AutoCloner

Multiple sequence alignment - TraesCS5B01G555300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G555300	chr5B	100.000	4292	0	0	1	4292	704497243	704501534	0.000000e+00	7926.0
1	TraesCS5B01G555300	chr5B	90.842	1758	108	25	1097	2839	704760607	704758888	0.000000e+00	2305.0
2	TraesCS5B01G555300	chr5B	83.584	1730	221	35	864	2579	704723067	704724747	0.000000e+00	1563.0
3	TraesCS5B01G555300	chr5B	84.757	1522	189	29	1062	2577	704479157	704480641	0.000000e+00	1485.0
4	TraesCS5B01G555300	chr5B	84.408	1520	197	24	1062	2577	704824496	704823013	0.000000e+00	1458.0
5	TraesCS5B01G555300	chr5B	92.615	501	31	6	2882	3380	704758892	704758396	0.000000e+00	715.0
6	TraesCS5B01G555300	chr5B	92.550	349	20	2	149	496	704761492	704761149	2.980000e-136	496.0
7	TraesCS5B01G555300	chr5B	94.481	308	13	2	3720	4024	704758403	704758097	5.020000e-129	472.0
8	TraesCS5B01G555300	chr5B	86.508	252	8	5	589	814	704760974	704760723	1.980000e-63	254.0
9	TraesCS5B01G555300	chr5B	79.775	356	47	12	965	1298	704528140	704528492	7.180000e-58	235.0
10	TraesCS5B01G555300	chr5B	77.910	335	43	15	3711	4024	704317975	704317651	3.410000e-41	180.0
11	TraesCS5B01G555300	chr5B	83.721	86	4	8	2704	2780	704724826	704724910	5.950000e-09	73.1
12	TraesCS5B01G555300	chr5B	97.436	39	1	0	2704	2742	704724946	704724984	2.770000e-07	67.6
13	TraesCS5B01G555300	chr5B	89.286	56	0	1	498	547	704478697	704478752	9.960000e-07	65.8
14	TraesCS5B01G555300	chr4A	94.630	3985	90	37	386	4290	611074261	611070321	0.000000e+00	6059.0
15	TraesCS5B01G555300	chr4A	94.998	2779	88	14	1450	4222	610707201	610709934	0.000000e+00	4314.0
16	TraesCS5B01G555300	chr4A	83.754	1742	220	35	852	2579	611025449	611027141	0.000000e+00	1591.0
17	TraesCS5B01G555300	chr4A	83.826	1521	205	25	1062	2577	611203515	611202031	0.000000e+00	1408.0
18	TraesCS5B01G555300	chr4A	83.432	1521	211	25	1062	2577	610640272	610641756	0.000000e+00	1375.0
19	TraesCS5B01G555300	chr4A	93.103	348	19	1	149	496	610706032	610706374	4.950000e-139	505.0
20	TraesCS5B01G555300	chr4A	90.370	270	22	3	1097	1364	610706883	610707150	6.830000e-93	351.0
21	TraesCS5B01G555300	chr4A	99.310	145	1	0	1	145	611080641	611080497	3.290000e-66	263.0
22	TraesCS5B01G555300	chr4A	86.853	251	11	4	586	814	610706517	610706767	1.180000e-65	261.0
23	TraesCS5B01G555300	chr4A	85.597	243	24	5	149	390	611079968	611079736	1.190000e-60	244.0
24	TraesCS5B01G555300	chr4A	79.656	349	43	14	975	1298	610818695	610818350	4.320000e-55	226.0
25	TraesCS5B01G555300	chr4A	100.000	51	0	0	4220	4270	610710043	610710093	1.270000e-15	95.3
26	TraesCS5B01G555300	chr4A	92.727	55	4	0	4238	4292	610710085	610710139	3.560000e-11	80.5
