Multiple sequence alignment - TraesCS5B01G556400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G556400 | chr5B | 100.000 | 4935 | 0 | 0 | 1 | 4935 | 704996560 | 704991626 | 0.000000e+00 | 9114.0 |
1 | TraesCS5B01G556400 | chr5B | 90.036 | 281 | 24 | 3 | 235 | 515 | 246273838 | 246273562 | 1.310000e-95 | 361.0 |
2 | TraesCS5B01G556400 | chr5B | 81.203 | 266 | 41 | 9 | 4664 | 4924 | 456636195 | 456635934 | 6.480000e-49 | 206.0 |
3 | TraesCS5B01G556400 | chr5B | 94.000 | 100 | 6 | 0 | 795 | 894 | 441442472 | 441442373 | 8.560000e-33 | 152.0 |
4 | TraesCS5B01G556400 | chr5B | 84.706 | 85 | 3 | 7 | 2282 | 2356 | 704994056 | 704993972 | 5.300000e-10 | 76.8 |
5 | TraesCS5B01G556400 | chr5B | 84.706 | 85 | 3 | 7 | 2505 | 2589 | 704994279 | 704994205 | 5.300000e-10 | 76.8 |
6 | TraesCS5B01G556400 | chr5D | 93.629 | 1083 | 44 | 11 | 3344 | 4413 | 557825031 | 557823961 | 0.000000e+00 | 1594.0 |
7 | TraesCS5B01G556400 | chr5D | 92.366 | 1061 | 49 | 14 | 2324 | 3357 | 557826105 | 557825050 | 0.000000e+00 | 1482.0 |
8 | TraesCS5B01G556400 | chr5D | 91.377 | 719 | 25 | 6 | 1513 | 2220 | 557826755 | 557826063 | 0.000000e+00 | 950.0 |
9 | TraesCS5B01G556400 | chr5D | 90.196 | 561 | 18 | 4 | 923 | 1451 | 557827439 | 557826884 | 0.000000e+00 | 697.0 |
10 | TraesCS5B01G556400 | chr5D | 96.226 | 53 | 1 | 1 | 3183 | 3234 | 503317307 | 503317359 | 8.800000e-13 | 86.1 |
11 | TraesCS5B01G556400 | chr5D | 96.226 | 53 | 1 | 1 | 3183 | 3234 | 512404342 | 512404394 | 8.800000e-13 | 86.1 |
12 | TraesCS5B01G556400 | chr5D | 77.857 | 140 | 17 | 9 | 4390 | 4527 | 45872130 | 45872257 | 1.910000e-09 | 75.0 |
13 | TraesCS5B01G556400 | chr4B | 91.987 | 911 | 24 | 2 | 1 | 892 | 649486281 | 649487161 | 0.000000e+00 | 1232.0 |
14 | TraesCS5B01G556400 | chr4B | 87.798 | 713 | 36 | 25 | 3360 | 4024 | 232541 | 233250 | 0.000000e+00 | 787.0 |
15 | TraesCS5B01G556400 | chr4B | 89.423 | 416 | 17 | 14 | 1014 | 1429 | 230250 | 230638 | 2.650000e-137 | 499.0 |
16 | TraesCS5B01G556400 | chr4B | 85.507 | 483 | 32 | 13 | 2368 | 2831 | 231559 | 232022 | 2.080000e-128 | 470.0 |
17 | TraesCS5B01G556400 | chr4B | 93.103 | 319 | 13 | 6 | 3248 | 3562 | 653272865 | 653272552 | 4.500000e-125 | 459.0 |
18 | TraesCS5B01G556400 | chr4B | 95.000 | 220 | 11 | 0 | 2696 | 2915 | 653273164 | 653272945 | 3.660000e-91 | 346.0 |
19 | TraesCS5B01G556400 | chr4B | 94.505 | 182 | 10 | 0 | 1513 | 1694 | 230754 | 230935 | 1.050000e-71 | 281.0 |
20 | TraesCS5B01G556400 | chr4B | 80.952 | 357 | 20 | 20 | 2017 | 2325 | 231109 | 231465 | 6.380000e-59 | 239.0 |
21 | TraesCS5B01G556400 | chr4B | 95.238 | 105 | 4 | 1 | 1838 | 1942 | 230975 | 231078 | 1.100000e-36 | 165.0 |
22 | TraesCS5B01G556400 | chr4B | 89.147 | 129 | 14 | 0 | 2975 | 3103 | 653272993 | 653272865 | 1.420000e-35 | 161.0 |
23 | TraesCS5B01G556400 | chr4B | 93.069 | 101 | 7 | 0 | 795 | 895 | 530479428 | 530479328 | 1.110000e-31 | 148.0 |
24 | TraesCS5B01G556400 | chr4B | 89.691 | 97 | 9 | 1 | 1838 | 1934 | 129289 | 129384 | 6.710000e-24 | 122.0 |
25 | TraesCS5B01G556400 | chr4B | 96.721 | 61 | 1 | 1 | 2507 | 2567 | 231424 | 231483 | 3.140000e-17 | 100.0 |
26 | TraesCS5B01G556400 | chr4B | 80.488 | 123 | 15 | 7 | 4391 | 4511 | 15599740 | 15599625 | 8.800000e-13 | 86.1 |
27 | TraesCS5B01G556400 | chr4B | 97.727 | 44 | 1 | 0 | 2655 | 2698 | 653273225 | 653273182 | 5.300000e-10 | 76.8 |
28 | TraesCS5B01G556400 | chr4B | 97.059 | 34 | 1 | 0 | 2367 | 2400 | 231341 | 231374 | 1.920000e-04 | 58.4 |
29 | TraesCS5B01G556400 | chr4A | 93.020 | 831 | 39 | 9 | 3595 | 4414 | 610252633 | 610253455 | 0.000000e+00 | 1195.0 |
30 | TraesCS5B01G556400 | chr4A | 91.803 | 732 | 36 | 5 | 1032 | 1742 | 610250124 | 610250852 | 0.000000e+00 | 998.0 |
31 | TraesCS5B01G556400 | chr4A | 92.756 | 635 | 26 | 6 | 2451 | 3070 | 610251444 | 610252073 | 0.000000e+00 | 900.0 |
32 | TraesCS5B01G556400 | chr4A | 88.543 | 707 | 32 | 22 | 3360 | 4024 | 191894 | 192593 | 0.000000e+00 | 811.0 |
33 | TraesCS5B01G556400 | chr4A | 94.898 | 490 | 17 | 7 | 3117 | 3599 | 610252066 | 610252554 | 0.000000e+00 | 760.0 |
34 | TraesCS5B01G556400 | chr4A | 86.364 | 616 | 39 | 19 | 1786 | 2365 | 610250854 | 610251460 | 9.020000e-177 | 630.0 |
35 | TraesCS5B01G556400 | chr4A | 89.423 | 416 | 17 | 14 | 1014 | 1429 | 189602 | 189990 | 2.650000e-137 | 499.0 |
36 | TraesCS5B01G556400 | chr4A | 85.714 | 483 | 31 | 13 | 2368 | 2831 | 190912 | 191375 | 4.470000e-130 | 475.0 |
37 | TraesCS5B01G556400 | chr4A | 86.364 | 418 | 39 | 12 | 146 | 563 | 359159519 | 359159120 | 1.630000e-119 | 440.0 |
38 | TraesCS5B01G556400 | chr4A | 94.505 | 182 | 10 | 0 | 1513 | 1694 | 190106 | 190287 | 1.050000e-71 | 281.0 |
39 | TraesCS5B01G556400 | chr4A | 80.726 | 358 | 20 | 20 | 2017 | 2325 | 190461 | 190818 | 2.970000e-57 | 233.0 |
40 | TraesCS5B01G556400 | chr4A | 95.238 | 105 | 4 | 1 | 1838 | 1942 | 190327 | 190430 | 1.100000e-36 | 165.0 |
41 | TraesCS5B01G556400 | chr4A | 89.691 | 97 | 9 | 1 | 1838 | 1934 | 87526 | 87621 | 6.710000e-24 | 122.0 |
42 | TraesCS5B01G556400 | chr4A | 96.721 | 61 | 1 | 1 | 2507 | 2567 | 190777 | 190836 | 3.140000e-17 | 100.0 |
43 | TraesCS5B01G556400 | chr4A | 80.342 | 117 | 9 | 8 | 2324 | 2429 | 610251241 | 610251354 | 5.300000e-10 | 76.8 |
44 | TraesCS5B01G556400 | chr4A | 84.706 | 85 | 1 | 8 | 2282 | 2356 | 610251496 | 610251578 | 1.910000e-09 | 75.0 |
45 | TraesCS5B01G556400 | chr4A | 85.000 | 80 | 3 | 4 | 2507 | 2586 | 610251378 | 610251448 | 6.850000e-09 | 73.1 |
46 | TraesCS5B01G556400 | chr4A | 97.059 | 34 | 1 | 0 | 2367 | 2400 | 190694 | 190727 | 1.920000e-04 | 58.4 |
47 | TraesCS5B01G556400 | chrUn | 88.821 | 823 | 36 | 13 | 1 | 788 | 414322184 | 414321383 | 0.000000e+00 | 959.0 |
48 | TraesCS5B01G556400 | chrUn | 97.129 | 209 | 6 | 0 | 1 | 209 | 414321121 | 414320913 | 2.190000e-93 | 353.0 |
49 | TraesCS5B01G556400 | chrUn | 93.878 | 98 | 6 | 0 | 795 | 892 | 241399283 | 241399380 | 1.110000e-31 | 148.0 |
50 | TraesCS5B01G556400 | chrUn | 73.789 | 454 | 83 | 22 | 3358 | 3788 | 316149788 | 316149348 | 3.980000e-31 | 147.0 |
51 | TraesCS5B01G556400 | chrUn | 94.643 | 56 | 2 | 1 | 3183 | 3237 | 433230457 | 433230402 | 8.800000e-13 | 86.1 |
52 | TraesCS5B01G556400 | chr2D | 88.821 | 823 | 36 | 13 | 1 | 788 | 548457574 | 548458375 | 0.000000e+00 | 959.0 |
53 | TraesCS5B01G556400 | chr2D | 88.821 | 823 | 36 | 13 | 1 | 788 | 548460331 | 548461132 | 0.000000e+00 | 959.0 |
54 | TraesCS5B01G556400 | chr2D | 89.454 | 787 | 28 | 12 | 1 | 753 | 548458637 | 548459402 | 0.000000e+00 | 942.0 |
55 | TraesCS5B01G556400 | chr2D | 88.859 | 754 | 28 | 15 | 1 | 720 | 548461394 | 548462125 | 0.000000e+00 | 876.0 |
56 | TraesCS5B01G556400 | chr2D | 94.984 | 319 | 11 | 4 | 3248 | 3562 | 1689941 | 1689624 | 3.430000e-136 | 496.0 |
57 | TraesCS5B01G556400 | chr2D | 95.455 | 220 | 10 | 0 | 2696 | 2915 | 1690240 | 1690021 | 7.860000e-93 | 351.0 |
58 | TraesCS5B01G556400 | chr2D | 80.974 | 431 | 32 | 16 | 386 | 788 | 548459661 | 548460069 | 3.740000e-76 | 296.0 |
59 | TraesCS5B01G556400 | chr2D | 89.922 | 129 | 13 | 0 | 2975 | 3103 | 1690069 | 1689941 | 3.060000e-37 | 167.0 |
60 | TraesCS5B01G556400 | chr2D | 97.727 | 44 | 1 | 0 | 2655 | 2698 | 1690301 | 1690258 | 5.300000e-10 | 76.8 |
61 | TraesCS5B01G556400 | chr2B | 92.350 | 549 | 28 | 8 | 1 | 545 | 734781723 | 734781185 | 0.000000e+00 | 769.0 |
62 | TraesCS5B01G556400 | chr2B | 85.034 | 147 | 20 | 2 | 158 | 303 | 729632924 | 729632779 | 1.110000e-31 | 148.0 |
63 | TraesCS5B01G556400 | chr2B | 89.286 | 112 | 10 | 2 | 795 | 906 | 4547760 | 4547651 | 6.660000e-29 | 139.0 |
64 | TraesCS5B01G556400 | chr2B | 91.000 | 100 | 5 | 4 | 565 | 660 | 734781108 | 734781009 | 1.110000e-26 | 132.0 |
65 | TraesCS5B01G556400 | chr2B | 100.000 | 33 | 0 | 0 | 2369 | 2401 | 84995039 | 84995007 | 1.480000e-05 | 62.1 |
66 | TraesCS5B01G556400 | chr4D | 84.174 | 853 | 32 | 46 | 3360 | 4120 | 462461 | 463302 | 0.000000e+00 | 732.0 |
67 | TraesCS5B01G556400 | chr4D | 84.198 | 810 | 60 | 39 | 1014 | 1789 | 459815 | 460590 | 0.000000e+00 | 725.0 |
68 | TraesCS5B01G556400 | chr4D | 89.130 | 230 | 13 | 4 | 2368 | 2594 | 461404 | 461624 | 4.870000e-70 | 276.0 |
69 | TraesCS5B01G556400 | chr4D | 82.402 | 358 | 14 | 21 | 2017 | 2325 | 460960 | 461317 | 2.930000e-67 | 267.0 |
70 | TraesCS5B01G556400 | chr4D | 94.488 | 127 | 5 | 2 | 1826 | 1950 | 460799 | 460925 | 1.400000e-45 | 195.0 |
71 | TraesCS5B01G556400 | chr4D | 86.713 | 143 | 10 | 4 | 2698 | 2831 | 461658 | 461800 | 3.080000e-32 | 150.0 |
72 | TraesCS5B01G556400 | chr4D | 80.899 | 178 | 20 | 8 | 622 | 794 | 113183784 | 113183952 | 1.440000e-25 | 128.0 |
73 | TraesCS5B01G556400 | chr4D | 78.571 | 168 | 22 | 7 | 4348 | 4504 | 398543320 | 398543484 | 1.130000e-16 | 99.0 |
74 | TraesCS5B01G556400 | chr4D | 96.226 | 53 | 1 | 1 | 3183 | 3234 | 19904522 | 19904574 | 8.800000e-13 | 86.1 |
75 | TraesCS5B01G556400 | chr4D | 96.226 | 53 | 1 | 1 | 3183 | 3234 | 270703359 | 270703411 | 8.800000e-13 | 86.1 |
76 | TraesCS5B01G556400 | chr4D | 95.238 | 42 | 2 | 0 | 2876 | 2917 | 461869 | 461910 | 3.190000e-07 | 67.6 |
77 | TraesCS5B01G556400 | chr3A | 94.025 | 318 | 15 | 4 | 3248 | 3562 | 528678829 | 528678513 | 3.460000e-131 | 479.0 |
78 | TraesCS5B01G556400 | chr3A | 89.606 | 279 | 16 | 1 | 2655 | 2920 | 528679182 | 528678904 | 4.730000e-90 | 342.0 |
79 | TraesCS5B01G556400 | chr3A | 91.473 | 129 | 11 | 0 | 2975 | 3103 | 528678957 | 528678829 | 1.410000e-40 | 178.0 |
80 | TraesCS5B01G556400 | chr1A | 84.190 | 253 | 39 | 1 | 1184 | 1436 | 579104706 | 579104957 | 1.370000e-60 | 244.0 |
81 | TraesCS5B01G556400 | chr1A | 97.581 | 124 | 3 | 0 | 18 | 141 | 560363977 | 560364100 | 3.870000e-51 | 213.0 |
82 | TraesCS5B01G556400 | chr1A | 74.010 | 581 | 101 | 33 | 4348 | 4893 | 531022200 | 531021635 | 1.810000e-44 | 191.0 |
83 | TraesCS5B01G556400 | chr1A | 84.615 | 195 | 23 | 7 | 601 | 790 | 6078051 | 6078243 | 2.350000e-43 | 187.0 |
84 | TraesCS5B01G556400 | chr1B | 75.413 | 484 | 100 | 14 | 1187 | 1668 | 671296442 | 671295976 | 2.990000e-52 | 217.0 |
85 | TraesCS5B01G556400 | chr1B | 75.413 | 484 | 100 | 14 | 1187 | 1668 | 671339866 | 671339400 | 2.990000e-52 | 217.0 |
86 | TraesCS5B01G556400 | chr1B | 75.413 | 484 | 100 | 14 | 1187 | 1668 | 671368145 | 671367679 | 2.990000e-52 | 217.0 |
87 | TraesCS5B01G556400 | chr1B | 93.939 | 99 | 6 | 0 | 795 | 893 | 239173866 | 239173964 | 3.080000e-32 | 150.0 |
88 | TraesCS5B01G556400 | chr5A | 77.067 | 375 | 59 | 23 | 4558 | 4913 | 698374236 | 698373870 | 1.810000e-44 | 191.0 |
89 | TraesCS5B01G556400 | chr6B | 78.896 | 308 | 44 | 16 | 4575 | 4865 | 88657410 | 88657107 | 6.520000e-44 | 189.0 |
90 | TraesCS5B01G556400 | chr6B | 94.000 | 100 | 6 | 0 | 795 | 894 | 112972397 | 112972298 | 8.560000e-33 | 152.0 |
91 | TraesCS5B01G556400 | chr6B | 93.939 | 99 | 6 | 0 | 795 | 893 | 633356340 | 633356438 | 3.080000e-32 | 150.0 |
92 | TraesCS5B01G556400 | chr6B | 83.838 | 99 | 15 | 1 | 1833 | 1930 | 630606835 | 630606933 | 5.260000e-15 | 93.5 |
93 | TraesCS5B01G556400 | chr6B | 96.154 | 52 | 1 | 1 | 3183 | 3233 | 450074969 | 450075020 | 3.170000e-12 | 84.2 |
94 | TraesCS5B01G556400 | chr7A | 93.939 | 99 | 6 | 0 | 795 | 893 | 700902715 | 700902813 | 3.080000e-32 | 150.0 |
95 | TraesCS5B01G556400 | chr7A | 79.781 | 183 | 19 | 12 | 4348 | 4527 | 234853664 | 234853497 | 3.120000e-22 | 117.0 |
96 | TraesCS5B01G556400 | chr7A | 84.746 | 118 | 15 | 3 | 4791 | 4906 | 496771174 | 496771290 | 1.120000e-21 | 115.0 |
97 | TraesCS5B01G556400 | chr2A | 93.103 | 87 | 6 | 0 | 565 | 651 | 366991517 | 366991431 | 1.440000e-25 | 128.0 |
98 | TraesCS5B01G556400 | chr1D | 79.670 | 182 | 19 | 10 | 627 | 801 | 110568336 | 110568166 | 1.120000e-21 | 115.0 |
99 | TraesCS5B01G556400 | chr1D | 96.226 | 53 | 1 | 1 | 3183 | 3234 | 254463209 | 254463261 | 8.800000e-13 | 86.1 |
100 | TraesCS5B01G556400 | chr7D | 78.395 | 162 | 30 | 4 | 4348 | 4506 | 117821891 | 117821732 | 3.140000e-17 | 100.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G556400 | chr5B | 704991626 | 704996560 | 4934 | True | 3089.200000 | 9114 | 89.804000 | 1 | 4935 | 3 | chr5B.!!$R4 | 4934 |
1 | TraesCS5B01G556400 | chr5D | 557823961 | 557827439 | 3478 | True | 1180.750000 | 1594 | 91.892000 | 923 | 4413 | 4 | chr5D.!!$R1 | 3490 |
