Multiple sequence alignment - TraesCS5B01G556500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G556500 chr5B 100.000 3083 0 0 1 3083 705043359 705040277 0.000000e+00 5694
1 TraesCS5B01G556500 chr5B 94.853 136 6 1 2939 3074 699614290 699614424 8.660000e-51 211
2 TraesCS5B01G556500 chr5B 96.063 127 5 0 543 669 221844485 221844359 1.120000e-49 207
3 TraesCS5B01G556500 chr5B 89.706 136 10 4 1325 1458 367212604 367212471 1.470000e-38 171
4 TraesCS5B01G556500 chr4A 88.765 1967 128 47 670 2580 610040898 610042827 0.000000e+00 2322
5 TraesCS5B01G556500 chr4A 88.235 544 31 14 1 543 610040385 610040896 1.210000e-173 619
6 TraesCS5B01G556500 chr4A 89.744 273 20 4 992 1256 610047120 610047392 2.940000e-90 342
7 TraesCS5B01G556500 chr4A 95.902 122 5 0 2653 2774 610044531 610044652 6.740000e-47 198
8 TraesCS5B01G556500 chr4A 86.806 144 15 3 2497 2639 610124381 610124521 1.140000e-34 158
9 TraesCS5B01G556500 chr4A 98.718 78 1 0 2868 2945 610044961 610045038 4.150000e-29 139
10 TraesCS5B01G556500 chr4A 94.805 77 3 1 2769 2845 610044887 610044962 5.400000e-23 119
11 TraesCS5B01G556500 chr5D 90.915 1508 86 23 668 2146 557942462 557940977 0.000000e+00 1978
12 TraesCS5B01G556500 chr5D 96.216 370 14 0 2575 2944 557938817 557938448 9.450000e-170 606
13 TraesCS5B01G556500 chr5D 85.650 446 31 18 2154 2580 557940937 557940506 3.650000e-119 438
14 TraesCS5B01G556500 chr5D 85.160 438 34 13 113 544 557942873 557942461 1.320000e-113 420
15 TraesCS5B01G556500 chr5D 77.348 543 75 23 1623 2148 557792389 557791878 8.420000e-71 278
16 TraesCS5B01G556500 chr5D 88.971 136 11 4 1325 1458 317453005 317452872 6.840000e-37 165
17 TraesCS5B01G556500 chr2B 97.037 135 4 0 540 674 655599881 655599747 8.600000e-56 228
18 TraesCS5B01G556500 chr2B 96.269 134 5 0 543 676 662686158 662686291 1.440000e-53 220
19 TraesCS5B01G556500 chr2B 94.406 143 5 3 2939 3079 800545041 800544900 1.860000e-52 217
20 TraesCS5B01G556500 chr2B 93.750 144 8 1 2939 3082 789947093 789946951 6.700000e-52 215
21 TraesCS5B01G556500 chr7B 98.425 127 2 0 543 669 20898804 20898678 1.110000e-54 224
22 TraesCS5B01G556500 chr7B 94.161 137 8 0 2943 3079 494744551 494744415 3.120000e-50 209
23 TraesCS5B01G556500 chr7B 92.517 147 9 2 540 685 529151324 529151469 3.120000e-50 209
24 TraesCS5B01G556500 chr7B 92.466 146 9 2 2936 3081 697933623 697933480 1.120000e-49 207
25 TraesCS5B01G556500 chr3A 96.992 133 4 0 540 672 159530326 159530458 1.110000e-54 224
26 TraesCS5B01G556500 chr6B 95.620 137 4 1 533 669 542584876 542584742 5.180000e-53 219
27 TraesCS5B01G556500 chr1A 96.241 133 3 2 2943 3075 562906911 562906781 1.860000e-52 217
28 TraesCS5B01G556500 chr1A 93.617 141 9 0 2940 3080 388684884 388685024 8.660000e-51 211
29 TraesCS5B01G556500 chr3B 94.326 141 7 1 536 676 383716623 383716484 6.700000e-52 215
30 TraesCS5B01G556500 chr2A 93.750 144 7 2 2936 3078 2369596 2369454 6.700000e-52 215
31 TraesCS5B01G556500 chr1D 93.750 144 8 1 537 679 255827888 255827745 6.700000e-52 215
32 TraesCS5B01G556500 chr1B 94.245 139 6 2 2932 3070 623687571 623687707 8.660000e-51 211
33 TraesCS5B01G556500 chr5A 88.971 136 11 4 1325 1458 412104168 412104035 6.840000e-37 165
34 TraesCS5B01G556500 chr6A 81.683 202 31 6 1298 1496 491027846 491028044 2.460000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G556500 chr5B 705040277 705043359 3082 True 5694.000000 5694 100.000000 1 3083 1 chr5B.!!$R3 3082
1 TraesCS5B01G556500 chr4A 610040385 610047392 7007 False 623.166667 2322 92.694833 1 2945 6 chr4A.!!$F2 2944
2 TraesCS5B01G556500 chr5D 557938448 557942873 4425 True 860.500000 1978 89.485250 113 2944 4 chr5D.!!$R3 2831
3 TraesCS5B01G556500 chr5D 557791878 557792389 511 True 278.000000 278 77.348000 1623 2148 1 chr5D.!!$R2 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 629 0.037326 ACGTGACTTGATGCATCCGT 60.037 50.0 23.67 20.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2085 2130 0.319125 GTCCTTCCGATCAGGCGATC 60.319 60.0 8.61 8.61 44.04 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.904626 AGTTAACATATCCCAATCAGCTCTT 58.095 36.000 8.61 0.00 0.00 2.85
56 57 5.292765 TCAGCTCTTTTCGATCATATCCAC 58.707 41.667 0.00 0.00 0.00 4.02
59 60 5.699915 AGCTCTTTTCGATCATATCCACATG 59.300 40.000 0.00 0.00 0.00 3.21
68 69 3.586429 TCATATCCACATGTCCCTAGCA 58.414 45.455 0.00 0.00 0.00 3.49
104 105 2.092429 AGGTTCTGTGCAAGGAGTTTGA 60.092 45.455 0.00 0.00 39.21 2.69
118 119 9.918630 GCAAGGAGTTTGATTATATGCAAATAT 57.081 29.630 0.00 0.00 39.21 1.28
206 207 5.927281 AATTTCTGCAGCCTCATTTATGT 57.073 34.783 9.47 0.00 0.00 2.29
207 208 4.707030 TTTCTGCAGCCTCATTTATGTG 57.293 40.909 9.47 0.00 0.00 3.21
208 209 3.632643 TCTGCAGCCTCATTTATGTGA 57.367 42.857 9.47 0.00 0.00 3.58
209 210 4.160642 TCTGCAGCCTCATTTATGTGAT 57.839 40.909 9.47 0.00 0.00 3.06
210 211 5.294734 TCTGCAGCCTCATTTATGTGATA 57.705 39.130 9.47 0.00 0.00 2.15
211 212 5.303165 TCTGCAGCCTCATTTATGTGATAG 58.697 41.667 9.47 0.00 0.00 2.08
212 213 5.070847 TCTGCAGCCTCATTTATGTGATAGA 59.929 40.000 9.47 0.00 0.00 1.98
233 235 6.477053 AGAGCACTCATAGCAAGAGATTTA 57.523 37.500 7.02 0.00 36.91 1.40
282 284 9.588096 AAGTACTAAACAAAATCCATTCCTTCT 57.412 29.630 0.00 0.00 0.00 2.85
321 323 6.177610 TCTTGGTGGATGTATTGGTCTTTAC 58.822 40.000 0.00 0.00 0.00 2.01
322 324 5.772393 TGGTGGATGTATTGGTCTTTACT 57.228 39.130 0.00 0.00 0.00 2.24
323 325 5.741011 TGGTGGATGTATTGGTCTTTACTC 58.259 41.667 0.00 0.00 0.00 2.59
324 326 5.487488 TGGTGGATGTATTGGTCTTTACTCT 59.513 40.000 0.00 0.00 0.00 3.24
325 327 6.012858 TGGTGGATGTATTGGTCTTTACTCTT 60.013 38.462 0.00 0.00 0.00 2.85
326 328 6.884836 GGTGGATGTATTGGTCTTTACTCTTT 59.115 38.462 0.00 0.00 0.00 2.52
327 329 8.044908 GGTGGATGTATTGGTCTTTACTCTTTA 58.955 37.037 0.00 0.00 0.00 1.85
328 330 9.099454 GTGGATGTATTGGTCTTTACTCTTTAG 57.901 37.037 0.00 0.00 0.00 1.85
329 331 9.042450 TGGATGTATTGGTCTTTACTCTTTAGA 57.958 33.333 0.00 0.00 0.00 2.10
330 332 9.315525 GGATGTATTGGTCTTTACTCTTTAGAC 57.684 37.037 0.00 0.00 38.02 2.59
331 333 9.871238 GATGTATTGGTCTTTACTCTTTAGACA 57.129 33.333 0.00 0.00 39.98 3.41
332 334 9.654663 ATGTATTGGTCTTTACTCTTTAGACAC 57.345 33.333 0.00 0.00 39.98 3.67
333 335 8.644216 TGTATTGGTCTTTACTCTTTAGACACA 58.356 33.333 0.00 0.00 39.98 3.72
