Multiple sequence alignment - TraesCS5B01G556100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G556100 chr5B 100.000 2558 0 0 1 2558 704873689 704871132 0.000000e+00 4724.0
1 TraesCS5B01G556100 chr4A 90.526 665 45 11 1909 2558 610493223 610493884 0.000000e+00 863.0
2 TraesCS5B01G556100 chr4A 94.835 484 19 1 1112 1595 610491480 610491957 0.000000e+00 750.0
3 TraesCS5B01G556100 chr4A 90.854 164 9 4 1106 1266 611045696 611045536 5.540000e-52 215.0
4 TraesCS5B01G556100 chr4A 100.000 43 0 0 1755 1797 610492199 610492241 2.110000e-11 80.5
5 TraesCS5B01G556100 chr5D 84.233 926 88 28 1650 2558 558265945 558266829 0.000000e+00 848.0
6 TraesCS5B01G556100 chr5D 83.744 892 52 32 810 1663 558265097 558265933 0.000000e+00 758.0
7 TraesCS5B01G556100 chr5D 88.690 168 18 1 814 981 558251629 558251795 1.200000e-48 204.0
8 TraesCS5B01G556100 chr5D 91.852 135 11 0 183 317 558263990 558264124 3.360000e-44 189.0
9 TraesCS5B01G556100 chr1D 83.648 159 22 4 194 350 97499187 97499343 2.050000e-31 147.0
10 TraesCS5B01G556100 chr6A 83.226 155 22 4 189 341 583298429 583298277 3.430000e-29 139.0
11 TraesCS5B01G556100 chr6A 82.667 150 21 5 194 341 444098184 444098330 7.430000e-26 128.0
12 TraesCS5B01G556100 chr3D 82.803 157 24 3 195 350 615404891 615404737 1.230000e-28 137.0
13 TraesCS5B01G556100 chr3D 81.818 154 23 5 199 349 179520489 179520338 9.610000e-25 124.0
14 TraesCS5B01G556100 chr7A 83.221 149 22 3 194 341 616677695 616677549 1.600000e-27 134.0
15 TraesCS5B01G556100 chrUn 82.000 150 23 4 194 341 316183168 316183315 9.610000e-25 124.0
16 TraesCS5B01G556100 chrUn 82.000 150 23 4 194 341 316189895 316189748 9.610000e-25 124.0
17 TraesCS5B01G556100 chr1B 90.741 54 5 0 441 494 200462095 200462148 3.530000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G556100 chr5B 704871132 704873689 2557 True 4724.000000 4724 100.000000 1 2558 1 chr5B.!!$R1 2557
1 TraesCS5B01G556100 chr4A 610491480 610493884 2404 False 564.500000 863 95.120333 1112 2558 3 chr4A.!!$F1 1446
2 TraesCS5B01G556100 chr5D 558263990 558266829 2839 False 598.333333 848 86.609667 183 2558 3 chr5D.!!$F2 2375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.031721 GGGCTACTAACGATGTCCCG 59.968 60.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 2109 0.609957 AGCAGCAGCAGCAAACCATA 60.61 50.0 12.92 0.0 45.49 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.957684 AAATACCTAGAGAATCCCCACG 57.042 45.455 0.00 0.00 33.66 4.94
50 51 3.614568 ATACCTAGAGAATCCCCACGT 57.385 47.619 0.00 0.00 33.66 4.49
51 52 1.777941 ACCTAGAGAATCCCCACGTC 58.222 55.000 0.00 0.00 33.66 4.34
52 53 1.006758 ACCTAGAGAATCCCCACGTCA 59.993 52.381 0.00 0.00 33.66 4.35
53 54 2.108168 CCTAGAGAATCCCCACGTCAA 58.892 52.381 0.00 0.00 33.66 3.18
54 55 2.159085 CCTAGAGAATCCCCACGTCAAC 60.159 54.545 0.00 0.00 33.66 3.18
55 56 1.348064 AGAGAATCCCCACGTCAACA 58.652 50.000 0.00 0.00 33.66 3.33
56 57 1.002087 AGAGAATCCCCACGTCAACAC 59.998 52.381 0.00 0.00 33.66 3.32
57 58 4.548318 AGAGAATCCCCACGTCAACACG 62.548 54.545 0.00 0.00 44.79 4.49
66 67 2.732094 GTCAACACGACCGGACGG 60.732 66.667 28.68 19.53 38.85 4.79
76 77 3.884900 CCGGACGGTCACATTTCC 58.115 61.111 10.76 0.00 0.00 3.13
77 78 1.295423 CCGGACGGTCACATTTCCT 59.705 57.895 10.76 0.00 0.00 3.36
78 79 0.739813 CCGGACGGTCACATTTCCTC 60.740 60.000 10.76 0.00 0.00 3.71
79 80 0.246635 CGGACGGTCACATTTCCTCT 59.753 55.000 10.76 0.00 0.00 3.69
80 81 1.736032 CGGACGGTCACATTTCCTCTC 60.736 57.143 10.76 0.00 0.00 3.20
81 82 1.405661 GGACGGTCACATTTCCTCTCC 60.406 57.143 10.76 0.00 0.00 3.71
82 83 0.613777 ACGGTCACATTTCCTCTCCC 59.386 55.000 0.00 0.00 0.00 4.30
83 84 0.460284 CGGTCACATTTCCTCTCCCG 60.460 60.000 0.00 0.00 0.00 5.14
84 85 0.744771 GGTCACATTTCCTCTCCCGC 60.745 60.000 0.00 0.00 0.00 6.13
85 86 0.036388 GTCACATTTCCTCTCCCGCA 60.036 55.000 0.00 0.00 0.00 5.69
86 87 0.036388 TCACATTTCCTCTCCCGCAC 60.036 55.000 0.00 0.00 0.00 5.34
87 88 0.036010 CACATTTCCTCTCCCGCACT 60.036 55.000 0.00 0.00 0.00 4.40
88 89 0.693049 ACATTTCCTCTCCCGCACTT 59.307 50.000 0.00 0.00 0.00 3.16
89 90 1.339151 ACATTTCCTCTCCCGCACTTC 60.339 52.381 0.00 0.00 0.00 3.01
90 91 0.253327 ATTTCCTCTCCCGCACTTCC 59.747 55.000 0.00 0.00 0.00 3.46
91 92 1.838073 TTTCCTCTCCCGCACTTCCC 61.838 60.000 0.00 0.00 0.00 3.97
92 93 3.787001 CCTCTCCCGCACTTCCCC 61.787 72.222 0.00 0.00 0.00 4.81
93 94 3.003173 CTCTCCCGCACTTCCCCA 61.003 66.667 0.00 0.00 0.00 4.96
94 95 3.316573 CTCTCCCGCACTTCCCCAC 62.317 68.421 0.00 0.00 0.00 4.61
95 96 4.410400 CTCCCGCACTTCCCCACC 62.410 72.222 0.00 0.00 0.00 4.61
98 99 4.278513 CCGCACTTCCCCACCCAA 62.279 66.667 0.00 0.00 0.00 4.12
99 100 2.203422 CGCACTTCCCCACCCAAA 60.203 61.111 0.00 0.00 0.00 3.28
100 101 2.561037 CGCACTTCCCCACCCAAAC 61.561 63.158 0.00 0.00 0.00 2.93
101 102 2.207229 GCACTTCCCCACCCAAACC 61.207 63.158 0.00 0.00 0.00 3.27
102 103 1.541672 CACTTCCCCACCCAAACCT 59.458 57.895 0.00 0.00 0.00 3.50
103 104 0.774908 CACTTCCCCACCCAAACCTA 59.225 55.000 0.00 0.00 0.00 3.08
104 105 1.073098 ACTTCCCCACCCAAACCTAG 58.927 55.000 0.00 0.00 0.00 3.02
105 106 0.323451 CTTCCCCACCCAAACCTAGC 60.323 60.000 0.00 0.00 0.00 3.42
106 107 1.068943 TTCCCCACCCAAACCTAGCA 61.069 55.000 0.00 0.00 0.00 3.49
107 108 1.000896 CCCCACCCAAACCTAGCAG 60.001 63.158 0.00 0.00 0.00 4.24
108 109 1.678970 CCCACCCAAACCTAGCAGC 60.679 63.158 0.00 0.00 0.00 5.25
109 110 1.074775 CCACCCAAACCTAGCAGCA 59.925 57.895 0.00 0.00 0.00 4.41
110 111 0.539438 CCACCCAAACCTAGCAGCAA 60.539 55.000 0.00 0.00 0.00 3.91