27	TraesCS5B01G555300	chr4A	83.721	86	4	8	2704	2780	611027220	611027304	5.950000e-09	73.1
28	TraesCS5B01G555300	chr4A	97.436	39	1	0	2704	2742	611027339	611027377	2.770000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G555300	chr5B	704497243	704501534	4291	False	7926.000000	7926	100.000000	1	4292	1	chr5B.!!$F1	4291
1	TraesCS5B01G555300	chr5B	704823013	704824496	1483	True	1458.000000	1458	84.408000	1062	2577	1	chr5B.!!$R2	1515
2	TraesCS5B01G555300	chr5B	704758097	704761492	3395	True	848.400000	2305	91.399200	149	4024	5	chr5B.!!$R3	3875
3	TraesCS5B01G555300	chr5B	704478697	704480641	1944	False	775.400000	1485	87.021500	498	2577	2	chr5B.!!$F3	2079
4	TraesCS5B01G555300	chr5B	704723067	704724984	1917	False	567.900000	1563	88.247000	864	2780	3	chr5B.!!$F4	1916
5	TraesCS5B01G555300	chr4A	611070321	611074261	3940	True	6059.000000	6059	94.630000	386	4290	1	chr4A.!!$R2	3904
6	TraesCS5B01G555300	chr4A	611202031	611203515	1484	True	1408.000000	1408	83.826000	1062	2577	1	chr4A.!!$R3	1515
7	TraesCS5B01G555300	chr4A	610640272	610641756	1484	False	1375.000000	1375	83.432000	1062	2577	1	chr4A.!!$F1	1515
8	TraesCS5B01G555300	chr4A	610706032	610710139	4107	False	934.466667	4314	93.008500	149	4292	6	chr4A.!!$F2	4143
9	TraesCS5B01G555300	chr4A	611025449	611027377	1928	False	577.233333	1591	88.303667	852	2780	3	chr4A.!!$F3	1928
10	TraesCS5B01G555300	chr4A	611079736	611080641	905	True	253.500000	263	92.453500	1	390	2	chr4A.!!$R4	389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
520	1118	0.107800	CCGTACTCTCCTCAGTCCGA	60.108	60.000	0.00	27.55	4.55	F
1090	1835	0.110104	AATAGCAGGCCATCAGCTCC	59.890	55.000	14.09	43.05	4.70	F
1399	2144	1.001974	ACTCGCCTGTTGATTACTGCA	59.998	47.619	0.00	0.00	4.41	F
1532	2292	1.002544	GAGGCTGTAAGAACCAGTGCT	59.997	52.381	0.00	34.07	4.40	F
2668	3430	1.118833	GAGGCGCGTTCGAGTATAAC	58.881	55.000	8.43	38.10	1.89	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1399	2144	4.006319	GAGCTGGAGCACAAGATTTTAGT	58.994	43.478	0.00	45.16	2.24	R
2650	3412	0.452987	TGTTATACTCGAACGCGCCT	59.547	50.000	5.73	37.46	5.52	R
2852	3683	1.954382	TGTGAGTACGTGAGCAAGTCT	59.046	47.619	0.00	0.00	3.24	R
2853	3684	2.417339	TGTGAGTACGTGAGCAAGTC	57.583	50.000	0.00	0.00	3.01	R
3792	4625	0.102844	GCTAGCAGAGGAGAGCACAG	59.897	60.000	10.63	34.96	3.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
117	118	7.400339	AGAATTCTTGGACATCACTAGAAGGTA	59.600	37.037	0.88	0.00	0.00	3.08
202	728	3.009115	TGGGAGGGTGGCTACTGC	61.009	66.667	0.00	0.00	38.76	4.40
203	729	3.009115	GGGAGGGTGGCTACTGCA	61.009	66.667	0.00	0.00	41.91	4.41