334 336 7.964604 ATTGGTCTTTACTCTTTAGACACAC 57.035 36.000 0.00 0.00 39.98 3.82
339 341 5.975344 TCTTTACTCTTTAGACACACACACG 59.025 40.000 0.00 0.00 0.00 4.49
355 357 0.306533 CACGCACAACCCTACACAAC 59.693 55.000 0.00 0.00 0.00 3.32
356 358 0.816421 ACGCACAACCCTACACAACC 60.816 55.000 0.00 0.00 0.00 3.77
357 359 0.816018 CGCACAACCCTACACAACCA 60.816 55.000 0.00 0.00 0.00 3.67
358 360 1.394618 GCACAACCCTACACAACCAA 58.605 50.000 0.00 0.00 0.00 3.67
359 361 1.336755 GCACAACCCTACACAACCAAG 59.663 52.381 0.00 0.00 0.00 3.61
360 362 2.925724 CACAACCCTACACAACCAAGA 58.074 47.619 0.00 0.00 0.00 3.02
361 363 3.283751 CACAACCCTACACAACCAAGAA 58.716 45.455 0.00 0.00 0.00 2.52
466 470 1.216175 ACAGATATGCATGGGTGGCTT 59.784 47.619 10.16 0.00 0.00 4.35
473 477 0.392336 GCATGGGTGGCTTTTCAACA 59.608 50.000 0.00 0.00 0.00 3.33
500 504 8.784043 AGACAATAATACACTTCCACAACTTTC 58.216 33.333 0.00 0.00 0.00 2.62
547 551 9.045223 ACTCAAAAAGCAAAAATGAAATACTCC 57.955 29.630 0.00 0.00 0.00 3.85
548 552 8.376889 TCAAAAAGCAAAAATGAAATACTCCC 57.623 30.769 0.00 0.00 0.00 4.30
549 553 8.210265 TCAAAAAGCAAAAATGAAATACTCCCT 58.790 29.630 0.00 0.00 0.00 4.20
550 554 8.498358 CAAAAAGCAAAAATGAAATACTCCCTC 58.502 33.333 0.00 0.00 0.00 4.30
551 555 5.921962 AGCAAAAATGAAATACTCCCTCC 57.078 39.130 0.00 0.00 0.00 4.30
552 556 4.399303 AGCAAAAATGAAATACTCCCTCCG 59.601 41.667 0.00 0.00 0.00 4.63
553 557 4.157840 GCAAAAATGAAATACTCCCTCCGT 59.842 41.667 0.00 0.00 0.00 4.69
554 558 5.676331 GCAAAAATGAAATACTCCCTCCGTC 60.676 44.000 0.00 0.00 0.00 4.79
555 559 3.840124 AATGAAATACTCCCTCCGTCC 57.160 47.619 0.00 0.00 0.00 4.79
556 560 1.492764 TGAAATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
557 561 1.273381 TGAAATACTCCCTCCGTCCCA 60.273 52.381 0.00 0.00 0.00 4.37
558 562 1.835531 GAAATACTCCCTCCGTCCCAA 59.164 52.381 0.00 0.00 0.00 4.12
559 563 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
560 564 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
561 565 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
562 566 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
563 567 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
564 568 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
565 569 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
566 570 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
567 571 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
568 572 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
569 573 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
570 574 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
571 575 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
572 576 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
573 577 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
574 578 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
575 579 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
576 580 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
577 581 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
578 582 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
579 583 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
580 584 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
588 592 9.582431 TCTTGTCTTAAATTTGTCTAGATACGG 57.418 33.333 0.00 0.00 0.00 4.02
589 593 9.582431 CTTGTCTTAAATTTGTCTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
591 595 9.529325 TGTCTTAAATTTGTCTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
592 596 9.530633 GTCTTAAATTTGTCTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
593 597 9.529325 TCTTAAATTTGTCTAGATACGGATGTG 57.471 33.333 0.00 0.00 0.00 3.21
594 598 6.604735 AAATTTGTCTAGATACGGATGTGC 57.395 37.500 0.00 0.00 0.00 4.57
595 599 3.728076 TTGTCTAGATACGGATGTGCC 57.272 47.619 0.00 0.00 0.00 5.01
596 600 2.945456 TGTCTAGATACGGATGTGCCT 58.055 47.619 0.00 0.00 0.00 4.75
597 601 4.094830 TGTCTAGATACGGATGTGCCTA 57.905 45.455 0.00 0.00 0.00 3.93
598 602 4.466827 TGTCTAGATACGGATGTGCCTAA 58.533 43.478 0.00 0.00 0.00 2.69
599 603 5.077564 TGTCTAGATACGGATGTGCCTAAT 58.922 41.667 0.00 0.00 0.00 1.73
600 604 6.243148 TGTCTAGATACGGATGTGCCTAATA 58.757 40.000 0.00 0.00 0.00 0.98
601 605 6.150641 TGTCTAGATACGGATGTGCCTAATAC 59.849 42.308 0.00 0.00 0.00 1.89
602 606 6.374894 GTCTAGATACGGATGTGCCTAATACT 59.625 42.308 0.00 0.00 0.00 2.12
603 607 7.551974 GTCTAGATACGGATGTGCCTAATACTA 59.448 40.741 0.00 0.00 0.00 1.82
604 608 8.105197 TCTAGATACGGATGTGCCTAATACTAA 58.895 37.037 0.00 0.00 0.00 2.24
605 609 7.534723 AGATACGGATGTGCCTAATACTAAA 57.465 36.000 0.00 0.00 0.00 1.85
606 610 7.959175 AGATACGGATGTGCCTAATACTAAAA 58.041 34.615 0.00 0.00 0.00 1.52
607 611 7.871463 AGATACGGATGTGCCTAATACTAAAAC 59.129 37.037 0.00 0.00 0.00 2.43
608 612 4.807304 ACGGATGTGCCTAATACTAAAACG 59.193 41.667 0.00 0.00 0.00 3.60
609 613 4.807304 CGGATGTGCCTAATACTAAAACGT 59.193 41.667 0.00 0.00 0.00 3.99
610 614 5.276678 CGGATGTGCCTAATACTAAAACGTG 60.277 44.000 0.00 0.00 0.00 4.49
611 615 5.813672 GGATGTGCCTAATACTAAAACGTGA 59.186 40.000 0.00 0.00 0.00 4.35
612 616 6.238022 GGATGTGCCTAATACTAAAACGTGAC 60.238 42.308 0.00 0.00 0.00 3.67
613 617 5.786311 TGTGCCTAATACTAAAACGTGACT 58.214 37.500 0.00 0.00 0.00 3.41
614 618 6.225318 TGTGCCTAATACTAAAACGTGACTT 58.775 36.000 0.00 0.00 0.00 3.01
615 619 6.146510 TGTGCCTAATACTAAAACGTGACTTG 59.853 38.462 0.00 0.00 0.00 3.16
616 620 6.366877 GTGCCTAATACTAAAACGTGACTTGA 59.633 38.462 0.00 0.00 0.00 3.02
617 621 7.064253 GTGCCTAATACTAAAACGTGACTTGAT 59.936 37.037 0.00 0.00 0.00 2.57
618 622 7.064134 TGCCTAATACTAAAACGTGACTTGATG 59.936 37.037 0.00 0.00 0.00 3.07
619 623 7.399523 CCTAATACTAAAACGTGACTTGATGC 58.600 38.462 0.00 0.00 0.00 3.91
620 624 6.795098 AATACTAAAACGTGACTTGATGCA 57.205 33.333 0.00 0.00 0.00 3.96
621 625 6.985188 ATACTAAAACGTGACTTGATGCAT 57.015 33.333 0.00 0.00 0.00 3.96
622 626 5.283060 ACTAAAACGTGACTTGATGCATC 57.717 39.130 20.14 20.14 0.00 3.91
623 627 3.559238 AAAACGTGACTTGATGCATCC 57.441 42.857 23.67 8.87 0.00 3.51
624 628 1.078709 AACGTGACTTGATGCATCCG 58.921 50.000 23.67 19.38 0.00 4.18
625 629 0.037326 ACGTGACTTGATGCATCCGT 60.037 50.000 23.67 20.00 0.00 4.69
626 630 1.203758 ACGTGACTTGATGCATCCGTA 59.796 47.619 23.67 8.47 0.00 4.02
627 631 2.159099 ACGTGACTTGATGCATCCGTAT 60.159 45.455 23.67 6.88 0.00 3.06
