AutoCloner

Multiple sequence alignment - TraesCS5B01G553500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G553500	chr5B	100.000	3255	0	0	1	3255	703528546	703531800	0.000000e+00	6011.0
1	TraesCS5B01G553500	chr5B	92.984	2751	149	22	1	2730	699414289	699417016	0.000000e+00	3971.0
2	TraesCS5B01G553500	chr5B	80.291	1441	237	32	760	2179	703634051	703635465	0.000000e+00	1044.0
3	TraesCS5B01G553500	chr5B	88.868	521	31	7	2729	3248	699417067	699417561	1.660000e-172	616.0
4	TraesCS5B01G553500	chr5B	88.235	102	11	1	2726	2826	703642954	703643055	1.590000e-23	121.0
5	TraesCS5B01G553500	chr5B	93.548	62	2	1	691	752	699415028	699415087	1.240000e-14	91.6
6	TraesCS5B01G553500	chr5B	93.548	62	2	1	691	752	703529283	703529342	1.240000e-14	91.6
7	TraesCS5B01G553500	chr5D	91.282	2581	157	33	1	2560	551119061	551121594	0.000000e+00	3458.0
8	TraesCS5B01G553500	chr5D	83.164	1378	178	28	746	2107	543465706	543464367	0.000000e+00	1210.0
9	TraesCS5B01G553500	chr5D	81.645	839	143	8	1652	2482	552394901	552394066	0.000000e+00	686.0
10	TraesCS5B01G553500	chr5D	89.655	522	50	4	2729	3248	551121772	551122291	0.000000e+00	662.0
11	TraesCS5B01G553500	chr5D	89.844	256	23	2	3001	3255	552388754	552388501	3.130000e-85	326.0
12	TraesCS5B01G553500	chr5D	89.453	256	26	1	3001	3255	552324243	552323988	4.050000e-84	322.0
13	TraesCS5B01G553500	chr5D	93.939	132	8	0	2599	2730	551121590	551121721	1.980000e-47	200.0
14	TraesCS5B01G553500	chr5D	89.381	113	11	1	2726	2837	552393933	552393821	1.220000e-29	141.0
15	TraesCS5B01G553500	chr5D	88.764	89	8	2	2644	2730	552394068	552393980	1.230000e-19	108.0
16	TraesCS5B01G553500	chr5D	85.000	100	14	1	2617	2715	551115778	551115877	2.070000e-17	100.0
17	TraesCS5B01G553500	chr5D	93.548	62	2	2	691	752	551119773	551119832	1.240000e-14	91.6
18	TraesCS5B01G553500	chr4A	93.478	1886	101	7	757	2640	624452691	624450826	0.000000e+00	2782.0
19	TraesCS5B01G553500	chr4A	94.373	1013	50	5	1720	2730	624482520	624481513	0.000000e+00	1548.0
20	TraesCS5B01G553500	chr4A	82.506	1652	235	27	809	2440	616840675	616839058	0.000000e+00	1400.0
21	TraesCS5B01G553500	chr4A	92.821	975	55	2	754	1728	624486038	624485079	0.000000e+00	1399.0
22	TraesCS5B01G553500	chr4A	82.733	1500	210	31	745	2228	625542222	625543688	0.000000e+00	1290.0
23	TraesCS5B01G553500	chr4A	78.483	1859	310	56	788	2602	616618732	616616920	0.000000e+00	1134.0
24	TraesCS5B01G553500	chr4A	81.614	1289	175	32	839	2083	616238367	616237097	0.000000e+00	1011.0
25	TraesCS5B01G553500	chr4A	78.973	1246	234	21	1199	2441	616791310	616790090	0.000000e+00	824.0
26	TraesCS5B01G553500	chr4A	91.603	524	42	2	2729	3251	624444264	624443742	0.000000e+00	723.0
27	TraesCS5B01G553500	chr4A	91.489	517	43	1	2729	3244	624481462	624480946	0.000000e+00	710.0
28	TraesCS5B01G553500	chr4A	90.347	404	37	2	2	404	624486711	624486309	2.220000e-146	529.0
29	TraesCS5B01G553500	chr4A	89.604	404	40	2	2	404	624453365	624452963	2.240000e-141	512.0
30	TraesCS5B01G553500	chr4A	85.358	321	23	13	442	750	624452961	624452653	8.770000e-81	311.0