111 112 0.883833 CACCCAAACCTAGCAGCAAG 59.116 55.000 0.00 0.00 0.00 4.01
112 113 0.895559 ACCCAAACCTAGCAGCAAGC 60.896 55.000 0.00 0.00 46.19 4.01
121 122 2.428071 GCAGCAAGCGTGAAGTGC 60.428 61.111 2.99 5.09 38.59 4.40
123 124 3.337619 AGCAAGCGTGAAGTGCTG 58.662 55.556 2.99 0.00 46.58 4.41
124 125 2.253452 GCAAGCGTGAAGTGCTGG 59.747 61.111 2.99 0.00 43.14 4.85
125 126 2.253452 CAAGCGTGAAGTGCTGGC 59.747 61.111 0.00 0.00 43.14 4.85
126 127 2.980233 AAGCGTGAAGTGCTGGCC 60.980 61.111 0.00 0.00 43.14 5.36
130 131 4.329545 GTGAAGTGCTGGCCGGGA 62.330 66.667 15.02 8.03 0.00 5.14
131 132 4.020617 TGAAGTGCTGGCCGGGAG 62.021 66.667 15.02 0.00 0.00 4.30
141 142 4.785453 GCCGGGAGCCAAGGTCAG 62.785 72.222 2.18 0.00 34.35 3.51
142 143 4.785453 CCGGGAGCCAAGGTCAGC 62.785 72.222 0.00 0.00 0.00 4.26
143 144 4.020617 CGGGAGCCAAGGTCAGCA 62.021 66.667 0.00 0.00 0.00 4.41
144 145 2.360475 GGGAGCCAAGGTCAGCAC 60.360 66.667 0.00 0.00 0.00 4.40
145 146 2.431683 GGAGCCAAGGTCAGCACA 59.568 61.111 0.00 0.00 0.00 4.57
146 147 1.673665 GGAGCCAAGGTCAGCACAG 60.674 63.158 0.00 0.00 0.00 3.66
147 148 1.372683 GAGCCAAGGTCAGCACAGA 59.627 57.895 0.00 0.00 0.00 3.41
148 149 0.673022 GAGCCAAGGTCAGCACAGAG 60.673 60.000 0.00 0.00 0.00 3.35
149 150 2.331132 GCCAAGGTCAGCACAGAGC 61.331 63.158 0.00 0.00 46.19 4.09
158 159 4.767255 GCACAGAGCTCCCCGGTG 62.767 72.222 10.93 14.57 41.15 4.94
159 160 4.767255 CACAGAGCTCCCCGGTGC 62.767 72.222 10.93 1.40 35.16 5.01
161 162 4.020617 CAGAGCTCCCCGGTGCAA 62.021 66.667 10.93 0.00 37.12 4.08
162 163 3.011517 AGAGCTCCCCGGTGCAAT 61.012 61.111 10.93 0.00 37.12 3.56
163 164 2.514824 GAGCTCCCCGGTGCAATC 60.515 66.667 0.87 0.00 37.12 2.67
164 165 4.115199 AGCTCCCCGGTGCAATCC 62.115 66.667 10.22 0.00 37.12 3.01
165 166 4.424711 GCTCCCCGGTGCAATCCA 62.425 66.667 0.00 0.00 35.06 3.41
166 167 2.354729 CTCCCCGGTGCAATCCAA 59.645 61.111 0.00 0.00 0.00 3.53
167 168 2.034999 TCCCCGGTGCAATCCAAC 59.965 61.111 0.00 0.00 0.00 3.77
168 169 2.282816 CCCCGGTGCAATCCAACA 60.283 61.111 0.00 0.00 0.00 3.33
169 170 1.905843 CCCCGGTGCAATCCAACAA 60.906 57.895 0.00 0.00 0.00 2.83
170 171 1.257055 CCCCGGTGCAATCCAACAAT 61.257 55.000 0.00 0.00 0.00 2.71
171 172 0.607620 CCCGGTGCAATCCAACAATT 59.392 50.000 0.00 0.00 0.00 2.32
172 173 1.821753 CCCGGTGCAATCCAACAATTA 59.178 47.619 0.00 0.00 0.00 1.40
173 174 2.232452 CCCGGTGCAATCCAACAATTAA 59.768 45.455 0.00 0.00 0.00 1.40
174 175 3.118811 CCCGGTGCAATCCAACAATTAAT 60.119 43.478 0.00 0.00 0.00 1.40
175 176 4.111916 CCGGTGCAATCCAACAATTAATC 58.888 43.478 0.00 0.00 0.00 1.75
176 177 4.381398 CCGGTGCAATCCAACAATTAATCA 60.381 41.667 0.00 0.00 0.00 2.57
177 178 5.167121 CGGTGCAATCCAACAATTAATCAA 58.833 37.500 0.00 0.00 0.00 2.57
178 179 5.289193 CGGTGCAATCCAACAATTAATCAAG 59.711 40.000 0.00 0.00 0.00 3.02
179 180 5.581874 GGTGCAATCCAACAATTAATCAAGG 59.418 40.000 0.00 0.00 0.00 3.61
180 181 6.397272 GTGCAATCCAACAATTAATCAAGGA 58.603 36.000 0.00 0.00 0.00 3.36
181 182 6.873076 GTGCAATCCAACAATTAATCAAGGAA 59.127 34.615 0.00 0.00 0.00 3.36
231 232 0.863799 GTTTTCAAGACGGACGACCC 59.136 55.000 0.00 0.00 0.00 4.46
256 257 3.528532 ACGAAGAACAACTCGGAAAAGT 58.471 40.909 0.00 0.00 0.00 2.66
258 259 3.554324 CGAAGAACAACTCGGAAAAGTCA 59.446 43.478 0.00 0.00 0.00 3.41
263 264 4.411256 ACAACTCGGAAAAGTCAAGGTA 57.589 40.909 0.00 0.00 0.00 3.08
266 267 2.624838 ACTCGGAAAAGTCAAGGTACGA 59.375 45.455 0.00 0.00 0.00 3.43
282 283 0.680061 ACGACCCAGACTTGAAGACC 59.320 55.000 0.00 0.00 0.00 3.85
306 307 2.029623 TCAGGGGCTACTAACGATGTC 58.970 52.381 0.00 0.00 0.00 3.06
309 310 0.031721 GGGCTACTAACGATGTCCCG 59.968 60.000 0.00 0.00 0.00 5.14
310 311 1.027357 GGCTACTAACGATGTCCCGA 58.973 55.000 0.00 0.00 0.00 5.14
324 325 4.583086 CCGACTAGGGGGTCTCTC 57.417 66.667 0.00 0.00 35.97 3.20
325 326 1.613610 CCGACTAGGGGGTCTCTCA 59.386 63.158 0.00 0.00 35.97 3.27
326 327 0.033405 CCGACTAGGGGGTCTCTCAA 60.033 60.000 0.00 0.00 35.97 3.02
339 340 2.737252 GTCTCTCAACACATCGTTTCCC 59.263 50.000 0.00 0.00 34.86 3.97
341 342 0.796312 CTCAACACATCGTTTCCCGG 59.204 55.000 0.00 0.00 34.86 5.73
342 343 0.393448 TCAACACATCGTTTCCCGGA 59.607 50.000 0.73 0.00 34.86 5.14
347 348 1.295423 CATCGTTTCCCGGACAGGT 59.705 57.895 0.73 0.00 38.74 4.00
377 719 1.681793 CGGACATGGTCGAATCCTACT 59.318 52.381 0.00 0.00 32.65 2.57
380 722 2.866762 GACATGGTCGAATCCTACTTGC 59.133 50.000 0.00 0.00 0.00 4.01
388 730 1.394917 GAATCCTACTTGCACTGCACG 59.605 52.381 2.26 4.37 38.71 5.34
389 731 1.021390 ATCCTACTTGCACTGCACGC 61.021 55.000 2.26 0.00 38.71 5.34
400 746 3.197092 TGCACGCGCAGATGATGG 61.197 61.111 5.73 0.00 45.36 3.51
401 747 4.602696 GCACGCGCAGATGATGGC 62.603 66.667 5.73 0.00 38.36 4.40
442 788 2.187946 GTCCTGCACATCCCCGAG 59.812 66.667 0.00 0.00 0.00 4.63
445 791 4.100084 CTGCACATCCCCGAGGCA 62.100 66.667 0.00 0.00 0.00 4.75
450 796 4.530857 CATCCCCGAGGCACGACC 62.531 72.222 5.74 0.00 45.77 4.79
454 800 4.760047 CCCGAGGCACGACCAAGG 62.760 72.222 5.74 0.00 45.77 3.61
463 809 4.717629 CGACCAAGGAGCACGCGA 62.718 66.667 15.93 0.00 0.00 5.87
481 832 3.140814 GCGGGGCAAACAGGATCC 61.141 66.667 2.48 2.48 0.00 3.36
484 835 2.674754 GGGCAAACAGGATCCCGA 59.325 61.111 8.55 0.00 0.00 5.14
493 844 1.379977 AGGATCCCGACAAGCTCGA 60.380 57.895 8.55 0.00 46.14 4.04
496 847 1.945354 GATCCCGACAAGCTCGACCA 61.945 60.000 0.00 0.00 46.14 4.02
497 848 1.330655 ATCCCGACAAGCTCGACCAT 61.331 55.000 0.00 0.00 46.14 3.55
498 849 1.811266 CCCGACAAGCTCGACCATG 60.811 63.158 0.00 0.00 46.14 3.66