2 | TraesCS5B01G556400 | chr4B | 649486281 | 649487161 | 880 | False | 1232.000000 | 1232 | 91.987000 | 1 | 892 | 1 | chr4B.!!$F2 | 891 |
3 | TraesCS5B01G556400 | chr4B | 230250 | 233250 | 3000 | False | 324.925000 | 787 | 90.900375 | 1014 | 4024 | 8 | chr4B.!!$F3 | 3010 |
4 | TraesCS5B01G556400 | chr4B | 653272552 | 653273225 | 673 | True | 260.700000 | 459 | 93.744250 | 2655 | 3562 | 4 | chr4B.!!$R3 | 907 |
5 | TraesCS5B01G556400 | chr4A | 610250124 | 610253455 | 3331 | False | 588.487500 | 1195 | 88.611125 | 1032 | 4414 | 8 | chr4A.!!$F3 | 3382 |
6 | TraesCS5B01G556400 | chr4A | 189602 | 192593 | 2991 | False | 327.800000 | 811 | 90.991125 | 1014 | 4024 | 8 | chr4A.!!$F2 | 3010 |
7 | TraesCS5B01G556400 | chrUn | 414320913 | 414322184 | 1271 | True | 656.000000 | 959 | 92.975000 | 1 | 788 | 2 | chrUn.!!$R3 | 787 |
8 | TraesCS5B01G556400 | chr2D | 548457574 | 548462125 | 4551 | False | 806.400000 | 959 | 87.385800 | 1 | 788 | 5 | chr2D.!!$F1 | 787 |
9 | TraesCS5B01G556400 | chr2D | 1689624 | 1690301 | 677 | True | 272.700000 | 496 | 94.522000 | 2655 | 3562 | 4 | chr2D.!!$R1 | 907 |
10 | TraesCS5B01G556400 | chr2B | 734781009 | 734781723 | 714 | True | 450.500000 | 769 | 91.675000 | 1 | 660 | 2 | chr2B.!!$R4 | 659 |
11 | TraesCS5B01G556400 | chr4D | 459815 | 463302 | 3487 | False | 344.657143 | 732 | 88.049000 | 1014 | 4120 | 7 | chr4D.!!$F5 | 3106 |
12 | TraesCS5B01G556400 | chr3A | 528678513 | 528679182 | 669 | True | 333.000000 | 479 | 91.701333 | 2655 | 3562 | 3 | chr3A.!!$R1 | 907 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
671 | 672 | 0.035458 | GGCGGAGGAAGTGGGATATG | 59.965 | 60.0 | 0.0 | 0.0 | 0.00 | 1.78 | F |
846 | 847 | 0.037734 | GGGTGAGGTGGGACGAAAAT | 59.962 | 55.0 | 0.0 | 0.0 | 0.00 | 1.82 | F |
907 | 908 | 0.179134 | GAGATGCCGACACGCTACTT | 60.179 | 55.0 | 0.0 | 0.0 | 0.00 | 2.24 | F |
917 | 918 | 0.388649 | CACGCTACTTCGGCTGAGTT | 60.389 | 55.0 | 0.0 | 0.0 | 0.00 | 3.01 | F |
2611 | 3058 | 0.396435 | TGACGAGTGCCCTTGTTCAT | 59.604 | 50.0 | 0.0 | 0.0 | 35.34 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2596 | 3043 | 0.038166 | TGGGATGAACAAGGGCACTC | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 | R |
2602 | 3049 | 1.843368 | AGCACATGGGATGAACAAGG | 58.157 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 | R |
2886 | 3407 | 6.040166 | AGGATTTCCTCAAATCATGCATGTAC | 59.960 | 38.462 | 25.43 | 3.19 | 46.94 | 2.90 | R |
2916 | 3546 | 3.703001 | TGCTTCTGGAAACTAAGAGGG | 57.297 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 | R |
4293 | 9365 | 0.037975 | CACCATGGGCTCAAAGCAAC | 60.038 | 55.000 | 18.09 | 0.00 | 44.75 | 4.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
113 | 114 | 3.481453 | GAAGCCTGAAACCACTTCTTCT | 58.519 | 45.455 | 0.00 | 0.00 | 36.45 | 2.85 |
487 | 488 | 4.194720 | GCGACGACAGCGGAGGAT | 62.195 | 66.667 | 0.00 | 0.00 | 43.17 | 3.24 |
488 | 489 | 2.490217 | CGACGACAGCGGAGGATT | 59.510 | 61.111 | 0.00 | 0.00 | 43.17 | 3.01 |
489 | 490 | 1.153823 | CGACGACAGCGGAGGATTT | 60.154 | 57.895 | 0.00 | 0.00 | 43.17 | 2.17 |
490 | 491 | 0.736325 | CGACGACAGCGGAGGATTTT | 60.736 | 55.000 | 0.00 | 0.00 | 43.17 | 1.82 |
491 | 492 | 0.721718 | GACGACAGCGGAGGATTTTG | 59.278 | 55.000 | 0.00 | 0.00 | 43.17 | 2.44 |
492 | 493 | 1.298859 | ACGACAGCGGAGGATTTTGC | 61.299 | 55.000 | 0.00 | 0.00 | 43.17 | 3.68 |
493 | 494 | 1.298157 | CGACAGCGGAGGATTTTGCA | 61.298 | 55.000 | 0.00 | 0.00 | 0.00 | 4.08 |
494 | 495 | 0.449388 | GACAGCGGAGGATTTTGCAG | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
495 | 496 | 1.138247 | CAGCGGAGGATTTTGCAGC | 59.862 | 57.895 | 0.00 | 0.00 | 0.00 | 5.25 |
496 | 497 | 1.001641 | AGCGGAGGATTTTGCAGCT | 60.002 | 52.632 | 0.00 | 0.00 | 0.00 | 4.24 |
497 | 498 | 1.138247 | GCGGAGGATTTTGCAGCTG | 59.862 | 57.895 | 10.11 | 10.11 | 0.00 | 4.24 |
498 | 499 | 1.138247 | CGGAGGATTTTGCAGCTGC | 59.862 | 57.895 | 31.89 | 31.89 | 42.50 | 5.25 |
499 | 500 | 1.138247 | GGAGGATTTTGCAGCTGCG | 59.862 | 57.895 | 32.11 | 0.00 | 45.83 | 5.18 |
500 | 501 | 1.138247 | GAGGATTTTGCAGCTGCGG | 59.862 | 57.895 | 32.11 | 0.00 | 45.83 | 5.69 |
501 | 502 | 2.507769 | GGATTTTGCAGCTGCGGC | 60.508 | 61.111 | 32.11 | 17.90 | 45.83 | 6.53 |
502 | 503 | 2.877582 | GATTTTGCAGCTGCGGCG | 60.878 | 61.111 | 32.11 | 0.51 | 45.83 | 6.46 |
503 | 504 | 3.326889 | GATTTTGCAGCTGCGGCGA | 62.327 | 57.895 | 32.11 | 18.67 | 45.83 | 5.54 |
532 | 533 | 1.501741 | GAAGGATTTTGCAGCGCGA | 59.498 | 52.632 | 12.10 | 0.00 | 0.00 | 5.87 |
564 | 565 | 3.728845 | CATCCACACCCTAGGAAATACG | 58.271 | 50.000 | 11.48 | 0.00 | 37.48 | 3.06 |
565 | 566 | 3.104519 | TCCACACCCTAGGAAATACGA | 57.895 | 47.619 | 11.48 | 0.00 | 0.00 | 3.43 |
566 | 567 | 3.028850 | TCCACACCCTAGGAAATACGAG | 58.971 | 50.000 | 11.48 | 0.00 | 0.00 | 4.18 |
567 | 568 | 2.102588 | CCACACCCTAGGAAATACGAGG | 59.897 | 54.545 | 11.48 | 0.00 | 0.00 | 4.63 |
573 | 574 | 3.158676 | CCTAGGAAATACGAGGGAGAGG | 58.841 | 54.545 | 1.05 | 0.00 | 0.00 | 3.69 |
574 | 575 | 1.415200 | AGGAAATACGAGGGAGAGGC | 58.585 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
575 | 576 | 1.120530 | GGAAATACGAGGGAGAGGCA | 58.879 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
576 | 577 | 1.069358 | GGAAATACGAGGGAGAGGCAG | 59.931 | 57.143 | 0.00 | 0.00 | 0.00 | 4.85 |
577 | 578 | 2.032620 | GAAATACGAGGGAGAGGCAGA | 58.967 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
578 | 579 | 1.698506 | AATACGAGGGAGAGGCAGAG | 58.301 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
579 | 580 | 0.178975 | ATACGAGGGAGAGGCAGAGG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
580 | 581 | 2.285889 | TACGAGGGAGAGGCAGAGGG | 62.286 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
581 | 582 | 2.445654 | GAGGGAGAGGCAGAGGGG | 60.446 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
582 | 583 | 3.288381 | AGGGAGAGGCAGAGGGGT | 61.288 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
583 | 584 | 3.086600 | GGGAGAGGCAGAGGGGTG | 61.087 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
584 | 585 | 3.086600 | GGAGAGGCAGAGGGGTGG | 61.087 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
585 | 586 | 3.791586 | GAGAGGCAGAGGGGTGGC | 61.792 | 72.222 | 0.00 | 0.00 | 43.28 | 5.01 |
591 | 592 | 3.966543 | CAGAGGGGTGGCGGGTTT | 61.967 | 66.667 | 0.00 | 0.00 | 0.00 | 3.27 |
592 | 593 | 3.966543 | AGAGGGGTGGCGGGTTTG | 61.967 | 66.667 | 0.00 | 0.00 | 0.00 | 2.93 |
597 | 598 | 4.589675 | GGTGGCGGGTTTGGGTCA | 62.590 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
598 | 599 | 2.282887 | GTGGCGGGTTTGGGTCAT | 60.283 | 61.111 | 0.00 | 0.00 | 0.00 | 3.06 |
599 | 600 | 2.282816 | TGGCGGGTTTGGGTCATG | 60.283 | 61.111 | 0.00 | 0.00 | 0.00 | 3.07 |
600 | 601 | 2.034999 | GGCGGGTTTGGGTCATGA | 59.965 | 61.111 | 0.00 | 0.00 | 0.00 | 3.07 |
601 | 602 | 2.046285 | GGCGGGTTTGGGTCATGAG | 61.046 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
602 | 603 | 2.046285 | GCGGGTTTGGGTCATGAGG | 61.046 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
603 | 604 | 2.046285 | CGGGTTTGGGTCATGAGGC | 61.046 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
604 | 605 | 1.076549 | GGGTTTGGGTCATGAGGCA | 59.923 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
605 | 606 | 0.967380 | GGGTTTGGGTCATGAGGCAG | 60.967 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
606 | 607 | 0.967380 | GGTTTGGGTCATGAGGCAGG | 60.967 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
607 | 608 | 1.304381 | TTTGGGTCATGAGGCAGGC | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
608 | 609 | 2.079088 | TTTGGGTCATGAGGCAGGCA | 62.079 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
609 | 610 | 2.124403 | GGGTCATGAGGCAGGCAG | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
610 | 611 | 2.124403 | GGTCATGAGGCAGGCAGG | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
611 | 612 | 2.124403 | GTCATGAGGCAGGCAGGG | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
612 | 613 | 4.119363 | TCATGAGGCAGGCAGGGC | 62.119 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
668 | 669 | 3.470888 | CGGCGGAGGAAGTGGGAT | 61.471 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
669 | 670 | 2.131709 | CGGCGGAGGAAGTGGGATA | 61.132 | 63.158 | 0.00 | 0.00 | 0.00 | 2.59 |
670 | 671 | 1.472662 | CGGCGGAGGAAGTGGGATAT | 61.473 | 60.000 | 0.00 | 0.00 | 0.00 | 1.63 |
671 | 672 | 0.035458 | GGCGGAGGAAGTGGGATATG | 59.965 | 60.000 | 0.00 | 0.00 | 0.00 | 1.78 |
672 | 673 | 1.048601 | GCGGAGGAAGTGGGATATGA | 58.951 | 55.000 | 0.00 | 0.00 | 0.00 | 2.15 |
673 | 674 | 1.001406 | GCGGAGGAAGTGGGATATGAG | 59.999 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
674 | 675 | 1.620819 | CGGAGGAAGTGGGATATGAGG | 59.379 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
675 | 676 | 1.981495 | GGAGGAAGTGGGATATGAGGG | 59.019 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
676 | 677 | 2.427889 | GGAGGAAGTGGGATATGAGGGA | 60.428 | 54.545 | 0.00 | 0.00 | 0.00 | 4.20 |
677 | 678 | 3.318313 | GAGGAAGTGGGATATGAGGGAA | 58.682 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
678 | 679 | 3.716872 | GAGGAAGTGGGATATGAGGGAAA | 59.283 | 47.826 | 0.00 | 0.00 | 0.00 | 3.13 |
679 | 680 | 3.718956 | AGGAAGTGGGATATGAGGGAAAG | 59.281 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
680 | 681 | 3.716872 | GGAAGTGGGATATGAGGGAAAGA | 59.283 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
681 | 682 | 4.202409 | GGAAGTGGGATATGAGGGAAAGAG | 60.202 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
682 | 683 | 4.286813 | AGTGGGATATGAGGGAAAGAGA | 57.713 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
683 | 684 | 4.635473 | AGTGGGATATGAGGGAAAGAGAA | 58.365 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
684 | 685 | 5.039645 | AGTGGGATATGAGGGAAAGAGAAA | 58.960 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
685 | 686 | 5.492524 | AGTGGGATATGAGGGAAAGAGAAAA | 59.507 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
686 | 687 | 5.825151 | GTGGGATATGAGGGAAAGAGAAAAG | 59.175 | 44.000 | 0.00 | 0.00 | 0.00 | 2.27 |
687 | 688 | 5.103940 | TGGGATATGAGGGAAAGAGAAAAGG | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 3.11 |
688 | 689 | 5.380900 | GGATATGAGGGAAAGAGAAAAGGG | 58.619 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
689 | 690 | 5.103898 | GGATATGAGGGAAAGAGAAAAGGGT | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 4.34 |
690 | 691 | 4.749048 | ATGAGGGAAAGAGAAAAGGGTT | 57.251 | 40.909 | 0.00 | 0.00 | 0.00 | 4.11 |
691 | 692 | 4.100279 | TGAGGGAAAGAGAAAAGGGTTC | 57.900 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
692 | 693 | 3.461831 | TGAGGGAAAGAGAAAAGGGTTCA | 59.538 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
693 | 694 | 4.106341 | TGAGGGAAAGAGAAAAGGGTTCAT | 59.894 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
694 | 695 | 4.667573 | AGGGAAAGAGAAAAGGGTTCATC | 58.332 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
695 | 696 | 3.440522 | GGGAAAGAGAAAAGGGTTCATCG | 59.559 | 47.826 | 0.00 | 0.00 | 0.00 | 3.84 |
696 | 697 | 4.324267 | GGAAAGAGAAAAGGGTTCATCGA | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
697 | 698 | 4.393371 | GGAAAGAGAAAAGGGTTCATCGAG | 59.607 | 45.833 | 0.00 | 0.00 | 0.00 | 4.04 |
698 | 699 | 4.891992 | AAGAGAAAAGGGTTCATCGAGA | 57.108 | 40.909 | 0.00 | 0.00 | 0.00 | 4.04 |
699 | 700 | 4.464069 | AGAGAAAAGGGTTCATCGAGAG | 57.536 | 45.455 | 0.00 | 0.00 | 0.00 | 3.20 |
700 | 701 | 3.196685 | AGAGAAAAGGGTTCATCGAGAGG | 59.803 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
701 | 702 | 3.173965 | AGAAAAGGGTTCATCGAGAGGA | 58.826 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
702 | 703 | 3.196685 | AGAAAAGGGTTCATCGAGAGGAG | 59.803 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
703 | 704 | 1.490574 | AAGGGTTCATCGAGAGGAGG | 58.509 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
704 | 705 | 0.397816 | AGGGTTCATCGAGAGGAGGG | 60.398 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
705 | 706 | 1.403687 | GGGTTCATCGAGAGGAGGGG | 61.404 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
706 | 707 | 1.443828 | GTTCATCGAGAGGAGGGGC | 59.556 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
707 | 708 | 2.127869 | TTCATCGAGAGGAGGGGCG | 61.128 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
