Multiple sequence alignment - TraesCS5B01G558400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G558400 chr5B 100.000 2531 0 0 1 2531 705811201 705813731 0 4674
1 TraesCS5B01G558400 chr5B 99.442 1971 11 0 561 2531 705827967 705825997 0 3579
2 TraesCS5B01G558400 chr3B 99.441 1969 11 0 563 2531 755291154 755293122 0 3576
3 TraesCS5B01G558400 chr1B 99.441 1969 11 0 563 2531 637367014 637365046 0 3576
4 TraesCS5B01G558400 chr7A 99.391 1969 12 0 563 2531 18280882 18278914 0 3570
5 TraesCS5B01G558400 chr7A 99.289 1969 13 1 563 2531 689379801 689381768 0 3557
6 TraesCS5B01G558400 chr7A 99.086 1969 18 0 563 2531 40032044 40034012 0 3537
7 TraesCS5B01G558400 chr7B 99.239 1970 14 1 563 2531 697603941 697601972 0 3554
8 TraesCS5B01G558400 chr4B 99.088 1974 16 1 560 2531 437234396 437236369 0 3544
9 TraesCS5B01G558400 chr3A 99.087 1972 14 2 560 2531 658743973 658742006 0 3539


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G558400 chr5B 705811201 705813731 2530 False 4674 4674 100.000 1 2531 1 chr5B.!!$F1 2530
1 TraesCS5B01G558400 chr5B 705825997 705827967 1970 True 3579 3579 99.442 561 2531 1 chr5B.!!$R1 1970
2 TraesCS5B01G558400 chr3B 755291154 755293122 1968 False 3576 3576 99.441 563 2531 1 chr3B.!!$F1 1968
3 TraesCS5B01G558400 chr1B 637365046 637367014 1968 True 3576 3576 99.441 563 2531 1 chr1B.!!$R1 1968
4 TraesCS5B01G558400 chr7A 18278914 18280882 1968 True 3570 3570 99.391 563 2531 1 chr7A.!!$R1 1968
5 TraesCS5B01G558400 chr7A 689379801 689381768 1967 False 3557 3557 99.289 563 2531 1 chr7A.!!$F2 1968
6 TraesCS5B01G558400 chr7A 40032044 40034012 1968 False 3537 3537 99.086 563 2531 1 chr7A.!!$F1 1968
7 TraesCS5B01G558400 chr7B 697601972 697603941 1969 True 3554 3554 99.239 563 2531 1 chr7B.!!$R1 1968
8 TraesCS5B01G558400 chr4B 437234396 437236369 1973 False 3544 3544 99.088 560 2531 1 chr4B.!!$F1 1971
9 TraesCS5B01G558400 chr3A 658742006 658743973 1967 True 3539 3539 99.087 560 2531 1 chr3A.!!$R1 1971

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.033796 AAGTGGGCATGTCTGGGATG 60.034 55.0 0.0 0.0 0.0 3.51 F
42 43 0.184451 GTGGGCATGTCTGGGATGAT 59.816 55.0 0.0 0.0 0.0 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1211 0.178961 GAACCTGAAAACAGGGGGCT 60.179 55.000 18.47 2.58 46.38 5.19 R
1800 1804 3.732048 TGGTTATTTTCTCAGGGTCCC 57.268 47.619 0.00 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.373186 GATACCGGTAAATCCAAAAGGAAG 57.627 41.667 20.22 0.00 35.57 3.46
24 25 4.108501 ACCGGTAAATCCAAAAGGAAGT 57.891 40.909 4.49 0.00 35.57 3.01
25 26 3.824443 ACCGGTAAATCCAAAAGGAAGTG 59.176 43.478 4.49 0.00 35.57 3.16
26 27 3.192633 CCGGTAAATCCAAAAGGAAGTGG 59.807 47.826 0.00 0.00 35.57 4.00
27 28 3.192633 CGGTAAATCCAAAAGGAAGTGGG 59.807 47.826 0.00 0.00 35.46 4.61
28 29 3.056107 GGTAAATCCAAAAGGAAGTGGGC 60.056 47.826 0.00 0.00 35.46 5.36
29 30 2.397044 AATCCAAAAGGAAGTGGGCA 57.603 45.000 0.00 0.00 35.46 5.36
30 31 2.629017 ATCCAAAAGGAAGTGGGCAT 57.371 45.000 0.00 0.00 35.46 4.40
31 32 1.631405 TCCAAAAGGAAGTGGGCATG 58.369 50.000 0.00 0.00 35.46 4.06
32 33 1.133199 TCCAAAAGGAAGTGGGCATGT 60.133 47.619 0.00 0.00 35.46 3.21
33 34 1.273327 CCAAAAGGAAGTGGGCATGTC 59.727 52.381 0.00 0.00 0.00 3.06
34 35 2.242043 CAAAAGGAAGTGGGCATGTCT 58.758 47.619 0.00 0.00 0.00 3.41
35 36 1.915141 AAAGGAAGTGGGCATGTCTG 58.085 50.000 0.00 0.00 0.00 3.51
36 37 0.038744 AAGGAAGTGGGCATGTCTGG 59.961 55.000 0.00 0.00 0.00 3.86
37 38 1.379044 GGAAGTGGGCATGTCTGGG 60.379 63.158 0.00 0.00 0.00 4.45
38 39 1.685224 GAAGTGGGCATGTCTGGGA 59.315 57.895 0.00 0.00 0.00 4.37
39 40 0.257039 GAAGTGGGCATGTCTGGGAT 59.743 55.000 0.00 0.00 0.00 3.85
40 41 0.033796 AAGTGGGCATGTCTGGGATG 60.034 55.000 0.00 0.00 0.00 3.51
41 42 0.915872 AGTGGGCATGTCTGGGATGA 60.916 55.000 0.00 0.00 0.00 2.92
42 43 0.184451 GTGGGCATGTCTGGGATGAT 59.816 55.000 0.00 0.00 0.00 2.45
43 44 1.421268 GTGGGCATGTCTGGGATGATA 59.579 52.381 0.00 0.00 0.00 2.15
44 45 1.701292 TGGGCATGTCTGGGATGATAG 59.299 52.381 0.00 0.00 0.00 2.08
45 46 1.612726 GGGCATGTCTGGGATGATAGC 60.613 57.143 0.00 0.00 0.00 2.97
46 47 1.350351 GGCATGTCTGGGATGATAGCT 59.650 52.381 0.00 0.00 0.00 3.32
47 48 2.614987 GGCATGTCTGGGATGATAGCTC 60.615 54.545 0.00 0.00 0.00 4.09
48 49 2.302445 GCATGTCTGGGATGATAGCTCT 59.698 50.000 0.00 0.00 0.00 4.09
49 50 3.513119 GCATGTCTGGGATGATAGCTCTA 59.487 47.826 0.00 0.00 0.00 2.43
50 51 4.161942 GCATGTCTGGGATGATAGCTCTAT 59.838 45.833 0.00 0.00 0.00 1.98
51 52 5.662456 CATGTCTGGGATGATAGCTCTATG 58.338 45.833 0.00 0.00 0.00 2.23
52 53 4.745351 TGTCTGGGATGATAGCTCTATGT 58.255 43.478 0.00 0.00 0.00 2.29
53 54 4.525874 TGTCTGGGATGATAGCTCTATGTG 59.474 45.833 0.00 0.00 0.00 3.21
54 55 4.769488 GTCTGGGATGATAGCTCTATGTGA 59.231 45.833 0.00 0.00 0.00 3.58
55 56 5.015515 TCTGGGATGATAGCTCTATGTGAG 58.984 45.833 0.00 0.00 45.33 3.51
56 57 5.003096 TGGGATGATAGCTCTATGTGAGA 57.997 43.478 0.00 0.00 45.39 3.27
57 58 5.587861 TGGGATGATAGCTCTATGTGAGAT 58.412 41.667 0.00 0.00 45.39 2.75
58 59 5.655974 TGGGATGATAGCTCTATGTGAGATC 59.344 44.000 0.00 0.00 45.39 2.75
59 60 5.655974 GGGATGATAGCTCTATGTGAGATCA 59.344 44.000 0.00 0.00 45.39 2.92
60 61 6.405731 GGGATGATAGCTCTATGTGAGATCAC 60.406 46.154 6.01 6.01 45.39 3.06
69 70 3.575506 GTGAGATCACATTGGGGCA 57.424 52.632 8.09 0.00 45.75 5.36
70 71 2.062971 GTGAGATCACATTGGGGCAT 57.937 50.000 8.09 0.00 45.75 4.40
71 72 3.213206 GTGAGATCACATTGGGGCATA 57.787 47.619 8.09 0.00 45.75 3.14
72 73 3.554934 GTGAGATCACATTGGGGCATAA 58.445 45.455 8.09 0.00 45.75 1.90
73 74 4.147321 GTGAGATCACATTGGGGCATAAT 58.853 43.478 8.09 0.00 45.75 1.28
74 75 5.316167 GTGAGATCACATTGGGGCATAATA 58.684 41.667 8.09 0.00 45.75 0.98
75 76 5.769662 GTGAGATCACATTGGGGCATAATAA 59.230 40.000 8.09 0.00 45.75 1.40
76 77 6.435277 GTGAGATCACATTGGGGCATAATAAT 59.565 38.462 8.09 0.00 45.75 1.28
77 78 7.011994 TGAGATCACATTGGGGCATAATAATT 58.988 34.615 0.00 0.00 0.00 1.40
78 79 7.177216 TGAGATCACATTGGGGCATAATAATTC 59.823 37.037 0.00 0.00 0.00 2.17
79 80 6.438425 AGATCACATTGGGGCATAATAATTCC 59.562 38.462 0.00 0.00 0.00 3.01
80 81 5.462240 TCACATTGGGGCATAATAATTCCA 58.538 37.500 0.00 0.00 0.00 3.53
81 82 5.901853 TCACATTGGGGCATAATAATTCCAA 59.098 36.000 0.00 0.00 38.43 3.53
82 83 6.558014 TCACATTGGGGCATAATAATTCCAAT 59.442 34.615 0.00 0.00 43.31 3.16
83 84 7.072202 TCACATTGGGGCATAATAATTCCAATT 59.928 33.333 0.00 0.00 41.39 2.32
84 85 7.720515 CACATTGGGGCATAATAATTCCAATTT 59.279 33.333 0.00 0.00 41.39 1.82
85 86 8.280807 ACATTGGGGCATAATAATTCCAATTTT 58.719 29.630 0.00 0.00 41.39 1.82
86 87 8.569641 CATTGGGGCATAATAATTCCAATTTTG 58.430 33.333 0.00 0.00 41.39 2.44