499 850 1.811266 CCGACAAGCTCGACCATGG 60.811 63.158 11.19 11.19 46.14 3.66
504 855 2.894257 AAGCTCGACCATGGTGGCA 61.894 57.895 25.52 10.28 42.67 4.92
506 857 2.124983 CTCGACCATGGTGGCAGG 60.125 66.667 25.52 10.72 42.67 4.85
507 858 2.927856 TCGACCATGGTGGCAGGT 60.928 61.111 25.52 0.00 42.67 4.00
508 859 2.747460 CGACCATGGTGGCAGGTG 60.747 66.667 25.52 0.00 42.67 4.00
530 883 4.421479 CGACGCGAGCAGGGAAGT 62.421 66.667 15.93 0.00 36.53 3.01
537 890 1.464734 CGAGCAGGGAAGTGTCTAGA 58.535 55.000 0.00 0.00 0.00 2.43
568 923 1.614317 CGGATGCAAAAGAAGGGGAGT 60.614 52.381 0.00 0.00 0.00 3.85
574 929 1.354368 CAAAAGAAGGGGAGTAGGCCA 59.646 52.381 5.01 0.00 0.00 5.36
579 934 4.433194 GGGGAGTAGGCCAGGGGT 62.433 72.222 5.01 0.00 0.00 4.95
581 936 2.285442 GGAGTAGGCCAGGGGTGT 60.285 66.667 5.01 0.00 0.00 4.16
582 937 1.002533 GGAGTAGGCCAGGGGTGTA 59.997 63.158 5.01 0.00 0.00 2.90
583 938 1.335882 GGAGTAGGCCAGGGGTGTAC 61.336 65.000 5.01 0.00 0.00 2.90
584 939 0.616679 GAGTAGGCCAGGGGTGTACA 60.617 60.000 5.01 0.00 0.00 2.90
587 942 0.907704 TAGGCCAGGGGTGTACACAG 60.908 60.000 26.51 12.99 0.00 3.66
598 953 0.756070 TGTACACAGGGACCACGACA 60.756 55.000 0.00 0.00 0.00 4.35
601 956 1.344065 ACACAGGGACCACGACATTA 58.656 50.000 0.00 0.00 0.00 1.90
606 961 0.179119 GGGACCACGACATTACCGAG 60.179 60.000 0.00 0.00 0.00 4.63
607 962 0.804933 GGACCACGACATTACCGAGC 60.805 60.000 0.00 0.00 0.00 5.03
608 963 0.108992 GACCACGACATTACCGAGCA 60.109 55.000 0.00 0.00 0.00 4.26
645 1000 2.829384 GCCTTGACAGTGGGTCCCA 61.829 63.158 6.47 6.47 46.38 4.37
658 1019 1.671379 GTCCCACCTGTCGGCTTTC 60.671 63.158 0.00 0.00 0.00 2.62
663 1024 1.071471 ACCTGTCGGCTTTCCTGTG 59.929 57.895 0.00 0.00 0.00 3.66
676 1037 2.093306 TCCTGTGAAAACGCGATCAT 57.907 45.000 15.93 0.00 0.00 2.45
678 1039 2.415168 TCCTGTGAAAACGCGATCATTC 59.585 45.455 15.93 11.74 0.00 2.67
682 1043 2.908626 GTGAAAACGCGATCATTCAACC 59.091 45.455 15.93 3.33 33.93 3.77
685 1046 1.808411 AACGCGATCATTCAACCACT 58.192 45.000 15.93 0.00 0.00 4.00
686 1047 1.808411 ACGCGATCATTCAACCACTT 58.192 45.000 15.93 0.00 0.00 3.16
687 1048 1.464608 ACGCGATCATTCAACCACTTG 59.535 47.619 15.93 0.00 0.00 3.16
688 1049 1.202065 CGCGATCATTCAACCACTTGG 60.202 52.381 0.00 0.00 42.17 3.61
741 1155 1.865865 TGAGCTCCAAGTTGAACGTC 58.134 50.000 12.15 0.00 0.00 4.34
743 1157 2.062519 GAGCTCCAAGTTGAACGTCTC 58.937 52.381 0.87 0.28 0.00 3.36
755 1169 5.817816 AGTTGAACGTCTCTTTCACTCAAAT 59.182 36.000 0.00 0.00 32.65 2.32
756 1170 5.907197 TGAACGTCTCTTTCACTCAAATC 57.093 39.130 0.00 0.00 0.00 2.17
757 1171 5.601662 TGAACGTCTCTTTCACTCAAATCT 58.398 37.500 0.00 0.00 0.00 2.40
758 1172 5.692204 TGAACGTCTCTTTCACTCAAATCTC 59.308 40.000 0.00 0.00 0.00 2.75
759 1173 4.561105 ACGTCTCTTTCACTCAAATCTCC 58.439 43.478 0.00 0.00 0.00 3.71
760 1174 4.282195 ACGTCTCTTTCACTCAAATCTCCT 59.718 41.667 0.00 0.00 0.00 3.69
761 1175 4.624882 CGTCTCTTTCACTCAAATCTCCTG 59.375 45.833 0.00 0.00 0.00 3.86
762 1176 4.934602 GTCTCTTTCACTCAAATCTCCTGG 59.065 45.833 0.00 0.00 0.00 4.45
763 1177 3.679389 TCTTTCACTCAAATCTCCTGGC 58.321 45.455 0.00 0.00 0.00 4.85
791 1259 1.325355 GGGCATGGGATCTGTGAATG 58.675 55.000 0.00 0.00 0.00 2.67
792 1260 0.672342 GGCATGGGATCTGTGAATGC 59.328 55.000 0.00 0.00 42.26 3.56
794 1262 1.961394 GCATGGGATCTGTGAATGCAT 59.039 47.619 0.00 0.00 42.48 3.96
803 1296 1.001624 TGTGAATGCATCGCTTCGAG 58.998 50.000 0.00 0.00 39.91 4.04
807 1300 3.062099 GTGAATGCATCGCTTCGAGTTTA 59.938 43.478 0.00 0.00 39.91 2.01
808 1301 3.306973 TGAATGCATCGCTTCGAGTTTAG 59.693 43.478 0.00 0.00 39.91 1.85
853 1352 2.369257 ATCAGGCCGACATACGCCAG 62.369 60.000 0.00 0.00 39.38 4.85
854 1353 3.075005 AGGCCGACATACGCCAGT 61.075 61.111 0.00 0.00 39.38 4.00
855 1354 2.890474 GGCCGACATACGCCAGTG 60.890 66.667 0.00 0.00 41.07 3.66
867 1366 4.087892 CCAGTGGCCCGAGTCCAG 62.088 72.222 0.00 0.00 33.63 3.86
890 1389 4.109675 CCCGTACCCAGCCCAAGG 62.110 72.222 0.00 0.00 0.00 3.61
914 1413 4.954118 ACCCACTCCACCTCGCCA 62.954 66.667 0.00 0.00 0.00 5.69
916 1415 2.358737 CCACTCCACCTCGCCAAC 60.359 66.667 0.00 0.00 0.00 3.77
918 1417 2.847234 ACTCCACCTCGCCAACCA 60.847 61.111 0.00 0.00 0.00 3.67
919 1418 2.046892 CTCCACCTCGCCAACCAG 60.047 66.667 0.00 0.00 0.00 4.00
920 1419 2.525629 TCCACCTCGCCAACCAGA 60.526 61.111 0.00 0.00 0.00 3.86
921 1420 2.046892 CCACCTCGCCAACCAGAG 60.047 66.667 0.00 0.00 0.00 3.35
922 1421 2.583441 CCACCTCGCCAACCAGAGA 61.583 63.158 0.00 0.00 36.65 3.10
923 1422 1.371183 CACCTCGCCAACCAGAGAA 59.629 57.895 0.00 0.00 36.65 2.87
924 1423 0.036010 CACCTCGCCAACCAGAGAAT 60.036 55.000 0.00 0.00 36.65 2.40
941 1440 0.172578 AATGAGAATCGCCACGTCGA 59.827 50.000 0.00 1.57 43.09 4.20
942 1441 0.525668 ATGAGAATCGCCACGTCGAC 60.526 55.000 5.18 5.18 41.62 4.20
989 1498 0.953960 CGCACTCCACCCAAACCTAC 60.954 60.000 0.00 0.00 0.00 3.18
992 1501 0.769247 ACTCCACCCAAACCTACCAC 59.231 55.000 0.00 0.00 0.00 4.16
1048 1563 2.272797 CCGTCCTCCTCCTCGTCT 59.727 66.667 0.00 0.00 0.00 4.18
1049 1564 1.820481 CCGTCCTCCTCCTCGTCTC 60.820 68.421 0.00 0.00 0.00 3.36
1051 1566 1.820481 GTCCTCCTCCTCGTCTCCG 60.820 68.421 0.00 0.00 0.00 4.63
1052 1567 2.272797 CCTCCTCCTCGTCTCCGT 59.727 66.667 0.00 0.00 35.01 4.69
1053 1568 1.820481 CCTCCTCCTCGTCTCCGTC 60.820 68.421 0.00 0.00 35.01 4.79
1054 1569 1.222387 CTCCTCCTCGTCTCCGTCT 59.778 63.158 0.00 0.00 35.01 4.18
1055 1570 0.812412 CTCCTCCTCGTCTCCGTCTC 60.812 65.000 0.00 0.00 35.01 3.36
1056 1571 1.820481 CCTCCTCGTCTCCGTCTCC 60.820 68.421 0.00 0.00 35.01 3.71