206	732	0.960861	GGAGGGTGGCTACTGCAAAC	60.961	60.000	0.00	0.00	41.91	2.93
208	734	2.561373	GGTGGCTACTGCAAACGC	59.439	61.111	0.00	0.00	41.91	4.84
215	741	2.280628	GCTACTGCAAACGCCTTCTAT	58.719	47.619	0.00	0.00	39.41	1.98
239	765	5.472137	TGGCAATTTTAGTTGTAGAGGTGAC	59.528	40.000	0.00	0.00	0.00	3.67
289	815	4.748600	AGGAGTCGGTCTTTTTAGAAAACG	59.251	41.667	0.00	0.00	0.00	3.60
291	817	4.696455	AGTCGGTCTTTTTAGAAAACGGA	58.304	39.130	0.00	0.00	0.00	4.69
364	890	1.301293	CTGGGGGTTCCTTCTCAGC	59.699	63.158	0.00	0.00	36.20	4.26
404	930	4.186159	CGTTATAGGAAGCTCCCGAAAAA	58.814	43.478	0.00	0.00	37.19	1.94
452	978	5.961272	ACACAAATTTGGAGTTCTTTTCGT	58.039	33.333	21.74	0.00	0.00	3.85
518	1116	1.716826	CGCCGTACTCTCCTCAGTCC	61.717	65.000	0.00	0.00	0.00	3.85
519	1117	1.716826	GCCGTACTCTCCTCAGTCCG	61.717	65.000	0.00	0.00	0.00	4.79
520	1118	0.107800	CCGTACTCTCCTCAGTCCGA	60.108	60.000	0.00	0.00	27.55	4.55
521	1119	1.008329	CGTACTCTCCTCAGTCCGAC	58.992	60.000	0.00	0.00	27.55	4.79
522	1120	1.381522	GTACTCTCCTCAGTCCGACC	58.618	60.000	0.00	0.00	0.00	4.79
523	1121	0.107800	TACTCTCCTCAGTCCGACCG	60.108	60.000	0.00	0.00	0.00	4.79
524	1122	1.078356	CTCTCCTCAGTCCGACCGA	60.078	63.158	0.00	0.00	0.00	4.69
525	1123	1.370587	CTCTCCTCAGTCCGACCGAC	61.371	65.000	0.00	0.00	42.32	4.79
526	1124	2.360852	TCCTCAGTCCGACCGACC	60.361	66.667	0.00	0.00	43.08	4.79
527	1125	3.812019	CCTCAGTCCGACCGACCG	61.812	72.222	0.00	0.00	43.08	4.79
528	1126	2.745100	CTCAGTCCGACCGACCGA	60.745	66.667	0.00	0.00	43.08	4.69
529	1127	3.036783	CTCAGTCCGACCGACCGAC	62.037	68.421	0.00	0.00	43.08	4.79
550	1148	4.856607	CCGCGGCTCGACCTCTTC	62.857	72.222	14.67	0.00	41.67	2.87
551	1149	3.816524	CGCGGCTCGACCTCTTCT	61.817	66.667	0.00	0.00	41.67	2.85
945	1626	7.233389	ACCATAATACTAGTGCTACCATGAG	57.767	40.000	5.39	0.00	0.00	2.90
946	1627	6.102663	CCATAATACTAGTGCTACCATGAGC	58.897	44.000	5.39	0.00	43.16	4.26
1045	1775	1.242076	GCCCGATCAATTCCATCCAG	58.758	55.000	0.00	0.00	0.00	3.86
1090	1835	0.110104	AATAGCAGGCCATCAGCTCC	59.890	55.000	14.09	0.00	43.05	4.70
1301	2046	2.871182	TCTGACTACATCCATCACGC	57.129	50.000	0.00	0.00	0.00	5.34
1399	2144	1.001974	ACTCGCCTGTTGATTACTGCA	59.998	47.619	0.00	0.00	0.00	4.41
1532	2292	1.002544	GAGGCTGTAAGAACCAGTGCT	59.997	52.381	0.00	0.00	34.07	4.40
1692	2452	1.894756	TACCGTGGCAAGTTGGTGC	60.895	57.895	4.75	0.00	44.14	5.01
1724	2484	7.275888	TGCTATCAAAATTGAGTTCAACTGT	57.724	32.000	0.00	0.00	41.08	3.55
2342	3102	3.876300	CCTCCAAAGGTTCGCTCG	58.124	61.111	0.00	0.00	37.94	5.03
2426	3188	8.337118	TGGTTATCTATCTTTCAGATTCCCTT	57.663	34.615	0.00	0.00	36.20	3.95