87 88 6.060788 TGGGGCATAATAATTCCAATTTTGC 58.939 36.000 6.40 6.40 39.25 3.68
88 89 6.060788 GGGGCATAATAATTCCAATTTTGCA 58.939 36.000 13.40 0.00 40.72 4.08
89 90 6.545298 GGGGCATAATAATTCCAATTTTGCAA 59.455 34.615 13.40 0.00 40.72 4.08
90 91 7.231115 GGGGCATAATAATTCCAATTTTGCAAT 59.769 33.333 0.00 0.00 40.72 3.56
91 92 9.282569 GGGCATAATAATTCCAATTTTGCAATA 57.717 29.630 0.00 0.00 40.72 1.90
117 118 9.733556 ATAATTTATGTGTGACTTCTGTAACCA 57.266 29.630 0.00 0.00 0.00 3.67
118 119 8.458573 AATTTATGTGTGACTTCTGTAACCAA 57.541 30.769 0.00 0.00 0.00 3.67
119 120 7.867305 TTTATGTGTGACTTCTGTAACCAAA 57.133 32.000 0.00 0.00 0.00 3.28
120 121 8.458573 TTTATGTGTGACTTCTGTAACCAAAT 57.541 30.769 0.00 0.00 0.00 2.32
121 122 5.749596 TGTGTGACTTCTGTAACCAAATG 57.250 39.130 0.00 0.00 0.00 2.32
122 123 5.189928 TGTGTGACTTCTGTAACCAAATGT 58.810 37.500 0.00 0.00 0.00 2.71
123 124 5.650266 TGTGTGACTTCTGTAACCAAATGTT 59.350 36.000 0.00 0.00 41.11 2.71
124 125 6.824196 TGTGTGACTTCTGTAACCAAATGTTA 59.176 34.615 0.00 0.00 38.42 2.41
125 126 7.337184 TGTGTGACTTCTGTAACCAAATGTTAA 59.663 33.333 0.00 0.00 41.00 2.01
126 127 8.185505 GTGTGACTTCTGTAACCAAATGTTAAA 58.814 33.333 0.00 0.00 41.00 1.52
127 128 8.908903 TGTGACTTCTGTAACCAAATGTTAAAT 58.091 29.630 0.00 0.00 41.00 1.40
128 129 9.744468 GTGACTTCTGTAACCAAATGTTAAATT 57.256 29.630 0.00 0.00 41.00 1.82
153 154 6.966534 AAACATCCTGAATTCATGGTATCC 57.033 37.500 8.96 0.00 0.00 2.59
154 155 4.990526 ACATCCTGAATTCATGGTATCCC 58.009 43.478 8.96 0.00 0.00 3.85
169 170 6.884472 TGGTATCCCATCTCACTAAAGAAA 57.116 37.500 0.00 0.00 35.17 2.52
170 171 7.265599 TGGTATCCCATCTCACTAAAGAAAA 57.734 36.000 0.00 0.00 35.17 2.29
171 172 7.872138 TGGTATCCCATCTCACTAAAGAAAAT 58.128 34.615 0.00 0.00 35.17 1.82
172 173 8.336235 TGGTATCCCATCTCACTAAAGAAAATT 58.664 33.333 0.00 0.00 35.17 1.82
173 174 9.847224 GGTATCCCATCTCACTAAAGAAAATTA 57.153 33.333 0.00 0.00 0.00 1.40
176 177 9.620259 ATCCCATCTCACTAAAGAAAATTAGAC 57.380 33.333 1.38 0.00 36.57 2.59
177 178 8.602424 TCCCATCTCACTAAAGAAAATTAGACA 58.398 33.333 1.38 0.00 36.57 3.41
178 179 9.231297 CCCATCTCACTAAAGAAAATTAGACAA 57.769 33.333 1.38 0.00 36.57 3.18
184 185 9.621629 TCACTAAAGAAAATTAGACAAAGGACA 57.378 29.630 1.38 0.00 36.57 4.02
185 186 9.884465 CACTAAAGAAAATTAGACAAAGGACAG 57.116 33.333 1.38 0.00 36.57 3.51
186 187 9.847224 ACTAAAGAAAATTAGACAAAGGACAGA 57.153 29.630 1.38 0.00 36.57 3.41
188 189 8.753497 AAAGAAAATTAGACAAAGGACAGAGT 57.247 30.769 0.00 0.00 0.00 3.24
189 190 8.753497 AAGAAAATTAGACAAAGGACAGAGTT 57.247 30.769 0.00 0.00 0.00 3.01
190 191 8.753497 AGAAAATTAGACAAAGGACAGAGTTT 57.247 30.769 0.00 0.00 0.00 2.66
191 192 9.847224 AGAAAATTAGACAAAGGACAGAGTTTA 57.153 29.630 0.00 0.00 0.00 2.01
194 195 9.847224 AAATTAGACAAAGGACAGAGTTTAAGA 57.153 29.630 0.00 0.00 0.00 2.10
195 196 9.847224 AATTAGACAAAGGACAGAGTTTAAGAA 57.153 29.630 0.00 0.00 0.00 2.52
196 197 8.888579 TTAGACAAAGGACAGAGTTTAAGAAG 57.111 34.615 0.00 0.00 0.00 2.85
197 198 5.760743 AGACAAAGGACAGAGTTTAAGAAGC 59.239 40.000 0.00 0.00 0.00 3.86
198 199 5.437060 ACAAAGGACAGAGTTTAAGAAGCA 58.563 37.500 0.00 0.00 0.00 3.91
199 200 6.064717 ACAAAGGACAGAGTTTAAGAAGCAT 58.935 36.000 0.00 0.00 0.00 3.79
200 201 6.547510 ACAAAGGACAGAGTTTAAGAAGCATT 59.452 34.615 0.00 0.00 0.00 3.56
201 202 7.719633 ACAAAGGACAGAGTTTAAGAAGCATTA 59.280 33.333 0.00 0.00 0.00 1.90
202 203 7.674471 AAGGACAGAGTTTAAGAAGCATTAC 57.326 36.000 0.00 0.00 0.00 1.89
203 204 6.174049 AGGACAGAGTTTAAGAAGCATTACC 58.826 40.000 0.00 0.00 0.00 2.85
204 205 6.013293 AGGACAGAGTTTAAGAAGCATTACCT 60.013 38.462 0.00 0.00 0.00 3.08
205 206 6.092807 GGACAGAGTTTAAGAAGCATTACCTG 59.907 42.308 0.00 0.00 0.00 4.00
219 220 5.256006 CATTACCTGCATCGATCGTAAAG 57.744 43.478 15.94 8.68 0.00 1.85
220 221 2.961526 ACCTGCATCGATCGTAAAGT 57.038 45.000 15.94 3.89 0.00 2.66
221 222 3.247006 ACCTGCATCGATCGTAAAGTT 57.753 42.857 15.94 0.00 0.00 2.66
222 223 2.930040 ACCTGCATCGATCGTAAAGTTG 59.070 45.455 15.94 5.90 0.00 3.16
223 224 2.285220 CCTGCATCGATCGTAAAGTTGG 59.715 50.000 15.94 6.49 0.00 3.77
224 225 3.186909 CTGCATCGATCGTAAAGTTGGA 58.813 45.455 15.94 5.23 0.00 3.53
225 226 3.186909 TGCATCGATCGTAAAGTTGGAG 58.813 45.455 15.94 0.00 0.00 3.86
226 227 3.187700 GCATCGATCGTAAAGTTGGAGT 58.812 45.455 15.94 0.00 0.00 3.85
227 228 3.617263 GCATCGATCGTAAAGTTGGAGTT 59.383 43.478 15.94 0.00 0.00 3.01
228 229 4.492570 GCATCGATCGTAAAGTTGGAGTTG 60.493 45.833 15.94 0.00 0.00 3.16
229 230 3.581755 TCGATCGTAAAGTTGGAGTTGG 58.418 45.455 15.94 0.00 0.00 3.77
230 231 3.006110 TCGATCGTAAAGTTGGAGTTGGT 59.994 43.478 15.94 0.00 0.00 3.67
231 232 3.744426 CGATCGTAAAGTTGGAGTTGGTT 59.256 43.478 7.03 0.00 0.00 3.67
232 233 4.212636 CGATCGTAAAGTTGGAGTTGGTTT 59.787 41.667 7.03 0.00 0.00 3.27
233 234 5.277634 CGATCGTAAAGTTGGAGTTGGTTTT 60.278 40.000 7.03 0.00 0.00 2.43
234 235 5.900865 TCGTAAAGTTGGAGTTGGTTTTT 57.099 34.783 0.00 0.00 0.00 1.94
235 236 5.882553 TCGTAAAGTTGGAGTTGGTTTTTC 58.117 37.500 0.00 0.00 0.00 2.29
236 237 5.648960 TCGTAAAGTTGGAGTTGGTTTTTCT 59.351 36.000 0.00 0.00 0.00 2.52
237 238 6.151480 TCGTAAAGTTGGAGTTGGTTTTTCTT 59.849 34.615 0.00 0.00 0.00 2.52
238 239 6.471198 CGTAAAGTTGGAGTTGGTTTTTCTTC 59.529 38.462 0.00 0.00 0.00 2.87
239 240 5.339008 AAGTTGGAGTTGGTTTTTCTTCC 57.661 39.130 0.00 0.00 0.00 3.46
240 241 3.380320 AGTTGGAGTTGGTTTTTCTTCCG 59.620 43.478 0.00 0.00 0.00 4.30
241 242 3.007473 TGGAGTTGGTTTTTCTTCCGT 57.993 42.857 0.00 0.00 0.00 4.69
242 243 2.946990 TGGAGTTGGTTTTTCTTCCGTC 59.053 45.455 0.00 0.00 0.00 4.79
243 244 3.211865 GGAGTTGGTTTTTCTTCCGTCT 58.788 45.455 0.00 0.00 0.00 4.18
244 245 3.003378 GGAGTTGGTTTTTCTTCCGTCTG 59.997 47.826 0.00 0.00 0.00 3.51
245 246 2.357952 AGTTGGTTTTTCTTCCGTCTGC 59.642 45.455 0.00 0.00 0.00 4.26
246 247 2.045561 TGGTTTTTCTTCCGTCTGCA 57.954 45.000 0.00 0.00 0.00 4.41
247 248 2.370349 TGGTTTTTCTTCCGTCTGCAA 58.630 42.857 0.00 0.00 0.00 4.08
248 249 2.098443 TGGTTTTTCTTCCGTCTGCAAC 59.902 45.455 0.00 0.00 0.00 4.17
249 250 2.098443 GGTTTTTCTTCCGTCTGCAACA 59.902 45.455 0.00 0.00 0.00 3.33
250 251 3.428316 GGTTTTTCTTCCGTCTGCAACAA 60.428 43.478 0.00 0.00 0.00 2.83
251 252 4.170256 GTTTTTCTTCCGTCTGCAACAAA 58.830 39.130 0.00 0.00 0.00 2.83
252 253 4.442375 TTTTCTTCCGTCTGCAACAAAA 57.558 36.364 0.00 0.00 0.00 2.44
253 254 4.442375 TTTCTTCCGTCTGCAACAAAAA 57.558 36.364 0.00 0.00 0.00 1.94
254 255 3.691049 TCTTCCGTCTGCAACAAAAAG 57.309 42.857 0.00 0.00 0.00 2.27
255 256 2.119457 CTTCCGTCTGCAACAAAAAGC 58.881 47.619 0.00 0.00 0.00 3.51