1057 1572 2.125229 TCCTCGTCTCCGTCTCCG 60.125 66.667 0.00 0.00 35.01 4.63
1058 1573 2.436292 CCTCGTCTCCGTCTCCGT 60.436 66.667 0.00 0.00 35.01 4.69
1059 1574 2.462782 CCTCGTCTCCGTCTCCGTC 61.463 68.421 0.00 0.00 35.01 4.79
1060 1575 1.448189 CTCGTCTCCGTCTCCGTCT 60.448 63.158 0.00 0.00 35.01 4.18
1061 1576 1.422950 CTCGTCTCCGTCTCCGTCTC 61.423 65.000 0.00 0.00 35.01 3.36
1062 1577 2.462782 CGTCTCCGTCTCCGTCTCC 61.463 68.421 0.00 0.00 0.00 3.71
1063 1578 2.125229 TCTCCGTCTCCGTCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
1064 1579 2.436292 CTCCGTCTCCGTCTCCGT 60.436 66.667 0.00 0.00 0.00 4.69
1067 1582 4.517703 CGTCTCCGTCTCCGTCGC 62.518 72.222 0.00 0.00 0.00 5.19
1074 1589 4.131088 GTCTCCGTCGCCTCCCAC 62.131 72.222 0.00 0.00 0.00 4.61
1080 1595 2.682494 GTCGCCTCCCACCCACTA 60.682 66.667 0.00 0.00 0.00 2.74
1088 1603 3.470888 CCACCCACTAGCCTCGGG 61.471 72.222 5.75 5.75 46.22 5.14
1089 1604 2.363795 CACCCACTAGCCTCGGGA 60.364 66.667 12.72 0.00 43.21 5.14
1090 1605 2.363925 ACCCACTAGCCTCGGGAC 60.364 66.667 12.72 0.00 43.21 4.46
1091 1606 2.042843 CCCACTAGCCTCGGGACT 60.043 66.667 1.70 0.00 43.21 3.85
1092 1607 2.427245 CCCACTAGCCTCGGGACTG 61.427 68.421 1.70 0.00 43.21 3.51
1093 1608 1.379977 CCACTAGCCTCGGGACTGA 60.380 63.158 0.00 0.00 0.00 3.41
1094 1609 0.970937 CCACTAGCCTCGGGACTGAA 60.971 60.000 0.00 0.00 0.00 3.02
1095 1610 0.457851 CACTAGCCTCGGGACTGAAG 59.542 60.000 0.00 0.00 0.00 3.02
1096 1611 0.039911 ACTAGCCTCGGGACTGAAGT 59.960 55.000 0.00 0.00 0.00 3.01
1097 1612 1.284198 ACTAGCCTCGGGACTGAAGTA 59.716 52.381 0.00 0.00 0.00 2.24
1098 1613 2.091775 ACTAGCCTCGGGACTGAAGTAT 60.092 50.000 0.00 0.00 0.00 2.12
1099 1614 1.867363 AGCCTCGGGACTGAAGTATT 58.133 50.000 0.00 0.00 0.00 1.89
1101 1616 1.202545 GCCTCGGGACTGAAGTATTCC 60.203 57.143 0.00 0.00 46.93 3.01
1102 1617 1.413077 CCTCGGGACTGAAGTATTCCC 59.587 57.143 0.00 0.00 46.93 3.97
1103 1618 1.413077 CTCGGGACTGAAGTATTCCCC 59.587 57.143 0.18 0.00 46.93 4.81
1105 1620 0.468648 GGGACTGAAGTATTCCCCGG 59.531 60.000 0.00 0.00 46.93 5.73
1106 1621 0.179054 GGACTGAAGTATTCCCCGGC 60.179 60.000 0.00 0.00 46.93 6.13
1107 1622 0.529992 GACTGAAGTATTCCCCGGCG 60.530 60.000 0.00 0.00 46.93 6.46
1108 1623 1.227556 CTGAAGTATTCCCCGGCGG 60.228 63.158 21.46 21.46 46.93 6.13
1168 1683 3.022914 GGATCGGCTACGCGTTCG 61.023 66.667 20.78 19.32 40.69 3.95
1585 2109 6.292865 CGTGCACGAGTAATAAATCATCCAAT 60.293 38.462 34.93 0.00 43.02 3.16
1597 2121 4.595762 ATCATCCAATATGGTTTGCTGC 57.404 40.909 0.00 0.00 39.03 5.25
1601 2125 1.479323 CCAATATGGTTTGCTGCTGCT 59.521 47.619 17.00 0.00 34.66 4.24
1602 2126 2.536365 CAATATGGTTTGCTGCTGCTG 58.464 47.619 17.00 0.77 40.48 4.41
1603 2127 0.458669 ATATGGTTTGCTGCTGCTGC 59.541 50.000 22.51 22.51 40.48 5.25
1626 2188 2.101700 GCTGCTGCAATCTACCACC 58.898 57.895 11.11 0.00 39.41 4.61
1627 2189 0.393537 GCTGCTGCAATCTACCACCT 60.394 55.000 11.11 0.00 39.41 4.00
1628 2190 1.661341 CTGCTGCAATCTACCACCTC 58.339 55.000 3.02 0.00 0.00 3.85
1647 2209 8.993424 ACCACCTCTATGTAAATTATGAACTCT 58.007 33.333 0.00 0.00 0.00 3.24
1665 2253 6.603201 TGAACTCTCACTTCCACTTTGATTTT 59.397 34.615 0.00 0.00 0.00 1.82
1666 2254 6.625873 ACTCTCACTTCCACTTTGATTTTC 57.374 37.500 0.00 0.00 0.00 2.29
1687 2339 6.772360 TTCTATGCAAATTATGAACTGCCA 57.228 33.333 0.00 0.00 33.78 4.92
1708 2360 4.457810 CACTTCGAGTTGTGCTATGTTTG 58.542 43.478 3.12 0.00 0.00 2.93
1709 2361 3.498397 ACTTCGAGTTGTGCTATGTTTGG 59.502 43.478 0.00 0.00 0.00 3.28
1715 2367 4.144297 AGTTGTGCTATGTTTGGTGTGAT 58.856 39.130 0.00 0.00 0.00 3.06
1734 2386 4.533707 GTGATATCCATCCAGATCCAGGAA 59.466 45.833 8.43 0.00 38.93 3.36
1740 2392 2.249535 CCAGATCCAGGAATGCGCG 61.250 63.158 0.00 0.00 0.00 6.86
1749 2401 1.003545 CAGGAATGCGCGATCGAATTT 60.004 47.619 21.57 6.01 43.65 1.82
1750 2402 1.261619 AGGAATGCGCGATCGAATTTC 59.738 47.619 21.57 13.28 43.65 2.17
1751 2403 1.660333 GGAATGCGCGATCGAATTTCC 60.660 52.381 21.57 19.08 43.65 3.13
1753 2405 1.151777 ATGCGCGATCGAATTTCCGT 61.152 50.000 21.57 0.00 38.10 4.69
1797 2449 5.723672 AGAGTTCCTTGTCGAATTCAGTA 57.276 39.130 6.22 0.00 32.49 2.74
1852 3385 2.300433 TGCTTCTGCATTTGACACTGT 58.700 42.857 0.00 0.00 45.31 3.55
1857 3390 3.133691 TCTGCATTTGACACTGTCAGTC 58.866 45.455 11.67 4.16 43.69 3.51
1858 3391 2.874086 CTGCATTTGACACTGTCAGTCA 59.126 45.455 11.67 7.86 43.69 3.41
1879 3412 5.420104 GTCAATCCCTCTGTTCCATTTGAAT 59.580 40.000 0.00 0.00 34.90 2.57
1881 3414 6.497954 TCAATCCCTCTGTTCCATTTGAATTT 59.502 34.615 0.00 0.00 34.90 1.82
1888 3421 7.384932 CCTCTGTTCCATTTGAATTTAAACCAC 59.615 37.037 0.00 0.00 34.90 4.16
1889 3422 7.786030 TCTGTTCCATTTGAATTTAAACCACA 58.214 30.769 0.00 0.00 34.90 4.17
1891 3424 8.970859 TGTTCCATTTGAATTTAAACCACAAT 57.029 26.923 0.00 0.00 34.90 2.71
1911 3460 7.714813 CCACAATAAAAATTATGGAATGGGGTC 59.285 37.037 0.00 0.00 0.00 4.46
1999 3562 1.939934 GGGAACAAGCAAGGCAAAAAC 59.060 47.619 0.00 0.00 0.00 2.43
2052 3615 5.757320 AGCATCATCTTGACATTAGTACAGC 59.243 40.000 0.00 0.00 0.00 4.40
2063 3626 0.815734 TAGTACAGCGGCCAAGACTC 59.184 55.000 2.24 0.00 0.00 3.36
2081 3644 3.826729 GACTCCAAAGGCAAGTACCAAAT 59.173 43.478 0.00 0.00 0.00 2.32
2085 3648 3.320541 CCAAAGGCAAGTACCAAATGACA 59.679 43.478 0.00 0.00 0.00 3.58
2112 3675 5.934625 ACTCGACTCTTTTCAGCATTACATT 59.065 36.000 0.00 0.00 0.00 2.71
2118 3681 8.059798 ACTCTTTTCAGCATTACATTAGCAAT 57.940 30.769 0.00 0.00 0.00 3.56
2119 3682 7.972277 ACTCTTTTCAGCATTACATTAGCAATG 59.028 33.333 7.16 7.16 44.48 2.82