2648	3410	4.635765	GCCAACTATCATGCTGTCAACTTA	59.364	41.667	0.00	0.00	0.00	2.24
2650	3412	6.108687	CCAACTATCATGCTGTCAACTTAGA	58.891	40.000	0.00	0.00	0.00	2.10
2654	3416	1.662629	CATGCTGTCAACTTAGAGGCG	59.337	52.381	0.00	0.00	0.00	5.52
2668	3430	1.118833	GAGGCGCGTTCGAGTATAAC	58.881	55.000	8.43	0.00	38.10	1.89
2848	3679	8.776376	AAAATGACAATTTGACAAAAGTCTGT	57.224	26.923	24.90	17.07	36.11	3.41
2849	3680	8.776376	AAATGACAATTTGACAAAAGTCTGTT	57.224	26.923	24.90	19.46	34.63	3.16
2850	3681	8.776376	AATGACAATTTGACAAAAGTCTGTTT	57.224	26.923	24.90	17.36	33.38	2.83
2851	3682	7.579589	TGACAATTTGACAAAAGTCTGTTTG	57.420	32.000	24.90	16.83	42.93	2.93
2852	3683	7.374272	TGACAATTTGACAAAAGTCTGTTTGA	58.626	30.769	24.90	10.79	40.29	2.69
2853	3684	7.541783	TGACAATTTGACAAAAGTCTGTTTGAG	59.458	33.333	24.90	2.93	40.29	3.02
2854	3685	7.601856	ACAATTTGACAAAAGTCTGTTTGAGA	58.398	30.769	4.41	0.00	40.29	3.27
2870	3701	2.991434	GAGACTTGCTCACGTACTCA	57.009	50.000	0.00	0.00	43.38	3.41
2871	3702	2.586900	GAGACTTGCTCACGTACTCAC	58.413	52.381	0.00	0.00	43.38	3.51
2872	3703	1.954382	AGACTTGCTCACGTACTCACA	59.046	47.619	0.00	0.00	0.00	3.58
2873	3704	2.558795	AGACTTGCTCACGTACTCACAT	59.441	45.455	0.00	0.00	0.00	3.21
2874	3705	3.005897	AGACTTGCTCACGTACTCACATT	59.994	43.478	0.00	0.00	0.00	2.71
2875	3706	4.217767	AGACTTGCTCACGTACTCACATTA	59.782	41.667	0.00	0.00	0.00	1.90
2876	3707	5.073311	ACTTGCTCACGTACTCACATTAT	57.927	39.130	0.00	0.00	0.00	1.28
2877	3708	4.864806	ACTTGCTCACGTACTCACATTATG	59.135	41.667	0.00	0.00	0.00	1.90
2878	3709	4.450082	TGCTCACGTACTCACATTATGT	57.550	40.909	0.00	0.00	0.00	2.29
2879	3710	4.816392	TGCTCACGTACTCACATTATGTT	58.184	39.130	0.00	0.00	0.00	2.71
2880	3711	4.862574	TGCTCACGTACTCACATTATGTTC	59.137	41.667	0.00	0.00	0.00	3.18
2881	3712	5.103000	GCTCACGTACTCACATTATGTTCT	58.897	41.667	0.00	0.00	0.00	3.01
2882	3713	5.577164	GCTCACGTACTCACATTATGTTCTT	59.423	40.000	0.00	0.00	0.00	2.52
2883	3714	6.454318	GCTCACGTACTCACATTATGTTCTTG	60.454	42.308	0.00	0.00	0.00	3.02
2884	3715	6.683715	TCACGTACTCACATTATGTTCTTGA	58.316	36.000	0.00	0.00	0.00	3.02
3029	3861	9.202273	GATACAAGAATCTGATGAACCTATCAC	57.798	37.037	0.00	0.00	41.93	3.06
3076	3908	9.781834	TCAACAACTTAAAGAGTTTGTATGTTG	57.218	29.630	11.55	11.55	46.34	3.33
3347	4179	8.748179	ATCTCTATCTAGGGATTGAAAATCCA	57.252	34.615	18.29	1.19	40.55	3.41
3541	4373	2.101582	TCCACGTTTTCACCCCATTTTG	59.898	45.455	0.00	0.00	0.00	2.44
3547	4379	4.314961	GTTTTCACCCCATTTTGGATGAC	58.685	43.478	0.00	0.00	40.96	3.06
3663	4496	2.893398	CTGTCTCCCCCGTGCTAC	59.107	66.667	0.00	0.00	0.00	3.58
3714	4547	0.098728	CAAAGCATTCCCGCCTAACG	59.901	55.000	0.00	0.00	43.15	3.18