708 | 709 | 2.519541 | CATCGAGAGGAGGGGCGA | 60.520 | 66.667 | 0.00 | 0.00 | 37.17 | 5.54 |
709 | 710 | 2.203422 | ATCGAGAGGAGGGGCGAG | 60.203 | 66.667 | 0.00 | 0.00 | 36.12 | 5.03 |
710 | 711 | 2.758207 | ATCGAGAGGAGGGGCGAGA | 61.758 | 63.158 | 0.00 | 0.00 | 36.12 | 4.04 |
711 | 712 | 2.690653 | ATCGAGAGGAGGGGCGAGAG | 62.691 | 65.000 | 0.00 | 0.00 | 36.12 | 3.20 |
712 | 713 | 2.520741 | GAGAGGAGGGGCGAGAGG | 60.521 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
713 | 714 | 3.024356 | AGAGGAGGGGCGAGAGGA | 61.024 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
714 | 715 | 2.520741 | GAGGAGGGGCGAGAGGAG | 60.521 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
715 | 716 | 4.851214 | AGGAGGGGCGAGAGGAGC | 62.851 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
724 | 725 | 3.800863 | GAGAGGAGCGTGCGTCGA | 61.801 | 66.667 | 0.00 | 0.00 | 42.86 | 4.20 |
725 | 726 | 3.726631 | GAGAGGAGCGTGCGTCGAG | 62.727 | 68.421 | 0.00 | 0.00 | 42.86 | 4.04 |
726 | 727 | 4.838486 | GAGGAGCGTGCGTCGAGG | 62.838 | 72.222 | 0.00 | 0.00 | 42.86 | 4.63 |
740 | 741 | 3.771978 | GAGGGGATCGAGAGGAGC | 58.228 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
746 | 747 | 3.737702 | GATCGAGAGGAGCCTAGGT | 57.262 | 57.895 | 11.31 | 0.00 | 0.00 | 3.08 |
747 | 748 | 1.989706 | GATCGAGAGGAGCCTAGGTT | 58.010 | 55.000 | 11.31 | 3.54 | 0.00 | 3.50 |
748 | 749 | 2.312390 | GATCGAGAGGAGCCTAGGTTT | 58.688 | 52.381 | 11.31 | 0.00 | 0.00 | 3.27 |
749 | 750 | 2.233305 | TCGAGAGGAGCCTAGGTTTT | 57.767 | 50.000 | 11.31 | 0.00 | 0.00 | 2.43 |
750 | 751 | 2.537143 | TCGAGAGGAGCCTAGGTTTTT | 58.463 | 47.619 | 11.31 | 0.00 | 0.00 | 1.94 |
766 | 767 | 2.721945 | TTTTTAGTGCGTGGGGTGG | 58.278 | 52.632 | 0.00 | 0.00 | 0.00 | 4.61 |
767 | 768 | 0.824182 | TTTTTAGTGCGTGGGGTGGG | 60.824 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
768 | 769 | 1.706995 | TTTTAGTGCGTGGGGTGGGA | 61.707 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
769 | 770 | 2.400269 | TTTAGTGCGTGGGGTGGGAC | 62.400 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
771 | 772 | 4.572571 | GTGCGTGGGGTGGGACAA | 62.573 | 66.667 | 0.00 | 0.00 | 44.16 | 3.18 |
772 | 773 | 3.810188 | TGCGTGGGGTGGGACAAA | 61.810 | 61.111 | 0.00 | 0.00 | 44.16 | 2.83 |
773 | 774 | 2.519780 | GCGTGGGGTGGGACAAAA | 60.520 | 61.111 | 0.00 | 0.00 | 44.16 | 2.44 |
774 | 775 | 2.128507 | GCGTGGGGTGGGACAAAAA | 61.129 | 57.895 | 0.00 | 0.00 | 44.16 | 1.94 |
775 | 776 | 1.468506 | GCGTGGGGTGGGACAAAAAT | 61.469 | 55.000 | 0.00 | 0.00 | 44.16 | 1.82 |
776 | 777 | 1.912417 | CGTGGGGTGGGACAAAAATA | 58.088 | 50.000 | 0.00 | 0.00 | 44.16 | 1.40 |
777 | 778 | 2.240279 | CGTGGGGTGGGACAAAAATAA | 58.760 | 47.619 | 0.00 | 0.00 | 44.16 | 1.40 |
778 | 779 | 2.029739 | CGTGGGGTGGGACAAAAATAAC | 60.030 | 50.000 | 0.00 | 0.00 | 44.16 | 1.89 |
779 | 780 | 2.300723 | GTGGGGTGGGACAAAAATAACC | 59.699 | 50.000 | 0.00 | 0.00 | 44.16 | 2.85 |
780 | 781 | 2.090719 | TGGGGTGGGACAAAAATAACCA | 60.091 | 45.455 | 0.00 | 0.00 | 44.16 | 3.67 |
781 | 782 | 2.565391 | GGGGTGGGACAAAAATAACCAG | 59.435 | 50.000 | 0.00 | 0.00 | 44.16 | 4.00 |
782 | 783 | 2.028476 | GGGTGGGACAAAAATAACCAGC | 60.028 | 50.000 | 0.00 | 0.00 | 44.16 | 4.85 |
783 | 784 | 2.352323 | GGTGGGACAAAAATAACCAGCG | 60.352 | 50.000 | 0.00 | 0.00 | 44.16 | 5.18 |
784 | 785 | 2.554893 | GTGGGACAAAAATAACCAGCGA | 59.445 | 45.455 | 0.00 | 0.00 | 44.16 | 4.93 |
785 | 786 | 3.004944 | GTGGGACAAAAATAACCAGCGAA | 59.995 | 43.478 | 0.00 | 0.00 | 44.16 | 4.70 |
786 | 787 | 3.637229 | TGGGACAAAAATAACCAGCGAAA | 59.363 | 39.130 | 0.00 | 0.00 | 31.92 | 3.46 |
787 | 788 | 4.099573 | TGGGACAAAAATAACCAGCGAAAA | 59.900 | 37.500 | 0.00 | 0.00 | 31.92 | 2.29 |
788 | 789 | 5.051153 | GGGACAAAAATAACCAGCGAAAAA | 58.949 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
806 | 807 | 3.581265 | AAAAACCCGGAAGAAGTACCA | 57.419 | 42.857 | 0.73 | 0.00 | 0.00 | 3.25 |
807 | 808 | 3.801307 | AAAACCCGGAAGAAGTACCAT | 57.199 | 42.857 | 0.73 | 0.00 | 0.00 | 3.55 |
808 | 809 | 4.914177 | AAAACCCGGAAGAAGTACCATA | 57.086 | 40.909 | 0.73 | 0.00 | 0.00 | 2.74 |
809 | 810 | 4.482952 | AAACCCGGAAGAAGTACCATAG | 57.517 | 45.455 | 0.73 | 0.00 | 0.00 | 2.23 |
810 | 811 | 3.393426 | ACCCGGAAGAAGTACCATAGA | 57.607 | 47.619 | 0.73 | 0.00 | 0.00 | 1.98 |
811 | 812 | 3.716431 | ACCCGGAAGAAGTACCATAGAA | 58.284 | 45.455 | 0.73 | 0.00 | 0.00 | 2.10 |
812 | 813 | 3.705072 | ACCCGGAAGAAGTACCATAGAAG | 59.295 | 47.826 | 0.73 | 0.00 | 0.00 | 2.85 |
813 | 814 | 3.705072 | CCCGGAAGAAGTACCATAGAAGT | 59.295 | 47.826 | 0.73 | 0.00 | 0.00 | 3.01 |
814 | 815 | 4.891756 | CCCGGAAGAAGTACCATAGAAGTA | 59.108 | 45.833 | 0.73 | 0.00 | 0.00 | 2.24 |
815 | 816 | 5.221204 | CCCGGAAGAAGTACCATAGAAGTAC | 60.221 | 48.000 | 0.73 | 0.00 | 40.34 | 2.73 |
816 | 817 | 5.221204 | CCGGAAGAAGTACCATAGAAGTACC | 60.221 | 48.000 | 0.00 | 0.00 | 40.83 | 3.34 |
817 | 818 | 5.359009 | CGGAAGAAGTACCATAGAAGTACCA | 59.641 | 44.000 | 0.00 | 0.00 | 40.83 | 3.25 |
818 | 819 | 6.127535 | CGGAAGAAGTACCATAGAAGTACCAA | 60.128 | 42.308 | 0.00 | 0.00 | 40.83 | 3.67 |
819 | 820 | 7.578189 | CGGAAGAAGTACCATAGAAGTACCAAA | 60.578 | 40.741 | 0.00 | 0.00 | 40.83 | 3.28 |
820 | 821 | 8.098912 | GGAAGAAGTACCATAGAAGTACCAAAA | 58.901 | 37.037 | 0.00 | 0.00 | 40.83 | 2.44 |
821 | 822 | 9.498176 | GAAGAAGTACCATAGAAGTACCAAAAA | 57.502 | 33.333 | 0.00 | 0.00 | 40.83 | 1.94 |
835 | 836 | 2.931921 | AAAAAGGCCGGGTGAGGT | 59.068 | 55.556 | 2.18 | 0.00 | 0.00 | 3.85 |
836 | 837 | 1.530655 | AAAAAGGCCGGGTGAGGTG | 60.531 | 57.895 | 2.18 | 0.00 | 0.00 | 4.00 |
837 | 838 | 2.994643 | AAAAAGGCCGGGTGAGGTGG | 62.995 | 60.000 | 2.18 | 0.00 | 0.00 | 4.61 |
843 | 844 | 3.307906 | CGGGTGAGGTGGGACGAA | 61.308 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
844 | 845 | 2.874664 | CGGGTGAGGTGGGACGAAA | 61.875 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
845 | 846 | 1.452801 | GGGTGAGGTGGGACGAAAA | 59.547 | 57.895 | 0.00 | 0.00 | 0.00 | 2.29 |
846 | 847 | 0.037734 | GGGTGAGGTGGGACGAAAAT | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 1.82 |
847 | 848 | 1.279846 | GGGTGAGGTGGGACGAAAATA | 59.720 | 52.381 | 0.00 | 0.00 | 0.00 | 1.40 |
848 | 849 | 2.290450 | GGGTGAGGTGGGACGAAAATAA | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
849 | 850 | 3.414269 | GGTGAGGTGGGACGAAAATAAA | 58.586 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
850 | 851 | 3.822167 | GGTGAGGTGGGACGAAAATAAAA | 59.178 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
851 | 852 | 4.320714 | GGTGAGGTGGGACGAAAATAAAAC | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
852 | 853 | 3.822167 | TGAGGTGGGACGAAAATAAAACC | 59.178 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
853 | 854 | 3.159472 | AGGTGGGACGAAAATAAAACCC | 58.841 | 45.455 | 0.00 | 0.00 | 37.99 | 4.11 |
854 | 855 | 2.095110 | GGTGGGACGAAAATAAAACCCG | 60.095 | 50.000 | 0.00 | 0.00 | 40.08 | 5.28 |
855 | 856 | 2.095110 | GTGGGACGAAAATAAAACCCGG | 60.095 | 50.000 | 0.00 | 0.00 | 40.08 | 5.73 |
856 | 857 | 2.224719 | TGGGACGAAAATAAAACCCGGA | 60.225 | 45.455 | 0.73 | 0.00 | 40.08 | 5.14 |
857 | 858 | 3.018856 | GGGACGAAAATAAAACCCGGAT | 58.981 | 45.455 | 0.73 | 0.00 | 0.00 | 4.18 |
858 | 859 | 3.065786 | GGGACGAAAATAAAACCCGGATC | 59.934 | 47.826 | 0.73 | 0.00 | 0.00 | 3.36 |
859 | 860 | 3.242511 | GGACGAAAATAAAACCCGGATCG | 60.243 | 47.826 | 0.73 | 1.14 | 35.36 | 3.69 |
860 | 861 | 2.096335 | ACGAAAATAAAACCCGGATCGC | 59.904 | 45.455 | 0.73 | 0.00 | 32.68 | 4.58 |
861 | 862 | 2.711885 | GAAAATAAAACCCGGATCGCG | 58.288 | 47.619 | 0.73 | 0.00 | 0.00 | 5.87 |
862 | 863 | 2.027003 | AAATAAAACCCGGATCGCGA | 57.973 | 45.000 | 13.09 | 13.09 | 0.00 | 5.87 |
863 | 864 | 1.292992 | AATAAAACCCGGATCGCGAC | 58.707 | 50.000 | 12.93 | 5.43 | 0.00 | 5.19 |
864 | 865 | 0.531311 | ATAAAACCCGGATCGCGACC | 60.531 | 55.000 | 12.93 | 14.38 | 0.00 | 4.79 |
865 | 866 | 1.606885 | TAAAACCCGGATCGCGACCT | 61.607 | 55.000 | 12.93 | 0.00 | 0.00 | 3.85 |
866 | 867 | 1.606885 | AAAACCCGGATCGCGACCTA | 61.607 | 55.000 | 12.93 | 0.00 | 0.00 | 3.08 |
867 | 868 | 2.288788 | AAACCCGGATCGCGACCTAC | 62.289 | 60.000 | 12.93 | 0.00 | 0.00 | 3.18 |
868 | 869 | 3.974757 | CCCGGATCGCGACCTACC | 61.975 | 72.222 | 12.93 | 12.07 | 0.00 | 3.18 |
869 | 870 | 3.214123 | CCGGATCGCGACCTACCA | 61.214 | 66.667 | 12.93 | 0.00 | 0.00 | 3.25 |
870 | 871 | 2.025727 | CGGATCGCGACCTACCAC | 59.974 | 66.667 | 12.93 | 0.00 | 0.00 | 4.16 |
871 | 872 | 2.416260 | GGATCGCGACCTACCACC | 59.584 | 66.667 | 12.93 | 2.81 | 0.00 | 4.61 |
872 | 873 | 2.125961 | GGATCGCGACCTACCACCT | 61.126 | 63.158 | 12.93 | 0.00 | 0.00 | 4.00 |
873 | 874 | 1.065928 | GATCGCGACCTACCACCTG | 59.934 | 63.158 | 12.93 | 0.00 | 0.00 | 4.00 |
874 | 875 | 1.379443 | ATCGCGACCTACCACCTGA | 60.379 | 57.895 | 12.93 | 0.00 | 0.00 | 3.86 |
875 | 876 | 1.384989 | ATCGCGACCTACCACCTGAG | 61.385 | 60.000 | 12.93 | 0.00 | 0.00 | 3.35 |
876 | 877 | 2.044555 | CGCGACCTACCACCTGAGA | 61.045 | 63.158 | 0.00 | 0.00 | 0.00 | 3.27 |
877 | 878 | 1.511768 | GCGACCTACCACCTGAGAC | 59.488 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
878 | 879 | 1.248785 | GCGACCTACCACCTGAGACA | 61.249 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
879 | 880 | 1.475403 | CGACCTACCACCTGAGACAT | 58.525 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
880 | 881 | 1.825474 | CGACCTACCACCTGAGACATT | 59.175 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
881 | 882 | 2.417379 | CGACCTACCACCTGAGACATTG | 60.417 | 54.545 | 0.00 | 0.00 | 0.00 | 2.82 |
882 | 883 | 2.832129 | GACCTACCACCTGAGACATTGA | 59.168 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
883 | 884 | 2.834549 | ACCTACCACCTGAGACATTGAG | 59.165 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
884 | 885 | 3.099905 | CCTACCACCTGAGACATTGAGA | 58.900 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
885 | 886 | 3.131933 | CCTACCACCTGAGACATTGAGAG | 59.868 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
886 | 887 | 2.614259 | ACCACCTGAGACATTGAGAGT | 58.386 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
887 | 888 | 3.779444 | ACCACCTGAGACATTGAGAGTA | 58.221 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
888 | 889 | 3.766591 | ACCACCTGAGACATTGAGAGTAG | 59.233 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
889 | 890 | 4.019858 | CCACCTGAGACATTGAGAGTAGA | 58.980 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
890 | 891 | 4.097741 | CCACCTGAGACATTGAGAGTAGAG | 59.902 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
891 | 892 | 4.946772 | CACCTGAGACATTGAGAGTAGAGA | 59.053 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
892 | 893 | 5.593909 | CACCTGAGACATTGAGAGTAGAGAT | 59.406 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
893 | 894 | 5.593909 | ACCTGAGACATTGAGAGTAGAGATG | 59.406 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
894 | 895 | 5.507817 | CCTGAGACATTGAGAGTAGAGATGC | 60.508 | 48.000 | 0.00 | 0.00 | 0.00 | 3.91 |
895 | 896 | 4.340666 | TGAGACATTGAGAGTAGAGATGCC | 59.659 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
896 | 897 | 3.317711 | AGACATTGAGAGTAGAGATGCCG | 59.682 | 47.826 | 0.00 | 0.00 | 0.00 | 5.69 |
897 | 898 | 3.291584 | ACATTGAGAGTAGAGATGCCGA | 58.708 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
898 | 899 | 3.067461 | ACATTGAGAGTAGAGATGCCGAC | 59.933 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
899 | 900 | 2.420058 | TGAGAGTAGAGATGCCGACA | 57.580 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
900 | 901 | 2.017782 | TGAGAGTAGAGATGCCGACAC | 58.982 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
901 | 902 | 1.003331 | GAGAGTAGAGATGCCGACACG | 60.003 | 57.143 | 0.00 | 0.00 | 0.00 | 4.49 |
902 | 903 | 0.592754 | GAGTAGAGATGCCGACACGC | 60.593 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
903 | 904 | 1.032657 | AGTAGAGATGCCGACACGCT | 61.033 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
904 | 905 | 0.661552 | GTAGAGATGCCGACACGCTA | 59.338 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
905 | 906 | 0.661552 | TAGAGATGCCGACACGCTAC | 59.338 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
906 | 907 | 1.032657 | AGAGATGCCGACACGCTACT | 61.033 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
907 | 908 | 0.179134 | GAGATGCCGACACGCTACTT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