628 632 2.866156 CGTGACTTGATGCATCCGTATT 59.134 45.455 23.67 3.78 0.00 1.89
629 633 3.309682 CGTGACTTGATGCATCCGTATTT 59.690 43.478 23.67 2.33 0.00 1.40
630 634 4.591202 GTGACTTGATGCATCCGTATTTG 58.409 43.478 23.67 8.30 0.00 2.32
631 635 3.627123 TGACTTGATGCATCCGTATTTGG 59.373 43.478 23.67 7.34 0.00 3.28
632 636 3.876914 GACTTGATGCATCCGTATTTGGA 59.123 43.478 23.67 0.00 43.58 3.53
633 637 3.627577 ACTTGATGCATCCGTATTTGGAC 59.372 43.478 23.67 0.00 41.85 4.02
634 638 3.274095 TGATGCATCCGTATTTGGACA 57.726 42.857 23.67 0.00 41.85 4.02
635 639 3.615155 TGATGCATCCGTATTTGGACAA 58.385 40.909 23.67 0.00 41.85 3.18
636 640 4.013050 TGATGCATCCGTATTTGGACAAA 58.987 39.130 23.67 0.00 41.85 2.83
637 641 4.644234 TGATGCATCCGTATTTGGACAAAT 59.356 37.500 23.67 14.02 41.85 2.32
638 642 4.630894 TGCATCCGTATTTGGACAAATC 57.369 40.909 13.07 5.63 41.85 2.17
639 643 4.269183 TGCATCCGTATTTGGACAAATCT 58.731 39.130 13.07 0.00 41.85 2.40
640 644 5.432645 TGCATCCGTATTTGGACAAATCTA 58.567 37.500 13.07 0.00 41.85 1.98
641 645 5.883115 TGCATCCGTATTTGGACAAATCTAA 59.117 36.000 13.07 0.00 41.85 2.10
642 646 6.038161 TGCATCCGTATTTGGACAAATCTAAG 59.962 38.462 13.07 1.07 41.85 2.18
643 647 6.260050 GCATCCGTATTTGGACAAATCTAAGA 59.740 38.462 13.07 7.57 41.85 2.10
644 648 7.630924 CATCCGTATTTGGACAAATCTAAGAC 58.369 38.462 13.07 5.74 41.85 3.01
645 649 6.703319 TCCGTATTTGGACAAATCTAAGACA 58.297 36.000 13.07 0.00 40.99 3.41
646 650 7.162761 TCCGTATTTGGACAAATCTAAGACAA 58.837 34.615 13.07 0.00 40.99 3.18
647 651 7.333423 TCCGTATTTGGACAAATCTAAGACAAG 59.667 37.037 13.07 2.30 40.99 3.16
648 652 7.333423 CCGTATTTGGACAAATCTAAGACAAGA 59.667 37.037 13.07 0.00 40.99 3.02
649 653 8.717821 CGTATTTGGACAAATCTAAGACAAGAA 58.282 33.333 13.07 0.00 40.99 2.52
654 658 9.748708 TTGGACAAATCTAAGACAAGAATTTTG 57.251 29.630 0.00 0.00 34.13 2.44
655 659 8.359642 TGGACAAATCTAAGACAAGAATTTTGG 58.640 33.333 0.00 0.00 33.04 3.28
656 660 7.814587 GGACAAATCTAAGACAAGAATTTTGGG 59.185 37.037 0.00 0.00 33.04 4.12
657 661 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
658 662 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
659 663 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
660 664 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
661 665 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
662 666 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
663 667 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
664 668 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
665 669 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
666 670 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
789 796 4.407945 TCCAACCTCCACCTAGCTTATTAC 59.592 45.833 0.00 0.00 0.00 1.89
790 797 4.369182 CAACCTCCACCTAGCTTATTACG 58.631 47.826 0.00 0.00 0.00 3.18
791 798 3.639952 ACCTCCACCTAGCTTATTACGT 58.360 45.455 0.00 0.00 0.00 3.57
831 838 1.768870 ACCTCCCTATCATTTCCACCG 59.231 52.381 0.00 0.00 0.00 4.94
846 853 3.905968 TCCACCGTCATGTTCCTATCTA 58.094 45.455 0.00 0.00 0.00 1.98
847 854 3.635373 TCCACCGTCATGTTCCTATCTAC 59.365 47.826 0.00 0.00 0.00 2.59
849 856 4.261656 CCACCGTCATGTTCCTATCTACTC 60.262 50.000 0.00 0.00 0.00 2.59
850 857 3.890147 ACCGTCATGTTCCTATCTACTCC 59.110 47.826 0.00 0.00 0.00 3.85
851 858 3.256136 CCGTCATGTTCCTATCTACTCCC 59.744 52.174 0.00 0.00 0.00 4.30
868 881 3.525609 ACTCCCCAAACCAACCAATTTTT 59.474 39.130 0.00 0.00 0.00 1.94
870 883 2.360483 CCCCAAACCAACCAATTTTTGC 59.640 45.455 0.00 0.00 0.00 3.68
881 894 4.236935 ACCAATTTTTGCGACATCACATC 58.763 39.130 0.00 0.00 0.00 3.06
889 902 7.701809 TTTTGCGACATCACATCGTATATAA 57.298 32.000 0.00 0.00 41.68 0.98
893 906 6.143278 TGCGACATCACATCGTATATAAACAC 59.857 38.462 0.00 0.00 41.68 3.32
895 908 7.306341 GCGACATCACATCGTATATAAACACAA 60.306 37.037 0.00 0.00 41.68 3.33
896 909 8.536407 CGACATCACATCGTATATAAACACAAA 58.464 33.333 0.00 0.00 34.84 2.83
899 912 9.811655 CATCACATCGTATATAAACACAAATCC 57.188 33.333 0.00 0.00 0.00 3.01
901 914 9.384764 TCACATCGTATATAAACACAAATCCAA 57.615 29.630 0.00 0.00 0.00 3.53
902 915 9.995957 CACATCGTATATAAACACAAATCCAAA 57.004 29.630 0.00 0.00 0.00 3.28
903 916 9.997482 ACATCGTATATAAACACAAATCCAAAC 57.003 29.630 0.00 0.00 0.00 2.93
904 917 9.445786 CATCGTATATAAACACAAATCCAAACC 57.554 33.333 0.00 0.00 0.00 3.27
921 934 2.853235 ACCCCTTTCCACTTAACTCG 57.147 50.000 0.00 0.00 0.00 4.18
924 937 2.302157 CCCCTTTCCACTTAACTCGTCT 59.698 50.000 0.00 0.00 0.00 4.18
925 938 3.586892 CCCTTTCCACTTAACTCGTCTC 58.413 50.000 0.00 0.00 0.00 3.36
927 940 3.258622 CCTTTCCACTTAACTCGTCTCCT 59.741 47.826 0.00 0.00 0.00 3.69
928 941 4.487019 CTTTCCACTTAACTCGTCTCCTC 58.513 47.826 0.00 0.00 0.00 3.71
929 942 2.444421 TCCACTTAACTCGTCTCCTCC 58.556 52.381 0.00 0.00 0.00 4.30
930 943 2.168496 CCACTTAACTCGTCTCCTCCA 58.832 52.381 0.00 0.00 0.00 3.86
931 944 2.561419 CCACTTAACTCGTCTCCTCCAA 59.439 50.000 0.00 0.00 0.00 3.53
932 945 3.195825 CCACTTAACTCGTCTCCTCCAAT 59.804 47.826 0.00 0.00 0.00 3.16
933 946 4.401519 CCACTTAACTCGTCTCCTCCAATA 59.598 45.833 0.00 0.00 0.00 1.90
934 947 5.069251 CCACTTAACTCGTCTCCTCCAATAT 59.931 44.000 0.00 0.00 0.00 1.28
935 948 6.407074 CCACTTAACTCGTCTCCTCCAATATT 60.407 42.308 0.00 0.00 0.00 1.28
936 949 6.477033 CACTTAACTCGTCTCCTCCAATATTG 59.523 42.308 8.58 8.58 0.00 1.90
937 950 6.154706 ACTTAACTCGTCTCCTCCAATATTGT 59.845 38.462 14.25 0.00 0.00 2.71
938 951 5.422214 AACTCGTCTCCTCCAATATTGTT 57.578 39.130 14.25 0.00 0.00 2.83
940 953 5.903810 ACTCGTCTCCTCCAATATTGTTAC 58.096 41.667 14.25 2.78 0.00 2.50
941 954 5.657302 ACTCGTCTCCTCCAATATTGTTACT 59.343 40.000 14.25 0.00 0.00 2.24
944 957 6.153851 TCGTCTCCTCCAATATTGTTACTCAA 59.846 38.462 14.25 0.00 40.53 3.02
946 959 6.763610 GTCTCCTCCAATATTGTTACTCAAGG 59.236 42.308 14.25 8.70 39.55 3.61
947 960 6.672218 TCTCCTCCAATATTGTTACTCAAGGA 59.328 38.462 14.25 11.74 39.55 3.36
950 963 6.636454 TCCAATATTGTTACTCAAGGAGGT 57.364 37.500 14.25 0.00 39.55 3.85
952 965 5.066505 CCAATATTGTTACTCAAGGAGGTGC 59.933 44.000 14.25 0.00 39.55 5.01
953 966 3.788227 ATTGTTACTCAAGGAGGTGCA 57.212 42.857 0.00 0.00 39.55 4.57
954 967 3.788227 TTGTTACTCAAGGAGGTGCAT 57.212 42.857 0.00 0.00 33.35 3.96
955 968 3.334583 TGTTACTCAAGGAGGTGCATC 57.665 47.619 0.00 0.00 33.35 3.91