3792	4625	0.035739	TTGTTCCTCTGGTTACCGGC	59.964	55.000	5.12	0.00	0.00	6.13
3863	4696	4.140599	CCTCCGCTGCTCGAGCTT	62.141	66.667	35.27	0.00	46.64	3.74
4162	4998	9.700831	AAAATGGAGTAGCTTGGAGTAATTTAT	57.299	29.630	0.00	0.00	0.00	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
117	118	8.359642	TGTCTGCTCTTTAAAAATATGTTTGCT	58.640	29.630	0.78	0.00	0.00	3.91
151	152	9.667107	TTCGTCTGATAAGAAGGTCATTTATTT	57.333	29.630	0.00	0.00	0.00	1.40
154	155	6.750501	CGTTCGTCTGATAAGAAGGTCATTTA	59.249	38.462	0.00	0.00	30.08	1.40
155	156	5.577164	CGTTCGTCTGATAAGAAGGTCATTT	59.423	40.000	0.00	0.00	30.08	2.32
156	157	5.103000	CGTTCGTCTGATAAGAAGGTCATT	58.897	41.667	0.00	0.00	30.08	2.57
157	158	4.158025	ACGTTCGTCTGATAAGAAGGTCAT	59.842	41.667	10.66	0.00	39.44	3.06
158	159	3.504906	ACGTTCGTCTGATAAGAAGGTCA	59.495	43.478	10.66	0.00	39.44	4.02
208	734	8.506168	TCTACAACTAAAATTGCCATAGAAGG	57.494	34.615	0.00	0.00	32.47	3.46
215	741	5.472137	GTCACCTCTACAACTAAAATTGCCA	59.528	40.000	0.00	0.00	32.47	4.92
239	765	7.900782	AGAAAAGAATTGCCATGAGAAATTG	57.099	32.000	0.00	0.00	0.00	2.32
404	930	5.325239	CACCTTAATTTCAAAGTCCTCCCT	58.675	41.667	0.00	0.00	0.00	4.20
452	978	4.308526	TGGTGTGGAATTAGGCACAATA	57.691	40.909	0.00	0.00	33.88	1.90
547	1145	2.687935	CGGAAGAGGAGAAGAGGAGAAG	59.312	54.545	0.00	0.00	0.00	2.85
549	1147	1.683629	GCGGAAGAGGAGAAGAGGAGA	60.684	57.143	0.00	0.00	0.00	3.71
550	1148	0.744281	GCGGAAGAGGAGAAGAGGAG	59.256	60.000	0.00	0.00	0.00	3.69
551	1149	1.032657	CGCGGAAGAGGAGAAGAGGA	61.033	60.000	0.00	0.00	0.00	3.71
756	1409	2.277072	CCCCACCACCACACACAA	59.723	61.111	0.00	0.00	0.00	3.33
757	1410	3.814906	CCCCCACCACCACACACA	61.815	66.667	0.00	0.00	0.00	3.72
760	1413	4.218686	AAGCCCCCACCACCACAC	62.219	66.667	0.00	0.00	0.00	3.82
761	1414	4.217210	CAAGCCCCCACCACCACA	62.217	66.667	0.00	0.00	0.00	4.17
894	1575	1.681166	GCAAGTGGAGTGGAGCATCAT	60.681	52.381	0.00	0.00	36.25	2.45
949	1630	2.478335	TTAAACCGGGCTCCTGCAGG	62.478	60.000	27.87	27.87	41.91	4.85
950	1631	0.394352	ATTAAACCGGGCTCCTGCAG	60.394	55.000	6.78	6.78	41.91	4.41
1090	1835	0.455633	GCCAGAATGCTCAACGCTTG	60.456	55.000	0.00	0.00	40.11	4.01
1301	2046	3.861113	CGATTCCTTTGCATCAATTGGTG	59.139	43.478	14.63	14.63	0.00	4.17
1399	2144	4.006319	GAGCTGGAGCACAAGATTTTAGT	58.994	43.478	0.00	0.00	45.16	2.24
1532	2292	7.770433	CACAAGTATCTCCATTTCCTTGATACA	59.230	37.037	12.10	0.00	40.84	2.29
1692	2452	6.618811	ACTCAATTTTGATAGCAAGCTCTTG	58.381	36.000	0.00	5.31	38.83	3.02
2342	3102	7.865706	ATTCATGACTTAAAGGATGGTGTAC	57.134	36.000	0.00	0.00	0.00	2.90
2393	3154	8.260818	TCTGAAAGATAGATAACCAAAGGTCAG	58.739	37.037	0.00	0.00	38.67	3.51