2173 3743 1.439644 GCCATCAGGGACTCGTCTC 59.560 63.158 0.00 0.00 40.01 3.36
2174 3744 1.323271 GCCATCAGGGACTCGTCTCA 61.323 60.000 0.00 0.00 40.01 3.27
2183 3753 2.347731 GGACTCGTCTCATCCAAAACC 58.652 52.381 0.00 0.00 32.35 3.27
2194 3764 3.117701 TCATCCAAAACCCTCAACACTCA 60.118 43.478 0.00 0.00 0.00 3.41
2204 3774 7.687941 AACCCTCAACACTCATATTACAAAG 57.312 36.000 0.00 0.00 0.00 2.77
2205 3775 6.779860 ACCCTCAACACTCATATTACAAAGT 58.220 36.000 0.00 0.00 0.00 2.66
2215 3785 6.649141 ACTCATATTACAAAGTGAAGCGAACA 59.351 34.615 0.00 0.00 0.00 3.18
2222 3792 3.837213 AAGTGAAGCGAACAATCCATG 57.163 42.857 0.00 0.00 0.00 3.66
2229 3799 1.382522 CGAACAATCCATGACAGGGG 58.617 55.000 6.25 0.00 0.00 4.79
2230 3800 1.340017 CGAACAATCCATGACAGGGGT 60.340 52.381 6.25 0.00 0.00 4.95
2231 3801 2.094675 GAACAATCCATGACAGGGGTG 58.905 52.381 6.25 7.66 0.00 4.61
2320 3895 1.673665 CAGCTGCTTCGCCTTCCTT 60.674 57.895 0.00 0.00 0.00 3.36
2406 3981 0.112995 TGCTGCTTCCCTTGGTTGAT 59.887 50.000 0.00 0.00 0.00 2.57
2443 4018 2.049433 ACCTTCTTCACGACGCCG 60.049 61.111 0.00 0.00 42.50 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.191124 ACGTGGGGATTCTCTAGGTATTTTT 59.809 40.000 0.00 0.00 0.00 1.94
27 28 4.720273 ACGTGGGGATTCTCTAGGTATTTT 59.280 41.667 0.00 0.00 0.00 1.82
28 29 4.296056 ACGTGGGGATTCTCTAGGTATTT 58.704 43.478 0.00 0.00 0.00 1.40
29 30 3.896272 GACGTGGGGATTCTCTAGGTATT 59.104 47.826 0.00 0.00 0.00 1.89
30 31 3.117246 TGACGTGGGGATTCTCTAGGTAT 60.117 47.826 0.00 0.00 0.00 2.73
31 32 2.242965 TGACGTGGGGATTCTCTAGGTA 59.757 50.000 0.00 0.00 0.00 3.08
32 33 1.006758 TGACGTGGGGATTCTCTAGGT 59.993 52.381 0.00 0.00 0.00 3.08
33 34 1.776662 TGACGTGGGGATTCTCTAGG 58.223 55.000 0.00 0.00 0.00 3.02
34 35 2.496070 TGTTGACGTGGGGATTCTCTAG 59.504 50.000 0.00 0.00 0.00 2.43
35 36 2.232941 GTGTTGACGTGGGGATTCTCTA 59.767 50.000 0.00 0.00 0.00 2.43
36 37 1.002087 GTGTTGACGTGGGGATTCTCT 59.998 52.381 0.00 0.00 0.00 3.10
37 38 1.439679 GTGTTGACGTGGGGATTCTC 58.560 55.000 0.00 0.00 0.00 2.87
38 39 0.320421 CGTGTTGACGTGGGGATTCT 60.320 55.000 0.00 0.00 40.91 2.40
39 40 0.320073 TCGTGTTGACGTGGGGATTC 60.320 55.000 0.00 0.00 46.20 2.52
40 41 0.601841 GTCGTGTTGACGTGGGGATT 60.602 55.000 0.00 0.00 46.20 3.01
41 42 1.005394 GTCGTGTTGACGTGGGGAT 60.005 57.895 0.00 0.00 46.20 3.85
42 43 2.418356 GTCGTGTTGACGTGGGGA 59.582 61.111 0.00 0.00 46.20 4.81
59 60 0.739813 GAGGAAATGTGACCGTCCGG 60.740 60.000 3.76 3.76 42.03 5.14
60 61 0.246635 AGAGGAAATGTGACCGTCCG 59.753 55.000 0.00 0.00 35.19 4.79
61 62 1.405661 GGAGAGGAAATGTGACCGTCC 60.406 57.143 0.00 0.00 0.00 4.79
62 63 1.405661 GGGAGAGGAAATGTGACCGTC 60.406 57.143 0.00 0.00 0.00 4.79
63 64 0.613777 GGGAGAGGAAATGTGACCGT 59.386 55.000 0.00 0.00 0.00 4.83
64 65 0.460284 CGGGAGAGGAAATGTGACCG 60.460 60.000 0.00 0.00 0.00 4.79
65 66 0.744771 GCGGGAGAGGAAATGTGACC 60.745 60.000 0.00 0.00 0.00 4.02
66 67 0.036388 TGCGGGAGAGGAAATGTGAC 60.036 55.000 0.00 0.00 0.00 3.67
67 68 0.036388 GTGCGGGAGAGGAAATGTGA 60.036 55.000 0.00 0.00 0.00 3.58
68 69 0.036010 AGTGCGGGAGAGGAAATGTG 60.036 55.000 0.00 0.00 0.00 3.21
69 70 0.693049 AAGTGCGGGAGAGGAAATGT 59.307 50.000 0.00 0.00 0.00 2.71
70 71 1.373570 GAAGTGCGGGAGAGGAAATG 58.626 55.000 0.00 0.00 0.00 2.32
71 72 0.253327 GGAAGTGCGGGAGAGGAAAT 59.747 55.000 0.00 0.00 0.00 2.17
72 73 1.677552 GGAAGTGCGGGAGAGGAAA 59.322 57.895 0.00 0.00 0.00 3.13
73 74 2.291043 GGGAAGTGCGGGAGAGGAA 61.291 63.158 0.00 0.00 0.00 3.36
74 75 2.683933 GGGAAGTGCGGGAGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
75 76 3.787001 GGGGAAGTGCGGGAGAGG 61.787 72.222 0.00 0.00 0.00 3.69
76 77 3.003173 TGGGGAAGTGCGGGAGAG 61.003 66.667 0.00 0.00 0.00 3.20
77 78 3.319198 GTGGGGAAGTGCGGGAGA 61.319 66.667 0.00 0.00 0.00 3.71
78 79 4.410400 GGTGGGGAAGTGCGGGAG 62.410 72.222 0.00 0.00 0.00 4.30
81 82 3.801068 TTTGGGTGGGGAAGTGCGG 62.801 63.158 0.00 0.00 0.00 5.69
82 83 2.203422 TTTGGGTGGGGAAGTGCG 60.203 61.111 0.00 0.00 0.00 5.34
83 84 2.207229 GGTTTGGGTGGGGAAGTGC 61.207 63.158 0.00 0.00 0.00 4.40
84 85 0.774908 TAGGTTTGGGTGGGGAAGTG 59.225 55.000 0.00 0.00 0.00 3.16
85 86 1.073098 CTAGGTTTGGGTGGGGAAGT 58.927 55.000 0.00 0.00 0.00 3.01
86 87 0.323451 GCTAGGTTTGGGTGGGGAAG 60.323 60.000 0.00 0.00 0.00 3.46
87 88 1.068943 TGCTAGGTTTGGGTGGGGAA 61.069 55.000 0.00 0.00 0.00 3.97
88 89 1.464395 TGCTAGGTTTGGGTGGGGA 60.464 57.895 0.00 0.00 0.00 4.81
89 90 1.000896 CTGCTAGGTTTGGGTGGGG 60.001 63.158 0.00 0.00 0.00 4.96
90 91 1.678970 GCTGCTAGGTTTGGGTGGG 60.679 63.158 0.00 0.00 0.00 4.61
91 92 0.539438 TTGCTGCTAGGTTTGGGTGG 60.539 55.000 0.00 0.00 0.00 4.61
92 93 0.883833 CTTGCTGCTAGGTTTGGGTG 59.116 55.000 0.00 0.00 0.00 4.61
93 94 0.895559 GCTTGCTGCTAGGTTTGGGT 60.896 55.000 12.76 0.00 38.95 4.51
94 95 1.885871 GCTTGCTGCTAGGTTTGGG 59.114 57.895 12.76 0.00 38.95 4.12
95 96 1.237285 ACGCTTGCTGCTAGGTTTGG 61.237 55.000 12.76 0.00 40.11 3.28
96 97 0.110056 CACGCTTGCTGCTAGGTTTG 60.110 55.000 12.76 0.00 40.11 2.93
97 98 0.250295 TCACGCTTGCTGCTAGGTTT 60.250 50.000 12.76 0.00 40.11 3.27
98 99 0.250295 TTCACGCTTGCTGCTAGGTT 60.250 50.000 12.76 0.00 40.11 3.50
99 100 0.671781 CTTCACGCTTGCTGCTAGGT 60.672 55.000 12.76 6.36 40.11 3.08
100 101 0.671781 ACTTCACGCTTGCTGCTAGG 60.672 55.000 12.76 5.78 40.11 3.02
101 102 0.441533 CACTTCACGCTTGCTGCTAG 59.558 55.000 6.74 6.74 40.11 3.42
102 103 1.568612 GCACTTCACGCTTGCTGCTA 61.569 55.000 0.00 0.00 40.11 3.49
103 104 2.901292 GCACTTCACGCTTGCTGCT 61.901 57.895 0.00 0.00 40.11 4.24