908 | 909 | 0.179134 | AGATGCCGACACGCTACTTC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
909 | 910 | 1.472276 | GATGCCGACACGCTACTTCG | 61.472 | 60.000 | 0.00 | 0.00 | 0.00 | 3.79 |
911 | 912 | 2.879462 | CCGACACGCTACTTCGGC | 60.879 | 66.667 | 0.00 | 0.00 | 45.35 | 5.54 |
912 | 913 | 2.178521 | CGACACGCTACTTCGGCT | 59.821 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
913 | 914 | 2.152699 | CGACACGCTACTTCGGCTG | 61.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
914 | 915 | 1.211969 | GACACGCTACTTCGGCTGA | 59.788 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
915 | 916 | 0.798771 | GACACGCTACTTCGGCTGAG | 60.799 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
916 | 917 | 1.213013 | CACGCTACTTCGGCTGAGT | 59.787 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
917 | 918 | 0.388649 | CACGCTACTTCGGCTGAGTT | 60.389 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
918 | 919 | 1.135489 | CACGCTACTTCGGCTGAGTTA | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
919 | 920 | 1.132643 | ACGCTACTTCGGCTGAGTTAG | 59.867 | 52.381 | 0.00 | 1.82 | 0.00 | 2.34 |
920 | 921 | 1.400846 | CGCTACTTCGGCTGAGTTAGA | 59.599 | 52.381 | 14.00 | 0.00 | 0.00 | 2.10 |
921 | 922 | 2.033550 | CGCTACTTCGGCTGAGTTAGAT | 59.966 | 50.000 | 14.00 | 0.00 | 0.00 | 1.98 |
934 | 935 | 6.292150 | GCTGAGTTAGATATAAAAGCCCAGT | 58.708 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
946 | 947 | 3.054503 | CCCAGTCGTCGTCCGTCT | 61.055 | 66.667 | 0.00 | 0.00 | 37.94 | 4.18 |
947 | 948 | 1.742880 | CCCAGTCGTCGTCCGTCTA | 60.743 | 63.158 | 0.00 | 0.00 | 33.14 | 2.59 |
948 | 949 | 1.300971 | CCCAGTCGTCGTCCGTCTAA | 61.301 | 60.000 | 0.00 | 0.00 | 33.14 | 2.10 |
949 | 950 | 0.731417 | CCAGTCGTCGTCCGTCTAAT | 59.269 | 55.000 | 0.00 | 0.00 | 33.14 | 1.73 |
950 | 951 | 1.267932 | CCAGTCGTCGTCCGTCTAATC | 60.268 | 57.143 | 0.00 | 0.00 | 33.14 | 1.75 |
971 | 972 | 6.824305 | ATCCAGTCAATCGAACAAGAAATT | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1179 | 1211 | 3.047877 | GACCCGTCGCCCTTGTTG | 61.048 | 66.667 | 0.00 | 0.00 | 0.00 | 3.33 |
1362 | 1394 | 3.584403 | GAGGCCATCCCCATCCCC | 61.584 | 72.222 | 5.01 | 0.00 | 0.00 | 4.81 |
1365 | 1397 | 3.498071 | GCCATCCCCATCCCCGAA | 61.498 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1404 | 1436 | 3.695060 | AGGACAACGTCTCGATACAGATT | 59.305 | 43.478 | 1.64 | 0.00 | 32.47 | 2.40 |
1443 | 1488 | 5.388890 | CGTCAAGGTTCTTCTCTTTTCGATG | 60.389 | 44.000 | 0.00 | 0.00 | 0.00 | 3.84 |
1460 | 1536 | 6.755461 | TTCGATGCTTCTCTAATTCGAATC | 57.245 | 37.500 | 11.83 | 0.00 | 39.73 | 2.52 |
1479 | 1579 | 6.988580 | TCGAATCTAGTAGTATCGGTTTCTCA | 59.011 | 38.462 | 19.70 | 4.23 | 34.47 | 3.27 |
1523 | 1639 | 4.439837 | CCATCTATGATGCAGATCGTCGAT | 60.440 | 45.833 | 7.63 | 7.63 | 32.69 | 3.59 |
1526 | 1642 | 1.322442 | TGATGCAGATCGTCGATCCT | 58.678 | 50.000 | 27.43 | 14.55 | 39.66 | 3.24 |
1528 | 1644 | 2.057316 | GATGCAGATCGTCGATCCTTG | 58.943 | 52.381 | 27.43 | 21.43 | 39.66 | 3.61 |
1574 | 1690 | 2.290134 | CCCCATCTATGCTGTCATCCAG | 60.290 | 54.545 | 0.00 | 0.00 | 44.53 | 3.86 |
1611 | 1727 | 1.202806 | TGAGGAGTGAACTTGGCAAGG | 60.203 | 52.381 | 29.26 | 12.82 | 0.00 | 3.61 |
1723 | 1852 | 5.003804 | TCTTAGCAAAGAATCTTGGGTCAC | 58.996 | 41.667 | 5.22 | 0.00 | 38.81 | 3.67 |
1735 | 1864 | 3.580895 | TCTTGGGTCACTTAGTGCATACA | 59.419 | 43.478 | 7.61 | 1.50 | 32.98 | 2.29 |
1873 | 2181 | 3.005554 | ACAGAAGTCAATCAATGAGGCG | 58.994 | 45.455 | 0.00 | 0.00 | 39.19 | 5.52 |
1879 | 2187 | 1.134007 | TCAATCAATGAGGCGGCAGAT | 60.134 | 47.619 | 13.08 | 3.43 | 33.04 | 2.90 |
1922 | 2230 | 7.219535 | GTCTTCGCTACGAAATCAGTATGTTTA | 59.780 | 37.037 | 3.84 | 0.00 | 45.23 | 2.01 |
1979 | 2303 | 2.046023 | TGGCTGAGCGTTCATGGG | 60.046 | 61.111 | 1.26 | 0.00 | 31.68 | 4.00 |
2050 | 2375 | 1.573108 | GGGACATCACTCCTCCAGAA | 58.427 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2143 | 2479 | 6.574350 | TGAAGGTAGCTTTTACTATGCTCTC | 58.426 | 40.000 | 8.87 | 0.00 | 38.19 | 3.20 |
2147 | 2483 | 5.986741 | GGTAGCTTTTACTATGCTCTCCTTC | 59.013 | 44.000 | 0.00 | 0.00 | 38.19 | 3.46 |
2231 | 2619 | 8.462016 | ACCTGACTAATGATAAAGTTGCAAATC | 58.538 | 33.333 | 0.00 | 0.70 | 0.00 | 2.17 |
2265 | 2657 | 2.612672 | CTGACTGATGCTGCCAACTATG | 59.387 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2282 | 2674 | 8.893727 | GCCAACTATGTAGTGTTAGATTTCATT | 58.106 | 33.333 | 0.00 | 0.00 | 36.50 | 2.57 |
2334 | 2735 | 9.339492 | ACAACATTTTGTTTTTAAATTGCACAG | 57.661 | 25.926 | 0.00 | 0.00 | 43.89 | 3.66 |
2354 | 2773 | 2.307098 | AGTGAATCCTGCTTGCTACCTT | 59.693 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
2415 | 2861 | 9.742144 | TTGCAAACTAATAAATCCTGGTAACTA | 57.258 | 29.630 | 0.00 | 0.00 | 37.61 | 2.24 |
2492 | 2938 | 7.517417 | GCCAAGTAGATAGTGTTCGATTTCATG | 60.517 | 40.741 | 0.00 | 0.00 | 0.00 | 3.07 |
2498 | 2944 | 4.271696 | AGTGTTCGATTTCATGAGACCA | 57.728 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
2499 | 2945 | 4.641396 | AGTGTTCGATTTCATGAGACCAA | 58.359 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
2568 | 3015 | 1.737236 | TGCGATGATAAGTTGCACACC | 59.263 | 47.619 | 0.00 | 0.00 | 31.22 | 4.16 |
2596 | 3043 | 3.064207 | TGCTTGCTACCTTAAGTTGACG | 58.936 | 45.455 | 0.97 | 0.00 | 0.00 | 4.35 |
2602 | 3049 | 2.165319 | ACCTTAAGTTGACGAGTGCC | 57.835 | 50.000 | 0.97 | 0.00 | 0.00 | 5.01 |
2611 | 3058 | 0.396435 | TGACGAGTGCCCTTGTTCAT | 59.604 | 50.000 | 0.00 | 0.00 | 35.34 | 2.57 |
2688 | 3146 | 7.573710 | TGTTGCCCATATAGTGTTAGATTTCT | 58.426 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2886 | 3407 | 8.079203 | CAGAGTACTATACTTCTTGTATGCTGG | 58.921 | 40.741 | 0.00 | 0.00 | 41.55 | 4.85 |
2980 | 3611 | 8.942338 | TTCTTATCCATGTGAACATACTACAC | 57.058 | 34.615 | 0.00 | 0.00 | 34.26 | 2.90 |
3001 | 3632 | 1.083806 | TGCTGTATGCTGCTACGTGC | 61.084 | 55.000 | 13.40 | 0.00 | 43.37 | 5.34 |
3014 | 3645 | 2.286294 | GCTACGTGCATCATTTGAGGAG | 59.714 | 50.000 | 0.00 | 0.00 | 42.31 | 3.69 |
3019 | 3650 | 2.883386 | GTGCATCATTTGAGGAGATCCC | 59.117 | 50.000 | 0.00 | 0.00 | 36.42 | 3.85 |
3049 | 3688 | 5.841237 | TCTGCCTTCTGCTATCTAACCTTAT | 59.159 | 40.000 | 0.00 | 0.00 | 42.00 | 1.73 |
3053 | 3692 | 7.834181 | TGCCTTCTGCTATCTAACCTTATTTTT | 59.166 | 33.333 | 0.00 | 0.00 | 42.00 | 1.94 |
3130 | 3771 | 9.942850 | CTTCCATTAAAAGTCAAATATTTGGGT | 57.057 | 29.630 | 24.40 | 11.71 | 38.66 | 4.51 |
3199 | 3842 | 5.893500 | TGTTCTCCCCTCTACCATATCTAG | 58.106 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
3276 | 3919 | 5.758924 | ACTTGTTCTTAATTTCGTTCTGCC | 58.241 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
3301 | 3944 | 7.703621 | CCTGCATGTATTTTTCCTCATTACTTG | 59.296 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
3363 | 4284 | 4.159377 | TGCTTGAAAACATTCGGCTTAG | 57.841 | 40.909 | 0.00 | 0.00 | 0.00 | 2.18 |
3364 | 4285 | 2.917343 | GCTTGAAAACATTCGGCTTAGC | 59.083 | 45.455 | 0.00 | 0.00 | 0.00 | 3.09 |
3365 | 4286 | 3.366374 | GCTTGAAAACATTCGGCTTAGCT | 60.366 | 43.478 | 3.59 | 0.00 | 0.00 | 3.32 |
3367 | 4288 | 4.159377 | TGAAAACATTCGGCTTAGCTTG | 57.841 | 40.909 | 3.59 | 0.00 | 0.00 | 4.01 |
3368 | 4289 | 3.568007 | TGAAAACATTCGGCTTAGCTTGT | 59.432 | 39.130 | 3.59 | 0.75 | 0.00 | 3.16 |
3562 | 4532 | 3.916761 | ACATGGCTGCTTGTAATTTGTG | 58.083 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
3695 | 4758 | 6.355405 | CGTTTGCTAGCTGATATGAATTTTCG | 59.645 | 38.462 | 17.23 | 0.34 | 0.00 | 3.46 |
3832 | 4905 | 4.277672 | ACGTACAAGCAGAAACTGACTCTA | 59.722 | 41.667 | 2.81 | 0.00 | 32.44 | 2.43 |
4125 | 9193 | 4.968719 | TGGTCTGTCTATATGAATGGGTGT | 59.031 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
4198 | 9269 | 7.818930 | ACAATGTTTTCAGCTTTTCTTCTCAAA | 59.181 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
4289 | 9361 | 0.242017 | GCTGCCTAAGTTGTGCAAGG | 59.758 | 55.000 | 0.00 | 0.00 | 34.06 | 3.61 |
4291 | 9363 | 1.956477 | CTGCCTAAGTTGTGCAAGGTT | 59.044 | 47.619 | 1.98 | 0.00 | 34.06 | 3.50 |
4292 | 9364 | 1.953686 | TGCCTAAGTTGTGCAAGGTTC | 59.046 | 47.619 | 1.98 | 0.00 | 30.85 | 3.62 |
4293 | 9365 | 1.069227 | GCCTAAGTTGTGCAAGGTTCG | 60.069 | 52.381 | 1.98 | 0.00 | 0.00 | 3.95 |
4343 | 9422 | 9.014297 | AGGAATGTAAGAAACTTGTAGATTTGG | 57.986 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
4358 | 9437 | 7.375834 | TGTAGATTTGGTTATCCTATACTGCG | 58.624 | 38.462 | 0.00 | 0.00 | 34.23 | 5.18 |
4380 | 9459 | 3.426568 | GCACGCTGCTGGGAGAAC | 61.427 | 66.667 | 14.63 | 0.00 | 40.96 | 3.01 |
4382 | 9461 | 1.376424 | CACGCTGCTGGGAGAACAT | 60.376 | 57.895 | 14.63 | 0.00 | 0.00 | 2.71 |
4428 | 9507 | 3.638316 | TCCGGGCGGCCTGTTTTA | 61.638 | 61.111 | 27.04 | 6.24 | 34.68 | 1.52 |
4429 | 9508 | 2.673687 | CCGGGCGGCCTGTTTTAA | 60.674 | 61.111 | 27.04 | 0.00 | 0.00 | 1.52 |
4430 | 9509 | 2.269529 | CCGGGCGGCCTGTTTTAAA | 61.270 | 57.895 | 27.04 | 0.00 | 0.00 | 1.52 |
4431 | 9510 | 1.660917 | CGGGCGGCCTGTTTTAAAA | 59.339 | 52.632 | 27.04 | 0.00 | 0.00 | 1.52 |
4432 | 9511 | 0.032267 | CGGGCGGCCTGTTTTAAAAA | 59.968 | 50.000 | 27.04 | 0.00 | 0.00 | 1.94 |
4433 | 9512 | 1.337354 | CGGGCGGCCTGTTTTAAAAAT | 60.337 | 47.619 | 27.04 | 0.00 | 0.00 | 1.82 |
4434 | 9513 | 2.773487 | GGGCGGCCTGTTTTAAAAATT | 58.227 | 42.857 | 22.87 | 0.00 | 0.00 | 1.82 |
4435 | 9514 | 2.739913 | GGGCGGCCTGTTTTAAAAATTC | 59.260 | 45.455 | 22.87 | 0.00 | 0.00 | 2.17 |
4436 | 9515 | 2.410392 | GGCGGCCTGTTTTAAAAATTCG | 59.590 | 45.455 | 12.87 | 4.51 | 0.00 | 3.34 |
4437 | 9516 | 3.054166 | GCGGCCTGTTTTAAAAATTCGT | 58.946 | 40.909 | 1.31 | 0.00 | 0.00 | 3.85 |
4438 | 9517 | 3.491639 | GCGGCCTGTTTTAAAAATTCGTT | 59.508 | 39.130 | 1.31 | 0.00 | 0.00 | 3.85 |
4439 | 9518 | 4.025563 | GCGGCCTGTTTTAAAAATTCGTTT | 60.026 | 37.500 | 1.31 | 0.00 | 0.00 | 3.60 |
4440 | 9519 | 5.502706 | GCGGCCTGTTTTAAAAATTCGTTTT | 60.503 | 36.000 | 1.31 | 0.00 | 42.24 | 2.43 |
4441 | 9520 | 6.479436 | CGGCCTGTTTTAAAAATTCGTTTTT | 58.521 | 32.000 | 1.31 | 4.55 | 40.07 | 1.94 |
4573 | 9652 | 9.766277 | TGTTTGCAATAAAAATTGTTTTCTCAC | 57.234 | 25.926 | 0.00 | 0.00 | 38.01 | 3.51 |
4574 | 9653 | 9.986833 | GTTTGCAATAAAAATTGTTTTCTCACT | 57.013 | 25.926 | 0.00 | 0.00 | 38.01 | 3.41 |
4576 | 9655 | 8.939201 | TGCAATAAAAATTGTTTTCTCACTCA | 57.061 | 26.923 | 0.00 | 0.00 | 38.01 | 3.41 |
4577 | 9656 | 9.376075 | TGCAATAAAAATTGTTTTCTCACTCAA | 57.624 | 25.926 | 0.00 | 0.00 | 38.01 | 3.02 |
4587 | 9666 | 6.027131 | TGTTTTCTCACTCAAAACATGTTCG | 58.973 | 36.000 | 12.39 | 6.59 | 44.82 | 3.95 |
4588 | 9667 | 6.128145 | TGTTTTCTCACTCAAAACATGTTCGA | 60.128 | 34.615 | 12.39 | 10.68 | 44.82 | 3.71 |
4589 | 9668 | 6.429791 | TTTCTCACTCAAAACATGTTCGAA | 57.570 | 33.333 | 12.39 | 0.00 | 0.00 | 3.71 |
4590 | 9669 | 6.429791 | TTCTCACTCAAAACATGTTCGAAA | 57.570 | 33.333 | 12.39 | 0.44 | 0.00 | 3.46 |
4591 | 9670 | 6.618287 | TCTCACTCAAAACATGTTCGAAAT | 57.382 | 33.333 | 12.39 | 0.71 | 0.00 | 2.17 |
4592 | 9671 | 7.026631 | TCTCACTCAAAACATGTTCGAAATT | 57.973 | 32.000 | 12.39 | 0.00 | 0.00 | 1.82 |
4593 | 9672 | 7.479980 | TCTCACTCAAAACATGTTCGAAATTT | 58.520 | 30.769 | 12.39 | 0.00 | 0.00 | 1.82 |
4594 | 9673 | 7.973388 | TCTCACTCAAAACATGTTCGAAATTTT | 59.027 | 29.630 | 12.39 | 2.31 | 0.00 | 1.82 |
4595 | 9674 | 8.114359 | TCACTCAAAACATGTTCGAAATTTTC | 57.886 | 30.769 | 12.39 | 0.00 | 0.00 | 2.29 |
4596 | 9675 | 7.757173 | TCACTCAAAACATGTTCGAAATTTTCA | 59.243 | 29.630 | 12.39 | 0.00 | 0.00 | 2.69 |
4597 | 9676 | 8.379161 | CACTCAAAACATGTTCGAAATTTTCAA | 58.621 | 29.630 | 12.39 | 1.02 | 0.00 | 2.69 |
4598 | 9677 | 8.930760 | ACTCAAAACATGTTCGAAATTTTCAAA | 58.069 | 25.926 | 12.39 | 0.00 | 0.00 | 2.69 |
4599 | 9678 | 9.752274 | CTCAAAACATGTTCGAAATTTTCAAAA | 57.248 | 25.926 | 12.39 | 0.76 | 0.00 | 2.44 |
4600 | 9679 | 9.535270 | TCAAAACATGTTCGAAATTTTCAAAAC | 57.465 | 25.926 | 12.39 | 11.93 | 0.00 | 2.43 |
4601 | 9680 | 9.322776 | CAAAACATGTTCGAAATTTTCAAAACA | 57.677 | 25.926 | 20.45 | 20.45 | 38.51 | 2.83 |
4602 | 9681 | 9.884465 | AAAACATGTTCGAAATTTTCAAAACAA | 57.116 | 22.222 | 21.36 | 11.55 | 38.02 | 2.83 |
4603 | 9682 | 9.884465 | AAACATGTTCGAAATTTTCAAAACAAA | 57.116 | 22.222 | 21.36 | 8.15 | 38.02 | 2.83 |
4604 | 9683 | 9.884465 | AACATGTTCGAAATTTTCAAAACAAAA | 57.116 | 22.222 | 21.36 | 7.66 | 38.02 | 2.44 |
4608 | 9687 | 9.334693 | TGTTCGAAATTTTCAAAACAAAATTGG | 57.665 | 25.926 | 17.85 | 2.17 | 42.55 | 3.16 |