256 257 1.388547 TCCGTCTGCAACAAAAAGCT 58.611 45.000 0.00 0.00 0.00 3.74
257 258 1.748493 TCCGTCTGCAACAAAAAGCTT 59.252 42.857 0.00 0.00 0.00 3.74
258 259 2.946329 TCCGTCTGCAACAAAAAGCTTA 59.054 40.909 0.00 0.00 0.00 3.09
259 260 3.568007 TCCGTCTGCAACAAAAAGCTTAT 59.432 39.130 0.00 0.00 0.00 1.73
260 261 3.914364 CCGTCTGCAACAAAAAGCTTATC 59.086 43.478 0.00 0.00 0.00 1.75
261 262 4.536065 CGTCTGCAACAAAAAGCTTATCA 58.464 39.130 0.00 0.00 0.00 2.15
262 263 4.975502 CGTCTGCAACAAAAAGCTTATCAA 59.024 37.500 0.00 0.00 0.00 2.57
263 264 5.630680 CGTCTGCAACAAAAAGCTTATCAAT 59.369 36.000 0.00 0.00 0.00 2.57
264 265 6.801377 CGTCTGCAACAAAAAGCTTATCAATA 59.199 34.615 0.00 0.00 0.00 1.90
265 266 7.485913 CGTCTGCAACAAAAAGCTTATCAATAT 59.514 33.333 0.00 0.00 0.00 1.28
266 267 9.787532 GTCTGCAACAAAAAGCTTATCAATATA 57.212 29.630 0.00 0.00 0.00 0.86
298 299 9.836864 ATAAGAATCTAATGCACATAGTGAACA 57.163 29.630 0.58 0.00 35.23 3.18
299 300 8.743085 AAGAATCTAATGCACATAGTGAACAT 57.257 30.769 0.58 0.00 35.23 2.71
300 301 8.151141 AGAATCTAATGCACATAGTGAACATG 57.849 34.615 0.58 0.00 35.23 3.21
301 302 6.872628 ATCTAATGCACATAGTGAACATGG 57.127 37.500 0.58 0.00 35.23 3.66
302 303 5.744171 TCTAATGCACATAGTGAACATGGT 58.256 37.500 0.58 0.00 35.23 3.55
303 304 6.179756 TCTAATGCACATAGTGAACATGGTT 58.820 36.000 0.58 0.00 35.23 3.67
304 305 7.334858 TCTAATGCACATAGTGAACATGGTTA 58.665 34.615 0.58 0.00 35.23 2.85
305 306 7.992608 TCTAATGCACATAGTGAACATGGTTAT 59.007 33.333 0.58 0.00 35.23 1.89
306 307 7.408756 AATGCACATAGTGAACATGGTTATT 57.591 32.000 0.58 0.00 35.23 1.40
307 308 6.435430 TGCACATAGTGAACATGGTTATTC 57.565 37.500 0.58 0.00 35.23 1.75
308 309 5.942826 TGCACATAGTGAACATGGTTATTCA 59.057 36.000 0.58 0.00 35.23 2.57
309 310 6.602803 TGCACATAGTGAACATGGTTATTCAT 59.397 34.615 0.58 0.00 37.19 2.57
310 311 7.122501 TGCACATAGTGAACATGGTTATTCATT 59.877 33.333 0.58 0.00 37.19 2.57
311 312 7.645340 GCACATAGTGAACATGGTTATTCATTC 59.355 37.037 0.58 0.00 37.19 2.67
312 313 8.896744 CACATAGTGAACATGGTTATTCATTCT 58.103 33.333 0.00 0.00 37.19 2.40
313 314 9.466497 ACATAGTGAACATGGTTATTCATTCTT 57.534 29.630 0.00 0.00 37.19 2.52
317 318 9.082313 AGTGAACATGGTTATTCATTCTTTTCT 57.918 29.630 0.00 0.00 37.19 2.52
318 319 9.696917 GTGAACATGGTTATTCATTCTTTTCTT 57.303 29.630 0.00 0.00 37.19 2.52
319 320 9.912634 TGAACATGGTTATTCATTCTTTTCTTC 57.087 29.630 0.00 0.00 29.89 2.87
322 323 9.525826 ACATGGTTATTCATTCTTTTCTTCTCT 57.474 29.630 0.00 0.00 0.00 3.10
325 326 9.354673 TGGTTATTCATTCTTTTCTTCTCTTGT 57.645 29.630 0.00 0.00 0.00 3.16
357 358 8.954350 AGGATGAGATACACATCTTTTTCTTTG 58.046 33.333 0.00 0.00 41.78 2.77
358 359 8.186821 GGATGAGATACACATCTTTTTCTTTGG 58.813 37.037 0.00 0.00 41.78 3.28
359 360 8.641498 ATGAGATACACATCTTTTTCTTTGGT 57.359 30.769 0.00 0.00 41.78 3.67
360 361 7.874940 TGAGATACACATCTTTTTCTTTGGTG 58.125 34.615 0.00 0.00 41.78 4.17
361 362 7.040478 TGAGATACACATCTTTTTCTTTGGTGG 60.040 37.037 0.00 0.00 41.78 4.61
362 363 4.058721 ACACATCTTTTTCTTTGGTGGC 57.941 40.909 0.00 0.00 0.00 5.01
363 364 3.450457 ACACATCTTTTTCTTTGGTGGCA 59.550 39.130 0.00 0.00 0.00 4.92
364 365 3.803778 CACATCTTTTTCTTTGGTGGCAC 59.196 43.478 9.70 9.70 0.00 5.01
365 366 3.450457 ACATCTTTTTCTTTGGTGGCACA 59.550 39.130 20.82 2.61 0.00 4.57
380 381 4.409718 TGGCACACTGTAGTAGTTTGAA 57.590 40.909 0.00 0.00 39.00 2.69
381 382 4.771903 TGGCACACTGTAGTAGTTTGAAA 58.228 39.130 0.00 0.00 39.00 2.69
382 383 4.814234 TGGCACACTGTAGTAGTTTGAAAG 59.186 41.667 0.00 0.00 39.00 2.62
383 384 5.054477 GGCACACTGTAGTAGTTTGAAAGA 58.946 41.667 0.00 0.00 39.00 2.52
384 385 5.526111 GGCACACTGTAGTAGTTTGAAAGAA 59.474 40.000 0.00 0.00 39.00 2.52
385 386 6.292919 GGCACACTGTAGTAGTTTGAAAGAAG 60.293 42.308 0.00 0.00 39.00 2.85
386 387 6.258068 GCACACTGTAGTAGTTTGAAAGAAGT 59.742 38.462 0.00 0.00 39.00 3.01
387 388 7.437267 GCACACTGTAGTAGTTTGAAAGAAGTA 59.563 37.037 0.00 0.00 39.00 2.24
388 389 9.309516 CACACTGTAGTAGTTTGAAAGAAGTAA 57.690 33.333 0.00 0.00 39.00 2.24
389 390 9.880157 ACACTGTAGTAGTTTGAAAGAAGTAAA 57.120 29.630 0.00 0.00 37.60 2.01
401 402 8.922738 TTGAAAGAAGTAAAATAGTAAACGCG 57.077 30.769 3.53 3.53 0.00 6.01
402 403 8.075593 TGAAAGAAGTAAAATAGTAAACGCGT 57.924 30.769 5.58 5.58 0.00 6.01
403 404 8.550376 TGAAAGAAGTAAAATAGTAAACGCGTT 58.450 29.630 20.79 20.79 0.00 4.84
404 405 8.703823 AAAGAAGTAAAATAGTAAACGCGTTG 57.296 30.769 27.34 0.00 0.00 4.10
405 406 7.642071 AGAAGTAAAATAGTAAACGCGTTGA 57.358 32.000 27.34 16.67 0.00 3.18
406 407 8.075593 AGAAGTAAAATAGTAAACGCGTTGAA 57.924 30.769 27.34 14.40 0.00 2.69
407 408 8.550376 AGAAGTAAAATAGTAAACGCGTTGAAA 58.450 29.630 27.34 11.62 0.00 2.69
408 409 8.479829 AAGTAAAATAGTAAACGCGTTGAAAC 57.520 30.769 27.34 22.32 0.00 2.78
409 410 7.629130 AGTAAAATAGTAAACGCGTTGAAACA 58.371 30.769 27.34 10.51 0.00 2.83
410 411 8.121708 AGTAAAATAGTAAACGCGTTGAAACAA 58.878 29.630 27.34 9.75 0.00 2.83
411 412 7.917720 AAAATAGTAAACGCGTTGAAACAAT 57.082 28.000 27.34 10.46 0.00 2.71
412 413 7.917720 AAATAGTAAACGCGTTGAAACAATT 57.082 28.000 27.34 16.59 0.00 2.32
413 414 9.448294 AAAATAGTAAACGCGTTGAAACAATTA 57.552 25.926 27.34 8.52 0.00 1.40
414 415 7.998081 ATAGTAAACGCGTTGAAACAATTAC 57.002 32.000 27.34 19.88 0.00 1.89
415 416 5.808403 AGTAAACGCGTTGAAACAATTACA 58.192 33.333 27.34 0.00 0.00 2.41
416 417 6.432107 AGTAAACGCGTTGAAACAATTACAT 58.568 32.000 27.34 7.25 0.00 2.29
417 418 6.913673 AGTAAACGCGTTGAAACAATTACATT 59.086 30.769 27.34 6.77 0.00 2.71
418 419 5.553692 AACGCGTTGAAACAATTACATTG 57.446 34.783 26.00 0.00 45.59 2.82
419 420 4.849883 ACGCGTTGAAACAATTACATTGA 58.150 34.783 5.58 0.00 42.83 2.57
420 421 5.457140 ACGCGTTGAAACAATTACATTGAT 58.543 33.333 5.58 0.00 42.83 2.57
421 422 5.341993 ACGCGTTGAAACAATTACATTGATG 59.658 36.000 5.58 0.00 42.83 3.07
422 423 5.341993 CGCGTTGAAACAATTACATTGATGT 59.658 36.000 0.00 1.84 42.83 3.06
423 424 6.521477 CGCGTTGAAACAATTACATTGATGTA 59.479 34.615 0.00 0.00 42.83 2.29
435 436 7.770801 TTACATTGATGTAATCTCGGACTTG 57.229 36.000 11.48 0.00 45.41 3.16
436 437 5.977635 ACATTGATGTAATCTCGGACTTGA 58.022 37.500 0.00 0.00 45.81 3.02
437 438 6.406370 ACATTGATGTAATCTCGGACTTGAA 58.594 36.000 0.00 0.00 45.81 2.69
438 439 6.536582 ACATTGATGTAATCTCGGACTTGAAG 59.463 38.462 0.00 0.00 45.81 3.02
439 440 5.914898 TGATGTAATCTCGGACTTGAAGA 57.085 39.130 0.00 0.00 45.81 2.87
440 441 6.280855 TGATGTAATCTCGGACTTGAAGAA 57.719 37.500 0.00 0.00 45.81 2.52
441 442 6.878317 TGATGTAATCTCGGACTTGAAGAAT 58.122 36.000 0.00 0.00 45.81 2.40
442 443 8.007405 TGATGTAATCTCGGACTTGAAGAATA 57.993 34.615 0.00 0.00 45.81 1.75