104 105 2.428071 GCACTTCACGCTTGCTGC 60.428 61.111 0.00 0.00 38.57 5.25
105 106 3.337619 AGCACTTCACGCTTGCTG 58.662 55.556 0.00 0.00 44.93 4.41
107 108 2.253452 CCAGCACTTCACGCTTGC 59.747 61.111 0.00 0.00 37.72 4.01
108 109 2.253452 GCCAGCACTTCACGCTTG 59.747 61.111 0.00 0.00 37.72 4.01
109 110 2.980233 GGCCAGCACTTCACGCTT 60.980 61.111 0.00 0.00 37.72 4.68
113 114 4.329545 TCCCGGCCAGCACTTCAC 62.330 66.667 2.24 0.00 0.00 3.18
114 115 4.020617 CTCCCGGCCAGCACTTCA 62.021 66.667 2.24 0.00 0.00 3.02
124 125 4.785453 CTGACCTTGGCTCCCGGC 62.785 72.222 0.00 0.00 40.90 6.13
125 126 4.785453 GCTGACCTTGGCTCCCGG 62.785 72.222 0.00 0.00 0.00 5.73
126 127 4.020617 TGCTGACCTTGGCTCCCG 62.021 66.667 0.00 0.00 0.00 5.14
127 128 2.360475 GTGCTGACCTTGGCTCCC 60.360 66.667 0.00 0.00 0.00 4.30
128 129 1.673665 CTGTGCTGACCTTGGCTCC 60.674 63.158 0.00 0.00 0.00 4.70
129 130 0.673022 CTCTGTGCTGACCTTGGCTC 60.673 60.000 0.00 0.00 0.00 4.70
130 131 1.374190 CTCTGTGCTGACCTTGGCT 59.626 57.895 0.00 0.00 0.00 4.75
131 132 2.331132 GCTCTGTGCTGACCTTGGC 61.331 63.158 0.00 0.00 38.95 4.52
132 133 3.978272 GCTCTGTGCTGACCTTGG 58.022 61.111 0.00 0.00 38.95 3.61
141 142 4.767255 CACCGGGGAGCTCTGTGC 62.767 72.222 14.64 0.00 43.29 4.57
142 143 4.767255 GCACCGGGGAGCTCTGTG 62.767 72.222 8.67 15.84 0.00 3.66
144 145 3.335356 ATTGCACCGGGGAGCTCTG 62.335 63.158 8.67 4.50 33.00 3.35
145 146 3.011517 ATTGCACCGGGGAGCTCT 61.012 61.111 8.67 0.00 33.00 4.09
146 147 2.514824 GATTGCACCGGGGAGCTC 60.515 66.667 8.67 4.71 33.00 4.09
147 148 4.115199 GGATTGCACCGGGGAGCT 62.115 66.667 8.67 0.00 33.00 4.09
148 149 3.936772 TTGGATTGCACCGGGGAGC 62.937 63.158 8.67 8.65 0.00 4.70
149 150 2.046285 GTTGGATTGCACCGGGGAG 61.046 63.158 8.67 0.00 0.00 4.30
150 151 2.034999 GTTGGATTGCACCGGGGA 59.965 61.111 8.67 0.00 0.00 4.81
151 152 1.257055 ATTGTTGGATTGCACCGGGG 61.257 55.000 6.32 0.84 0.00 5.73
152 153 0.607620 AATTGTTGGATTGCACCGGG 59.392 50.000 6.32 0.00 0.00 5.73
153 154 3.584406 TTAATTGTTGGATTGCACCGG 57.416 42.857 0.00 0.00 0.00 5.28
154 155 4.742417 TGATTAATTGTTGGATTGCACCG 58.258 39.130 0.00 0.00 0.00 4.94
155 156 5.581874 CCTTGATTAATTGTTGGATTGCACC 59.418 40.000 0.00 0.00 0.00 5.01
156 157 6.397272 TCCTTGATTAATTGTTGGATTGCAC 58.603 36.000 0.00 0.00 0.00 4.57
157 158 6.602410 TCCTTGATTAATTGTTGGATTGCA 57.398 33.333 0.00 0.00 0.00 4.08
158 159 7.322664 TCTTCCTTGATTAATTGTTGGATTGC 58.677 34.615 0.00 0.00 0.00 3.56
159 160 9.143631 GTTCTTCCTTGATTAATTGTTGGATTG 57.856 33.333 0.00 0.00 0.00 2.67
160 161 9.093458 AGTTCTTCCTTGATTAATTGTTGGATT 57.907 29.630 0.00 0.00 0.00 3.01
161 162 8.526147 CAGTTCTTCCTTGATTAATTGTTGGAT 58.474 33.333 0.00 0.00 0.00 3.41
162 163 7.039784 CCAGTTCTTCCTTGATTAATTGTTGGA 60.040 37.037 0.00 0.00 0.00 3.53
163 164 7.039784 TCCAGTTCTTCCTTGATTAATTGTTGG 60.040 37.037 0.00 0.00 0.00 3.77
164 165 7.885297 TCCAGTTCTTCCTTGATTAATTGTTG 58.115 34.615 0.00 0.00 0.00 3.33
165 166 8.655935 ATCCAGTTCTTCCTTGATTAATTGTT 57.344 30.769 0.00 0.00 0.00 2.83
166 167 9.178758 GTATCCAGTTCTTCCTTGATTAATTGT 57.821 33.333 0.00 0.00 0.00 2.71
167 168 9.177608 TGTATCCAGTTCTTCCTTGATTAATTG 57.822 33.333 0.00 0.00 0.00 2.32
168 169 9.401058 CTGTATCCAGTTCTTCCTTGATTAATT 57.599 33.333 0.00 0.00 33.80 1.40
169 170 8.772250 TCTGTATCCAGTTCTTCCTTGATTAAT 58.228 33.333 0.00 0.00 39.82 1.40
170 171 8.146053 TCTGTATCCAGTTCTTCCTTGATTAA 57.854 34.615 0.00 0.00 39.82 1.40
171 172 7.733773 TCTGTATCCAGTTCTTCCTTGATTA 57.266 36.000 0.00 0.00 39.82 1.75
172 173 6.627087 TCTGTATCCAGTTCTTCCTTGATT 57.373 37.500 0.00 0.00 39.82 2.57
173 174 6.352565 CCTTCTGTATCCAGTTCTTCCTTGAT 60.353 42.308 0.00 0.00 39.82 2.57
174 175 5.046304 CCTTCTGTATCCAGTTCTTCCTTGA 60.046 44.000 0.00 0.00 39.82 3.02
175 176 5.046304 TCCTTCTGTATCCAGTTCTTCCTTG 60.046 44.000 0.00 0.00 39.82 3.61
176 177 5.094387 TCCTTCTGTATCCAGTTCTTCCTT 58.906 41.667 0.00 0.00 39.82 3.36
177 178 4.689062 TCCTTCTGTATCCAGTTCTTCCT 58.311 43.478 0.00 0.00 39.82 3.36
178 179 5.622346 ATCCTTCTGTATCCAGTTCTTCC 57.378 43.478 0.00 0.00 39.82 3.46
179 180 5.751028 CGAATCCTTCTGTATCCAGTTCTTC 59.249 44.000 0.00 0.00 39.82 2.87
180 181 5.187967 ACGAATCCTTCTGTATCCAGTTCTT 59.812 40.000 0.00 0.00 39.82 2.52
181 182 4.712337 ACGAATCCTTCTGTATCCAGTTCT 59.288 41.667 0.00 0.00 39.82 3.01
197 198 4.561735 TGAAAACTGGTTCAACGAATCC 57.438 40.909 0.00 0.00 34.59 3.01
202 203 3.350912 CGTCTTGAAAACTGGTTCAACG 58.649 45.455 5.09 5.77 41.45 4.10
231 232 2.739292 TCCGAGTTGTTCTTCGTCTTG 58.261 47.619 0.00 0.00 0.00 3.02
256 257 1.616865 CAAGTCTGGGTCGTACCTTGA 59.383 52.381 4.41 1.49 38.64 3.02
258 259 2.005370 TCAAGTCTGGGTCGTACCTT 57.995 50.000 4.41 0.00 38.64 3.50
263 264 0.680061 GGTCTTCAAGTCTGGGTCGT 59.320 55.000 0.00 0.00 0.00 4.34
266 267 0.763223 ACCGGTCTTCAAGTCTGGGT 60.763 55.000 13.42 3.81 34.65 4.51
282 283 0.179119 CGTTAGTAGCCCCTGAACCG 60.179 60.000 0.00 0.00 0.00 4.44
309 310 1.826096 GTGTTGAGAGACCCCCTAGTC 59.174 57.143 0.00 0.00 37.01 2.59
310 311 1.149288 TGTGTTGAGAGACCCCCTAGT 59.851 52.381 0.00 0.00 0.00 2.57
317 318 2.737252 GGAAACGATGTGTTGAGAGACC 59.263 50.000 0.00 0.00 40.84 3.85
318 319 2.737252 GGGAAACGATGTGTTGAGAGAC 59.263 50.000 0.00 0.00 40.84 3.36
319 320 3.040147 GGGAAACGATGTGTTGAGAGA 57.960 47.619 0.00 0.00 40.84 3.10
339 340 4.162690 GCCTAGCCCACCTGTCCG 62.163 72.222 0.00 0.00 0.00 4.79
357 358 1.681793 AGTAGGATTCGACCATGTCCG 59.318 52.381 0.00 0.00 35.89 4.79
415 761 4.961511 TGCAGGACGCCACGTGTC 62.962 66.667 15.65 5.40 41.37 3.67