956 969 2.271800 GTTACTCAAGGAGGTGCATCG 58.728 52.381 0.00 0.00 33.35 3.84
957 970 0.824109 TACTCAAGGAGGTGCATCGG 59.176 55.000 0.00 0.00 33.35 4.18
958 971 1.817099 CTCAAGGAGGTGCATCGGC 60.817 63.158 0.00 0.00 41.68 5.54
963 976 2.203070 GAGGTGCATCGGCCGATT 60.203 61.111 37.36 23.29 40.13 3.34
968 981 1.145819 TGCATCGGCCGATTGATCA 59.854 52.632 37.36 26.60 40.13 2.92
980 993 2.789092 CGATTGATCAGCGCCAAGAAAC 60.789 50.000 2.29 0.05 0.00 2.78
982 995 1.896220 TGATCAGCGCCAAGAAACTT 58.104 45.000 2.29 0.00 0.00 2.66
994 1023 3.437049 CCAAGAAACTTCCATCCTTCGAC 59.563 47.826 0.00 0.00 0.00 4.20
1030 1059 2.397751 GCGGTGATGCTGCTATTGT 58.602 52.632 0.00 0.00 45.76 2.71
1145 1174 0.250124 TTCGGCGAGTCAAACATGGT 60.250 50.000 10.46 0.00 0.00 3.55
1233 1262 2.493030 CGCTACTACCACCACGGG 59.507 66.667 0.00 0.00 40.22 5.28
1506 1535 1.664306 GTCCTCCAGTTCCGTCGTT 59.336 57.895 0.00 0.00 0.00 3.85
1611 1640 2.094659 CGACGACAGTGACATGGGC 61.095 63.158 0.00 0.00 0.00 5.36
1614 1643 2.046892 GACAGTGACATGGGCGCT 60.047 61.111 7.64 0.00 0.00 5.92
1659 1688 1.480954 GTGTACGTGACCATCTGGGAT 59.519 52.381 0.00 0.00 41.15 3.85
1705 1734 0.249699 CAAGCACACGGTGGACTACA 60.250 55.000 13.48 0.00 33.64 2.74
2075 2120 3.589881 GTCCATGATGCAGGCCGC 61.590 66.667 11.92 11.92 42.89 6.53
2087 2132 4.148825 GGCCGCCGACTGAGTGAT 62.149 66.667 0.00 0.00 0.00 3.06
2088 2133 2.583593 GCCGCCGACTGAGTGATC 60.584 66.667 0.00 0.00 0.00 2.92
2089 2134 2.278206 CCGCCGACTGAGTGATCG 60.278 66.667 0.00 0.00 38.08 3.69
2090 2135 2.951745 CGCCGACTGAGTGATCGC 60.952 66.667 0.00 0.00 37.01 4.58
2091 2136 2.583593 GCCGACTGAGTGATCGCC 60.584 66.667 1.76 0.00 37.01 5.54
2148 2203 4.082190 CCTGTACAGTTGCTTAGCTAGTGA 60.082 45.833 25.22 9.95 37.00 3.41
2152 2207 7.258441 TGTACAGTTGCTTAGCTAGTGATAAG 58.742 38.462 25.22 3.87 42.99 1.73
2156 2211 7.878127 ACAGTTGCTTAGCTAGTGATAAGAAAA 59.122 33.333 25.22 0.00 40.25 2.29
2188 2278 2.189594 TGAGCAGTTGGTTGATGGAG 57.810 50.000 0.00 0.00 0.00 3.86
2195 2285 3.820467 CAGTTGGTTGATGGAGCTGTTTA 59.180 43.478 0.00 0.00 0.00 2.01
2209 2299 9.686683 ATGGAGCTGTTTAGTTTTGTATCTAAT 57.313 29.630 0.00 0.00 0.00 1.73
2258 2353 3.703001 ACCTAATTGAGTGGGTCACTG 57.297 47.619 5.20 0.00 45.44 3.66
2259 2354 3.248024 ACCTAATTGAGTGGGTCACTGA 58.752 45.455 5.20 0.00 45.44 3.41
2260 2355 3.846588 ACCTAATTGAGTGGGTCACTGAT 59.153 43.478 5.20 0.00 45.44 2.90
2261 2356 5.030147 ACCTAATTGAGTGGGTCACTGATA 58.970 41.667 5.20 0.00 45.44 2.15
2289 2384 8.602472 TTAAAGGTGGTGCTAATTAATCCATT 57.398 30.769 6.32 1.89 0.00 3.16
2391 2486 8.784043 ACAACATATTCTTTGGTTAGACTGAAC 58.216 33.333 0.00 0.00 0.00 3.18
2401 2496 3.864003 GGTTAGACTGAACTATGAACGGC 59.136 47.826 0.00 0.00 0.00 5.68
2410 2505 4.819630 TGAACTATGAACGGCTTCAAAACT 59.180 37.500 4.01 0.00 39.90 2.66
2413 2508 2.861462 TGAACGGCTTCAAAACTTGG 57.139 45.000 0.00 0.00 33.20 3.61
2419 2514 2.484264 CGGCTTCAAAACTTGGACCTAG 59.516 50.000 0.93 0.93 0.00 3.02
2433 2528 6.948309 ACTTGGACCTAGAAATTAAGCAATGT 59.052 34.615 10.12 0.00 0.00 2.71
2461 2556 4.082949 GCAAAAAGCATAACTACCGAACCT 60.083 41.667 0.00 0.00 44.79 3.50
2463 2558 6.540205 CAAAAAGCATAACTACCGAACCTAC 58.460 40.000 0.00 0.00 0.00 3.18
2464 2559 5.410355 AAAGCATAACTACCGAACCTACA 57.590 39.130 0.00 0.00 0.00 2.74
2465 2560 5.410355 AAGCATAACTACCGAACCTACAA 57.590 39.130 0.00 0.00 0.00 2.41
2466 2561 5.410355 AGCATAACTACCGAACCTACAAA 57.590 39.130 0.00 0.00 0.00 2.83
2467 2562 5.985911 AGCATAACTACCGAACCTACAAAT 58.014 37.500 0.00 0.00 0.00 2.32
2468 2563 5.815740 AGCATAACTACCGAACCTACAAATG 59.184 40.000 0.00 0.00 0.00 2.32
2469 2564 5.583457 GCATAACTACCGAACCTACAAATGT 59.417 40.000 0.00 0.00 0.00 2.71
2472 2567 8.814235 CATAACTACCGAACCTACAAATGTTAG 58.186 37.037 0.00 0.00 0.00 2.34
2520 2625 6.435591 TGAAATATATTGCTGGAAACCACACA 59.564 34.615 5.03 0.00 0.00 3.72
2535 2640 7.391148 AAACCACACAATATTAACTAGCCTG 57.609 36.000 0.00 0.00 0.00 4.85
2593 4445 5.391256 TGAGGACAGAACCTTACTGTTAGA 58.609 41.667 0.00 0.00 46.57 2.10
2668 4520 0.721718 GCATCGTCTTGAAACCGAGG 59.278 55.000 0.00 0.00 35.70 4.63
2719 4571 4.503741 TGCATCACTTGTTTTAAGCTCC 57.496 40.909 0.00 0.00 0.00 4.70
2761 4613 4.078639 AGGACATAGCTCATAACCAAGC 57.921 45.455 0.00 0.00 38.84 4.01
2768 4620 1.261619 GCTCATAACCAAGCGATTCCG 59.738 52.381 0.00 0.00 39.16 4.30
2797 4888 0.039764 TCTGTCCGAGGACCAGTGAT 59.960 55.000 18.57 0.00 43.97 3.06
2843 4958 7.222999 CGAAAGATTCTTATAAAGAGAACGGCT 59.777 37.037 0.00 0.00 39.03 5.52
2844 4959 8.794335 AAAGATTCTTATAAAGAGAACGGCTT 57.206 30.769 0.00 0.00 39.03 4.35
2845 4960 8.426881 AAGATTCTTATAAAGAGAACGGCTTC 57.573 34.615 0.00 0.00 39.03 3.86
2846 4961 6.987404 AGATTCTTATAAAGAGAACGGCTTCC 59.013 38.462 0.00 0.00 39.03 3.46
2847 4962 5.019785 TCTTATAAAGAGAACGGCTTCCC 57.980 43.478 0.00 0.00 32.71 3.97
2848 4963 4.441079 TCTTATAAAGAGAACGGCTTCCCG 60.441 45.833 0.00 0.00 45.43 5.14
2849 4964 7.411017 TCTTATAAAGAGAACGGCTTCCCGG 62.411 48.000 7.09 0.00 44.82 5.73
2857 4972 3.278157 GGCTTCCCGGAGCAAAAG 58.722 61.111 16.28 6.77 44.49 2.27
2858 4973 1.303317 GGCTTCCCGGAGCAAAAGA 60.303 57.895 16.28 0.00 44.49 2.52
2859 4974 0.681243 GGCTTCCCGGAGCAAAAGAT 60.681 55.000 16.28 0.00 44.49 2.40
2860 4975 0.453390 GCTTCCCGGAGCAAAAGATG 59.547 55.000 0.73 0.00 42.25 2.90
2861 4976 1.950484 GCTTCCCGGAGCAAAAGATGA 60.950 52.381 0.73 0.00 42.25 2.92
2862 4977 2.648059 CTTCCCGGAGCAAAAGATGAT 58.352 47.619 0.73 0.00 0.00 2.45
2863 4978 2.806945 TCCCGGAGCAAAAGATGATT 57.193 45.000 0.73 0.00 0.00 2.57
2864 4979 3.924114 TCCCGGAGCAAAAGATGATTA 57.076 42.857 0.73 0.00 0.00 1.75
2865 4980 3.808728 TCCCGGAGCAAAAGATGATTAG 58.191 45.455 0.73 0.00 0.00 1.73
2866 4981 3.199946 TCCCGGAGCAAAAGATGATTAGT 59.800 43.478 0.73 0.00 0.00 2.24
2945 5060 4.767578 TGACGTGTCCCTAGATACTACT 57.232 45.455 0.00 0.00 32.26 2.57
2946 5061 4.701765 TGACGTGTCCCTAGATACTACTC 58.298 47.826 0.00 0.00 32.26 2.59
2947 5062 4.064388 GACGTGTCCCTAGATACTACTCC 58.936 52.174 0.00 0.00 32.26 3.85
2948 5063 3.181446 ACGTGTCCCTAGATACTACTCCC 60.181 52.174 0.00 0.00 32.26 4.30
2950 5065 4.654915 GTGTCCCTAGATACTACTCCCTC 58.345 52.174 0.00 0.00 31.77 4.30
2951 5066 3.656751 TGTCCCTAGATACTACTCCCTCC 59.343 52.174 0.00 0.00 0.00 4.30
2952 5067 2.911636 TCCCTAGATACTACTCCCTCCG 59.088 54.545 0.00 0.00 0.00 4.63
