55 0.00 4.85
529 530 3.849953 GTCCGGTTCATGACGCGC 61.850 66.667 5.73 0.00 0.00 6.86
530 531 3.541831 CGTCCGGTTCATGACGCG 61.542 66.667 3.53 3.53 46.41 6.01
533 534 2.740714 GCAGCGTCCGGTTCATGAC 61.741 63.158 0.00 0.00 0.00 3.06
534 535 2.434185 GCAGCGTCCGGTTCATGA 60.434 61.111 0.00 0.00 0.00 3.07
535 536 3.853330 CGCAGCGTCCGGTTCATG 61.853 66.667 6.65 0.00 0.00 3.07
536 537 3.876589 AACGCAGCGTCCGGTTCAT 62.877 57.895 23.22 0.00 39.99 2.57
537 538 4.595538 AACGCAGCGTCCGGTTCA 62.596 61.111 23.22 0.00 39.99 3.18
538 539 3.774702 GAACGCAGCGTCCGGTTC 61.775 66.667 23.22 11.10 39.99 3.62
557 558 1.829970 GGAGCTATTGGCCCCTTGC 60.830 63.158 0.00 0.00 43.05 4.01
876 877 0.460311 CGTTGCCGGAGTAGAGGAAT 59.540 55.000 5.05 0.00 0.00 3.01
1093 1094 5.071788 TGGTCAAGAACACAGATCTAACCTT 59.928 40.000 0.00 0.00 0.00 3.50
1723 1724 5.818678 ACTGAATTTGGGTGTGTACTCTA 57.181 39.130 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.