421 767 4.408821 GGGATGTGCAGGACGCCA 62.409 66.667 6.19 0.00 41.33 5.69
424 770 3.723235 CTCGGGGATGTGCAGGACG 62.723 68.421 0.00 0.00 0.00 4.79
426 772 3.083349 CCTCGGGGATGTGCAGGA 61.083 66.667 0.00 0.00 33.58 3.86
427 773 4.864334 GCCTCGGGGATGTGCAGG 62.864 72.222 4.80 0.00 33.58 4.85
428 774 4.100084 TGCCTCGGGGATGTGCAG 62.100 66.667 4.80 0.00 33.58 4.41
432 778 3.771160 GTCGTGCCTCGGGGATGT 61.771 66.667 4.80 0.00 40.32 3.06
438 784 3.649277 CTCCTTGGTCGTGCCTCGG 62.649 68.421 0.00 1.92 40.32 4.63
439 785 2.125912 CTCCTTGGTCGTGCCTCG 60.126 66.667 1.06 0.00 38.35 4.63
442 788 3.050275 GTGCTCCTTGGTCGTGCC 61.050 66.667 0.00 0.00 37.90 5.01
463 809 2.044946 GATCCTGTTTGCCCCGCT 60.045 61.111 0.00 0.00 0.00 5.52
484 835 1.003355 CCACCATGGTCGAGCTTGT 60.003 57.895 16.53 12.51 31.35 3.16
493 844 4.684134 GCCACCTGCCACCATGGT 62.684 66.667 13.00 13.00 40.46 3.55
496 847 2.601367 GTTGCCACCTGCCACCAT 60.601 61.111 0.00 0.00 40.16 3.55
498 849 4.947147 TCGTTGCCACCTGCCACC 62.947 66.667 0.00 0.00 40.16 4.61
499 850 3.660111 GTCGTTGCCACCTGCCAC 61.660 66.667 0.00 0.00 40.16 5.01
530 883 2.678934 AACCCGCGCCTCTAGACA 60.679 61.111 0.00 0.00 0.00 3.41
555 908 1.636003 CTGGCCTACTCCCCTTCTTTT 59.364 52.381 3.32 0.00 0.00 2.27
568 923 0.907704 CTGTGTACACCCCTGGCCTA 60.908 60.000 22.91 0.16 0.00 3.93
574 929 1.538135 GGTCCCTGTGTACACCCCT 60.538 63.158 22.91 0.00 0.00 4.79
579 934 0.756070 TGTCGTGGTCCCTGTGTACA 60.756 55.000 0.00 0.00 0.00 2.90
581 936 1.344065 AATGTCGTGGTCCCTGTGTA 58.656 50.000 0.00 0.00 0.00 2.90
582 937 1.001633 GTAATGTCGTGGTCCCTGTGT 59.998 52.381 0.00 0.00 0.00 3.72
583 938 1.674817 GGTAATGTCGTGGTCCCTGTG 60.675 57.143 0.00 0.00 0.00 3.66
584 939 0.611714 GGTAATGTCGTGGTCCCTGT 59.388 55.000 0.00 0.00 0.00 4.00
587 942 0.179119 CTCGGTAATGTCGTGGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
598 953 1.134401 CCATGACTGGTGCTCGGTAAT 60.134 52.381 0.00 0.00 37.79 1.89
601 956 2.665000 CCATGACTGGTGCTCGGT 59.335 61.111 0.00 0.00 37.79 4.69
608 963 3.311110 ACCGTCGCCATGACTGGT 61.311 61.111 0.00 5.97 45.87 4.00
621 976 2.111043 CACTGTCAAGGCCACCGT 59.889 61.111 5.01 0.00 0.00 4.83
624 979 1.600916 GACCCACTGTCAAGGCCAC 60.601 63.158 5.01 0.00 43.85 5.01
625 980 2.829384 GGACCCACTGTCAAGGCCA 61.829 63.158 5.01 0.00 46.38 5.36
628 983 3.574952 TGGGACCCACTGTCAAGG 58.425 61.111 9.95 0.00 46.38 3.61
642 997 2.359975 GGAAAGCCGACAGGTGGG 60.360 66.667 0.00 0.00 40.50 4.61
645 1000 1.071471 CACAGGAAAGCCGACAGGT 59.929 57.895 0.00 0.00 40.50 4.00
658 1019 2.159430 TGAATGATCGCGTTTTCACAGG 59.841 45.455 5.77 0.00 0.00 4.00
663 1024 2.908626 GTGGTTGAATGATCGCGTTTTC 59.091 45.455 5.77 6.10 0.00 2.29
685 1046 8.639761 GGCTGTCTAATCTACTAGAAATACCAA 58.360 37.037 0.00 0.00 29.74 3.67
686 1047 7.040617 CGGCTGTCTAATCTACTAGAAATACCA 60.041 40.741 0.00 0.00 29.74 3.25
687 1048 7.174599 TCGGCTGTCTAATCTACTAGAAATACC 59.825 40.741 0.00 0.00 29.74 2.73
688 1049 8.097078 TCGGCTGTCTAATCTACTAGAAATAC 57.903 38.462 0.00 0.00 29.74 1.89
691 1052 7.584122 AATCGGCTGTCTAATCTACTAGAAA 57.416 36.000 0.00 0.00 29.74 2.52
693 1054 6.771267 TCAAATCGGCTGTCTAATCTACTAGA 59.229 38.462 0.00 0.00 0.00 2.43
694 1055 6.858993 GTCAAATCGGCTGTCTAATCTACTAG 59.141 42.308 0.00 0.00 0.00 2.57
696 1057 5.127194 TGTCAAATCGGCTGTCTAATCTACT 59.873 40.000 0.00 0.00 0.00 2.57
697 1058 5.348986 TGTCAAATCGGCTGTCTAATCTAC 58.651 41.667 0.00 0.00 0.00 2.59
709 1115 1.064654 GGAGCTCAATGTCAAATCGGC 59.935 52.381 17.19 0.00 0.00 5.54
741 1155 3.688673 GCCAGGAGATTTGAGTGAAAGAG 59.311 47.826 0.00 0.00 0.00 2.85
743 1157 3.415212 TGCCAGGAGATTTGAGTGAAAG 58.585 45.455 0.00 0.00 0.00 2.62
755 1169 1.605992 CCATCTTGCTGCCAGGAGA 59.394 57.895 0.50 0.00 30.01 3.71
756 1170 1.453379 CCCATCTTGCTGCCAGGAG 60.453 63.158 0.50 0.00 30.01 3.69
757 1171 2.679092 CCCATCTTGCTGCCAGGA 59.321 61.111 0.50 0.00 0.00 3.86
758 1172 3.145551 GCCCATCTTGCTGCCAGG 61.146 66.667 0.50 0.00 0.00 4.45
759 1173 1.756950 ATGCCCATCTTGCTGCCAG 60.757 57.895 0.00 0.00 0.00 4.85
760 1174 2.055633 CATGCCCATCTTGCTGCCA 61.056 57.895 0.00 0.00 0.00 4.92
761 1175 2.792947 CCATGCCCATCTTGCTGCC 61.793 63.158 0.00 0.00 0.00 4.85
762 1176 2.792947 CCCATGCCCATCTTGCTGC 61.793 63.158 0.00 0.00 0.00 5.25
763 1177 0.469331 ATCCCATGCCCATCTTGCTG 60.469 55.000 0.00 0.00 0.00 4.41
791 1259 0.301987 GCCTAAACTCGAAGCGATGC 59.698 55.000 0.00 0.00 34.61 3.91
792 1260 0.931005 GGCCTAAACTCGAAGCGATG 59.069 55.000 0.00 0.00 34.61 3.84
794 1262 0.535335 ATGGCCTAAACTCGAAGCGA 59.465 50.000 3.32 0.00 0.00 4.93
833 1332 3.630204 GCGTATGTCGGCCTGATG 58.370 61.111 0.00 0.00 40.26 3.07
873 1372 4.109675 CCTTGGGCTGGGTACGGG 62.110 72.222 0.00 0.00 0.00 5.28
874 1373 4.109675 CCCTTGGGCTGGGTACGG 62.110 72.222 0.00 0.00 39.82 4.02
875 1374 4.796495 GCCCTTGGGCTGGGTACG 62.796 72.222 22.47 0.00 46.22 3.67
876 1375 3.339093 AGCCCTTGGGCTGGGTAC 61.339 66.667 30.29 0.76 46.22 3.34
877 1376 3.015145 GAGCCCTTGGGCTGGGTA 61.015 66.667 35.01 0.00 46.05 3.69
879 1378 4.437587 CAGAGCCCTTGGGCTGGG 62.438 72.222 35.01 22.47 46.05 4.45
880 1379 3.333219 TCAGAGCCCTTGGGCTGG 61.333 66.667 35.01 25.41 46.05 4.85
881 1380 2.045536 GTCAGAGCCCTTGGGCTG 60.046 66.667 35.01 22.89 46.05 4.85
890 1389 2.665603 GTGGAGTGGGTCAGAGCC 59.334 66.667 12.14 12.14 36.00 4.70
895 1394 3.311110 GCGAGGTGGAGTGGGTCA 61.311 66.667 0.00 0.00 0.00 4.02
897 1396 4.954118 TGGCGAGGTGGAGTGGGT 62.954 66.667 0.00 0.00 0.00 4.51
901 1400 2.847234 TGGTTGGCGAGGTGGAGT 60.847 61.111 0.00 0.00 0.00 3.85