2953 5068 2.643801 CCCTAGATACTACTCCCTCCGT 59.356 54.545 0.00 0.00 0.00 4.69
2954 5069 3.307621 CCCTAGATACTACTCCCTCCGTC 60.308 56.522 0.00 0.00 0.00 4.79
2955 5070 2.955342 AGATACTACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
2956 5071 1.072015 AGATACTACTCCCTCCGTCCG 59.928 57.143 0.00 0.00 0.00 4.79
2957 5072 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
2959 5074 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2960 5075 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2961 5076 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2962 5077 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2963 5078 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2964 5079 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2967 5082 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2968 5083 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2969 5084 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2970 5085 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2971 5086 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2973 5088 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2976 5091 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2978 5093 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2980 5095 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2988 5103 9.480053 ACTTGTCATCAAAATGAATAAAAGGTG 57.520 29.630 0.00 0.00 43.42 4.00
2989 5104 9.695526 CTTGTCATCAAAATGAATAAAAGGTGA 57.304 29.630 0.00 0.00 43.42 4.02
2991 5106 9.642327 TGTCATCAAAATGAATAAAAGGTGATG 57.358 29.630 0.00 0.00 43.42 3.07
2992 5107 9.643693 GTCATCAAAATGAATAAAAGGTGATGT 57.356 29.630 9.42 0.00 43.42 3.06
3048 5163 4.974368 TTTGTCCATTTTGACGACAAGT 57.026 36.364 0.00 0.00 44.74 3.16
3049 5164 6.438259 TTTTGTCCATTTTGACGACAAGTA 57.562 33.333 0.00 0.00 44.74 2.24
3050 5165 6.627395 TTTGTCCATTTTGACGACAAGTAT 57.373 33.333 0.00 0.00 44.74 2.12
3051 5166 6.627395 TTGTCCATTTTGACGACAAGTATT 57.373 33.333 0.00 0.00 40.59 1.89
3057 6621 5.987777 TTTTGACGACAAGTATTTTCGGA 57.012 34.783 0.00 0.00 37.32 4.55
3067 6631 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3068 6632 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3069 6633 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
3070 6634 1.308069 TTTCGGACGGAGGGAGTACG 61.308 60.000 0.00 0.00 46.50 3.67
3071 6635 2.437359 CGGACGGAGGGAGTACGT 60.437 66.667 0.00 0.00 40.75 3.57
3072 6636 1.153369 CGGACGGAGGGAGTACGTA 60.153 63.158 0.00 0.00 40.75 3.57
3073 6637 1.432270 CGGACGGAGGGAGTACGTAC 61.432 65.000 18.10 18.10 40.75 3.67
3074 6638 0.107459 GGACGGAGGGAGTACGTACT 60.107 60.000 27.71 27.71 41.40 2.73
3075 6639 1.139058 GGACGGAGGGAGTACGTACTA 59.861 57.143 27.44 0.00 41.40 1.82
3079 6643 3.643792 ACGGAGGGAGTACGTACTAGTAT 59.356 47.826 27.44 14.04 39.30 2.12
3080 6644 4.101741 ACGGAGGGAGTACGTACTAGTATT 59.898 45.833 27.44 11.96 39.30 1.89
3081 6645 5.059833 CGGAGGGAGTACGTACTAGTATTT 58.940 45.833 27.44 10.63 36.50 1.40
3082 6646 6.183360 ACGGAGGGAGTACGTACTAGTATTTA 60.183 42.308 27.44 0.00 39.30 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 7.012327 CGAAAAGAGCTGATTGGGATATGTTAA 59.988 37.037 0.00 0.00 0.00 2.01
41 42 4.347876 AGGGACATGTGGATATGATCGAAA 59.652 41.667 1.15 0.00 0.00 3.46
56 57 2.019984 GGAAAGCTTGCTAGGGACATG 58.980 52.381 3.95 0.00 0.00 3.21
59 60 2.498644 AAGGAAAGCTTGCTAGGGAC 57.501 50.000 3.95 0.00 0.00 4.46
189 190 5.303165 TCTATCACATAAATGAGGCTGCAG 58.697 41.667 10.11 10.11 30.46 4.41
203 204 5.303845 TCTTGCTATGAGTGCTCTATCACAT 59.696 40.000 0.68 0.00 39.35 3.21
206 207 5.136105 TCTCTTGCTATGAGTGCTCTATCA 58.864 41.667 0.68 0.00 33.59 2.15
207 208 5.703978 TCTCTTGCTATGAGTGCTCTATC 57.296 43.478 0.68 0.00 33.59 2.08
208 209 6.669125 AATCTCTTGCTATGAGTGCTCTAT 57.331 37.500 0.68 0.00 33.59 1.98
209 210 6.477053 AAATCTCTTGCTATGAGTGCTCTA 57.523 37.500 0.68 0.00 33.59 2.43
210 211 5.356291 AAATCTCTTGCTATGAGTGCTCT 57.644 39.130 0.68 0.00 33.59 4.09
211 212 7.153985 AGATAAATCTCTTGCTATGAGTGCTC 58.846 38.462 0.00 0.00 29.30 4.26
212 213 7.065120 AGATAAATCTCTTGCTATGAGTGCT 57.935 36.000 0.00 0.00 29.30 4.40
321 323 2.218759 GTGCGTGTGTGTGTCTAAAGAG 59.781 50.000 0.00 0.00 0.00 2.85
322 324 2.198406 GTGCGTGTGTGTGTCTAAAGA 58.802 47.619 0.00 0.00 0.00 2.52
323 325 1.930503 TGTGCGTGTGTGTGTCTAAAG 59.069 47.619 0.00 0.00 0.00 1.85
324 326 2.011540 TGTGCGTGTGTGTGTCTAAA 57.988 45.000 0.00 0.00 0.00 1.85
325 327 1.661617 GTTGTGCGTGTGTGTGTCTAA 59.338 47.619 0.00 0.00 0.00 2.10
326 328 1.282817 GTTGTGCGTGTGTGTGTCTA 58.717 50.000 0.00 0.00 0.00 2.59
327 329 1.366111 GGTTGTGCGTGTGTGTGTCT 61.366 55.000 0.00 0.00 0.00 3.41
328 330 1.061887 GGTTGTGCGTGTGTGTGTC 59.938 57.895 0.00 0.00 0.00 3.67
329 331 2.403378 GGGTTGTGCGTGTGTGTGT 61.403 57.895 0.00 0.00 0.00 3.72
330 332 0.812014 TAGGGTTGTGCGTGTGTGTG 60.812 55.000 0.00 0.00 0.00 3.82
331 333 0.812412 GTAGGGTTGTGCGTGTGTGT 60.812 55.000 0.00 0.00 0.00 3.72
332 334 0.812014 TGTAGGGTTGTGCGTGTGTG 60.812 55.000 0.00 0.00 0.00 3.82
333 335 0.812412 GTGTAGGGTTGTGCGTGTGT 60.812 55.000 0.00 0.00 0.00 3.72
334 336 0.812014 TGTGTAGGGTTGTGCGTGTG 60.812 55.000 0.00 0.00 0.00 3.82
339 341 1.336755 CTTGGTTGTGTAGGGTTGTGC 59.663 52.381 0.00 0.00 0.00 4.57
355 357 4.670896 ACTTTTCATGGTTGGTTCTTGG 57.329 40.909 0.00 0.00 0.00 3.61
356 358 5.659463 TCAACTTTTCATGGTTGGTTCTTG 58.341 37.500 11.20 0.00 41.91 3.02
357 359 5.930837 TCAACTTTTCATGGTTGGTTCTT 57.069 34.783 11.20 0.00 41.91 2.52
358 360 5.930837 TTCAACTTTTCATGGTTGGTTCT 57.069 34.783 11.20 0.00 41.91 3.01
359 361 6.976636 TTTTCAACTTTTCATGGTTGGTTC 57.023 33.333 11.20 0.00 41.91 3.62
360 362 9.625747 ATTATTTTCAACTTTTCATGGTTGGTT 57.374 25.926 11.20 2.20 41.91 3.67
361 363 9.271828 GATTATTTTCAACTTTTCATGGTTGGT 57.728 29.630 11.20 0.00 41.91 3.67
434 436 9.399797 CCCATGCATATCTGTATGTACATTAAT 57.600 33.333 14.77 5.57 42.12 1.40
435 437 8.382405 ACCCATGCATATCTGTATGTACATTAA 58.618 33.333 14.77 1.80 42.12 1.40
436 438 7.823799 CACCCATGCATATCTGTATGTACATTA 59.176 37.037 14.77 0.00 42.12 1.90
437 439 6.656270 CACCCATGCATATCTGTATGTACATT 59.344 38.462 14.77 0.00 42.12 2.71
438 440 6.175471 CACCCATGCATATCTGTATGTACAT 58.825 40.000 13.93 13.93 42.12 2.29
439 441 5.512921 CCACCCATGCATATCTGTATGTACA 60.513 44.000 0.00 0.00 42.12 2.90