4609 | 9688 | 8.793472 | GTTCGAAATTTTCAAAACAAAATTGGG | 58.207 | 29.630 | 0.00 | 1.90 | 42.55 | 4.12 |
4610 | 9689 | 6.969473 | TCGAAATTTTCAAAACAAAATTGGGC | 59.031 | 30.769 | 9.66 | 0.00 | 42.55 | 5.36 |
4611 | 9690 | 6.749118 | CGAAATTTTCAAAACAAAATTGGGCA | 59.251 | 30.769 | 9.66 | 0.00 | 42.55 | 5.36 |
4612 | 9691 | 7.274250 | CGAAATTTTCAAAACAAAATTGGGCAA | 59.726 | 29.630 | 9.66 | 0.00 | 42.55 | 4.52 |
4613 | 9692 | 7.824704 | AATTTTCAAAACAAAATTGGGCAAC | 57.175 | 28.000 | 3.65 | 0.00 | 42.04 | 4.17 |
4614 | 9693 | 5.964958 | TTTCAAAACAAAATTGGGCAACA | 57.035 | 30.435 | 0.00 | 0.00 | 39.74 | 3.33 |
4615 | 9694 | 5.964958 | TTCAAAACAAAATTGGGCAACAA | 57.035 | 30.435 | 0.00 | 0.00 | 44.54 | 2.83 |
4616 | 9695 | 5.964958 | TCAAAACAAAATTGGGCAACAAA | 57.035 | 30.435 | 0.00 | 0.00 | 43.46 | 2.83 |
4617 | 9696 | 6.331369 | TCAAAACAAAATTGGGCAACAAAA | 57.669 | 29.167 | 0.00 | 0.00 | 43.46 | 2.44 |
4618 | 9697 | 6.748132 | TCAAAACAAAATTGGGCAACAAAAA | 58.252 | 28.000 | 0.00 | 0.00 | 43.46 | 1.94 |
4645 | 9724 | 7.424227 | TCATGATTTTCCAAAAAGTTCATGC | 57.576 | 32.000 | 16.58 | 0.00 | 41.21 | 4.06 |
4646 | 9725 | 6.990939 | TCATGATTTTCCAAAAAGTTCATGCA | 59.009 | 30.769 | 16.58 | 0.00 | 41.21 | 3.96 |
4647 | 9726 | 6.601741 | TGATTTTCCAAAAAGTTCATGCAC | 57.398 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
4648 | 9727 | 6.347696 | TGATTTTCCAAAAAGTTCATGCACT | 58.652 | 32.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4649 | 9728 | 7.495901 | TGATTTTCCAAAAAGTTCATGCACTA | 58.504 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
4650 | 9729 | 7.984050 | TGATTTTCCAAAAAGTTCATGCACTAA | 59.016 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
4651 | 9730 | 8.729805 | ATTTTCCAAAAAGTTCATGCACTAAA | 57.270 | 26.923 | 0.00 | 0.00 | 0.00 | 1.85 |
4652 | 9731 | 8.553459 | TTTTCCAAAAAGTTCATGCACTAAAA | 57.447 | 26.923 | 0.00 | 0.00 | 0.00 | 1.52 |
4653 | 9732 | 8.553459 | TTTCCAAAAAGTTCATGCACTAAAAA | 57.447 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
4769 | 9848 | 8.732413 | TTATTCATTCATCAAATATTCGCTGC | 57.268 | 30.769 | 0.00 | 0.00 | 0.00 | 5.25 |
4770 | 9849 | 6.381481 | TTCATTCATCAAATATTCGCTGCT | 57.619 | 33.333 | 0.00 | 0.00 | 0.00 | 4.24 |
4771 | 9850 | 6.381481 | TCATTCATCAAATATTCGCTGCTT | 57.619 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
4772 | 9851 | 6.432936 | TCATTCATCAAATATTCGCTGCTTC | 58.567 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4773 | 9852 | 6.261603 | TCATTCATCAAATATTCGCTGCTTCT | 59.738 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
4774 | 9853 | 7.442062 | TCATTCATCAAATATTCGCTGCTTCTA | 59.558 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
4775 | 9854 | 7.552458 | TTCATCAAATATTCGCTGCTTCTAA | 57.448 | 32.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4776 | 9855 | 7.552458 | TCATCAAATATTCGCTGCTTCTAAA | 57.448 | 32.000 | 0.00 | 0.00 | 0.00 | 1.85 |
4777 | 9856 | 7.984391 | TCATCAAATATTCGCTGCTTCTAAAA | 58.016 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
4778 | 9857 | 8.458052 | TCATCAAATATTCGCTGCTTCTAAAAA | 58.542 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
4779 | 9858 | 9.241317 | CATCAAATATTCGCTGCTTCTAAAAAT | 57.759 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
4780 | 9859 | 8.619146 | TCAAATATTCGCTGCTTCTAAAAATG | 57.381 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
4781 | 9860 | 8.458052 | TCAAATATTCGCTGCTTCTAAAAATGA | 58.542 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4782 | 9861 | 9.075519 | CAAATATTCGCTGCTTCTAAAAATGAA | 57.924 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4783 | 9862 | 8.620533 | AATATTCGCTGCTTCTAAAAATGAAC | 57.379 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
4784 | 9863 | 5.431420 | TTCGCTGCTTCTAAAAATGAACA | 57.569 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
4785 | 9864 | 5.627499 | TCGCTGCTTCTAAAAATGAACAT | 57.373 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
4786 | 9865 | 5.393124 | TCGCTGCTTCTAAAAATGAACATG | 58.607 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
4787 | 9866 | 5.048782 | TCGCTGCTTCTAAAAATGAACATGT | 60.049 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4788 | 9867 | 6.148645 | TCGCTGCTTCTAAAAATGAACATGTA | 59.851 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
4789 | 9868 | 6.968904 | CGCTGCTTCTAAAAATGAACATGTAT | 59.031 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
4790 | 9869 | 7.485913 | CGCTGCTTCTAAAAATGAACATGTATT | 59.514 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
4791 | 9870 | 9.143631 | GCTGCTTCTAAAAATGAACATGTATTT | 57.856 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4835 | 9914 | 8.347729 | AGTAAAATGTTGGTGAATTTCGAAAC | 57.652 | 30.769 | 13.81 | 1.84 | 0.00 | 2.78 |
4836 | 9915 | 7.976734 | AGTAAAATGTTGGTGAATTTCGAAACA | 59.023 | 29.630 | 13.81 | 4.82 | 32.60 | 2.83 |
4837 | 9916 | 7.602517 | AAAATGTTGGTGAATTTCGAAACAA | 57.397 | 28.000 | 13.81 | 9.61 | 31.90 | 2.83 |
4838 | 9917 | 7.602517 | AAATGTTGGTGAATTTCGAAACAAA | 57.397 | 28.000 | 13.81 | 0.00 | 31.90 | 2.83 |
4839 | 9918 | 7.784633 | AATGTTGGTGAATTTCGAAACAAAT | 57.215 | 28.000 | 13.81 | 0.00 | 31.90 | 2.32 |
4840 | 9919 | 7.784633 | ATGTTGGTGAATTTCGAAACAAATT | 57.215 | 28.000 | 13.81 | 3.20 | 38.43 | 1.82 |
4841 | 9920 | 7.227992 | TGTTGGTGAATTTCGAAACAAATTC | 57.772 | 32.000 | 13.81 | 13.19 | 46.47 | 2.17 |
4842 | 9921 | 6.256757 | TGTTGGTGAATTTCGAAACAAATTCC | 59.743 | 34.615 | 13.81 | 11.32 | 46.03 | 3.01 |
4843 | 9922 | 5.907207 | TGGTGAATTTCGAAACAAATTCCA | 58.093 | 33.333 | 13.81 | 13.58 | 46.03 | 3.53 |
4844 | 9923 | 5.751028 | TGGTGAATTTCGAAACAAATTCCAC | 59.249 | 36.000 | 13.81 | 12.38 | 46.03 | 4.02 |
4845 | 9924 | 5.176774 | GGTGAATTTCGAAACAAATTCCACC | 59.823 | 40.000 | 13.81 | 16.49 | 46.03 | 4.61 |
4846 | 9925 | 5.751028 | GTGAATTTCGAAACAAATTCCACCA | 59.249 | 36.000 | 13.81 | 0.00 | 46.03 | 4.17 |
4847 | 9926 | 6.256757 | GTGAATTTCGAAACAAATTCCACCAA | 59.743 | 34.615 | 13.81 | 0.00 | 46.03 | 3.67 |
4848 | 9927 | 6.989169 | TGAATTTCGAAACAAATTCCACCAAT | 59.011 | 30.769 | 13.81 | 0.00 | 46.03 | 3.16 |
4849 | 9928 | 7.497249 | TGAATTTCGAAACAAATTCCACCAATT | 59.503 | 29.630 | 13.81 | 0.00 | 46.03 | 2.32 |
4850 | 9929 | 7.800155 | ATTTCGAAACAAATTCCACCAATTT | 57.200 | 28.000 | 13.81 | 0.00 | 44.25 | 1.82 |
4851 | 9930 | 6.836577 | TTCGAAACAAATTCCACCAATTTC | 57.163 | 33.333 | 0.00 | 0.00 | 41.94 | 2.17 |
4852 | 9931 | 5.293560 | TCGAAACAAATTCCACCAATTTCC | 58.706 | 37.500 | 0.00 | 0.00 | 41.94 | 3.13 |
4853 | 9932 | 5.053145 | CGAAACAAATTCCACCAATTTCCA | 58.947 | 37.500 | 0.00 | 0.00 | 41.94 | 3.53 |
4854 | 9933 | 5.177327 | CGAAACAAATTCCACCAATTTCCAG | 59.823 | 40.000 | 0.00 | 0.00 | 41.94 | 3.86 |
4855 | 9934 | 5.885449 | AACAAATTCCACCAATTTCCAGA | 57.115 | 34.783 | 0.00 | 0.00 | 41.94 | 3.86 |
4856 | 9935 | 5.885449 | ACAAATTCCACCAATTTCCAGAA | 57.115 | 34.783 | 0.00 | 0.00 | 41.94 | 3.02 |
4857 | 9936 | 6.245890 | ACAAATTCCACCAATTTCCAGAAA | 57.754 | 33.333 | 0.00 | 0.00 | 41.94 | 2.52 |
4858 | 9937 | 6.657875 | ACAAATTCCACCAATTTCCAGAAAA | 58.342 | 32.000 | 0.00 | 0.00 | 41.94 | 2.29 |
4859 | 9938 | 7.115414 | ACAAATTCCACCAATTTCCAGAAAAA | 58.885 | 30.769 | 0.00 | 0.00 | 41.94 | 1.94 |
4860 | 9939 | 7.779326 | ACAAATTCCACCAATTTCCAGAAAAAT | 59.221 | 29.630 | 0.00 | 0.00 | 41.94 | 1.82 |
4861 | 9940 | 7.748691 | AATTCCACCAATTTCCAGAAAAATG | 57.251 | 32.000 | 0.00 | 0.46 | 29.60 | 2.32 |
4862 | 9941 | 5.885449 | TCCACCAATTTCCAGAAAAATGT | 57.115 | 34.783 | 0.00 | 0.00 | 33.56 | 2.71 |
4863 | 9942 | 6.245890 | TCCACCAATTTCCAGAAAAATGTT | 57.754 | 33.333 | 0.00 | 0.00 | 33.56 | 2.71 |
4864 | 9943 | 6.287525 | TCCACCAATTTCCAGAAAAATGTTC | 58.712 | 36.000 | 0.00 | 0.00 | 33.56 | 3.18 |
4865 | 9944 | 6.054295 | CCACCAATTTCCAGAAAAATGTTCA | 58.946 | 36.000 | 0.00 | 0.00 | 33.56 | 3.18 |
4866 | 9945 | 6.711645 | CCACCAATTTCCAGAAAAATGTTCAT | 59.288 | 34.615 | 0.00 | 0.00 | 33.56 | 2.57 |
4867 | 9946 | 7.229106 | CCACCAATTTCCAGAAAAATGTTCATT | 59.771 | 33.333 | 0.00 | 0.00 | 33.56 | 2.57 |
4868 | 9947 | 8.071368 | CACCAATTTCCAGAAAAATGTTCATTG | 58.929 | 33.333 | 0.00 | 0.00 | 33.56 | 2.82 |
4869 | 9948 | 7.992033 | ACCAATTTCCAGAAAAATGTTCATTGA | 59.008 | 29.630 | 0.00 | 0.00 | 33.56 | 2.57 |
4870 | 9949 | 9.005777 | CCAATTTCCAGAAAAATGTTCATTGAT | 57.994 | 29.630 | 0.00 | 0.00 | 33.56 | 2.57 |
4876 | 9955 | 9.519191 | TCCAGAAAAATGTTCATTGATTCTAGA | 57.481 | 29.630 | 17.93 | 15.40 | 0.00 | 2.43 |
4887 | 9966 | 9.869844 | GTTCATTGATTCTAGAAATATTCACCG | 57.130 | 33.333 | 9.71 | 2.89 | 0.00 | 4.94 |
4888 | 9967 | 9.830975 | TTCATTGATTCTAGAAATATTCACCGA | 57.169 | 29.630 | 9.71 | 5.04 | 0.00 | 4.69 |
4892 | 9971 | 9.830975 | TTGATTCTAGAAATATTCACCGATTCA | 57.169 | 29.630 | 9.71 | 0.99 | 0.00 | 2.57 |
4893 | 9972 | 9.830975 | TGATTCTAGAAATATTCACCGATTCAA | 57.169 | 29.630 | 9.71 | 0.00 | 0.00 | 2.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 7.934855 | AAAGAGTGAATATGAGCAGTCAATT | 57.065 | 32.000 | 0.00 | 0.00 | 37.02 | 2.32 |
113 | 114 | 6.132791 | TCATTTACGCTTGGTTTGTTAACA | 57.867 | 33.333 | 3.59 | 3.59 | 35.92 | 2.41 |
474 | 475 | 1.298157 | TGCAAAATCCTCCGCTGTCG | 61.298 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
475 | 476 | 0.449388 | CTGCAAAATCCTCCGCTGTC | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
476 | 477 | 1.589716 | GCTGCAAAATCCTCCGCTGT | 61.590 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
477 | 478 | 1.138247 | GCTGCAAAATCCTCCGCTG | 59.862 | 57.895 | 0.00 | 0.00 | 0.00 | 5.18 |
478 | 479 | 1.001641 | AGCTGCAAAATCCTCCGCT | 60.002 | 52.632 | 1.02 | 0.00 | 0.00 | 5.52 |
479 | 480 | 1.138247 | CAGCTGCAAAATCCTCCGC | 59.862 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
480 | 481 | 1.138247 | GCAGCTGCAAAATCCTCCG | 59.862 | 57.895 | 33.36 | 0.00 | 41.59 | 4.63 |
481 | 482 | 1.138247 | CGCAGCTGCAAAATCCTCC | 59.862 | 57.895 | 36.03 | 5.05 | 42.21 | 4.30 |
482 | 483 | 1.138247 | CCGCAGCTGCAAAATCCTC | 59.862 | 57.895 | 36.03 | 5.81 | 42.21 | 3.71 |
483 | 484 | 2.998279 | GCCGCAGCTGCAAAATCCT | 61.998 | 57.895 | 36.03 | 0.00 | 42.21 | 3.24 |
484 | 485 | 2.507769 | GCCGCAGCTGCAAAATCC | 60.508 | 61.111 | 36.03 | 14.32 | 42.21 | 3.01 |
485 | 486 | 2.877582 | CGCCGCAGCTGCAAAATC | 60.878 | 61.111 | 36.03 | 18.56 | 42.21 | 2.17 |
486 | 487 | 3.364441 | TCGCCGCAGCTGCAAAAT | 61.364 | 55.556 | 36.03 | 0.00 | 42.21 | 1.82 |
487 | 488 | 4.326766 | GTCGCCGCAGCTGCAAAA | 62.327 | 61.111 | 36.03 | 16.79 | 42.21 | 2.44 |
500 | 501 | 3.918220 | CTTCGCTGCCATCGTCGC | 61.918 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
501 | 502 | 2.960957 | ATCCTTCGCTGCCATCGTCG | 62.961 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
502 | 503 | 0.811616 | AATCCTTCGCTGCCATCGTC | 60.812 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
503 | 504 | 0.392998 | AAATCCTTCGCTGCCATCGT | 60.393 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 |
532 | 533 | 4.796231 | GTGGATGCCGTCGACGCT | 62.796 | 66.667 | 31.73 | 18.07 | 38.18 | 5.07 |
536 | 537 | 4.077184 | GGGTGTGGATGCCGTCGA | 62.077 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
564 | 565 | 2.445654 | CCCCTCTGCCTCTCCCTC | 60.446 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
565 | 566 | 3.288381 | ACCCCTCTGCCTCTCCCT | 61.288 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
566 | 567 | 3.086600 | CACCCCTCTGCCTCTCCC | 61.087 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
567 | 568 | 3.086600 | CCACCCCTCTGCCTCTCC | 61.087 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
568 | 569 | 3.791586 | GCCACCCCTCTGCCTCTC | 61.792 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
574 | 575 | 3.966543 | AAACCCGCCACCCCTCTG | 61.967 | 66.667 | 0.00 | 0.00 | 0.00 | 3.35 |
575 | 576 | 3.966543 | CAAACCCGCCACCCCTCT | 61.967 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
580 | 581 | 3.879180 | ATGACCCAAACCCGCCACC | 62.879 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
581 | 582 | 2.282887 | ATGACCCAAACCCGCCAC | 60.283 | 61.111 | 0.00 | 0.00 | 0.00 | 5.01 |
582 | 583 | 2.282816 | CATGACCCAAACCCGCCA | 60.283 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
583 | 584 | 2.034999 | TCATGACCCAAACCCGCC | 59.965 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
584 | 585 | 2.046285 | CCTCATGACCCAAACCCGC | 61.046 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