443 444 8.474831 TGATGTAATCTCGGACTTGAAGAATAA 58.525 33.333 0.00 0.00 45.81 1.40
444 445 9.314321 GATGTAATCTCGGACTTGAAGAATAAA 57.686 33.333 0.00 0.00 41.17 1.40
445 446 8.475331 TGTAATCTCGGACTTGAAGAATAAAC 57.525 34.615 0.00 0.00 0.00 2.01
446 447 8.311836 TGTAATCTCGGACTTGAAGAATAAACT 58.688 33.333 0.00 0.00 0.00 2.66
447 448 9.798994 GTAATCTCGGACTTGAAGAATAAACTA 57.201 33.333 0.00 0.00 0.00 2.24
448 449 8.705048 AATCTCGGACTTGAAGAATAAACTAC 57.295 34.615 0.00 0.00 0.00 2.73
449 450 6.320171 TCTCGGACTTGAAGAATAAACTACG 58.680 40.000 0.00 0.00 0.00 3.51
450 451 6.017400 TCGGACTTGAAGAATAAACTACGT 57.983 37.500 0.00 0.00 0.00 3.57
451 452 7.119699 TCTCGGACTTGAAGAATAAACTACGTA 59.880 37.037 0.00 0.00 0.00 3.57
452 453 7.023575 TCGGACTTGAAGAATAAACTACGTAC 58.976 38.462 0.00 0.00 0.00 3.67
453 454 7.025963 CGGACTTGAAGAATAAACTACGTACT 58.974 38.462 0.00 0.00 0.00 2.73
454 455 7.217825 CGGACTTGAAGAATAAACTACGTACTC 59.782 40.741 0.00 0.00 0.00 2.59
455 456 7.217825 GGACTTGAAGAATAAACTACGTACTCG 59.782 40.741 0.00 0.00 43.34 4.18
456 457 7.810658 ACTTGAAGAATAAACTACGTACTCGA 58.189 34.615 0.00 0.00 40.62 4.04
457 458 8.292448 ACTTGAAGAATAAACTACGTACTCGAA 58.708 33.333 0.00 0.00 40.62 3.71
458 459 9.286946 CTTGAAGAATAAACTACGTACTCGAAT 57.713 33.333 0.00 0.00 40.62 3.34
469 470 8.332777 ACTACGTACTCGAATAACTAAATTGC 57.667 34.615 0.00 0.00 40.62 3.56
470 471 6.252036 ACGTACTCGAATAACTAAATTGCG 57.748 37.500 0.00 0.00 40.62 4.85
471 472 5.801947 ACGTACTCGAATAACTAAATTGCGT 59.198 36.000 0.00 0.00 40.62 5.24
472 473 6.308766 ACGTACTCGAATAACTAAATTGCGTT 59.691 34.615 0.00 0.00 40.62 4.84
473 474 6.618308 CGTACTCGAATAACTAAATTGCGTTG 59.382 38.462 3.59 0.00 39.71 4.10
474 475 6.476243 ACTCGAATAACTAAATTGCGTTGT 57.524 33.333 3.59 0.00 0.00 3.32
475 476 7.585286 ACTCGAATAACTAAATTGCGTTGTA 57.415 32.000 3.59 0.00 0.00 2.41
476 477 7.672738 ACTCGAATAACTAAATTGCGTTGTAG 58.327 34.615 3.59 0.00 0.00 2.74
477 478 6.996106 TCGAATAACTAAATTGCGTTGTAGG 58.004 36.000 3.59 0.00 0.00 3.18
478 479 6.036300 TCGAATAACTAAATTGCGTTGTAGGG 59.964 38.462 3.59 0.00 0.00 3.53
479 480 6.036300 CGAATAACTAAATTGCGTTGTAGGGA 59.964 38.462 3.59 0.00 0.00 4.20
480 481 7.413219 CGAATAACTAAATTGCGTTGTAGGGAA 60.413 37.037 3.59 0.00 0.00 3.97
481 482 5.622770 AACTAAATTGCGTTGTAGGGAAG 57.377 39.130 0.00 0.00 0.00 3.46
482 483 4.901868 ACTAAATTGCGTTGTAGGGAAGA 58.098 39.130 0.00 0.00 0.00 2.87
483 484 5.310451 ACTAAATTGCGTTGTAGGGAAGAA 58.690 37.500 0.00 0.00 0.00 2.52
484 485 5.766174 ACTAAATTGCGTTGTAGGGAAGAAA 59.234 36.000 0.00 0.00 0.00 2.52
485 486 5.523438 AAATTGCGTTGTAGGGAAGAAAA 57.477 34.783 0.00 0.00 0.00 2.29
486 487 3.974871 TTGCGTTGTAGGGAAGAAAAC 57.025 42.857 0.00 0.00 0.00 2.43
487 488 2.920524 TGCGTTGTAGGGAAGAAAACA 58.079 42.857 0.00 0.00 0.00 2.83
488 489 3.280295 TGCGTTGTAGGGAAGAAAACAA 58.720 40.909 0.00 0.00 0.00 2.83
489 490 3.314080 TGCGTTGTAGGGAAGAAAACAAG 59.686 43.478 0.00 0.00 32.83 3.16
490 491 3.562557 GCGTTGTAGGGAAGAAAACAAGA 59.437 43.478 0.00 0.00 32.83 3.02
491 492 4.319549 GCGTTGTAGGGAAGAAAACAAGAG 60.320 45.833 0.00 0.00 32.83 2.85
492 493 4.213482 CGTTGTAGGGAAGAAAACAAGAGG 59.787 45.833 0.00 0.00 32.83 3.69
493 494 5.374071 GTTGTAGGGAAGAAAACAAGAGGA 58.626 41.667 0.00 0.00 32.83 3.71
494 495 4.969484 TGTAGGGAAGAAAACAAGAGGAC 58.031 43.478 0.00 0.00 0.00 3.85
495 496 3.127425 AGGGAAGAAAACAAGAGGACG 57.873 47.619 0.00 0.00 0.00 4.79
496 497 2.704065 AGGGAAGAAAACAAGAGGACGA 59.296 45.455 0.00 0.00 0.00 4.20
497 498 3.135895 AGGGAAGAAAACAAGAGGACGAA 59.864 43.478 0.00 0.00 0.00 3.85
498 499 3.250280 GGGAAGAAAACAAGAGGACGAAC 59.750 47.826 0.00 0.00 0.00 3.95
499 500 4.127907 GGAAGAAAACAAGAGGACGAACT 58.872 43.478 0.00 0.00 0.00 3.01
500 501 4.211584 GGAAGAAAACAAGAGGACGAACTC 59.788 45.833 0.00 0.00 37.77 3.01
501 502 4.402056 AGAAAACAAGAGGACGAACTCA 57.598 40.909 12.26 0.00 39.97 3.41
502 503 4.766375 AGAAAACAAGAGGACGAACTCAA 58.234 39.130 12.26 0.00 39.97 3.02
503 504 5.183228 AGAAAACAAGAGGACGAACTCAAA 58.817 37.500 12.26 0.00 39.97 2.69
504 505 4.877323 AAACAAGAGGACGAACTCAAAC 57.123 40.909 12.26 0.00 39.97 2.93
505 506 2.470821 ACAAGAGGACGAACTCAAACG 58.529 47.619 12.26 0.00 39.97 3.60
506 507 1.792949 CAAGAGGACGAACTCAAACGG 59.207 52.381 12.26 0.00 39.97 4.44
507 508 1.325355 AGAGGACGAACTCAAACGGA 58.675 50.000 12.26 0.00 39.97 4.69
508 509 1.893801 AGAGGACGAACTCAAACGGAT 59.106 47.619 12.26 0.00 39.97 4.18
509 510 2.299297 AGAGGACGAACTCAAACGGATT 59.701 45.455 12.26 0.00 39.97 3.01
510 511 2.412089 GAGGACGAACTCAAACGGATTG 59.588 50.000 0.00 0.00 40.58 2.67
511 512 2.036733 AGGACGAACTCAAACGGATTGA 59.963 45.455 0.65 0.65 45.71 2.57
512 513 3.000727 GGACGAACTCAAACGGATTGAT 58.999 45.455 0.95 0.00 46.62 2.57
513 514 3.062234 GGACGAACTCAAACGGATTGATC 59.938 47.826 0.95 0.00 46.62 2.92
514 515 3.000727 ACGAACTCAAACGGATTGATCC 58.999 45.455 0.95 0.00 46.62 3.36
515 516 3.000041 CGAACTCAAACGGATTGATCCA 59.000 45.455 10.45 0.00 46.62 3.41
516 517 3.435327 CGAACTCAAACGGATTGATCCAA 59.565 43.478 10.45 0.00 46.62 3.53
517 518 4.094887 CGAACTCAAACGGATTGATCCAAT 59.905 41.667 10.45 0.00 46.62 3.16
518 519 5.567138 AACTCAAACGGATTGATCCAATC 57.433 39.130 10.45 10.34 46.62 2.67
527 528 3.836146 GATTGATCCAATCCACCATCCA 58.164 45.455 8.13 0.00 42.90 3.41
528 529 3.977489 TTGATCCAATCCACCATCCAT 57.023 42.857 0.00 0.00 0.00 3.41
529 530 3.232720 TGATCCAATCCACCATCCATG 57.767 47.619 0.00 0.00 0.00 3.66
530 531 1.891150 GATCCAATCCACCATCCATGC 59.109 52.381 0.00 0.00 0.00 4.06
531 532 0.928505 TCCAATCCACCATCCATGCT 59.071 50.000 0.00 0.00 0.00 3.79
532 533 1.288633 TCCAATCCACCATCCATGCTT 59.711 47.619 0.00 0.00 0.00 3.91
533 534 2.112998 CCAATCCACCATCCATGCTTT 58.887 47.619 0.00 0.00 0.00 3.51
534 535 2.502538 CCAATCCACCATCCATGCTTTT 59.497 45.455 0.00 0.00 0.00 2.27
535 536 3.054948 CCAATCCACCATCCATGCTTTTT 60.055 43.478 0.00 0.00 0.00 1.94
536 537 3.899052 ATCCACCATCCATGCTTTTTG 57.101 42.857 0.00 0.00 0.00 2.44
537 538 1.275856 TCCACCATCCATGCTTTTTGC 59.724 47.619 0.00 0.00 43.25 3.68
538 539 1.352114 CACCATCCATGCTTTTTGCG 58.648 50.000 0.00 0.00 46.63 4.85
539 540 1.067706 CACCATCCATGCTTTTTGCGA 60.068 47.619 0.00 0.00 46.63 5.10
540 541 1.826720 ACCATCCATGCTTTTTGCGAT 59.173 42.857 0.00 0.00 46.63 4.58
541 542 2.159198 ACCATCCATGCTTTTTGCGATC 60.159 45.455 0.00 0.00 46.63 3.69
542 543 2.159212 CCATCCATGCTTTTTGCGATCA 60.159 45.455 0.00 0.00 46.63 2.92
543 544 2.634982 TCCATGCTTTTTGCGATCAC 57.365 45.000 0.00 0.00 46.63 3.06
544 545 1.202114 TCCATGCTTTTTGCGATCACC 59.798 47.619 0.00 0.00 46.63 4.02
545 546 1.632422 CATGCTTTTTGCGATCACCC 58.368 50.000 0.00 0.00 46.63 4.61