440 442 4.937620 CCACCCATGCATATCTGTATGTAC 59.062 45.833 0.00 0.00 42.12 2.90
441 443 4.565444 GCCACCCATGCATATCTGTATGTA 60.565 45.833 0.00 0.00 42.12 2.29
443 445 2.751259 GCCACCCATGCATATCTGTATG 59.249 50.000 0.00 2.68 42.99 2.39
445 447 2.057140 AGCCACCCATGCATATCTGTA 58.943 47.619 0.00 0.00 0.00 2.74
447 449 1.991121 AAGCCACCCATGCATATCTG 58.009 50.000 0.00 0.00 0.00 2.90
449 451 2.694628 TGAAAAGCCACCCATGCATATC 59.305 45.455 0.00 0.00 0.00 1.63
466 470 9.126151 TGGAAGTGTATTATTGTCTTGTTGAAA 57.874 29.630 0.00 0.00 0.00 2.69
473 477 8.691661 AAGTTGTGGAAGTGTATTATTGTCTT 57.308 30.769 0.00 0.00 0.00 3.01
543 547 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
544 548 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
545 549 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
546 550 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
547 551 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
548 552 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
549 553 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
550 554 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
551 555 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
552 556 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
553 557 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
554 558 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
562 566 9.582431 CCGTATCTAGACAAATTTAAGACAAGA 57.418 33.333 0.00 0.00 0.00 3.02
563 567 9.582431 TCCGTATCTAGACAAATTTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
565 569 9.529325 CATCCGTATCTAGACAAATTTAAGACA 57.471 33.333 0.00 0.00 0.00 3.41
566 570 9.530633 ACATCCGTATCTAGACAAATTTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
567 571 9.529325 CACATCCGTATCTAGACAAATTTAAGA 57.471 33.333 0.00 0.00 0.00 2.10
568 572 8.276325 GCACATCCGTATCTAGACAAATTTAAG 58.724 37.037 0.00 0.00 0.00 1.85
569 573 7.225931 GGCACATCCGTATCTAGACAAATTTAA 59.774 37.037 0.00 0.00 0.00 1.52
570 574 6.704493 GGCACATCCGTATCTAGACAAATTTA 59.296 38.462 0.00 0.00 0.00 1.40
571 575 5.527582 GGCACATCCGTATCTAGACAAATTT 59.472 40.000 0.00 0.00 0.00 1.82
572 576 5.057149 GGCACATCCGTATCTAGACAAATT 58.943 41.667 0.00 0.00 0.00 1.82
573 577 4.345257 AGGCACATCCGTATCTAGACAAAT 59.655 41.667 0.00 0.00 40.77 2.32
574 578 3.704566 AGGCACATCCGTATCTAGACAAA 59.295 43.478 0.00 0.00 40.77 2.83
575 579 3.296854 AGGCACATCCGTATCTAGACAA 58.703 45.455 0.00 0.00 40.77 3.18
576 580 2.945456 AGGCACATCCGTATCTAGACA 58.055 47.619 0.00 0.00 40.77 3.41
577 581 5.646577 ATTAGGCACATCCGTATCTAGAC 57.353 43.478 0.00 0.00 40.77 2.59
578 582 6.482524 AGTATTAGGCACATCCGTATCTAGA 58.517 40.000 0.00 0.00 40.77 2.43
579 583 6.761099 AGTATTAGGCACATCCGTATCTAG 57.239 41.667 0.00 0.00 40.77 2.43
580 584 8.640063 TTTAGTATTAGGCACATCCGTATCTA 57.360 34.615 0.00 0.00 40.77 1.98
581 585 7.534723 TTTAGTATTAGGCACATCCGTATCT 57.465 36.000 0.00 0.00 40.77 1.98
582 586 7.148853 CGTTTTAGTATTAGGCACATCCGTATC 60.149 40.741 0.00 0.00 40.77 2.24
583 587 6.643770 CGTTTTAGTATTAGGCACATCCGTAT 59.356 38.462 0.00 0.00 40.77 3.06
584 588 5.978919 CGTTTTAGTATTAGGCACATCCGTA 59.021 40.000 0.00 0.00 40.77 4.02
585 589 4.807304 CGTTTTAGTATTAGGCACATCCGT 59.193 41.667 0.00 0.00 40.77 4.69
586 590 4.807304 ACGTTTTAGTATTAGGCACATCCG 59.193 41.667 0.00 0.00 40.77 4.18
587 591 5.813672 TCACGTTTTAGTATTAGGCACATCC 59.186 40.000 0.00 0.00 0.00 3.51
588 592 6.534079 AGTCACGTTTTAGTATTAGGCACATC 59.466 38.462 0.00 0.00 0.00 3.06
589 593 6.403878 AGTCACGTTTTAGTATTAGGCACAT 58.596 36.000 0.00 0.00 0.00 3.21
590 594 5.786311 AGTCACGTTTTAGTATTAGGCACA 58.214 37.500 0.00 0.00 0.00 4.57
591 595 6.366877 TCAAGTCACGTTTTAGTATTAGGCAC 59.633 38.462 0.00 0.00 0.00 5.01
592 596 6.457355 TCAAGTCACGTTTTAGTATTAGGCA 58.543 36.000 0.00 0.00 0.00 4.75
593 597 6.956299 TCAAGTCACGTTTTAGTATTAGGC 57.044 37.500 0.00 0.00 0.00 3.93
594 598 7.064134 TGCATCAAGTCACGTTTTAGTATTAGG 59.936 37.037 0.00 0.00 0.00 2.69
595 599 7.959733 TGCATCAAGTCACGTTTTAGTATTAG 58.040 34.615 0.00 0.00 0.00 1.73
596 600 7.892778 TGCATCAAGTCACGTTTTAGTATTA 57.107 32.000 0.00 0.00 0.00 0.98
597 601 6.795098 TGCATCAAGTCACGTTTTAGTATT 57.205 33.333 0.00 0.00 0.00 1.89
598 602 6.037172 GGATGCATCAAGTCACGTTTTAGTAT 59.963 38.462 27.25 0.00 0.00 2.12
599 603 5.350365 GGATGCATCAAGTCACGTTTTAGTA 59.650 40.000 27.25 0.00 0.00 1.82
600 604 4.154195 GGATGCATCAAGTCACGTTTTAGT 59.846 41.667 27.25 0.00 0.00 2.24
601 605 4.651994 GGATGCATCAAGTCACGTTTTAG 58.348 43.478 27.25 0.00 0.00 1.85
602 606 3.124466 CGGATGCATCAAGTCACGTTTTA 59.876 43.478 27.25 0.00 0.00 1.52
603 607 2.095768 CGGATGCATCAAGTCACGTTTT 60.096 45.455 27.25 0.00 0.00 2.43
604 608 1.464608 CGGATGCATCAAGTCACGTTT 59.535 47.619 27.25 0.00 0.00 3.60
605 609 1.078709 CGGATGCATCAAGTCACGTT 58.921 50.000 27.25 0.00 0.00 3.99
606 610 0.037326 ACGGATGCATCAAGTCACGT 60.037 50.000 27.25 21.69 0.00 4.49
607 611 1.921243 TACGGATGCATCAAGTCACG 58.079 50.000 27.25 21.08 0.00 4.35
608 612 4.496341 CCAAATACGGATGCATCAAGTCAC 60.496 45.833 27.25 8.53 0.00 3.67
609 613 3.627123 CCAAATACGGATGCATCAAGTCA 59.373 43.478 27.25 14.60 0.00 3.41
610 614 3.876914 TCCAAATACGGATGCATCAAGTC 59.123 43.478 27.25 9.62 0.00 3.01
611 615 3.627577 GTCCAAATACGGATGCATCAAGT 59.372 43.478 27.25 25.40 37.41 3.16
612 616 3.627123 TGTCCAAATACGGATGCATCAAG 59.373 43.478 27.25 21.48 37.41 3.02
613 617 3.615155 TGTCCAAATACGGATGCATCAA 58.385 40.909 27.25 12.93 37.41 2.57
614 618 3.274095 TGTCCAAATACGGATGCATCA 57.726 42.857 27.25 8.37 37.41 3.07
615 619 4.630894 TTTGTCCAAATACGGATGCATC 57.369 40.909 18.81 18.81 37.41 3.91
616 620 4.889409 AGATTTGTCCAAATACGGATGCAT 59.111 37.500 0.00 0.00 40.77 3.96
617 621 4.269183 AGATTTGTCCAAATACGGATGCA 58.731 39.130 5.29 0.00 40.77 3.96
618 622 4.900635 AGATTTGTCCAAATACGGATGC 57.099 40.909 5.29 0.00 40.77 3.91
619 623 7.279981 TGTCTTAGATTTGTCCAAATACGGATG 59.720 37.037 5.29 0.00 40.77 3.51
620 624 7.335627 TGTCTTAGATTTGTCCAAATACGGAT 58.664 34.615 5.29 0.00 40.77 4.18
621 625 6.703319 TGTCTTAGATTTGTCCAAATACGGA 58.297 36.000 5.29 0.82 40.77 4.69
622 626 6.978343 TGTCTTAGATTTGTCCAAATACGG 57.022 37.500 5.29 0.00 40.77 4.02
623 627 8.251750 TCTTGTCTTAGATTTGTCCAAATACG 57.748 34.615 5.29 0.00 40.77 3.06
628 632 9.748708 CAAAATTCTTGTCTTAGATTTGTCCAA 57.251 29.630 0.00 0.00 0.00 3.53