585 | 586 | 2.046285 | GCCTCATGACCCAAACCCG | 61.046 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
586 | 587 | 0.967380 | CTGCCTCATGACCCAAACCC | 60.967 | 60.000 | 0.00 | 0.00 | 0.00 | 4.11 |
587 | 588 | 0.967380 | CCTGCCTCATGACCCAAACC | 60.967 | 60.000 | 0.00 | 0.00 | 0.00 | 3.27 |
588 | 589 | 1.598701 | GCCTGCCTCATGACCCAAAC | 61.599 | 60.000 | 0.00 | 0.00 | 0.00 | 2.93 |
589 | 590 | 1.304381 | GCCTGCCTCATGACCCAAA | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 3.28 |
590 | 591 | 2.356278 | GCCTGCCTCATGACCCAA | 59.644 | 61.111 | 0.00 | 0.00 | 0.00 | 4.12 |
591 | 592 | 2.934932 | TGCCTGCCTCATGACCCA | 60.935 | 61.111 | 0.00 | 0.00 | 0.00 | 4.51 |
592 | 593 | 2.124403 | CTGCCTGCCTCATGACCC | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
593 | 594 | 2.124403 | CCTGCCTGCCTCATGACC | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
594 | 595 | 2.124403 | CCCTGCCTGCCTCATGAC | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 3.06 |
595 | 596 | 4.119363 | GCCCTGCCTGCCTCATGA | 62.119 | 66.667 | 0.00 | 0.00 | 0.00 | 3.07 |
651 | 652 | 1.472662 | ATATCCCACTTCCTCCGCCG | 61.473 | 60.000 | 0.00 | 0.00 | 0.00 | 6.46 |
652 | 653 | 0.035458 | CATATCCCACTTCCTCCGCC | 59.965 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
653 | 654 | 1.001406 | CTCATATCCCACTTCCTCCGC | 59.999 | 57.143 | 0.00 | 0.00 | 0.00 | 5.54 |
654 | 655 | 1.620819 | CCTCATATCCCACTTCCTCCG | 59.379 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
655 | 656 | 1.981495 | CCCTCATATCCCACTTCCTCC | 59.019 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
656 | 657 | 2.977808 | TCCCTCATATCCCACTTCCTC | 58.022 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
657 | 658 | 3.438131 | TTCCCTCATATCCCACTTCCT | 57.562 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
658 | 659 | 3.716872 | TCTTTCCCTCATATCCCACTTCC | 59.283 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
659 | 660 | 4.656112 | TCTCTTTCCCTCATATCCCACTTC | 59.344 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
660 | 661 | 4.635473 | TCTCTTTCCCTCATATCCCACTT | 58.365 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
661 | 662 | 4.286813 | TCTCTTTCCCTCATATCCCACT | 57.713 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
662 | 663 | 5.373812 | TTTCTCTTTCCCTCATATCCCAC | 57.626 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
663 | 664 | 5.103940 | CCTTTTCTCTTTCCCTCATATCCCA | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 4.37 |
664 | 665 | 5.380900 | CCTTTTCTCTTTCCCTCATATCCC | 58.619 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
665 | 666 | 5.103898 | ACCCTTTTCTCTTTCCCTCATATCC | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
666 | 667 | 6.007485 | ACCCTTTTCTCTTTCCCTCATATC | 57.993 | 41.667 | 0.00 | 0.00 | 0.00 | 1.63 |
667 | 668 | 6.011628 | TGAACCCTTTTCTCTTTCCCTCATAT | 60.012 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
668 | 669 | 5.312178 | TGAACCCTTTTCTCTTTCCCTCATA | 59.688 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
669 | 670 | 4.106341 | TGAACCCTTTTCTCTTTCCCTCAT | 59.894 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
670 | 671 | 3.461831 | TGAACCCTTTTCTCTTTCCCTCA | 59.538 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
671 | 672 | 4.100279 | TGAACCCTTTTCTCTTTCCCTC | 57.900 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
672 | 673 | 4.667573 | GATGAACCCTTTTCTCTTTCCCT | 58.332 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
673 | 674 | 3.440522 | CGATGAACCCTTTTCTCTTTCCC | 59.559 | 47.826 | 0.00 | 0.00 | 0.00 | 3.97 |
674 | 675 | 4.324267 | TCGATGAACCCTTTTCTCTTTCC | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
675 | 676 | 5.238583 | TCTCGATGAACCCTTTTCTCTTTC | 58.761 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
676 | 677 | 5.228945 | TCTCGATGAACCCTTTTCTCTTT | 57.771 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
677 | 678 | 4.323104 | CCTCTCGATGAACCCTTTTCTCTT | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
678 | 679 | 3.196685 | CCTCTCGATGAACCCTTTTCTCT | 59.803 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
679 | 680 | 3.195825 | TCCTCTCGATGAACCCTTTTCTC | 59.804 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
680 | 681 | 3.173965 | TCCTCTCGATGAACCCTTTTCT | 58.826 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
681 | 682 | 3.526534 | CTCCTCTCGATGAACCCTTTTC | 58.473 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
682 | 683 | 2.237392 | CCTCCTCTCGATGAACCCTTTT | 59.763 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
683 | 684 | 1.834263 | CCTCCTCTCGATGAACCCTTT | 59.166 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
684 | 685 | 1.490574 | CCTCCTCTCGATGAACCCTT | 58.509 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
685 | 686 | 0.397816 | CCCTCCTCTCGATGAACCCT | 60.398 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
686 | 687 | 1.403687 | CCCCTCCTCTCGATGAACCC | 61.404 | 65.000 | 0.00 | 0.00 | 0.00 | 4.11 |
687 | 688 | 2.034048 | GCCCCTCCTCTCGATGAACC | 62.034 | 65.000 | 0.00 | 0.00 | 0.00 | 3.62 |
688 | 689 | 1.443828 | GCCCCTCCTCTCGATGAAC | 59.556 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
689 | 690 | 2.127869 | CGCCCCTCCTCTCGATGAA | 61.128 | 63.158 | 0.00 | 0.00 | 0.00 | 2.57 |
690 | 691 | 2.519541 | CGCCCCTCCTCTCGATGA | 60.520 | 66.667 | 0.00 | 0.00 | 0.00 | 2.92 |
691 | 692 | 2.519541 | TCGCCCCTCCTCTCGATG | 60.520 | 66.667 | 0.00 | 0.00 | 0.00 | 3.84 |
692 | 693 | 2.203422 | CTCGCCCCTCCTCTCGAT | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.59 |
693 | 694 | 3.408099 | CTCTCGCCCCTCCTCTCGA | 62.408 | 68.421 | 0.00 | 0.00 | 0.00 | 4.04 |
694 | 695 | 2.904866 | CTCTCGCCCCTCCTCTCG | 60.905 | 72.222 | 0.00 | 0.00 | 0.00 | 4.04 |
695 | 696 | 2.520741 | CCTCTCGCCCCTCCTCTC | 60.521 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
696 | 697 | 3.024356 | TCCTCTCGCCCCTCCTCT | 61.024 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
697 | 698 | 2.520741 | CTCCTCTCGCCCCTCCTC | 60.521 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
698 | 699 | 4.851214 | GCTCCTCTCGCCCCTCCT | 62.851 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
707 | 708 | 3.726631 | CTCGACGCACGCTCCTCTC | 62.727 | 68.421 | 0.00 | 0.00 | 42.26 | 3.20 |
708 | 709 | 3.805307 | CTCGACGCACGCTCCTCT | 61.805 | 66.667 | 0.00 | 0.00 | 42.26 | 3.69 |
709 | 710 | 4.838486 | CCTCGACGCACGCTCCTC | 62.838 | 72.222 | 0.00 | 0.00 | 42.26 | 3.71 |
723 | 724 | 1.906333 | GGCTCCTCTCGATCCCCTC | 60.906 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
724 | 725 | 1.068943 | TAGGCTCCTCTCGATCCCCT | 61.069 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
725 | 726 | 0.610785 | CTAGGCTCCTCTCGATCCCC | 60.611 | 65.000 | 0.00 | 0.00 | 0.00 | 4.81 |
726 | 727 | 0.610785 | CCTAGGCTCCTCTCGATCCC | 60.611 | 65.000 | 0.00 | 0.00 | 0.00 | 3.85 |
727 | 728 | 0.111639 | ACCTAGGCTCCTCTCGATCC | 59.888 | 60.000 | 9.30 | 0.00 | 0.00 | 3.36 |
728 | 729 | 1.989706 | AACCTAGGCTCCTCTCGATC | 58.010 | 55.000 | 9.30 | 0.00 | 0.00 | 3.69 |
729 | 730 | 2.463047 | AAACCTAGGCTCCTCTCGAT | 57.537 | 50.000 | 9.30 | 0.00 | 0.00 | 3.59 |
730 | 731 | 2.233305 | AAAACCTAGGCTCCTCTCGA | 57.767 | 50.000 | 9.30 | 0.00 | 0.00 | 4.04 |
748 | 749 | 0.824182 | CCCACCCCACGCACTAAAAA | 60.824 | 55.000 | 0.00 | 0.00 | 0.00 | 1.94 |
749 | 750 | 1.228306 | CCCACCCCACGCACTAAAA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 1.52 |
750 | 751 | 2.148052 | TCCCACCCCACGCACTAAA | 61.148 | 57.895 | 0.00 | 0.00 | 0.00 | 1.85 |
751 | 752 | 2.527123 | TCCCACCCCACGCACTAA | 60.527 | 61.111 | 0.00 | 0.00 | 0.00 | 2.24 |
752 | 753 | 3.315949 | GTCCCACCCCACGCACTA | 61.316 | 66.667 | 0.00 | 0.00 | 0.00 | 2.74 |
754 | 755 | 4.572571 | TTGTCCCACCCCACGCAC | 62.573 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
755 | 756 | 2.856039 | TTTTTGTCCCACCCCACGCA | 62.856 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 |
756 | 757 | 1.468506 | ATTTTTGTCCCACCCCACGC | 61.469 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
757 | 758 | 1.912417 | TATTTTTGTCCCACCCCACG | 58.088 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
758 | 759 | 2.300723 | GGTTATTTTTGTCCCACCCCAC | 59.699 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
759 | 760 | 2.090719 | TGGTTATTTTTGTCCCACCCCA | 60.091 | 45.455 | 0.00 | 0.00 | 0.00 | 4.96 |
760 | 761 | 2.565391 | CTGGTTATTTTTGTCCCACCCC | 59.435 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
761 | 762 | 2.028476 | GCTGGTTATTTTTGTCCCACCC | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
762 | 763 | 2.352323 | CGCTGGTTATTTTTGTCCCACC | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
763 | 764 | 2.554893 | TCGCTGGTTATTTTTGTCCCAC | 59.445 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
764 | 765 | 2.865079 | TCGCTGGTTATTTTTGTCCCA | 58.135 | 42.857 | 0.00 | 0.00 | 0.00 | 4.37 |
765 | 766 | 3.926821 | TTCGCTGGTTATTTTTGTCCC | 57.073 | 42.857 | 0.00 | 0.00 | 0.00 | 4.46 |
786 | 787 | 3.581265 | TGGTACTTCTTCCGGGTTTTT | 57.419 | 42.857 | 0.00 | 0.00 | 0.00 | 1.94 |
787 | 788 | 3.801307 | ATGGTACTTCTTCCGGGTTTT | 57.199 | 42.857 | 0.00 | 0.00 | 0.00 | 2.43 |
788 | 789 | 4.098894 | TCTATGGTACTTCTTCCGGGTTT | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
789 | 790 | 3.716431 | TCTATGGTACTTCTTCCGGGTT | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 4.11 |
790 | 791 | 3.393426 | TCTATGGTACTTCTTCCGGGT | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 5.28 |
791 | 792 | 3.705072 | ACTTCTATGGTACTTCTTCCGGG | 59.295 | 47.826 | 0.00 | 0.00 | 0.00 | 5.73 |
792 | 793 | 5.221204 | GGTACTTCTATGGTACTTCTTCCGG | 60.221 | 48.000 | 0.00 | 0.00 | 39.36 | 5.14 |
793 | 794 | 5.359009 | TGGTACTTCTATGGTACTTCTTCCG | 59.641 | 44.000 | 0.00 | 0.00 | 39.36 | 4.30 |
794 | 795 | 6.786967 | TGGTACTTCTATGGTACTTCTTCC | 57.213 | 41.667 | 0.00 | 0.00 | 39.36 | 3.46 |
795 | 796 | 9.498176 | TTTTTGGTACTTCTATGGTACTTCTTC | 57.502 | 33.333 | 0.00 | 0.00 | 39.36 | 2.87 |
818 | 819 | 1.530655 | CACCTCACCCGGCCTTTTT | 60.531 | 57.895 | 0.00 | 0.00 | 0.00 | 1.94 |
819 | 820 | 2.115266 | CACCTCACCCGGCCTTTT | 59.885 | 61.111 | 0.00 | 0.00 | 0.00 | 2.27 |
820 | 821 | 3.966543 | CCACCTCACCCGGCCTTT | 61.967 | 66.667 | 0.00 | 0.00 | 0.00 | 3.11 |
826 | 827 | 2.386064 | TTTTCGTCCCACCTCACCCG | 62.386 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
827 | 828 | 0.037734 | ATTTTCGTCCCACCTCACCC | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
828 | 829 | 2.773993 | TATTTTCGTCCCACCTCACC | 57.226 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
829 | 830 | 4.320714 | GGTTTTATTTTCGTCCCACCTCAC | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
830 | 831 | 3.822167 | GGTTTTATTTTCGTCCCACCTCA | 59.178 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
831 | 832 | 3.192001 | GGGTTTTATTTTCGTCCCACCTC | 59.808 | 47.826 | 0.00 | 0.00 | 35.43 | 3.85 |
832 | 833 | 3.159472 | GGGTTTTATTTTCGTCCCACCT | 58.841 | 45.455 | 0.00 | 0.00 | 35.43 | 4.00 |
833 | 834 | 2.095110 | CGGGTTTTATTTTCGTCCCACC | 60.095 | 50.000 | 0.00 | 0.00 | 35.08 | 4.61 |
834 | 835 | 2.095110 | CCGGGTTTTATTTTCGTCCCAC | 60.095 | 50.000 | 0.00 | 0.00 | 35.08 | 4.61 |
835 | 836 | 2.161030 | CCGGGTTTTATTTTCGTCCCA | 58.839 | 47.619 | 0.00 | 0.00 | 35.08 | 4.37 |
836 | 837 | 2.435422 | TCCGGGTTTTATTTTCGTCCC | 58.565 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
837 | 838 | 3.242511 | CGATCCGGGTTTTATTTTCGTCC | 60.243 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
838 | 839 | 3.786489 | GCGATCCGGGTTTTATTTTCGTC | 60.786 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
839 | 840 | 2.096335 | GCGATCCGGGTTTTATTTTCGT | 59.904 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
840 | 841 | 2.711885 | GCGATCCGGGTTTTATTTTCG | 58.288 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
841 | 842 | 2.352342 | TCGCGATCCGGGTTTTATTTTC | 59.648 | 45.455 | 3.71 | 0.00 | 40.60 | 2.29 |
842 | 843 | 2.096335 | GTCGCGATCCGGGTTTTATTTT | 59.904 | 45.455 | 14.06 | 0.00 | 40.60 | 1.82 |
843 | 844 | 1.667212 | GTCGCGATCCGGGTTTTATTT | 59.333 | 47.619 | 14.06 | 0.00 | 40.60 | 1.40 |
844 | 845 | 1.292992 | GTCGCGATCCGGGTTTTATT | 58.707 | 50.000 | 14.06 | 0.00 | 40.60 | 1.40 |
845 | 846 | 0.531311 | GGTCGCGATCCGGGTTTTAT | 60.531 | 55.000 | 14.06 | 0.00 | 40.60 | 1.40 |