546 547 1.203052 CATGCTTTTTGCGATCACCCT 59.797 47.619 0.00 0.00 46.63 4.34
547 548 0.597568 TGCTTTTTGCGATCACCCTG 59.402 50.000 0.00 0.00 46.63 4.45
548 549 0.881118 GCTTTTTGCGATCACCCTGA 59.119 50.000 0.00 0.00 0.00 3.86
549 550 1.401539 GCTTTTTGCGATCACCCTGAC 60.402 52.381 0.00 0.00 0.00 3.51
550 551 1.200020 CTTTTTGCGATCACCCTGACC 59.800 52.381 0.00 0.00 0.00 4.02
551 552 0.400213 TTTTGCGATCACCCTGACCT 59.600 50.000 0.00 0.00 0.00 3.85
552 553 0.400213 TTTGCGATCACCCTGACCTT 59.600 50.000 0.00 0.00 0.00 3.50
553 554 0.321564 TTGCGATCACCCTGACCTTG 60.322 55.000 0.00 0.00 0.00 3.61
554 555 2.109126 GCGATCACCCTGACCTTGC 61.109 63.158 0.00 0.00 0.00 4.01
555 556 1.599047 CGATCACCCTGACCTTGCT 59.401 57.895 0.00 0.00 0.00 3.91
556 557 0.824109 CGATCACCCTGACCTTGCTA 59.176 55.000 0.00 0.00 0.00 3.49
557 558 1.414181 CGATCACCCTGACCTTGCTAT 59.586 52.381 0.00 0.00 0.00 2.97
558 559 2.804572 CGATCACCCTGACCTTGCTATG 60.805 54.545 0.00 0.00 0.00 2.23
1209 1211 2.994387 CTAGGATTCATGCGCCGCCA 62.994 60.000 6.63 0.00 0.00 5.69
1800 1804 1.200020 GATGTTGGGCCGTGAGAAAAG 59.800 52.381 0.00 0.00 0.00 2.27
2176 2183 2.033602 GTGTAGCAACCCGGGCTT 59.966 61.111 24.08 11.77 42.62 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.273327 GACATGCCCACTTCCTTTTGG 59.727 52.381 0.00 0.00 42.21 3.28
14 15 2.029649 CAGACATGCCCACTTCCTTTTG 60.030 50.000 0.00 0.00 0.00 2.44
15 16 2.242043 CAGACATGCCCACTTCCTTTT 58.758 47.619 0.00 0.00 0.00 2.27
16 17 1.548582 CCAGACATGCCCACTTCCTTT 60.549 52.381 0.00 0.00 0.00 3.11
17 18 0.038744 CCAGACATGCCCACTTCCTT 59.961 55.000 0.00 0.00 0.00 3.36
18 19 1.687612 CCAGACATGCCCACTTCCT 59.312 57.895 0.00 0.00 0.00 3.36
19 20 1.379044 CCCAGACATGCCCACTTCC 60.379 63.158 0.00 0.00 0.00 3.46
20 21 0.257039 ATCCCAGACATGCCCACTTC 59.743 55.000 0.00 0.00 0.00 3.01
21 22 0.033796 CATCCCAGACATGCCCACTT 60.034 55.000 0.00 0.00 0.00 3.16
22 23 0.915872 TCATCCCAGACATGCCCACT 60.916 55.000 0.00 0.00 0.00 4.00
23 24 0.184451 ATCATCCCAGACATGCCCAC 59.816 55.000 0.00 0.00 0.00 4.61
24 25 1.701292 CTATCATCCCAGACATGCCCA 59.299 52.381 0.00 0.00 0.00 5.36
25 26 1.612726 GCTATCATCCCAGACATGCCC 60.613 57.143 0.00 0.00 0.00 5.36
26 27 1.350351 AGCTATCATCCCAGACATGCC 59.650 52.381 0.00 0.00 0.00 4.40
27 28 2.302445 AGAGCTATCATCCCAGACATGC 59.698 50.000 0.00 0.00 0.00 4.06
28 29 5.187381 ACATAGAGCTATCATCCCAGACATG 59.813 44.000 0.00 0.00 0.00 3.21
29 30 5.187381 CACATAGAGCTATCATCCCAGACAT 59.813 44.000 0.00 0.00 0.00 3.06
30 31 4.525874 CACATAGAGCTATCATCCCAGACA 59.474 45.833 0.00 0.00 0.00 3.41
31 32 4.769488 TCACATAGAGCTATCATCCCAGAC 59.231 45.833 0.00 0.00 0.00 3.51
32 33 5.003096 TCACATAGAGCTATCATCCCAGA 57.997 43.478 0.00 0.00 0.00 3.86
33 34 5.015515 TCTCACATAGAGCTATCATCCCAG 58.984 45.833 0.00 0.00 44.35 4.45
34 35 5.003096 TCTCACATAGAGCTATCATCCCA 57.997 43.478 0.00 0.00 44.35 4.37
35 36 5.655974 TGATCTCACATAGAGCTATCATCCC 59.344 44.000 0.00 0.00 44.35 3.85
36 37 6.563422 GTGATCTCACATAGAGCTATCATCC 58.437 44.000 5.46 0.00 45.75 3.51
51 52 2.062971 ATGCCCCAATGTGATCTCAC 57.937 50.000 0.00 3.34 46.59 3.51
52 53 3.949586 TTATGCCCCAATGTGATCTCA 57.050 42.857 0.00 0.00 0.00 3.27
53 54 7.363268 GGAATTATTATGCCCCAATGTGATCTC 60.363 40.741 0.00 0.00 0.00 2.75
54 55 6.438425 GGAATTATTATGCCCCAATGTGATCT 59.562 38.462 0.00 0.00 0.00 2.75
55 56 6.211184 TGGAATTATTATGCCCCAATGTGATC 59.789 38.462 0.00 0.00 0.00 2.92
56 57 6.083383 TGGAATTATTATGCCCCAATGTGAT 58.917 36.000 0.00 0.00 0.00 3.06
57 58 5.462240 TGGAATTATTATGCCCCAATGTGA 58.538 37.500 0.00 0.00 0.00 3.58
58 59 5.804944 TGGAATTATTATGCCCCAATGTG 57.195 39.130 0.00 0.00 0.00 3.21
59 60 7.391388 AATTGGAATTATTATGCCCCAATGT 57.609 32.000 8.11 0.00 41.82 2.71
60 61 8.569641 CAAAATTGGAATTATTATGCCCCAATG 58.430 33.333 8.11 0.00 41.82 2.82
61 62 7.231115 GCAAAATTGGAATTATTATGCCCCAAT 59.769 33.333 0.00 0.00 43.76 3.16
62 63 6.545298 GCAAAATTGGAATTATTATGCCCCAA 59.455 34.615 0.00 0.00 37.96 4.12
63 64 6.060788 GCAAAATTGGAATTATTATGCCCCA 58.939 36.000 0.00 0.00 0.00 4.96
64 65 6.060788 TGCAAAATTGGAATTATTATGCCCC 58.939 36.000 0.00 0.00 0.00 5.80
65 66 7.565323 TTGCAAAATTGGAATTATTATGCCC 57.435 32.000 0.00 0.00 33.44 5.36
91 92 9.733556 TGGTTACAGAAGTCACACATAAATTAT 57.266 29.630 0.00 0.00 0.00 1.28
92 93 9.562408 TTGGTTACAGAAGTCACACATAAATTA 57.438 29.630 0.00 0.00 0.00 1.40
93 94 8.458573 TTGGTTACAGAAGTCACACATAAATT 57.541 30.769 0.00 0.00 0.00 1.82
94 95 8.458573 TTTGGTTACAGAAGTCACACATAAAT 57.541 30.769 0.00 0.00 0.00 1.40
95 96 7.867305 TTTGGTTACAGAAGTCACACATAAA 57.133 32.000 0.00 0.00 0.00 1.40
96 97 7.500892 ACATTTGGTTACAGAAGTCACACATAA 59.499 33.333 0.00 0.00 0.00 1.90
97 98 6.995686 ACATTTGGTTACAGAAGTCACACATA 59.004 34.615 0.00 0.00 0.00 2.29
98 99 5.827797 ACATTTGGTTACAGAAGTCACACAT 59.172 36.000 0.00 0.00 0.00 3.21
99 100 5.189928 ACATTTGGTTACAGAAGTCACACA 58.810 37.500 0.00 0.00 0.00 3.72
100 101 5.751243 ACATTTGGTTACAGAAGTCACAC 57.249 39.130 0.00 0.00 0.00 3.82
101 102 7.867305 TTAACATTTGGTTACAGAAGTCACA 57.133 32.000 0.00 0.00 41.55 3.58
102 103 9.744468 AATTTAACATTTGGTTACAGAAGTCAC 57.256 29.630 0.00 0.00 41.55 3.67
127 128 8.912988 GGATACCATGAATTCAGGATGTTTTAA 58.087 33.333 21.14 0.00 37.40 1.52
128 129 8.463930 GGATACCATGAATTCAGGATGTTTTA 57.536 34.615 21.14 6.84 37.40 1.52
129 130 7.352079 GGATACCATGAATTCAGGATGTTTT 57.648 36.000 21.14 3.61 37.40 2.43
130 131 6.966534 GGATACCATGAATTCAGGATGTTT 57.033 37.500 21.14 6.88 37.40 2.83
150 151 9.620259 GTCTAATTTTCTTTAGTGAGATGGGAT 57.380 33.333 0.00 0.00 32.21 3.85
151 152 8.602424 TGTCTAATTTTCTTTAGTGAGATGGGA 58.398 33.333 0.00 0.00 32.21 4.37
152 153 8.792830 TGTCTAATTTTCTTTAGTGAGATGGG 57.207 34.615 0.00 0.00 32.21 4.00
158 159 9.621629 TGTCCTTTGTCTAATTTTCTTTAGTGA 57.378 29.630 0.00 0.00 32.21 3.41
159 160 9.884465 CTGTCCTTTGTCTAATTTTCTTTAGTG 57.116 33.333 0.00 0.00 32.21 2.74
160 161 9.847224 TCTGTCCTTTGTCTAATTTTCTTTAGT 57.153 29.630 0.00 0.00 32.21 2.24
162 163 9.847224 ACTCTGTCCTTTGTCTAATTTTCTTTA 57.153 29.630 0.00 0.00 0.00 1.85
163 164 8.753497 ACTCTGTCCTTTGTCTAATTTTCTTT 57.247 30.769 0.00 0.00 0.00 2.52
164 165 8.753497 AACTCTGTCCTTTGTCTAATTTTCTT 57.247 30.769 0.00 0.00 0.00 2.52
165 166 8.753497 AAACTCTGTCCTTTGTCTAATTTTCT 57.247 30.769 0.00 0.00 0.00 2.52
168 169 9.847224 TCTTAAACTCTGTCCTTTGTCTAATTT 57.153 29.630 0.00 0.00 0.00 1.82
169 170 9.847224 TTCTTAAACTCTGTCCTTTGTCTAATT 57.153 29.630 0.00 0.00 0.00 1.40
170 171 9.495572 CTTCTTAAACTCTGTCCTTTGTCTAAT 57.504 33.333 0.00 0.00 0.00 1.73
171 172 7.441458 GCTTCTTAAACTCTGTCCTTTGTCTAA 59.559 37.037 0.00 0.00 0.00 2.10