31	TraesCS5B01G553500	chr4A	84.615	325	24	16	442	752	624486307	624485995	1.900000e-77	300.0
32	TraesCS5B01G553500	chr4A	93.814	97	6	0	2634	2730	624444411	624444315	2.620000e-31	147.0
33	TraesCS5B01G553500	chr1A	94.669	1013	47	5	1720	2730	569742047	569743054	0.000000e+00	1565.0
34	TraesCS5B01G553500	chr1A	93.880	1013	54	6	1720	2730	569702109	569703115	0.000000e+00	1520.0
35	TraesCS5B01G553500	chr1A	93.781	1013	56	5	1720	2730	569660299	569661306	0.000000e+00	1515.0
36	TraesCS5B01G553500	chr1A	93.231	975	57	4	754	1728	569698566	569699531	0.000000e+00	1426.0
37	TraesCS5B01G553500	chr1A	92.828	976	53	4	754	1728	569738528	569739487	0.000000e+00	1399.0
38	TraesCS5B01G553500	chr1A	92.103	975	59	7	754	1728	569656787	569657743	0.000000e+00	1358.0
39	TraesCS5B01G553500	chr1A	91.747	521	42	1	2729	3248	569743105	569743625	0.000000e+00	723.0
40	TraesCS5B01G553500	chr1A	91.171	521	45	1	2729	3248	569703166	569703686	0.000000e+00	706.0
41	TraesCS5B01G553500	chr1A	90.019	521	45	4	2729	3248	569661357	569661871	0.000000e+00	667.0
42	TraesCS5B01G553500	chr1A	90.323	403	37	2	2	403	569697895	569698296	8.000000e-146	527.0
43	TraesCS5B01G553500	chr1A	89.109	404	42	2	2	404	569656128	569656530	4.850000e-138	501.0
44	TraesCS5B01G553500	chr1A	88.424	406	41	5	2	404	569737857	569738259	4.880000e-133	484.0
45	TraesCS5B01G553500	chr1A	85.404	322	25	14	442	752	569698299	569698609	6.780000e-82	315.0
46	TraesCS5B01G553500	chr1A	84.472	322	28	12	442	752	569738261	569738571	6.830000e-77	298.0
47	TraesCS5B01G553500	chr1A	83.072	319	26	18	442	752	569656532	569656830	6.920000e-67	265.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G553500	chr5B	703528546	703531800	3254	False	3051.300000	6011	96.774000	1	3255	2	chr5B.!!$F4	3254
1	TraesCS5B01G553500	chr5B	699414289	699417561	3272	False	1559.533333	3971	91.800000	1	3248	3	chr5B.!!$F3	3247
2	TraesCS5B01G553500	chr5B	703634051	703635465	1414	False	1044.000000	1044	80.291000	760	2179	1	chr5B.!!$F1	1419
3	TraesCS5B01G553500	chr5D	543464367	543465706	1339	True	1210.000000	1210	83.164000	746	2107	1	chr5D.!!$R1	1361
4	TraesCS5B01G553500	chr5D	551115778	551122291	6513	False	902.320000	3458	90.684800	1	3248	5	chr5D.!!$F1	3247
5	TraesCS5B01G553500	chr5D	552393821	552394901	1080	True	311.666667	686	86.596667	1652	2837	3	chr5D.!!$R4	1185
6	TraesCS5B01G553500	chr4A	616839058	616840675	1617	True	1400.000000	1400	82.506000	809	2440	1	chr4A.!!$R4	1631
7	TraesCS5B01G553500	chr4A	625542222	625543688	1466	False	1290.000000	1290	82.733000	745	2228	1	chr4A.!!$F1	1483
8	TraesCS5B01G553500	chr4A	624450826	624453365	2539	True	1201.666667	2782	89.480000	2	2640	3	chr4A.!!$R6	2638
9	TraesCS5B01G553500	chr4A	616616920	616618732	1812	True	1134.000000	1134	78.483000	788	2602	1	chr4A.!!$R2	1814
10	TraesCS5B01G553500	chr4A	616237097	616238367	1270	True	1011.000000	1011	81.614000	839	2083	1	chr4A.!!$R1	1244
11	TraesCS5B01G553500	chr4A	624480946	624486711	5765	True	897.200000	1548	90.729000	2	3244	5	chr4A.!!$R7	3242