846 | 847 | 1.153588 | GGTCGCGATCCGGGTTTTA | 60.154 | 57.895 | 14.06 | 0.00 | 40.60 | 1.52 |
847 | 848 | 1.606885 | TAGGTCGCGATCCGGGTTTT | 61.607 | 55.000 | 17.38 | 0.00 | 40.60 | 2.43 |
848 | 849 | 2.053865 | TAGGTCGCGATCCGGGTTT | 61.054 | 57.895 | 17.38 | 0.00 | 40.60 | 3.27 |
849 | 850 | 2.440796 | TAGGTCGCGATCCGGGTT | 60.441 | 61.111 | 17.38 | 0.00 | 40.60 | 4.11 |
850 | 851 | 3.214845 | GTAGGTCGCGATCCGGGT | 61.215 | 66.667 | 17.38 | 0.00 | 40.60 | 5.28 |
851 | 852 | 3.974757 | GGTAGGTCGCGATCCGGG | 61.975 | 72.222 | 17.38 | 0.00 | 41.10 | 5.73 |
852 | 853 | 3.214123 | TGGTAGGTCGCGATCCGG | 61.214 | 66.667 | 17.38 | 0.00 | 37.59 | 5.14 |
853 | 854 | 2.025727 | GTGGTAGGTCGCGATCCG | 59.974 | 66.667 | 17.38 | 0.00 | 38.61 | 4.18 |
854 | 855 | 2.125961 | AGGTGGTAGGTCGCGATCC | 61.126 | 63.158 | 17.38 | 17.03 | 0.00 | 3.36 |
855 | 856 | 1.065928 | CAGGTGGTAGGTCGCGATC | 59.934 | 63.158 | 14.06 | 13.27 | 0.00 | 3.69 |
856 | 857 | 1.379443 | TCAGGTGGTAGGTCGCGAT | 60.379 | 57.895 | 14.06 | 0.00 | 0.00 | 4.58 |
857 | 858 | 2.034532 | TCAGGTGGTAGGTCGCGA | 59.965 | 61.111 | 3.71 | 3.71 | 0.00 | 5.87 |
858 | 859 | 2.044555 | TCTCAGGTGGTAGGTCGCG | 61.045 | 63.158 | 0.00 | 0.00 | 0.00 | 5.87 |
859 | 860 | 1.248785 | TGTCTCAGGTGGTAGGTCGC | 61.249 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
860 | 861 | 1.475403 | ATGTCTCAGGTGGTAGGTCG | 58.525 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
861 | 862 | 2.832129 | TCAATGTCTCAGGTGGTAGGTC | 59.168 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
862 | 863 | 2.834549 | CTCAATGTCTCAGGTGGTAGGT | 59.165 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
863 | 864 | 3.099905 | TCTCAATGTCTCAGGTGGTAGG | 58.900 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
864 | 865 | 3.766591 | ACTCTCAATGTCTCAGGTGGTAG | 59.233 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
865 | 866 | 3.779444 | ACTCTCAATGTCTCAGGTGGTA | 58.221 | 45.455 | 0.00 | 0.00 | 0.00 | 3.25 |
866 | 867 | 2.614259 | ACTCTCAATGTCTCAGGTGGT | 58.386 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
867 | 868 | 4.019858 | TCTACTCTCAATGTCTCAGGTGG | 58.980 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
868 | 869 | 4.946772 | TCTCTACTCTCAATGTCTCAGGTG | 59.053 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
869 | 870 | 5.186256 | TCTCTACTCTCAATGTCTCAGGT | 57.814 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
870 | 871 | 5.507817 | GCATCTCTACTCTCAATGTCTCAGG | 60.508 | 48.000 | 0.00 | 0.00 | 0.00 | 3.86 |
871 | 872 | 5.507817 | GGCATCTCTACTCTCAATGTCTCAG | 60.508 | 48.000 | 0.00 | 0.00 | 0.00 | 3.35 |
872 | 873 | 4.340666 | GGCATCTCTACTCTCAATGTCTCA | 59.659 | 45.833 | 0.00 | 0.00 | 0.00 | 3.27 |
873 | 874 | 4.556501 | CGGCATCTCTACTCTCAATGTCTC | 60.557 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
874 | 875 | 3.317711 | CGGCATCTCTACTCTCAATGTCT | 59.682 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
875 | 876 | 3.316588 | TCGGCATCTCTACTCTCAATGTC | 59.683 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
876 | 877 | 3.067461 | GTCGGCATCTCTACTCTCAATGT | 59.933 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
877 | 878 | 3.067320 | TGTCGGCATCTCTACTCTCAATG | 59.933 | 47.826 | 0.00 | 0.00 | 0.00 | 2.82 |
878 | 879 | 3.067461 | GTGTCGGCATCTCTACTCTCAAT | 59.933 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
879 | 880 | 2.423892 | GTGTCGGCATCTCTACTCTCAA | 59.576 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
880 | 881 | 2.017782 | GTGTCGGCATCTCTACTCTCA | 58.982 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
881 | 882 | 1.003331 | CGTGTCGGCATCTCTACTCTC | 60.003 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
882 | 883 | 1.018148 | CGTGTCGGCATCTCTACTCT | 58.982 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
883 | 884 | 0.592754 | GCGTGTCGGCATCTCTACTC | 60.593 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
884 | 885 | 1.032657 | AGCGTGTCGGCATCTCTACT | 61.033 | 55.000 | 0.00 | 0.00 | 34.64 | 2.57 |
885 | 886 | 0.661552 | TAGCGTGTCGGCATCTCTAC | 59.338 | 55.000 | 0.00 | 0.00 | 34.64 | 2.59 |
886 | 887 | 0.661552 | GTAGCGTGTCGGCATCTCTA | 59.338 | 55.000 | 0.00 | 0.00 | 34.64 | 2.43 |
887 | 888 | 1.032657 | AGTAGCGTGTCGGCATCTCT | 61.033 | 55.000 | 0.00 | 0.00 | 34.64 | 3.10 |
888 | 889 | 0.179134 | AAGTAGCGTGTCGGCATCTC | 60.179 | 55.000 | 0.00 | 0.00 | 34.64 | 2.75 |
889 | 890 | 0.179134 | GAAGTAGCGTGTCGGCATCT | 60.179 | 55.000 | 0.00 | 0.00 | 34.64 | 2.90 |
890 | 891 | 1.472276 | CGAAGTAGCGTGTCGGCATC | 61.472 | 60.000 | 0.00 | 0.00 | 34.64 | 3.91 |
891 | 892 | 1.516386 | CGAAGTAGCGTGTCGGCAT | 60.516 | 57.895 | 0.00 | 0.00 | 34.64 | 4.40 |
892 | 893 | 2.126618 | CGAAGTAGCGTGTCGGCA | 60.127 | 61.111 | 0.00 | 0.00 | 34.64 | 5.69 |
893 | 894 | 2.879462 | CCGAAGTAGCGTGTCGGC | 60.879 | 66.667 | 7.96 | 0.00 | 46.91 | 5.54 |
895 | 896 | 2.152699 | CAGCCGAAGTAGCGTGTCG | 61.153 | 63.158 | 0.00 | 0.00 | 34.64 | 4.35 |
896 | 897 | 0.798771 | CTCAGCCGAAGTAGCGTGTC | 60.799 | 60.000 | 0.00 | 0.00 | 34.64 | 3.67 |
897 | 898 | 1.213013 | CTCAGCCGAAGTAGCGTGT | 59.787 | 57.895 | 0.00 | 0.00 | 34.64 | 4.49 |
898 | 899 | 0.388649 | AACTCAGCCGAAGTAGCGTG | 60.389 | 55.000 | 0.00 | 0.00 | 34.64 | 5.34 |
899 | 900 | 1.132643 | CTAACTCAGCCGAAGTAGCGT | 59.867 | 52.381 | 0.00 | 0.00 | 34.64 | 5.07 |
900 | 901 | 1.400846 | TCTAACTCAGCCGAAGTAGCG | 59.599 | 52.381 | 0.00 | 0.00 | 34.64 | 4.26 |
901 | 902 | 3.719173 | ATCTAACTCAGCCGAAGTAGC | 57.281 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
902 | 903 | 9.400638 | CTTTTATATCTAACTCAGCCGAAGTAG | 57.599 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
903 | 904 | 7.866393 | GCTTTTATATCTAACTCAGCCGAAGTA | 59.134 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
904 | 905 | 6.702282 | GCTTTTATATCTAACTCAGCCGAAGT | 59.298 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
905 | 906 | 6.146347 | GGCTTTTATATCTAACTCAGCCGAAG | 59.854 | 42.308 | 0.00 | 0.00 | 0.00 | 3.79 |
906 | 907 | 5.989777 | GGCTTTTATATCTAACTCAGCCGAA | 59.010 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
907 | 908 | 5.510861 | GGGCTTTTATATCTAACTCAGCCGA | 60.511 | 44.000 | 0.00 | 0.00 | 39.38 | 5.54 |
908 | 909 | 4.691216 | GGGCTTTTATATCTAACTCAGCCG | 59.309 | 45.833 | 0.00 | 0.00 | 39.38 | 5.52 |
909 | 910 | 5.621193 | TGGGCTTTTATATCTAACTCAGCC | 58.379 | 41.667 | 0.00 | 0.00 | 37.93 | 4.85 |
910 | 911 | 6.292150 | ACTGGGCTTTTATATCTAACTCAGC | 58.708 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
911 | 912 | 6.642950 | CGACTGGGCTTTTATATCTAACTCAG | 59.357 | 42.308 | 0.00 | 0.00 | 0.00 | 3.35 |
912 | 913 | 6.097839 | ACGACTGGGCTTTTATATCTAACTCA | 59.902 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
913 | 914 | 6.514063 | ACGACTGGGCTTTTATATCTAACTC | 58.486 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
914 | 915 | 6.481434 | ACGACTGGGCTTTTATATCTAACT | 57.519 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
915 | 916 | 5.401674 | CGACGACTGGGCTTTTATATCTAAC | 59.598 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
916 | 917 | 5.068198 | ACGACGACTGGGCTTTTATATCTAA | 59.932 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
917 | 918 | 4.581824 | ACGACGACTGGGCTTTTATATCTA | 59.418 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
918 | 919 | 3.383825 | ACGACGACTGGGCTTTTATATCT | 59.616 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
919 | 920 | 3.714391 | ACGACGACTGGGCTTTTATATC | 58.286 | 45.455 | 0.00 | 0.00 | 0.00 | 1.63 |
920 | 921 | 3.492137 | GGACGACGACTGGGCTTTTATAT | 60.492 | 47.826 | 0.00 | 0.00 | 0.00 | 0.86 |
921 | 922 | 2.159198 | GGACGACGACTGGGCTTTTATA | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
946 | 947 | 7.921786 | ATTTCTTGTTCGATTGACTGGATTA | 57.078 | 32.000 | 0.00 | 0.00 | 0.00 | 1.75 |
947 | 948 | 6.824305 | ATTTCTTGTTCGATTGACTGGATT | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
948 | 949 | 6.824305 | AATTTCTTGTTCGATTGACTGGAT | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
949 | 950 | 6.633500 | AAATTTCTTGTTCGATTGACTGGA | 57.367 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
950 | 951 | 7.141363 | AGAAAATTTCTTGTTCGATTGACTGG | 58.859 | 34.615 | 1.80 | 0.00 | 36.36 | 4.00 |
1116 | 1148 | 4.479993 | CCTCCTCCTTGCGCCTGG | 62.480 | 72.222 | 4.18 | 7.26 | 0.00 | 4.45 |
1362 | 1394 | 2.679355 | TTGTGATTGCCGAGTTTTCG | 57.321 | 45.000 | 0.00 | 0.00 | 46.29 | 3.46 |
1365 | 1397 | 2.293399 | GTCCTTTGTGATTGCCGAGTTT | 59.707 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
1404 | 1436 | 2.430248 | TGACGTATAGCACTCCTCCA | 57.570 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1460 | 1536 | 9.582431 | TTCAATTTGAGAAACCGATACTACTAG | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1523 | 1639 | 1.220749 | GTACGAGGCCATGCAAGGA | 59.779 | 57.895 | 13.26 | 0.00 | 0.00 | 3.36 |
1526 | 1642 | 2.125310 | CCGTACGAGGCCATGCAA | 60.125 | 61.111 | 18.76 | 0.00 | 0.00 | 4.08 |
1611 | 1727 | 2.670509 | CGAAGGTCTTGTCGAGGGTAAC | 60.671 | 54.545 | 0.00 | 0.00 | 39.64 | 2.50 |
1723 | 1852 | 1.949525 | GCCCCATGTGTATGCACTAAG | 59.050 | 52.381 | 15.25 | 4.91 | 45.44 | 2.18 |
1735 | 1864 | 3.336568 | AGCAGAGCAGCCCCATGT | 61.337 | 61.111 | 0.00 | 0.00 | 34.23 | 3.21 |
1821 | 2128 | 5.051708 | GGAAACAAAGAAAACGTGAAGCATC | 60.052 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1873 | 2181 | 2.507407 | TCAAACCCCAAGTATCTGCC | 57.493 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1879 | 2187 | 4.457466 | GAAGACACTTCAAACCCCAAGTA | 58.543 | 43.478 | 6.63 | 0.00 | 31.41 | 2.24 |
2050 | 2375 | 0.622665 | CCATGGCCTTCTTGACTCCT | 59.377 | 55.000 | 3.32 | 0.00 | 0.00 | 3.69 |
2231 | 2619 | 4.733815 | GCATCAGTCAGGAAGCATGATTTG | 60.734 | 45.833 | 0.00 | 0.00 | 32.11 | 2.32 |
2237 | 2625 | 2.017623 | GCAGCATCAGTCAGGAAGCAT | 61.018 | 52.381 | 0.00 | 0.00 | 34.13 | 3.79 |
2265 | 2657 | 8.208718 | TGCCATACAATGAAATCTAACACTAC | 57.791 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
2282 | 2674 | 3.076621 | CTGAAGAGCAGTTTGCCATACA | 58.923 | 45.455 | 0.00 | 0.00 | 46.52 | 2.29 |
2316 | 2708 | 7.768120 | AGGATTCACTGTGCAATTTAAAAACAA | 59.232 | 29.630 | 2.12 | 0.00 | 0.00 | 2.83 |
2325 | 2717 | 2.522185 | AGCAGGATTCACTGTGCAATT | 58.478 | 42.857 | 2.12 | 0.00 | 40.59 | 2.32 |
2326 | 2718 | 2.211250 | AGCAGGATTCACTGTGCAAT | 57.789 | 45.000 | 2.12 | 4.24 | 40.59 | 3.56 |
2334 | 2735 | 2.409948 | AGGTAGCAAGCAGGATTCAC | 57.590 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2385 | 2828 | 7.378181 | ACCAGGATTTATTAGTTTGCAACTTG | 58.622 | 34.615 | 0.00 | 0.00 | 42.81 | 3.16 |
2448 | 2894 | 2.843730 | TGGCAACATCAGTATGGTAGGT | 59.156 | 45.455 | 0.00 | 0.00 | 46.17 | 3.08 |
2449 | 2895 | 3.558931 | TGGCAACATCAGTATGGTAGG | 57.441 | 47.619 | 0.00 | 0.00 | 46.17 | 3.18 |
2492 | 2938 | 4.846779 | TGCCATACAAGTTTTTGGTCTC | 57.153 | 40.909 | 0.00 | 0.00 | 38.66 | 3.36 |
2498 | 2944 | 5.022282 | AGCAGTTTGCCATACAAGTTTTT | 57.978 | 34.783 | 0.00 | 0.00 | 46.52 | 1.94 |
2499 | 2945 | 4.342092 | AGAGCAGTTTGCCATACAAGTTTT | 59.658 | 37.500 | 0.00 | 0.00 | 46.52 | 2.43 |
2568 | 3015 | 2.029838 | AAGGTAGCAAGCAGGATTCG | 57.970 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2596 | 3043 | 0.038166 | TGGGATGAACAAGGGCACTC | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2602 | 3049 | 1.843368 | AGCACATGGGATGAACAAGG | 58.157 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2611 | 3058 | 6.747414 | ACAACTTATATCTAGCACATGGGA | 57.253 | 37.500 | 0.00 | 0.00 | 0.00 | 4.37 |
2737 | 3219 | 7.506328 | ACAAAACCTGGAGTTAAATCTGTAC | 57.494 | 36.000 | 0.00 | 0.00 | 37.88 | 2.90 |
2886 | 3407 | 6.040166 | AGGATTTCCTCAAATCATGCATGTAC | 59.960 | 38.462 | 25.43 | 3.19 | 46.94 | 2.90 |
2916 | 3546 | 3.703001 | TGCTTCTGGAAACTAAGAGGG | 57.297 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
3001 | 3632 | 3.482156 | ACGGGATCTCCTCAAATGATG | 57.518 | 47.619 | 0.00 | 0.00 | 35.95 | 3.07 |
3004 | 3635 | 2.171448 | AGGAACGGGATCTCCTCAAATG | 59.829 | 50.000 | 0.00 | 0.00 | 37.53 | 2.32 |
3014 | 3645 | 0.179070 | GAAGGCAGAGGAACGGGATC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3019 | 3650 | 3.882025 | GCAGAAGGCAGAGGAACG | 58.118 | 61.111 | 0.00 | 0.00 | 43.97 | 3.95 |
3276 | 3919 | 7.703621 | CCAAGTAATGAGGAAAAATACATGCAG | 59.296 | 37.037 | 0.00 | 0.00 | 0.00 | 4.41 |
3695 | 4758 | 4.488126 | AACACACATGCATCAGTACAAC | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