172 173 6.929606 GCTTCTTAAACTCTGTCCTTTGTCTA 59.070 38.462 0.00 0.00 0.00 2.59
173 174 5.760743 GCTTCTTAAACTCTGTCCTTTGTCT 59.239 40.000 0.00 0.00 0.00 3.41
174 175 5.527582 TGCTTCTTAAACTCTGTCCTTTGTC 59.472 40.000 0.00 0.00 0.00 3.18
175 176 5.437060 TGCTTCTTAAACTCTGTCCTTTGT 58.563 37.500 0.00 0.00 0.00 2.83
176 177 6.566197 ATGCTTCTTAAACTCTGTCCTTTG 57.434 37.500 0.00 0.00 0.00 2.77
177 178 7.175119 GGTAATGCTTCTTAAACTCTGTCCTTT 59.825 37.037 0.00 0.00 0.00 3.11
178 179 6.655425 GGTAATGCTTCTTAAACTCTGTCCTT 59.345 38.462 0.00 0.00 0.00 3.36
179 180 6.013293 AGGTAATGCTTCTTAAACTCTGTCCT 60.013 38.462 0.00 0.00 0.00 3.85
180 181 6.092807 CAGGTAATGCTTCTTAAACTCTGTCC 59.907 42.308 0.00 0.00 0.00 4.02
181 182 7.066374 CAGGTAATGCTTCTTAAACTCTGTC 57.934 40.000 0.00 0.00 0.00 3.51
197 198 4.745125 ACTTTACGATCGATGCAGGTAATG 59.255 41.667 24.34 11.93 0.00 1.90
198 199 4.945246 ACTTTACGATCGATGCAGGTAAT 58.055 39.130 24.34 0.00 0.00 1.89
199 200 4.380841 ACTTTACGATCGATGCAGGTAA 57.619 40.909 24.34 5.01 0.00 2.85
200 201 4.109766 CAACTTTACGATCGATGCAGGTA 58.890 43.478 24.34 0.00 0.00 3.08
201 202 2.930040 CAACTTTACGATCGATGCAGGT 59.070 45.455 24.34 7.58 0.00 4.00
202 203 2.285220 CCAACTTTACGATCGATGCAGG 59.715 50.000 24.34 10.39 0.00 4.85
203 204 3.186909 TCCAACTTTACGATCGATGCAG 58.813 45.455 24.34 13.62 0.00 4.41
204 205 3.186909 CTCCAACTTTACGATCGATGCA 58.813 45.455 24.34 0.41 0.00 3.96
205 206 3.187700 ACTCCAACTTTACGATCGATGC 58.812 45.455 24.34 0.00 0.00 3.91
206 207 4.032900 CCAACTCCAACTTTACGATCGATG 59.967 45.833 24.34 10.61 0.00 3.84
207 208 4.181578 CCAACTCCAACTTTACGATCGAT 58.818 43.478 24.34 8.79 0.00 3.59
208 209 3.006110 ACCAACTCCAACTTTACGATCGA 59.994 43.478 24.34 2.23 0.00 3.59
209 210 3.323243 ACCAACTCCAACTTTACGATCG 58.677 45.455 14.88 14.88 0.00 3.69
210 211 5.684550 AAACCAACTCCAACTTTACGATC 57.315 39.130 0.00 0.00 0.00 3.69
211 212 6.320418 AGAAAAACCAACTCCAACTTTACGAT 59.680 34.615 0.00 0.00 0.00 3.73
212 213 5.648960 AGAAAAACCAACTCCAACTTTACGA 59.351 36.000 0.00 0.00 0.00 3.43
213 214 5.886992 AGAAAAACCAACTCCAACTTTACG 58.113 37.500 0.00 0.00 0.00 3.18
214 215 6.755141 GGAAGAAAAACCAACTCCAACTTTAC 59.245 38.462 0.00 0.00 0.00 2.01
215 216 6.404954 CGGAAGAAAAACCAACTCCAACTTTA 60.405 38.462 0.00 0.00 0.00 1.85
216 217 5.623596 CGGAAGAAAAACCAACTCCAACTTT 60.624 40.000 0.00 0.00 0.00 2.66
217 218 4.142249 CGGAAGAAAAACCAACTCCAACTT 60.142 41.667 0.00 0.00 0.00 2.66
218 219 3.380320 CGGAAGAAAAACCAACTCCAACT 59.620 43.478 0.00 0.00 0.00 3.16
219 220 3.129813 ACGGAAGAAAAACCAACTCCAAC 59.870 43.478 0.00 0.00 0.00 3.77
220 221 3.358118 ACGGAAGAAAAACCAACTCCAA 58.642 40.909 0.00 0.00 0.00 3.53
221 222 2.946990 GACGGAAGAAAAACCAACTCCA 59.053 45.455 0.00 0.00 0.00 3.86
222 223 3.003378 CAGACGGAAGAAAAACCAACTCC 59.997 47.826 0.00 0.00 0.00 3.85
223 224 3.548214 GCAGACGGAAGAAAAACCAACTC 60.548 47.826 0.00 0.00 0.00 3.01
224 225 2.357952 GCAGACGGAAGAAAAACCAACT 59.642 45.455 0.00 0.00 0.00 3.16
225 226 2.098443 TGCAGACGGAAGAAAAACCAAC 59.902 45.455 0.00 0.00 0.00 3.77
226 227 2.370349 TGCAGACGGAAGAAAAACCAA 58.630 42.857 0.00 0.00 0.00 3.67
227 228 2.045561 TGCAGACGGAAGAAAAACCA 57.954 45.000 0.00 0.00 0.00 3.67
228 229 2.098443 TGTTGCAGACGGAAGAAAAACC 59.902 45.455 0.00 0.00 0.00 3.27
229 230 3.414549 TGTTGCAGACGGAAGAAAAAC 57.585 42.857 0.00 0.00 0.00 2.43
230 231 4.442375 TTTGTTGCAGACGGAAGAAAAA 57.558 36.364 0.00 0.00 33.67 1.94
231 232 4.442375 TTTTGTTGCAGACGGAAGAAAA 57.558 36.364 0.00 0.00 41.35 2.29
232 233 4.420168 CTTTTTGTTGCAGACGGAAGAAA 58.580 39.130 0.00 0.00 34.57 2.52
233 234 3.733684 GCTTTTTGTTGCAGACGGAAGAA 60.734 43.478 5.68 0.00 0.00 2.52
234 235 2.223479 GCTTTTTGTTGCAGACGGAAGA 60.223 45.455 5.68 0.00 0.00 2.87
235 236 2.119457 GCTTTTTGTTGCAGACGGAAG 58.881 47.619 0.00 0.00 0.00 3.46
236 237 1.748493 AGCTTTTTGTTGCAGACGGAA 59.252 42.857 0.00 0.00 0.00 4.30
237 238 1.388547 AGCTTTTTGTTGCAGACGGA 58.611 45.000 0.00 0.00 0.00 4.69
238 239 2.208326 AAGCTTTTTGTTGCAGACGG 57.792 45.000 0.00 0.00 0.00 4.79
239 240 4.536065 TGATAAGCTTTTTGTTGCAGACG 58.464 39.130 3.20 0.00 0.00 4.18
240 241 8.693542 ATATTGATAAGCTTTTTGTTGCAGAC 57.306 30.769 3.20 0.00 0.00 3.51
272 273 9.836864 TGTTCACTATGTGCATTAGATTCTTAT 57.163 29.630 12.17 0.00 32.98 1.73
273 274 9.836864 ATGTTCACTATGTGCATTAGATTCTTA 57.163 29.630 12.17 0.00 32.98 2.10
274 275 8.618677 CATGTTCACTATGTGCATTAGATTCTT 58.381 33.333 12.17 0.00 32.98 2.52
275 276 7.228108 CCATGTTCACTATGTGCATTAGATTCT 59.772 37.037 12.17 0.00 32.98 2.40
276 277 7.012704 ACCATGTTCACTATGTGCATTAGATTC 59.987 37.037 12.17 3.04 32.98 2.52
277 278 6.830324 ACCATGTTCACTATGTGCATTAGATT 59.170 34.615 12.17 0.00 32.98 2.40
278 279 6.359804 ACCATGTTCACTATGTGCATTAGAT 58.640 36.000 12.17 0.00 32.98 1.98
279 280 5.744171 ACCATGTTCACTATGTGCATTAGA 58.256 37.500 12.17 0.00 32.98 2.10
280 281 6.441093 AACCATGTTCACTATGTGCATTAG 57.559 37.500 0.00 0.00 32.98 1.73
281 282 8.518430 AATAACCATGTTCACTATGTGCATTA 57.482 30.769 0.00 0.00 32.98 1.90
282 283 7.122501 TGAATAACCATGTTCACTATGTGCATT 59.877 33.333 0.00 0.00 32.48 3.56
283 284 6.602803 TGAATAACCATGTTCACTATGTGCAT 59.397 34.615 0.00 0.00 32.48 3.96
284 285 5.942826 TGAATAACCATGTTCACTATGTGCA 59.057 36.000 0.00 0.00 32.48 4.57
285 286 6.435430 TGAATAACCATGTTCACTATGTGC 57.565 37.500 0.00 0.00 32.48 4.57
286 287 8.896744 AGAATGAATAACCATGTTCACTATGTG 58.103 33.333 0.00 0.00 39.15 3.21
287 288 9.466497 AAGAATGAATAACCATGTTCACTATGT 57.534 29.630 0.00 0.00 39.15 2.29
291 292 9.082313 AGAAAAGAATGAATAACCATGTTCACT 57.918 29.630 0.00 0.00 39.15 3.41
292 293 9.696917 AAGAAAAGAATGAATAACCATGTTCAC 57.303 29.630 0.00 0.00 39.15 3.18
293 294 9.912634 GAAGAAAAGAATGAATAACCATGTTCA 57.087 29.630 0.00 0.00 40.37 3.18
296 297 9.525826 AGAGAAGAAAAGAATGAATAACCATGT 57.474 29.630 0.00 0.00 0.00 3.21
299 300 9.354673 ACAAGAGAAGAAAAGAATGAATAACCA 57.645 29.630 0.00 0.00 0.00 3.67
331 332 8.954350 CAAAGAAAAAGATGTGTATCTCATCCT 58.046 33.333 7.78 0.00 42.80 3.24
332 333 8.186821 CCAAAGAAAAAGATGTGTATCTCATCC 58.813 37.037 7.78 0.00 42.80 3.51
333 334 8.734386 ACCAAAGAAAAAGATGTGTATCTCATC 58.266 33.333 0.00 0.00 42.80 2.92
334 335 8.517878 CACCAAAGAAAAAGATGTGTATCTCAT 58.482 33.333 0.00 0.00 42.80 2.90
335 336 7.040478 CCACCAAAGAAAAAGATGTGTATCTCA 60.040 37.037 0.00 0.00 42.80 3.27
336 337 7.308435 CCACCAAAGAAAAAGATGTGTATCTC 58.692 38.462 0.00 0.00 42.80 2.75
337 338 6.294731 GCCACCAAAGAAAAAGATGTGTATCT 60.295 38.462 0.00 0.00 45.51 1.98
338 339 5.863935 GCCACCAAAGAAAAAGATGTGTATC 59.136 40.000 0.00 0.00 0.00 2.24
339 340 5.304101 TGCCACCAAAGAAAAAGATGTGTAT 59.696 36.000 0.00 0.00 0.00 2.29