2454	3216	7.974675	ACCTCAATTGTAAATACGTCATCTTG	58.025	34.615	5.13	0.00	0.00	3.02
2648	3410	1.019673	TTATACTCGAACGCGCCTCT	58.980	50.000	5.73	0.00	37.46	3.69
2650	3412	0.452987	TGTTATACTCGAACGCGCCT	59.547	50.000	5.73	0.00	37.46	5.52
2654	3416	4.738252	TCATCACATGTTATACTCGAACGC	59.262	41.667	0.00	0.00	0.00	4.84
2668	3430	4.329256	CAGCACAGTACTTCTCATCACATG	59.671	45.833	0.00	0.00	0.00	3.21
2851	3682	2.031069	TGTGAGTACGTGAGCAAGTCTC	60.031	50.000	0.00	1.86	42.23	3.36
2852	3683	1.954382	TGTGAGTACGTGAGCAAGTCT	59.046	47.619	0.00	0.00	0.00	3.24
2853	3684	2.417339	TGTGAGTACGTGAGCAAGTC	57.583	50.000	0.00	0.00	0.00	3.01
2854	3685	3.386768	AATGTGAGTACGTGAGCAAGT	57.613	42.857	0.00	0.00	0.00	3.16
2855	3686	4.864806	ACATAATGTGAGTACGTGAGCAAG	59.135	41.667	0.00	0.00	0.00	4.01
2856	3687	4.816392	ACATAATGTGAGTACGTGAGCAA	58.184	39.130	0.00	0.00	0.00	3.91
2857	3688	4.450082	ACATAATGTGAGTACGTGAGCA	57.550	40.909	0.00	0.00	0.00	4.26
2858	3689	5.103000	AGAACATAATGTGAGTACGTGAGC	58.897	41.667	0.00	0.00	0.00	4.26
2859	3690	6.806739	TCAAGAACATAATGTGAGTACGTGAG	59.193	38.462	0.00	0.00	0.00	3.51
2860	3691	6.584942	GTCAAGAACATAATGTGAGTACGTGA	59.415	38.462	0.00	0.00	0.00	4.35
2861	3692	6.586463	AGTCAAGAACATAATGTGAGTACGTG	59.414	38.462	0.00	0.00	0.00	4.49
2862	3693	6.688578	AGTCAAGAACATAATGTGAGTACGT	58.311	36.000	0.00	0.00	0.00	3.57
2863	3694	7.582435	AAGTCAAGAACATAATGTGAGTACG	57.418	36.000	0.00	0.00	0.00	3.67
2864	3695	8.988934	TGAAAGTCAAGAACATAATGTGAGTAC	58.011	33.333	0.00	0.00	0.00	2.73
2865	3696	9.208022	CTGAAAGTCAAGAACATAATGTGAGTA	57.792	33.333	0.00	0.00	0.00	2.59
2866	3697	8.092521	CTGAAAGTCAAGAACATAATGTGAGT	57.907	34.615	0.00	0.00	0.00	3.41
3076	3908	3.047796	CGATGCATGCTTTAAATCCTGC	58.952	45.455	20.33	11.05	0.00	4.85
3541	4373	3.368531	GGGAGGAAGCATATACGTCATCC	60.369	52.174	12.52	12.52	44.77	3.51
3547	4379	1.344438	TGCAGGGAGGAAGCATATACG	59.656	52.381	0.00	0.00	32.55	3.06
3647	4480	2.682494	GGTAGCACGGGGGAGACA	60.682	66.667	0.00	0.00	0.00	3.41
3657	4490	2.742372	CGCCACACCTGGTAGCAC	60.742	66.667	13.88	0.00	40.17	4.40
3675	4508	1.269621	GGACGATCGGATAACACCCAG	60.270	57.143	20.98	0.00	0.00	4.45
3714	4547	7.778470	ATTATACAGAAGCAAGCAGTTACTC	57.222	36.000	0.00	0.00	0.00	2.59
3792	4625	0.102844	GCTAGCAGAGGAGAGCACAG	59.897	60.000	10.63	0.00	34.96	3.66
3863	4696	0.537188	GCCTGAGTAGGTAAGCAGCA	59.463	55.000	0.00	0.00	46.41	4.41
3942	4775	6.592607	TCAACGGATACACTAGGAAAAATGAC	59.407	38.462	0.00	0.00	0.00	3.06
4162	4998	4.164843	ACTCCAAGCAAAAGTCCTACAA	57.835	40.909	0.00	0.00	0.00	2.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.