914 1413 2.237143 TGGCGATTCTCATTCTCTGGTT 59.763 45.455 0.00 0.00 0.00 3.67
916 1415 2.208431 GTGGCGATTCTCATTCTCTGG 58.792 52.381 0.00 0.00 0.00 3.86
918 1417 1.478510 ACGTGGCGATTCTCATTCTCT 59.521 47.619 0.00 0.00 0.00 3.10
919 1418 1.855360 GACGTGGCGATTCTCATTCTC 59.145 52.381 0.00 0.00 0.00 2.87
920 1419 1.799181 CGACGTGGCGATTCTCATTCT 60.799 52.381 0.00 0.00 0.00 2.40
921 1420 0.572590 CGACGTGGCGATTCTCATTC 59.427 55.000 0.00 0.00 0.00 2.67
922 1421 0.172578 TCGACGTGGCGATTCTCATT 59.827 50.000 0.00 0.00 35.01 2.57
923 1422 0.525668 GTCGACGTGGCGATTCTCAT 60.526 55.000 0.00 0.00 42.82 2.90
924 1423 1.154093 GTCGACGTGGCGATTCTCA 60.154 57.895 0.00 0.00 42.82 3.27
989 1498 4.789075 GCGCCATTGCTGCTGTGG 62.789 66.667 16.21 16.21 35.24 4.17
1057 1572 4.131088 GTGGGAGGCGACGGAGAC 62.131 72.222 0.00 0.00 0.00 3.36
1063 1578 2.682494 TAGTGGGTGGGAGGCGAC 60.682 66.667 0.00 0.00 0.00 5.19
1064 1579 2.363795 CTAGTGGGTGGGAGGCGA 60.364 66.667 0.00 0.00 0.00 5.54
1067 1582 2.041265 AGGCTAGTGGGTGGGAGG 59.959 66.667 0.00 0.00 0.00 4.30
1074 1589 2.042843 AGTCCCGAGGCTAGTGGG 60.043 66.667 11.72 11.72 44.75 4.61
1079 1594 2.750141 ATACTTCAGTCCCGAGGCTA 57.250 50.000 0.00 0.00 0.00 3.93
1080 1595 1.757699 GAATACTTCAGTCCCGAGGCT 59.242 52.381 0.00 0.00 0.00 4.58
1088 1603 0.529992 CGCCGGGGAATACTTCAGTC 60.530 60.000 14.46 0.00 0.00 3.51
1089 1604 1.520666 CGCCGGGGAATACTTCAGT 59.479 57.895 14.46 0.00 0.00 3.41
1090 1605 1.227556 CCGCCGGGGAATACTTCAG 60.228 63.158 21.95 0.00 38.47 3.02
1091 1606 2.904905 CCGCCGGGGAATACTTCA 59.095 61.111 21.95 0.00 38.47 3.02
1092 1607 2.590859 GCCGCCGGGGAATACTTC 60.591 66.667 21.95 0.00 38.47 3.01
1093 1608 4.185286 GGCCGCCGGGGAATACTT 62.185 66.667 21.95 0.00 38.47 2.24
1095 1610 4.620937 GAGGCCGCCGGGGAATAC 62.621 72.222 21.95 6.83 38.47 1.89
1585 2109 0.609957 AGCAGCAGCAGCAAACCATA 60.610 50.000 12.92 0.00 45.49 2.74
1646 2208 7.025963 GCATAGAAAATCAAAGTGGAAGTGAG 58.974 38.462 0.00 0.00 0.00 3.51
1647 2209 6.489700 TGCATAGAAAATCAAAGTGGAAGTGA 59.510 34.615 0.00 0.00 0.00 3.41
1665 2253 5.887598 AGTGGCAGTTCATAATTTGCATAGA 59.112 36.000 0.00 0.00 38.27 1.98
1666 2254 6.140303 AGTGGCAGTTCATAATTTGCATAG 57.860 37.500 0.00 0.00 38.27 2.23
1687 2339 3.498397 CCAAACATAGCACAACTCGAAGT 59.502 43.478 0.00 0.00 0.00 3.01
1708 2360 3.584406 TGGATCTGGATGGATATCACACC 59.416 47.826 4.83 4.88 34.90 4.16
1709 2361 4.323333 CCTGGATCTGGATGGATATCACAC 60.323 50.000 4.83 0.00 34.90 3.82
1715 2367 3.265221 GCATTCCTGGATCTGGATGGATA 59.735 47.826 0.00 0.00 31.78 2.59
1734 2386 1.151777 ACGGAAATTCGATCGCGCAT 61.152 50.000 11.09 0.00 37.46 4.73
1740 2392 5.064707 TCCATCTCAAAACGGAAATTCGATC 59.935 40.000 0.00 0.00 0.00 3.69
1749 2401 3.199727 TCCATGATCCATCTCAAAACGGA 59.800 43.478 0.00 0.00 0.00 4.69
1750 2402 3.544684 TCCATGATCCATCTCAAAACGG 58.455 45.455 0.00 0.00 0.00 4.44
1751 2403 4.395854 TGTTCCATGATCCATCTCAAAACG 59.604 41.667 0.00 0.00 0.00 3.60
1753 2405 6.247676 TCTTGTTCCATGATCCATCTCAAAA 58.752 36.000 0.00 0.00 0.00 2.44
1797 2449 6.994421 AGATCAAACATGGGTTTAGGTTTT 57.006 33.333 0.00 0.00 45.18 2.43
1846 3379 2.301296 CAGAGGGATTGACTGACAGTGT 59.699 50.000 14.14 0.00 34.07 3.55
1852 3385 2.619931 TGGAACAGAGGGATTGACTGA 58.380 47.619 0.00 0.00 35.85 3.41
1888 3421 9.904198 AAAGACCCCATTCCATAATTTTTATTG 57.096 29.630 0.00 0.00 0.00 1.90
1891 3424 8.983789 GGTAAAGACCCCATTCCATAATTTTTA 58.016 33.333 0.00 0.00 40.23 1.52
1896 3429 5.742562 TGGTAAAGACCCCATTCCATAAT 57.257 39.130 0.00 0.00 46.32 1.28
1897 3430 5.254267 TCTTGGTAAAGACCCCATTCCATAA 59.746 40.000 0.00 0.00 46.32 1.90
1898 3431 4.791334 TCTTGGTAAAGACCCCATTCCATA 59.209 41.667 0.00 0.00 46.32 2.74
1899 3432 3.596046 TCTTGGTAAAGACCCCATTCCAT 59.404 43.478 0.00 0.00 46.32 3.41
1901 3434 3.732048 TCTTGGTAAAGACCCCATTCC 57.268 47.619 0.00 0.00 46.32 3.01
1938 3487 7.001674 TGGAACTACAAGTATCATGTTTGGTT 58.998 34.615 0.00 0.00 32.27 3.67
1949 3500 8.321353 TCAATCAAGTGATGGAACTACAAGTAT 58.679 33.333 0.00 0.00 31.82 2.12
1999 3562 4.490743 TGTAACATCATGTACTGACACCG 58.509 43.478 0.00 0.00 38.76 4.94
2036 3599 1.933853 GGCCGCTGTACTAATGTCAAG 59.066 52.381 0.00 0.00 0.00 3.02
2052 3615 2.335712 GCCTTTGGAGTCTTGGCCG 61.336 63.158 0.00 0.00 37.81 6.13
2063 3626 3.320541 TGTCATTTGGTACTTGCCTTTGG 59.679 43.478 0.00 0.00 0.00 3.28
2081 3644 4.112634 CTGAAAAGAGTCGAGTGTTGTCA 58.887 43.478 18.98 18.98 0.00 3.58
2085 3648 3.179443 TGCTGAAAAGAGTCGAGTGTT 57.821 42.857 0.00 0.00 0.00 3.32
2112 3675 6.811253 AAAAATACGAGGTTGACATTGCTA 57.189 33.333 0.00 0.00 0.00 3.49
2169 3739 3.253432 GTGTTGAGGGTTTTGGATGAGAC 59.747 47.826 0.00 0.00 0.00 3.36
2173 3743 3.221771 TGAGTGTTGAGGGTTTTGGATG 58.778 45.455 0.00 0.00 0.00 3.51
2174 3744 3.593442 TGAGTGTTGAGGGTTTTGGAT 57.407 42.857 0.00 0.00 0.00 3.41
2183 3753 7.905604 TCACTTTGTAATATGAGTGTTGAGG 57.094 36.000 0.00 0.00 40.21 3.86
2194 3764 7.120579 TGGATTGTTCGCTTCACTTTGTAATAT 59.879 33.333 0.00 0.00 0.00 1.28
2204 3774 2.483877 TGTCATGGATTGTTCGCTTCAC 59.516 45.455 0.00 0.00 0.00 3.18
2205 3775 2.743664 CTGTCATGGATTGTTCGCTTCA 59.256 45.455 0.00 0.00 0.00 3.02
2215 3785 1.217057 AGCCACCCCTGTCATGGATT 61.217 55.000 0.00 0.00 35.33 3.01
2222 3792 0.910088 AGGAAGTAGCCACCCCTGTC 60.910 60.000 0.00 0.00 29.77 3.51
2293 3868 2.591066 CGAAGCAGCTGAACAAGAAG 57.409 50.000 20.43 0.00 0.00 2.85
2443 4018 1.087501 GCCTGAAGTCGACCAAATCC 58.912 55.000 13.01 0.00 0.00 3.01
2518 4093 3.946201 ACGCCAGGCAGCAAGTCT 61.946 61.111 13.30 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.