629 633 8.359642 CCAAAATTCTTGTCTTAGATTTGTCCA 58.640 33.333 0.00 0.00 28.79 4.02
630 634 7.814587 CCCAAAATTCTTGTCTTAGATTTGTCC 59.185 37.037 0.00 0.00 28.79 4.02
631 635 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
632 636 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
633 637 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
634 638 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
635 639 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
636 640 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
637 641 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
638 642 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
639 643 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
640 644 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
641 645 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
642 646 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
643 647 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
644 648 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
645 649 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
646 650 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
647 651 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
648 652 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
649 653 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
650 654 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
651 655 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
652 656 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
653 657 2.852714 TTTATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
654 658 5.813513 TTATTTTATACTCCCTCCGTCCC 57.186 43.478 0.00 0.00 0.00 4.46
655 659 7.174426 CCATTTTATTTTATACTCCCTCCGTCC 59.826 40.741 0.00 0.00 0.00 4.79
656 660 7.935210 TCCATTTTATTTTATACTCCCTCCGTC 59.065 37.037 0.00 0.00 0.00 4.79
657 661 7.808218 TCCATTTTATTTTATACTCCCTCCGT 58.192 34.615 0.00 0.00 0.00 4.69
658 662 8.685838 TTCCATTTTATTTTATACTCCCTCCG 57.314 34.615 0.00 0.00 0.00 4.63
831 838 4.223953 TGGGGAGTAGATAGGAACATGAC 58.776 47.826 0.00 0.00 0.00 3.06
846 853 2.487746 AATTGGTTGGTTTGGGGAGT 57.512 45.000 0.00 0.00 0.00 3.85
847 854 3.855255 AAAATTGGTTGGTTTGGGGAG 57.145 42.857 0.00 0.00 0.00 4.30
849 856 2.360483 GCAAAAATTGGTTGGTTTGGGG 59.640 45.455 4.73 0.00 32.73 4.96
850 857 2.032675 CGCAAAAATTGGTTGGTTTGGG 59.967 45.455 4.73 3.37 37.50 4.12
851 858 2.939103 TCGCAAAAATTGGTTGGTTTGG 59.061 40.909 4.73 0.00 32.73 3.28
868 881 6.143278 GTGTTTATATACGATGTGATGTCGCA 59.857 38.462 0.00 0.00 42.56 5.10
870 883 7.617533 TGTGTTTATATACGATGTGATGTCG 57.382 36.000 0.00 0.00 44.26 4.35
881 894 7.067737 AGGGGTTTGGATTTGTGTTTATATACG 59.932 37.037 0.00 0.00 0.00 3.06
889 902 3.135712 GGAAAGGGGTTTGGATTTGTGTT 59.864 43.478 0.00 0.00 0.00 3.32
893 906 2.972021 AGTGGAAAGGGGTTTGGATTTG 59.028 45.455 0.00 0.00 0.00 2.32
895 908 3.344535 AAGTGGAAAGGGGTTTGGATT 57.655 42.857 0.00 0.00 0.00 3.01
896 909 4.140782 AGTTAAGTGGAAAGGGGTTTGGAT 60.141 41.667 0.00 0.00 0.00 3.41
897 910 3.205733 AGTTAAGTGGAAAGGGGTTTGGA 59.794 43.478 0.00 0.00 0.00 3.53
898 911 3.572642 AGTTAAGTGGAAAGGGGTTTGG 58.427 45.455 0.00 0.00 0.00 3.28
899 912 3.252458 CGAGTTAAGTGGAAAGGGGTTTG 59.748 47.826 0.00 0.00 0.00 2.93
901 914 2.440627 ACGAGTTAAGTGGAAAGGGGTT 59.559 45.455 0.00 0.00 0.00 4.11
902 915 2.038164 GACGAGTTAAGTGGAAAGGGGT 59.962 50.000 0.00 0.00 0.00 4.95
903 916 2.302157 AGACGAGTTAAGTGGAAAGGGG 59.698 50.000 0.00 0.00 0.00 4.79
904 917 3.586892 GAGACGAGTTAAGTGGAAAGGG 58.413 50.000 0.00 0.00 0.00 3.95
921 934 6.763610 CCTTGAGTAACAATATTGGAGGAGAC 59.236 42.308 19.37 7.70 37.88 3.36
924 937 6.884472 TCCTTGAGTAACAATATTGGAGGA 57.116 37.500 19.37 14.60 37.88 3.71
927 940 6.414732 CACCTCCTTGAGTAACAATATTGGA 58.585 40.000 19.37 4.42 37.88 3.53
928 941 5.066505 GCACCTCCTTGAGTAACAATATTGG 59.933 44.000 19.37 2.26 37.88 3.16
929 942 5.647658 TGCACCTCCTTGAGTAACAATATTG 59.352 40.000 14.01 14.01 37.88 1.90
930 943 5.815581 TGCACCTCCTTGAGTAACAATATT 58.184 37.500 0.00 0.00 37.88 1.28
931 944 5.435686 TGCACCTCCTTGAGTAACAATAT 57.564 39.130 0.00 0.00 37.88 1.28
932 945 4.901197 TGCACCTCCTTGAGTAACAATA 57.099 40.909 0.00 0.00 37.88 1.90
933 946 3.788227 TGCACCTCCTTGAGTAACAAT 57.212 42.857 0.00 0.00 37.88 2.71
934 947 3.674997 GATGCACCTCCTTGAGTAACAA 58.325 45.455 0.00 0.00 36.97 2.83
935 948 2.353704 CGATGCACCTCCTTGAGTAACA 60.354 50.000 0.00 0.00 0.00 2.41
936 949 2.271800 CGATGCACCTCCTTGAGTAAC 58.728 52.381 0.00 0.00 0.00 2.50
937 950 1.207089 CCGATGCACCTCCTTGAGTAA 59.793 52.381 0.00 0.00 0.00 2.24
938 951 0.824109 CCGATGCACCTCCTTGAGTA 59.176 55.000 0.00 0.00 0.00 2.59
940 953 1.817099 GCCGATGCACCTCCTTGAG 60.817 63.158 0.00 0.00 37.47 3.02
941 954 2.268920 GCCGATGCACCTCCTTGA 59.731 61.111 0.00 0.00 37.47 3.02
946 959 2.203070 AATCGGCCGATGCACCTC 60.203 61.111 39.53 0.00 40.13 3.85
947 960 2.329539 ATCAATCGGCCGATGCACCT 62.330 55.000 39.53 22.09 40.13 4.00
949 962 1.159713 TGATCAATCGGCCGATGCAC 61.160 55.000 39.53 28.03 40.13 4.57
950 963 0.881600 CTGATCAATCGGCCGATGCA 60.882 55.000 39.53 29.68 40.13 3.96
958 971 0.811219 TCTTGGCGCTGATCAATCGG 60.811 55.000 7.64 0.00 36.26 4.18
963 976 1.806542 GAAGTTTCTTGGCGCTGATCA 59.193 47.619 7.64 0.00 0.00 2.92
968 981 1.168714 GATGGAAGTTTCTTGGCGCT 58.831 50.000 7.64 0.00 0.00 5.92
980 993 3.808466 TGATCAGTCGAAGGATGGAAG 57.192 47.619 4.92 0.00 0.00 3.46
982 995 2.366590 CCATGATCAGTCGAAGGATGGA 59.633 50.000 0.09 0.00 31.41 3.41
994 1023 2.515290 TGCTGCCGCCATGATCAG 60.515 61.111 0.09 0.00 34.43 2.90
1019 1048 1.885887 AGGCGAAAAACAATAGCAGCA 59.114 42.857 0.00 0.00 0.00 4.41
1071 1100 4.712425 ACCTCGTCGAAACCCGCG 62.712 66.667 0.00 0.00 38.47 6.46
1074 1103 2.741211 GGCACCTCGTCGAAACCC 60.741 66.667 0.00 0.00 0.00 4.11
1137 1166 0.673644 CGGAGGAGCGAACCATGTTT 60.674 55.000 0.00 0.00 0.00 2.83
1287 1316 1.757118 CCGTTGGAGAGATAGAAGGCA 59.243 52.381 0.00 0.00 0.00 4.75
1464 1493 1.280421 AGGATGGAGAACCTGTGCTTC 59.720 52.381 0.00 0.00 34.99 3.86
1506 1535 1.081242 GGTGCCGTCGACGTAGAAA 60.081 57.895 33.49 13.29 37.74 2.52
1677 1706 2.551270 GTGTGCTTGCCGTTCTCG 59.449 61.111 0.00 0.00 0.00 4.04
1728 1757 3.708220 GAGCACGAGCCCCGAGAAG 62.708 68.421 0.00 0.00 43.56 2.85