340 341 4.646945 TGCCACCAAAGAAAAAGATGTGTA 59.353 37.500 0.00 0.00 0.00 2.90
341 342 3.450457 TGCCACCAAAGAAAAAGATGTGT 59.550 39.130 0.00 0.00 0.00 3.72
342 343 3.803778 GTGCCACCAAAGAAAAAGATGTG 59.196 43.478 0.00 0.00 0.00 3.21
343 344 3.450457 TGTGCCACCAAAGAAAAAGATGT 59.550 39.130 0.00 0.00 0.00 3.06
344 345 3.803778 GTGTGCCACCAAAGAAAAAGATG 59.196 43.478 0.00 0.00 0.00 2.90
345 346 3.706086 AGTGTGCCACCAAAGAAAAAGAT 59.294 39.130 0.00 0.00 34.49 2.40
346 347 3.096092 AGTGTGCCACCAAAGAAAAAGA 58.904 40.909 0.00 0.00 34.49 2.52
347 348 3.189285 CAGTGTGCCACCAAAGAAAAAG 58.811 45.455 0.00 0.00 34.49 2.27
348 349 2.564947 ACAGTGTGCCACCAAAGAAAAA 59.435 40.909 0.00 0.00 34.49 1.94
349 350 2.175202 ACAGTGTGCCACCAAAGAAAA 58.825 42.857 0.00 0.00 34.49 2.29
350 351 1.846007 ACAGTGTGCCACCAAAGAAA 58.154 45.000 0.00 0.00 34.49 2.52
351 352 2.092646 ACTACAGTGTGCCACCAAAGAA 60.093 45.455 5.88 0.00 34.49 2.52
352 353 1.488812 ACTACAGTGTGCCACCAAAGA 59.511 47.619 5.88 0.00 34.49 2.52
353 354 1.967319 ACTACAGTGTGCCACCAAAG 58.033 50.000 5.88 0.00 34.49 2.77
354 355 2.436542 ACTACTACAGTGTGCCACCAAA 59.563 45.455 5.88 0.00 35.62 3.28
355 356 2.043992 ACTACTACAGTGTGCCACCAA 58.956 47.619 5.88 0.00 35.62 3.67
356 357 1.712056 ACTACTACAGTGTGCCACCA 58.288 50.000 5.88 0.00 35.62 4.17
357 358 2.806244 CAAACTACTACAGTGTGCCACC 59.194 50.000 5.88 0.00 35.68 4.61
358 359 3.724374 TCAAACTACTACAGTGTGCCAC 58.276 45.455 5.88 0.00 41.68 5.01
359 360 4.409718 TTCAAACTACTACAGTGTGCCA 57.590 40.909 5.88 0.00 41.68 4.92
360 361 5.054477 TCTTTCAAACTACTACAGTGTGCC 58.946 41.667 5.88 0.00 41.68 5.01
361 362 6.258068 ACTTCTTTCAAACTACTACAGTGTGC 59.742 38.462 5.88 0.00 41.68 4.57
362 363 7.772332 ACTTCTTTCAAACTACTACAGTGTG 57.228 36.000 5.88 0.00 43.09 3.82
363 364 9.880157 TTTACTTCTTTCAAACTACTACAGTGT 57.120 29.630 0.00 0.00 37.63 3.55
375 376 9.372541 CGCGTTTACTATTTTACTTCTTTCAAA 57.627 29.630 0.00 0.00 0.00 2.69
376 377 8.550376 ACGCGTTTACTATTTTACTTCTTTCAA 58.450 29.630 5.58 0.00 0.00 2.69
377 378 8.075593 ACGCGTTTACTATTTTACTTCTTTCA 57.924 30.769 5.58 0.00 0.00 2.69
378 379 8.824779 CAACGCGTTTACTATTTTACTTCTTTC 58.175 33.333 24.21 0.00 0.00 2.62
379 380 8.550376 TCAACGCGTTTACTATTTTACTTCTTT 58.450 29.630 24.21 0.00 0.00 2.52
380 381 8.075593 TCAACGCGTTTACTATTTTACTTCTT 57.924 30.769 24.21 0.00 0.00 2.52
381 382 7.642071 TCAACGCGTTTACTATTTTACTTCT 57.358 32.000 24.21 0.00 0.00 2.85
382 383 8.613067 GTTTCAACGCGTTTACTATTTTACTTC 58.387 33.333 24.21 0.00 0.00 3.01
383 384 8.121708 TGTTTCAACGCGTTTACTATTTTACTT 58.878 29.630 24.21 0.00 0.00 2.24
384 385 7.629130 TGTTTCAACGCGTTTACTATTTTACT 58.371 30.769 24.21 0.00 0.00 2.24
385 386 7.819529 TGTTTCAACGCGTTTACTATTTTAC 57.180 32.000 24.21 10.35 0.00 2.01
386 387 9.448294 AATTGTTTCAACGCGTTTACTATTTTA 57.552 25.926 24.21 2.86 0.00 1.52
387 388 7.917720 ATTGTTTCAACGCGTTTACTATTTT 57.082 28.000 24.21 1.09 0.00 1.82
388 389 7.917720 AATTGTTTCAACGCGTTTACTATTT 57.082 28.000 24.21 8.22 0.00 1.40
389 390 8.068977 TGTAATTGTTTCAACGCGTTTACTATT 58.931 29.630 24.21 25.17 0.00 1.73
390 391 7.574496 TGTAATTGTTTCAACGCGTTTACTAT 58.426 30.769 24.21 18.19 0.00 2.12
391 392 6.941802 TGTAATTGTTTCAACGCGTTTACTA 58.058 32.000 24.21 16.82 0.00 1.82
392 393 5.808403 TGTAATTGTTTCAACGCGTTTACT 58.192 33.333 24.21 0.00 0.00 2.24
393 394 6.663480 ATGTAATTGTTTCAACGCGTTTAC 57.337 33.333 24.21 18.89 0.00 2.01
412 413 7.107639 TCAAGTCCGAGATTACATCAATGTA 57.892 36.000 0.00 0.00 41.97 2.29
413 414 5.977635 TCAAGTCCGAGATTACATCAATGT 58.022 37.500 0.70 0.70 44.48 2.71
414 415 6.758416 TCTTCAAGTCCGAGATTACATCAATG 59.242 38.462 0.00 0.00 0.00 2.82
415 416 6.878317 TCTTCAAGTCCGAGATTACATCAAT 58.122 36.000 0.00 0.00 0.00 2.57
416 417 6.280855 TCTTCAAGTCCGAGATTACATCAA 57.719 37.500 0.00 0.00 0.00 2.57
417 418 5.914898 TCTTCAAGTCCGAGATTACATCA 57.085 39.130 0.00 0.00 0.00 3.07
418 419 8.873215 TTATTCTTCAAGTCCGAGATTACATC 57.127 34.615 0.00 0.00 0.00 3.06
419 420 9.099454 GTTTATTCTTCAAGTCCGAGATTACAT 57.901 33.333 0.00 0.00 0.00 2.29
420 421 8.311836 AGTTTATTCTTCAAGTCCGAGATTACA 58.688 33.333 0.00 0.00 0.00 2.41
421 422 8.705048 AGTTTATTCTTCAAGTCCGAGATTAC 57.295 34.615 0.00 0.00 0.00 1.89
422 423 9.798994 GTAGTTTATTCTTCAAGTCCGAGATTA 57.201 33.333 0.00 0.00 0.00 1.75
423 424 7.488471 CGTAGTTTATTCTTCAAGTCCGAGATT 59.512 37.037 0.00 0.00 0.00 2.40
424 425 6.973474 CGTAGTTTATTCTTCAAGTCCGAGAT 59.027 38.462 0.00 0.00 0.00 2.75
425 426 6.072286 ACGTAGTTTATTCTTCAAGTCCGAGA 60.072 38.462 0.00 0.00 37.78 4.04
426 427 6.091437 ACGTAGTTTATTCTTCAAGTCCGAG 58.909 40.000 0.00 0.00 37.78 4.63
427 428 6.017400 ACGTAGTTTATTCTTCAAGTCCGA 57.983 37.500 0.00 0.00 37.78 4.55
428 429 7.025963 AGTACGTAGTTTATTCTTCAAGTCCG 58.974 38.462 0.00 0.00 37.78 4.79
429 430 7.217825 CGAGTACGTAGTTTATTCTTCAAGTCC 59.782 40.741 4.03 0.00 37.78 3.85
430 431 7.959651 TCGAGTACGTAGTTTATTCTTCAAGTC 59.040 37.037 4.03 0.00 37.78 3.01
431 432 7.810658 TCGAGTACGTAGTTTATTCTTCAAGT 58.189 34.615 4.03 0.00 37.78 3.16
432 433 8.665175 TTCGAGTACGTAGTTTATTCTTCAAG 57.335 34.615 4.03 0.00 37.78 3.02
443 444 8.801913 GCAATTTAGTTATTCGAGTACGTAGTT 58.198 33.333 4.03 0.00 37.78 2.24
445 446 7.164826 ACGCAATTTAGTTATTCGAGTACGTAG 59.835 37.037 0.00 0.00 40.69 3.51
446 447 6.966632 ACGCAATTTAGTTATTCGAGTACGTA 59.033 34.615 0.00 0.00 40.69 3.57
447 448 5.801947 ACGCAATTTAGTTATTCGAGTACGT 59.198 36.000 0.00 0.00 40.69 3.57
448 449 6.252036 ACGCAATTTAGTTATTCGAGTACG 57.748 37.500 0.00 0.00 41.26 3.67
449 450 7.450627 ACAACGCAATTTAGTTATTCGAGTAC 58.549 34.615 0.00 0.00 0.00 2.73
450 451 7.585286 ACAACGCAATTTAGTTATTCGAGTA 57.415 32.000 0.00 0.00 0.00 2.59
451 452 6.476243 ACAACGCAATTTAGTTATTCGAGT 57.524 33.333 0.00 0.00 0.00 4.18
452 453 7.117454 CCTACAACGCAATTTAGTTATTCGAG 58.883 38.462 0.00 0.00 0.00 4.04
453 454 6.036300 CCCTACAACGCAATTTAGTTATTCGA 59.964 38.462 0.00 0.00 0.00 3.71
454 455 6.036300 TCCCTACAACGCAATTTAGTTATTCG 59.964 38.462 0.00 0.00 0.00 3.34
455 456 7.311364 TCCCTACAACGCAATTTAGTTATTC 57.689 36.000 0.00 0.00 0.00 1.75
456 457 7.608761 TCTTCCCTACAACGCAATTTAGTTATT 59.391 33.333 0.00 0.00 0.00 1.40
457 458 7.107542 TCTTCCCTACAACGCAATTTAGTTAT 58.892 34.615 0.00 0.00 0.00 1.89
458 459 6.465948 TCTTCCCTACAACGCAATTTAGTTA 58.534 36.000 0.00 0.00 0.00 2.24
459 460 5.310451 TCTTCCCTACAACGCAATTTAGTT 58.690 37.500 0.00 0.00 0.00 2.24
460 461 4.901868 TCTTCCCTACAACGCAATTTAGT 58.098 39.130 0.00 0.00 0.00 2.24
461 462 5.873179 TTCTTCCCTACAACGCAATTTAG 57.127 39.130 0.00 0.00 0.00 1.85
462 463 6.039493 TGTTTTCTTCCCTACAACGCAATTTA 59.961 34.615 0.00 0.00 0.00 1.40