3963 | 7116 | 5.656549 | TTCCTCCCTAACAGAAAAGGAAA | 57.343 | 39.130 | 0.00 | 0.00 | 39.34 | 3.13 |
3964 | 7117 | 5.312178 | TCATTCCTCCCTAACAGAAAAGGAA | 59.688 | 40.000 | 4.29 | 4.29 | 44.53 | 3.36 |
4103 | 9171 | 5.552870 | ACACCCATTCATATAGACAGACC | 57.447 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
4198 | 9269 | 6.557110 | ACTGTACAGTTTACGCAACAAAAAT | 58.443 | 32.000 | 22.95 | 0.00 | 38.83 | 1.82 |
4240 | 9312 | 6.954944 | TCACCTTCTTTTGTAAAATCTGACG | 58.045 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4242 | 9314 | 9.965824 | GATTTCACCTTCTTTTGTAAAATCTGA | 57.034 | 29.630 | 0.00 | 0.00 | 32.07 | 3.27 |
4289 | 9361 | 0.598065 | ATGGGCTCAAAGCAACGAAC | 59.402 | 50.000 | 0.00 | 0.00 | 44.75 | 3.95 |
4291 | 9363 | 1.243342 | CCATGGGCTCAAAGCAACGA | 61.243 | 55.000 | 2.85 | 0.00 | 44.75 | 3.85 |
4292 | 9364 | 1.213537 | CCATGGGCTCAAAGCAACG | 59.786 | 57.895 | 2.85 | 0.00 | 44.75 | 4.10 |
4293 | 9365 | 0.037975 | CACCATGGGCTCAAAGCAAC | 60.038 | 55.000 | 18.09 | 0.00 | 44.75 | 4.17 |
4297 | 9369 | 0.890683 | GGAACACCATGGGCTCAAAG | 59.109 | 55.000 | 18.09 | 0.00 | 0.00 | 2.77 |
4343 | 9422 | 2.864968 | CCGAGCGCAGTATAGGATAAC | 58.135 | 52.381 | 11.47 | 0.00 | 0.00 | 1.89 |
4367 | 9446 | 1.654954 | CTGCATGTTCTCCCAGCAGC | 61.655 | 60.000 | 0.00 | 0.00 | 44.98 | 5.25 |
4368 | 9447 | 2.478989 | CTGCATGTTCTCCCAGCAG | 58.521 | 57.895 | 0.00 | 0.00 | 45.44 | 4.24 |
4369 | 9448 | 4.728409 | CTGCATGTTCTCCCAGCA | 57.272 | 55.556 | 0.00 | 0.00 | 0.00 | 4.41 |
4414 | 9493 | 2.465860 | ATTTTTAAAACAGGCCGCCC | 57.534 | 45.000 | 5.55 | 0.00 | 0.00 | 6.13 |
4415 | 9494 | 2.410392 | CGAATTTTTAAAACAGGCCGCC | 59.590 | 45.455 | 0.00 | 0.00 | 0.00 | 6.13 |
4416 | 9495 | 3.054166 | ACGAATTTTTAAAACAGGCCGC | 58.946 | 40.909 | 0.00 | 0.00 | 0.00 | 6.53 |
4417 | 9496 | 5.644902 | AAACGAATTTTTAAAACAGGCCG | 57.355 | 34.783 | 0.00 | 3.50 | 0.00 | 6.13 |
4547 | 9626 | 9.766277 | GTGAGAAAACAATTTTTATTGCAAACA | 57.234 | 25.926 | 1.71 | 0.00 | 34.94 | 2.83 |
4548 | 9627 | 9.986833 | AGTGAGAAAACAATTTTTATTGCAAAC | 57.013 | 25.926 | 1.71 | 0.00 | 34.94 | 2.93 |
4550 | 9629 | 9.376075 | TGAGTGAGAAAACAATTTTTATTGCAA | 57.624 | 25.926 | 0.00 | 0.00 | 34.94 | 4.08 |
4551 | 9630 | 8.939201 | TGAGTGAGAAAACAATTTTTATTGCA | 57.061 | 26.923 | 0.00 | 0.00 | 34.94 | 4.08 |
4564 | 9643 | 6.255215 | TCGAACATGTTTTGAGTGAGAAAAC | 58.745 | 36.000 | 13.36 | 0.00 | 41.63 | 2.43 |
4565 | 9644 | 6.429791 | TCGAACATGTTTTGAGTGAGAAAA | 57.570 | 33.333 | 13.36 | 0.00 | 0.00 | 2.29 |
4566 | 9645 | 6.429791 | TTCGAACATGTTTTGAGTGAGAAA | 57.570 | 33.333 | 13.36 | 0.00 | 0.00 | 2.52 |
4567 | 9646 | 6.429791 | TTTCGAACATGTTTTGAGTGAGAA | 57.570 | 33.333 | 13.36 | 6.17 | 0.00 | 2.87 |
4568 | 9647 | 6.618287 | ATTTCGAACATGTTTTGAGTGAGA | 57.382 | 33.333 | 13.36 | 0.93 | 0.00 | 3.27 |
4569 | 9648 | 7.684062 | AAATTTCGAACATGTTTTGAGTGAG | 57.316 | 32.000 | 13.36 | 0.00 | 0.00 | 3.51 |
4570 | 9649 | 7.757173 | TGAAAATTTCGAACATGTTTTGAGTGA | 59.243 | 29.630 | 13.36 | 5.13 | 0.00 | 3.41 |
4571 | 9650 | 7.893824 | TGAAAATTTCGAACATGTTTTGAGTG | 58.106 | 30.769 | 13.36 | 0.00 | 0.00 | 3.51 |
4572 | 9651 | 8.472683 | TTGAAAATTTCGAACATGTTTTGAGT | 57.527 | 26.923 | 13.36 | 4.61 | 0.00 | 3.41 |
4573 | 9652 | 9.752274 | TTTTGAAAATTTCGAACATGTTTTGAG | 57.248 | 25.926 | 13.36 | 5.36 | 32.91 | 3.02 |
4574 | 9653 | 9.535270 | GTTTTGAAAATTTCGAACATGTTTTGA | 57.465 | 25.926 | 13.36 | 11.16 | 32.91 | 2.69 |
4575 | 9654 | 9.322776 | TGTTTTGAAAATTTCGAACATGTTTTG | 57.677 | 25.926 | 13.36 | 8.89 | 35.10 | 2.44 |
4576 | 9655 | 9.884465 | TTGTTTTGAAAATTTCGAACATGTTTT | 57.116 | 22.222 | 20.25 | 0.43 | 37.80 | 2.43 |
4577 | 9656 | 9.884465 | TTTGTTTTGAAAATTTCGAACATGTTT | 57.116 | 22.222 | 20.25 | 0.00 | 37.80 | 2.83 |
4578 | 9657 | 9.884465 | TTTTGTTTTGAAAATTTCGAACATGTT | 57.116 | 22.222 | 20.25 | 11.78 | 37.80 | 2.71 |
4582 | 9661 | 9.334693 | CCAATTTTGTTTTGAAAATTTCGAACA | 57.665 | 25.926 | 17.53 | 17.53 | 41.47 | 3.18 |
4583 | 9662 | 8.793472 | CCCAATTTTGTTTTGAAAATTTCGAAC | 58.207 | 29.630 | 7.84 | 11.50 | 41.47 | 3.95 |
4584 | 9663 | 7.486232 | GCCCAATTTTGTTTTGAAAATTTCGAA | 59.514 | 29.630 | 4.37 | 4.37 | 41.47 | 3.71 |
4585 | 9664 | 6.969473 | GCCCAATTTTGTTTTGAAAATTTCGA | 59.031 | 30.769 | 0.97 | 0.00 | 41.47 | 3.71 |
4586 | 9665 | 6.749118 | TGCCCAATTTTGTTTTGAAAATTTCG | 59.251 | 30.769 | 0.97 | 0.00 | 41.47 | 3.46 |
4587 | 9666 | 8.379161 | GTTGCCCAATTTTGTTTTGAAAATTTC | 58.621 | 29.630 | 0.00 | 0.00 | 41.47 | 2.17 |
4588 | 9667 | 7.874528 | TGTTGCCCAATTTTGTTTTGAAAATTT | 59.125 | 25.926 | 0.00 | 0.00 | 41.47 | 1.82 |
4589 | 9668 | 7.381323 | TGTTGCCCAATTTTGTTTTGAAAATT | 58.619 | 26.923 | 0.00 | 0.00 | 43.26 | 1.82 |
4590 | 9669 | 6.928520 | TGTTGCCCAATTTTGTTTTGAAAAT | 58.071 | 28.000 | 0.00 | 0.00 | 37.16 | 1.82 |
4591 | 9670 | 6.331369 | TGTTGCCCAATTTTGTTTTGAAAA | 57.669 | 29.167 | 0.00 | 0.00 | 0.00 | 2.29 |
4592 | 9671 | 5.964958 | TGTTGCCCAATTTTGTTTTGAAA | 57.035 | 30.435 | 0.00 | 0.00 | 0.00 | 2.69 |
4593 | 9672 | 5.964958 | TTGTTGCCCAATTTTGTTTTGAA | 57.035 | 30.435 | 0.00 | 0.00 | 0.00 | 2.69 |
4594 | 9673 | 5.964958 | TTTGTTGCCCAATTTTGTTTTGA | 57.035 | 30.435 | 0.00 | 0.00 | 31.81 | 2.69 |
4619 | 9698 | 8.508875 | GCATGAACTTTTTGGAAAATCATGAAT | 58.491 | 29.630 | 21.84 | 0.00 | 43.41 | 2.57 |
4620 | 9699 | 7.498239 | TGCATGAACTTTTTGGAAAATCATGAA | 59.502 | 29.630 | 21.84 | 14.73 | 43.41 | 2.57 |
4621 | 9700 | 6.990939 | TGCATGAACTTTTTGGAAAATCATGA | 59.009 | 30.769 | 21.84 | 0.00 | 43.41 | 3.07 |
4622 | 9701 | 7.041644 | AGTGCATGAACTTTTTGGAAAATCATG | 60.042 | 33.333 | 17.27 | 17.27 | 43.48 | 3.07 |
4623 | 9702 | 6.993902 | AGTGCATGAACTTTTTGGAAAATCAT | 59.006 | 30.769 | 0.00 | 0.00 | 34.36 | 2.45 |
4624 | 9703 | 6.347696 | AGTGCATGAACTTTTTGGAAAATCA | 58.652 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4625 | 9704 | 6.849588 | AGTGCATGAACTTTTTGGAAAATC | 57.150 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
4626 | 9705 | 8.729805 | TTTAGTGCATGAACTTTTTGGAAAAT | 57.270 | 26.923 | 12.78 | 0.00 | 0.00 | 1.82 |
4627 | 9706 | 8.553459 | TTTTAGTGCATGAACTTTTTGGAAAA | 57.447 | 26.923 | 12.78 | 8.63 | 0.00 | 2.29 |
4628 | 9707 | 8.553459 | TTTTTAGTGCATGAACTTTTTGGAAA | 57.447 | 26.923 | 12.78 | 2.22 | 0.00 | 3.13 |
4743 | 9822 | 9.184062 | GCAGCGAATATTTGATGAATGAATAAA | 57.816 | 29.630 | 22.36 | 0.00 | 29.52 | 1.40 |
4744 | 9823 | 8.570488 | AGCAGCGAATATTTGATGAATGAATAA | 58.430 | 29.630 | 22.36 | 0.00 | 29.52 | 1.40 |
4745 | 9824 | 8.102800 | AGCAGCGAATATTTGATGAATGAATA | 57.897 | 30.769 | 22.36 | 0.00 | 29.52 | 1.75 |
4746 | 9825 | 6.978338 | AGCAGCGAATATTTGATGAATGAAT | 58.022 | 32.000 | 22.36 | 0.63 | 29.52 | 2.57 |
4747 | 9826 | 6.381481 | AGCAGCGAATATTTGATGAATGAA | 57.619 | 33.333 | 22.36 | 0.00 | 29.52 | 2.57 |
4748 | 9827 | 6.261603 | AGAAGCAGCGAATATTTGATGAATGA | 59.738 | 34.615 | 22.36 | 0.00 | 29.52 | 2.57 |
4749 | 9828 | 6.436261 | AGAAGCAGCGAATATTTGATGAATG | 58.564 | 36.000 | 22.36 | 6.54 | 29.52 | 2.67 |
4750 | 9829 | 6.630444 | AGAAGCAGCGAATATTTGATGAAT | 57.370 | 33.333 | 22.36 | 10.96 | 29.52 | 2.57 |
4751 | 9830 | 7.552458 | TTAGAAGCAGCGAATATTTGATGAA | 57.448 | 32.000 | 22.36 | 6.54 | 29.52 | 2.57 |
4752 | 9831 | 7.552458 | TTTAGAAGCAGCGAATATTTGATGA | 57.448 | 32.000 | 22.36 | 0.68 | 29.52 | 2.92 |
4753 | 9832 | 8.619146 | TTTTTAGAAGCAGCGAATATTTGATG | 57.381 | 30.769 | 15.34 | 15.34 | 0.00 | 3.07 |
4754 | 9833 | 9.241317 | CATTTTTAGAAGCAGCGAATATTTGAT | 57.759 | 29.630 | 6.89 | 0.00 | 0.00 | 2.57 |
4755 | 9834 | 8.458052 | TCATTTTTAGAAGCAGCGAATATTTGA | 58.542 | 29.630 | 6.89 | 0.00 | 0.00 | 2.69 |
4756 | 9835 | 8.619146 | TCATTTTTAGAAGCAGCGAATATTTG | 57.381 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
4757 | 9836 | 9.076596 | GTTCATTTTTAGAAGCAGCGAATATTT | 57.923 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4758 | 9837 | 8.243426 | TGTTCATTTTTAGAAGCAGCGAATATT | 58.757 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
4759 | 9838 | 7.761409 | TGTTCATTTTTAGAAGCAGCGAATAT | 58.239 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
4760 | 9839 | 7.139896 | TGTTCATTTTTAGAAGCAGCGAATA | 57.860 | 32.000 | 0.00 | 0.00 | 0.00 | 1.75 |
4761 | 9840 | 6.012658 | TGTTCATTTTTAGAAGCAGCGAAT | 57.987 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
4762 | 9841 | 5.431420 | TGTTCATTTTTAGAAGCAGCGAA | 57.569 | 34.783 | 0.00 | 0.00 | 0.00 | 4.70 |
4763 | 9842 | 5.048782 | ACATGTTCATTTTTAGAAGCAGCGA | 60.049 | 36.000 | 0.00 | 0.00 | 0.00 | 4.93 |
4764 | 9843 | 5.156355 | ACATGTTCATTTTTAGAAGCAGCG | 58.844 | 37.500 | 0.00 | 0.00 | 0.00 | 5.18 |
4765 | 9844 | 8.693542 | AATACATGTTCATTTTTAGAAGCAGC | 57.306 | 30.769 | 2.30 | 0.00 | 0.00 | 5.25 |
4809 | 9888 | 9.453325 | GTTTCGAAATTCACCAACATTTTACTA | 57.547 | 29.630 | 14.69 | 0.00 | 0.00 | 1.82 |
4810 | 9889 | 7.976734 | TGTTTCGAAATTCACCAACATTTTACT | 59.023 | 29.630 | 14.69 | 0.00 | 0.00 | 2.24 |
4811 | 9890 | 8.121167 | TGTTTCGAAATTCACCAACATTTTAC | 57.879 | 30.769 | 14.69 | 0.00 | 0.00 | 2.01 |
4812 | 9891 | 8.703604 | TTGTTTCGAAATTCACCAACATTTTA | 57.296 | 26.923 | 14.69 | 0.00 | 0.00 | 1.52 |
4813 | 9892 | 7.602517 | TTGTTTCGAAATTCACCAACATTTT | 57.397 | 28.000 | 14.69 | 0.00 | 0.00 | 1.82 |
4814 | 9893 | 7.602517 | TTTGTTTCGAAATTCACCAACATTT | 57.397 | 28.000 | 14.69 | 0.00 | 0.00 | 2.32 |
4815 | 9894 | 7.784633 | ATTTGTTTCGAAATTCACCAACATT | 57.215 | 28.000 | 14.69 | 0.00 | 0.00 | 2.71 |
4816 | 9895 | 7.784633 | AATTTGTTTCGAAATTCACCAACAT | 57.215 | 28.000 | 14.69 | 6.87 | 31.21 | 2.71 |
4817 | 9896 | 7.227992 | GAATTTGTTTCGAAATTCACCAACA | 57.772 | 32.000 | 14.69 | 2.21 | 45.62 | 3.33 |
4824 | 9903 | 6.836577 | TTGGTGGAATTTGTTTCGAAATTC | 57.163 | 33.333 | 14.69 | 12.91 | 45.60 | 2.17 |
4825 | 9904 | 7.800155 | AATTGGTGGAATTTGTTTCGAAATT | 57.200 | 28.000 | 14.69 | 3.88 | 38.07 | 1.82 |
4826 | 9905 | 7.041440 | GGAAATTGGTGGAATTTGTTTCGAAAT | 60.041 | 33.333 | 14.69 | 0.00 | 43.12 | 2.17 |
4827 | 9906 | 6.258947 | GGAAATTGGTGGAATTTGTTTCGAAA | 59.741 | 34.615 | 6.47 | 6.47 | 43.12 | 3.46 |
4828 | 9907 | 5.755861 | GGAAATTGGTGGAATTTGTTTCGAA | 59.244 | 36.000 | 0.00 | 0.00 | 43.12 | 3.71 |
4829 | 9908 | 5.163405 | TGGAAATTGGTGGAATTTGTTTCGA | 60.163 | 36.000 | 0.00 | 0.00 | 43.12 | 3.71 |
4830 | 9909 | 5.053145 | TGGAAATTGGTGGAATTTGTTTCG | 58.947 | 37.500 | 0.00 | 0.00 | 43.12 | 3.46 |
4831 | 9910 | 6.287525 | TCTGGAAATTGGTGGAATTTGTTTC | 58.712 | 36.000 | 0.00 | 0.00 | 43.12 | 2.78 |
4832 | 9911 | 6.245890 | TCTGGAAATTGGTGGAATTTGTTT | 57.754 | 33.333 | 0.00 | 0.00 | 43.12 | 2.83 |
4833 | 9912 | 5.885449 | TCTGGAAATTGGTGGAATTTGTT | 57.115 | 34.783 | 0.00 | 0.00 | 43.12 | 2.83 |
4834 | 9913 | 5.885449 | TTCTGGAAATTGGTGGAATTTGT | 57.115 | 34.783 | 0.00 | 0.00 | 43.12 | 2.83 |
4835 | 9914 | 7.565323 | TTTTTCTGGAAATTGGTGGAATTTG | 57.435 | 32.000 | 0.00 | 0.00 | 43.12 | 2.32 |
4836 | 9915 | 7.779326 | ACATTTTTCTGGAAATTGGTGGAATTT | 59.221 | 29.630 | 7.89 | 0.00 | 45.29 | 1.82 |
4837 | 9916 | 7.289310 | ACATTTTTCTGGAAATTGGTGGAATT | 58.711 | 30.769 | 7.89 | 0.00 | 35.65 | 2.17 |
4838 | 9917 | 6.840527 | ACATTTTTCTGGAAATTGGTGGAAT | 58.159 | 32.000 | 7.89 | 0.00 | 34.47 | 3.01 |
4839 | 9918 | 6.245890 | ACATTTTTCTGGAAATTGGTGGAA | 57.754 | 33.333 | 7.89 | 0.00 | 34.47 | 3.53 |
4840 | 9919 | 5.885449 | ACATTTTTCTGGAAATTGGTGGA | 57.115 | 34.783 | 7.89 | 0.00 | 34.47 | 4.02 |
4841 | 9920 | 6.054295 | TGAACATTTTTCTGGAAATTGGTGG | 58.946 | 36.000 | 7.89 | 0.00 | 34.47 | 4.61 |
4842 | 9921 | 7.733402 | ATGAACATTTTTCTGGAAATTGGTG | 57.267 | 32.000 | 7.89 | 0.00 | 34.47 | 4.17 |
4843 | 9922 | 7.992033 | TCAATGAACATTTTTCTGGAAATTGGT | 59.008 | 29.630 | 7.89 | 1.64 | 34.47 | 3.67 |
4844 | 9923 | 8.380743 | TCAATGAACATTTTTCTGGAAATTGG | 57.619 | 30.769 | 7.89 | 0.00 | 34.47 | 3.16 |
4850 | 9929 | 9.519191 | TCTAGAATCAATGAACATTTTTCTGGA | 57.481 | 29.630 | 19.60 | 19.60 | 36.60 | 3.86 |
4861 | 9940 | 9.869844 | CGGTGAATATTTCTAGAATCAATGAAC | 57.130 | 33.333 | 5.89 | 0.71 | 0.00 | 3.18 |
4862 | 9941 | 9.830975 | TCGGTGAATATTTCTAGAATCAATGAA | 57.169 | 29.630 | 5.89 | 0.00 | 0.00 | 2.57 |
4866 | 9945 | 9.830975 | TGAATCGGTGAATATTTCTAGAATCAA | 57.169 | 29.630 | 5.89 | 0.00 | 0.00 | 2.57 |
4867 | 9946 | 9.830975 | TTGAATCGGTGAATATTTCTAGAATCA | 57.169 | 29.630 | 5.89 | 4.19 | 0.00 | 2.57 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.