2047 2083 4.465512 CATGGACACAAGCGGCGC 62.466 66.667 26.86 26.86 0.00 6.53
2049 2085 1.430632 CATCATGGACACAAGCGGC 59.569 57.895 0.00 0.00 0.00 6.53
2075 2120 1.226802 CAGGCGATCACTCAGTCGG 60.227 63.158 0.00 0.00 38.24 4.79
2077 2122 2.132740 GATCAGGCGATCACTCAGTC 57.867 55.000 12.36 0.00 46.33 3.51
2085 2130 0.319125 GTCCTTCCGATCAGGCGATC 60.319 60.000 8.61 8.61 44.04 3.69
2086 2131 1.742768 GTCCTTCCGATCAGGCGAT 59.257 57.895 0.00 0.00 40.77 4.58
2087 2132 2.423898 GGTCCTTCCGATCAGGCGA 61.424 63.158 0.00 0.00 40.77 5.54
2088 2133 2.107141 GGTCCTTCCGATCAGGCG 59.893 66.667 0.00 0.00 40.77 5.52
2089 2134 1.153349 GTGGTCCTTCCGATCAGGC 60.153 63.158 0.00 0.00 40.77 4.85
2090 2135 1.522569 GGTGGTCCTTCCGATCAGG 59.477 63.158 0.00 0.00 42.97 3.86
2156 2211 8.573885 CAACCAACTGCTCATCATAATAATCAT 58.426 33.333 0.00 0.00 0.00 2.45
2248 2343 5.817816 CACCTTTAATCTATCAGTGACCCAC 59.182 44.000 0.00 0.00 34.10 4.61
2260 2355 9.569122 GGATTAATTAGCACCACCTTTAATCTA 57.431 33.333 11.03 0.00 36.76 1.98
2261 2356 8.058847 TGGATTAATTAGCACCACCTTTAATCT 58.941 33.333 11.03 0.00 36.76 2.40
2289 2384 7.013220 AGAAGATAATGATACTGGTCCTGCTA 58.987 38.462 0.00 0.00 0.00 3.49
2331 2426 5.104527 TGTTGCCATCATAGCCTAACTAGTT 60.105 40.000 13.68 13.68 33.29 2.24
2363 2458 9.653287 TCAGTCTAACCAAAGAATATGTTGTAG 57.347 33.333 0.00 0.00 0.00 2.74
2391 2486 4.215399 TCCAAGTTTTGAAGCCGTTCATAG 59.785 41.667 0.00 0.00 42.41 2.23
2396 2491 1.407618 GGTCCAAGTTTTGAAGCCGTT 59.592 47.619 0.00 0.00 0.00 4.44
2401 2496 9.899226 CTTAATTTCTAGGTCCAAGTTTTGAAG 57.101 33.333 0.00 0.00 0.00 3.02
2410 2505 7.669722 AGAACATTGCTTAATTTCTAGGTCCAA 59.330 33.333 0.00 0.00 0.00 3.53
2413 2508 7.486232 GCAAGAACATTGCTTAATTTCTAGGTC 59.514 37.037 5.37 0.00 41.87 3.85
2419 2514 9.161684 CTTTTTGCAAGAACATTGCTTAATTTC 57.838 29.630 13.19 0.00 45.13 2.17
2453 2548 8.036273 CAAATACTAACATTTGTAGGTTCGGT 57.964 34.615 1.33 0.00 39.83 4.69
2503 2608 5.743636 AATATTGTGTGGTTTCCAGCAAT 57.256 34.783 16.52 16.52 40.63 3.56
2508 2613 6.376018 GGCTAGTTAATATTGTGTGGTTTCCA 59.624 38.462 0.00 0.00 0.00 3.53
2535 2640 5.499047 GCACGCTAAGTAAATCCAACATAC 58.501 41.667 0.00 0.00 0.00 2.39
2631 4483 1.696884 TGCACCTACCTGACACATGAA 59.303 47.619 0.00 0.00 0.00 2.57
2668 4520 7.945134 AGACAATATTTTATCAATGTCCTGGC 58.055 34.615 0.00 0.00 38.29 4.85
2719 4571 1.700042 GGGTGGGTCAGAGGCTATGG 61.700 65.000 9.58 0.00 0.00 2.74
2761 4613 3.906998 ACAGATCAATAGCTCGGAATCG 58.093 45.455 0.00 0.00 37.82 3.34
2768 4620 2.887783 TCCTCGGACAGATCAATAGCTC 59.112 50.000 0.00 0.00 0.00 4.09
2797 4888 3.133901 TCGAGATAGGCAGTGGCATTAAA 59.866 43.478 20.04 0.00 43.71 1.52
2843 4958 2.806945 ATCATCTTTTGCTCCGGGAA 57.193 45.000 0.00 0.00 0.00 3.97
2844 4959 2.806945 AATCATCTTTTGCTCCGGGA 57.193 45.000 0.00 0.00 0.00 5.14
2845 4960 3.545703 ACTAATCATCTTTTGCTCCGGG 58.454 45.455 0.00 0.00 0.00 5.73
2846 4961 5.567138 AAACTAATCATCTTTTGCTCCGG 57.433 39.130 0.00 0.00 0.00 5.14
2847 4962 7.064609 TGAGTAAACTAATCATCTTTTGCTCCG 59.935 37.037 8.06 0.00 38.92 4.63
2848 4963 8.178313 GTGAGTAAACTAATCATCTTTTGCTCC 58.822 37.037 8.06 0.00 38.92 4.70
2849 4964 8.178313 GGTGAGTAAACTAATCATCTTTTGCTC 58.822 37.037 0.00 0.00 39.65 4.26
2850 4965 7.665559 TGGTGAGTAAACTAATCATCTTTTGCT 59.334 33.333 0.00 0.00 35.12 3.91
2851 4966 7.816640 TGGTGAGTAAACTAATCATCTTTTGC 58.183 34.615 0.00 0.00 35.12 3.68
2856 4971 9.520515 ACAAAATGGTGAGTAAACTAATCATCT 57.479 29.630 0.00 0.00 35.12 2.90
2859 4974 9.959749 GAAACAAAATGGTGAGTAAACTAATCA 57.040 29.630 0.00 0.00 0.00 2.57
2864 4979 8.504005 CGATAGAAACAAAATGGTGAGTAAACT 58.496 33.333 0.00 0.00 39.76 2.66
2865 4980 8.500773 TCGATAGAAACAAAATGGTGAGTAAAC 58.499 33.333 0.00 0.00 46.15 2.01
2866 4981 8.610248 TCGATAGAAACAAAATGGTGAGTAAA 57.390 30.769 0.00 0.00 46.15 2.01
2945 5060 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2946 5061 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2947 5062 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2948 5063 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2950 5065 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2951 5066 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2952 5067 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2953 5068 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2954 5069 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2955 5070 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2962 5077 9.480053 CACCTTTTATTCATTTTGATGACAAGT 57.520 29.630 0.00 0.00 37.32 3.16
2963 5078 9.695526 TCACCTTTTATTCATTTTGATGACAAG 57.304 29.630 0.00 0.00 37.32 3.16
3026 5141 5.317733 ACTTGTCGTCAAAATGGACAAAA 57.682 34.783 7.18 0.00 46.46 2.44
3027 5142 4.974368 ACTTGTCGTCAAAATGGACAAA 57.026 36.364 7.18 0.00 46.46 2.83
3028 5143 6.627395 AATACTTGTCGTCAAAATGGACAA 57.373 33.333 5.80 5.80 45.46 3.18
3029 5144 6.627395 AAATACTTGTCGTCAAAATGGACA 57.373 33.333 0.00 0.00 38.80 4.02
3030 5145 6.302313 CGAAAATACTTGTCGTCAAAATGGAC 59.698 38.462 0.00 0.00 32.87 4.02
3032 5147 5.567534 CCGAAAATACTTGTCGTCAAAATGG 59.432 40.000 0.00 0.00 32.87 3.16
3033 5148 6.302313 GTCCGAAAATACTTGTCGTCAAAATG 59.698 38.462 0.00 0.00 32.87 2.32
3034 5149 6.368213 GTCCGAAAATACTTGTCGTCAAAAT 58.632 36.000 0.00 0.00 32.87 1.82
3036 5151 4.084952 CGTCCGAAAATACTTGTCGTCAAA 60.085 41.667 0.00 0.00 32.87 2.69
3038 5153 2.981805 CGTCCGAAAATACTTGTCGTCA 59.018 45.455 0.00 0.00 32.93 4.35
3039 5154 2.343544 CCGTCCGAAAATACTTGTCGTC 59.656 50.000 0.00 0.00 32.93 4.20
3040 5155 2.030007 TCCGTCCGAAAATACTTGTCGT 60.030 45.455 0.00 0.00 32.93 4.34
3041 5156 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
3042 5157 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3043 5158 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3044 5159 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3046 5161 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3048 5163 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3049 5164 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
3050 5165 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3051 5166 1.308069 CGTACTCCCTCCGTCCGAAA 61.308 60.000 0.00 0.00 0.00 3.46
3057 6621 1.834263 ACTAGTACGTACTCCCTCCGT 59.166 52.381 30.53 15.70 37.73 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.