463 464 5.163499 TGTTTTCTTCCCTACAACGCAATTT 60.163 36.000 0.00 0.00 0.00 1.82
464 465 4.339814 TGTTTTCTTCCCTACAACGCAATT 59.660 37.500 0.00 0.00 0.00 2.32
465 466 3.886505 TGTTTTCTTCCCTACAACGCAAT 59.113 39.130 0.00 0.00 0.00 3.56
466 467 3.280295 TGTTTTCTTCCCTACAACGCAA 58.720 40.909 0.00 0.00 0.00 4.85
467 468 2.920524 TGTTTTCTTCCCTACAACGCA 58.079 42.857 0.00 0.00 0.00 5.24
468 469 3.562557 TCTTGTTTTCTTCCCTACAACGC 59.437 43.478 0.00 0.00 0.00 4.84
469 470 4.213482 CCTCTTGTTTTCTTCCCTACAACG 59.787 45.833 0.00 0.00 0.00 4.10
470 471 5.238868 GTCCTCTTGTTTTCTTCCCTACAAC 59.761 44.000 0.00 0.00 0.00 3.32
471 472 5.374071 GTCCTCTTGTTTTCTTCCCTACAA 58.626 41.667 0.00 0.00 0.00 2.41
472 473 4.502604 CGTCCTCTTGTTTTCTTCCCTACA 60.503 45.833 0.00 0.00 0.00 2.74
473 474 3.995048 CGTCCTCTTGTTTTCTTCCCTAC 59.005 47.826 0.00 0.00 0.00 3.18
474 475 3.899360 TCGTCCTCTTGTTTTCTTCCCTA 59.101 43.478 0.00 0.00 0.00 3.53
475 476 2.704065 TCGTCCTCTTGTTTTCTTCCCT 59.296 45.455 0.00 0.00 0.00 4.20
476 477 3.121738 TCGTCCTCTTGTTTTCTTCCC 57.878 47.619 0.00 0.00 0.00 3.97
477 478 4.127907 AGTTCGTCCTCTTGTTTTCTTCC 58.872 43.478 0.00 0.00 0.00 3.46
478 479 4.809426 TGAGTTCGTCCTCTTGTTTTCTTC 59.191 41.667 5.85 0.00 32.50 2.87
479 480 4.766375 TGAGTTCGTCCTCTTGTTTTCTT 58.234 39.130 5.85 0.00 32.50 2.52
480 481 4.402056 TGAGTTCGTCCTCTTGTTTTCT 57.598 40.909 5.85 0.00 32.50 2.52
481 482 5.263948 GTTTGAGTTCGTCCTCTTGTTTTC 58.736 41.667 5.85 0.00 32.50 2.29
482 483 4.201783 CGTTTGAGTTCGTCCTCTTGTTTT 60.202 41.667 5.85 0.00 32.50 2.43
483 484 3.308866 CGTTTGAGTTCGTCCTCTTGTTT 59.691 43.478 5.85 0.00 32.50 2.83
484 485 2.864343 CGTTTGAGTTCGTCCTCTTGTT 59.136 45.455 5.85 0.00 32.50 2.83
485 486 2.470821 CGTTTGAGTTCGTCCTCTTGT 58.529 47.619 5.85 0.00 32.50 3.16
486 487 1.792949 CCGTTTGAGTTCGTCCTCTTG 59.207 52.381 5.85 0.00 32.50 3.02
487 488 1.684983 TCCGTTTGAGTTCGTCCTCTT 59.315 47.619 5.85 0.00 32.50 2.85
488 489 1.325355 TCCGTTTGAGTTCGTCCTCT 58.675 50.000 5.85 0.00 32.50 3.69
489 490 2.365408 ATCCGTTTGAGTTCGTCCTC 57.635 50.000 0.00 0.00 0.00 3.71
490 491 2.036733 TCAATCCGTTTGAGTTCGTCCT 59.963 45.455 0.00 0.00 39.44 3.85
491 492 2.409975 TCAATCCGTTTGAGTTCGTCC 58.590 47.619 0.00 0.00 39.44 4.79
506 507 3.836146 TGGATGGTGGATTGGATCAATC 58.164 45.455 11.06 11.06 46.52 2.67
507 508 3.977489 TGGATGGTGGATTGGATCAAT 57.023 42.857 0.00 0.00 36.72 2.57
508 509 3.568443 CATGGATGGTGGATTGGATCAA 58.432 45.455 0.00 0.00 0.00 2.57
509 510 2.753846 GCATGGATGGTGGATTGGATCA 60.754 50.000 0.00 0.00 0.00 2.92
510 511 1.891150 GCATGGATGGTGGATTGGATC 59.109 52.381 0.00 0.00 0.00 3.36
511 512 1.502039 AGCATGGATGGTGGATTGGAT 59.498 47.619 0.00 0.00 37.10 3.41
512 513 0.928505 AGCATGGATGGTGGATTGGA 59.071 50.000 0.00 0.00 37.10 3.53
513 514 1.784358 AAGCATGGATGGTGGATTGG 58.216 50.000 0.00 0.00 38.70 3.16
514 515 3.899052 AAAAGCATGGATGGTGGATTG 57.101 42.857 0.00 0.00 38.70 2.67
515 516 3.620472 GCAAAAAGCATGGATGGTGGATT 60.620 43.478 0.00 0.00 44.79 3.01
516 517 2.093341 GCAAAAAGCATGGATGGTGGAT 60.093 45.455 0.00 0.00 44.79 3.41
517 518 1.275856 GCAAAAAGCATGGATGGTGGA 59.724 47.619 0.00 0.00 44.79 4.02
518 519 1.729284 GCAAAAAGCATGGATGGTGG 58.271 50.000 0.00 0.00 44.79 4.61
519 520 1.067706 TCGCAAAAAGCATGGATGGTG 60.068 47.619 0.00 0.00 46.13 4.17
520 521 1.255882 TCGCAAAAAGCATGGATGGT 58.744 45.000 0.00 0.00 46.13 3.55
521 522 2.159212 TGATCGCAAAAAGCATGGATGG 60.159 45.455 0.00 0.00 46.13 3.51
522 523 2.855963 GTGATCGCAAAAAGCATGGATG 59.144 45.455 0.16 0.00 46.13 3.51
523 524 2.159198 GGTGATCGCAAAAAGCATGGAT 60.159 45.455 8.82 0.00 46.13 3.41
524 525 1.202114 GGTGATCGCAAAAAGCATGGA 59.798 47.619 8.82 0.00 46.13 3.41
525 526 1.632422 GGTGATCGCAAAAAGCATGG 58.368 50.000 8.82 0.00 46.13 3.66
526 527 1.203052 AGGGTGATCGCAAAAAGCATG 59.797 47.619 8.82 0.00 46.13 4.06
527 528 1.203052 CAGGGTGATCGCAAAAAGCAT 59.797 47.619 8.82 0.00 46.13 3.79
528 529 0.597568 CAGGGTGATCGCAAAAAGCA 59.402 50.000 8.82 0.00 46.13 3.91
529 530 0.881118 TCAGGGTGATCGCAAAAAGC 59.119 50.000 8.82 0.00 40.87 3.51
530 531 1.200020 GGTCAGGGTGATCGCAAAAAG 59.800 52.381 8.82 0.00 0.00 2.27
531 532 1.202879 AGGTCAGGGTGATCGCAAAAA 60.203 47.619 8.82 0.00 31.44 1.94
532 533 0.400213 AGGTCAGGGTGATCGCAAAA 59.600 50.000 8.82 0.00 31.44 2.44
533 534 0.400213 AAGGTCAGGGTGATCGCAAA 59.600 50.000 8.82 0.00 31.44 3.68
534 535 0.321564 CAAGGTCAGGGTGATCGCAA 60.322 55.000 8.82 0.00 31.44 4.85
535 536 1.296392 CAAGGTCAGGGTGATCGCA 59.704 57.895 8.82 0.00 31.44 5.10
536 537 2.109126 GCAAGGTCAGGGTGATCGC 61.109 63.158 0.00 0.00 31.44 4.58
537 538 0.824109 TAGCAAGGTCAGGGTGATCG 59.176 55.000 0.00 0.00 31.44 3.69
538 539 2.486191 CCATAGCAAGGTCAGGGTGATC 60.486 54.545 0.00 0.00 0.00 2.92
539 540 1.492176 CCATAGCAAGGTCAGGGTGAT 59.508 52.381 0.00 0.00 0.00 3.06
540 541 0.911769 CCATAGCAAGGTCAGGGTGA 59.088 55.000 0.00 0.00 0.00 4.02
541 542 0.911769 TCCATAGCAAGGTCAGGGTG 59.088 55.000 0.00 0.00 0.00 4.61
542 543 1.207791 CTCCATAGCAAGGTCAGGGT 58.792 55.000 0.00 0.00 0.00 4.34
543 544 0.471617 CCTCCATAGCAAGGTCAGGG 59.528 60.000 0.00 0.00 0.00 4.45
544 545 0.471617 CCCTCCATAGCAAGGTCAGG 59.528 60.000 0.00 0.00 0.00 3.86
545 546 0.471617 CCCCTCCATAGCAAGGTCAG 59.528 60.000 0.00 0.00 0.00 3.51
546 547 1.635817 GCCCCTCCATAGCAAGGTCA 61.636 60.000 0.00 0.00 0.00 4.02
547 548 1.149401 GCCCCTCCATAGCAAGGTC 59.851 63.158 0.00 0.00 0.00 3.85
548 549 2.386935 GGCCCCTCCATAGCAAGGT 61.387 63.158 0.00 0.00 34.01 3.50
549 550 1.936767 TTGGCCCCTCCATAGCAAGG 61.937 60.000 0.00 0.00 46.04 3.61
550 551 0.186873 ATTGGCCCCTCCATAGCAAG 59.813 55.000 0.00 0.00 46.04 4.01
551 552 1.425066 CTATTGGCCCCTCCATAGCAA 59.575 52.381 0.00 0.00 46.04 3.91
552 553 1.067295 CTATTGGCCCCTCCATAGCA 58.933 55.000 0.00 0.00 46.04 3.49
553 554 0.322906 GCTATTGGCCCCTCCATAGC 60.323 60.000 0.00 6.27 46.04 2.97
554 555 1.280421 GAGCTATTGGCCCCTCCATAG 59.720 57.143 0.00 0.00 46.04 2.23
555 556 1.362224 GAGCTATTGGCCCCTCCATA 58.638 55.000 0.00 0.00 46.04 2.74
556 557 1.430369 GGAGCTATTGGCCCCTCCAT 61.430 60.000 14.81 0.00 46.04 3.41
557 558 2.078665 GGAGCTATTGGCCCCTCCA 61.079 63.158 14.81 0.00 42.66 3.86
558 559 1.772156 AGGAGCTATTGGCCCCTCC 60.772 63.158 0.00 7.81 46.71 4.30
1209 1211 0.178961 GAACCTGAAAACAGGGGGCT 60.179 55.000 18.47 2.58 46.38 5.19
1800 1804 3.732048 TGGTTATTTTCTCAGGGTCCC 57.268 47.619 0.00 0.00 0.00 4.46
2176 2183 4.196193 GTGTATTGCTATGGGTTGCTACA 58.804 43.478 0.00 0.00 0.00 2.74
2393 2400 2.168666 GAGCCCGAAGAAGAACCCGT 62.169 60.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.