12	TraesCS5B01G553500	chr4A	616790090	616791310	1220	True	824.000000	824	78.973000	1199	2441	1	chr4A.!!$R3	1242
13	TraesCS5B01G553500	chr4A	624443742	624444411	669	True	435.000000	723	92.708500	2634	3251	2	chr4A.!!$R5	617
14	TraesCS5B01G553500	chr1A	569697895	569703686	5791	False	898.800000	1520	90.801800	2	3248	5	chr1A.!!$F2	3246
15	TraesCS5B01G553500	chr1A	569737857	569743625	5768	False	893.800000	1565	90.428000	2	3248	5	chr1A.!!$F3	3246
16	TraesCS5B01G553500	chr1A	569656128	569661871	5743	False	861.200000	1515	89.616800	2	3248	5	chr1A.!!$F1	3246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
371	3658	0.104120	CGTTGATCCGGCCTACATGA	59.896	55.0	0.00	0.0	0.00	3.07	F
1631	5055	0.107703	GGTGCACCGATTCAGGATCA	60.108	55.0	22.49	0.0	34.23	2.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2237	8292	1.163420	TGTCAATGCACCACGTCACC	61.163	55.000	0.00	0.0	0.00	4.02	R
3219	9357	1.065782	TCTTGATCGGCGGAAAATCCA	60.066	47.619	7.21	0.0	35.91	3.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
140	3424	1.134818	CCATGTAGCAGCGACTTACCA	60.135	52.381	7.22	0.00	0.00	3.25
152	3436	1.677633	CTTACCACCAAAGGCCCGG	60.678	63.158	0.00	0.00	0.00	5.73
227	3511	1.984570	CGGGAGAAGAGGTGGCTCA	60.985	63.158	0.00	0.00	0.00	4.26
241	3525	1.210155	GCTCAACATGTTCGCCACC	59.790	57.895	8.48	0.00	0.00	4.61
242	3526	1.497278	CTCAACATGTTCGCCACCG	59.503	57.895	8.48	0.00	0.00	4.94
286	3572	1.596477	GACATGATGGAGCTCCGCC	60.596	63.158	27.43	20.72	39.43	6.13
291	3577	1.078143	GATGGAGCTCCGCCACTTT	60.078	57.895	27.43	6.18	35.91	2.66
371	3658	0.104120	CGTTGATCCGGCCTACATGA	59.896	55.000	0.00	0.00	0.00	3.07
381	3668	0.249238	GCCTACATGACCGAGCTCAG	60.249	60.000	15.40	4.66	0.00	3.35
382	3669	1.107114	CCTACATGACCGAGCTCAGT	58.893	55.000	15.40	8.74	0.00	3.41
395	3682	1.856265	GCTCAGTGCAAAGAACCCGG	61.856	60.000	0.00	0.00	42.31	5.73
397	3684	0.181587	TCAGTGCAAAGAACCCGGAA	59.818	50.000	0.73	0.00	0.00	4.30
401	3688	1.067846	GTGCAAAGAACCCGGAATTCC	60.068	52.381	15.01	15.01	0.00	3.01
409	3697	2.189521	CCGGAATTCCTCCCGTGG	59.810	66.667	22.05	10.85	43.93	4.94
417	3705	2.019807	TTCCTCCCGTGGACTAAACT	57.980	50.000	0.00	0.00	35.58	2.66
418	3706	1.553706	TCCTCCCGTGGACTAAACTC	58.446	55.000	0.00	0.00	0.00	3.01
445	3733	3.624861	CGAATCAAAGGAGAATGACCAGG	59.375	47.826	0.00	0.00	0.00	4.45
495	3787	3.160047	AGGAGGAGATGGCGGCAG	61.160	66.667	19.29	0.00	0.00	4.85
630	3936	8.126074	CAGCAGCTTATAGACTATATAGTTCGG	58.874	40.741	16.46	6.02	36.50	4.30
679	3985	3.544834	CGCACAACTCAACTGAACTGAAG	60.545	47.826	0.00	0.00	0.00	3.02
1367	4749	4.141298	GGAAATGGGAGAAGATGAGGATGT	60.141	45.833	0.00	0.00	0.00	3.06
1482	4899	2.504996	CCCTCTTCTTCATCTTCCAGCT	59.495	50.000	0.00	0.00	0.00	4.24
1587	5011	9.213799	AGTGAAGAAATTCTCAAGTATGACTTC	57.786	33.333	0.00	0.00	36.03	3.01
1631	5055	0.107703	GGTGCACCGATTCAGGATCA	60.108	55.000	22.49	0.00	34.23	2.92
1854	7873	2.509336	GAGGGCGGTGATGTCGTG	60.509	66.667	0.00	0.00	0.00	4.35
2074	8123	7.201530	GGAACAAACAAAACGATCGATCTCTAT	60.202	37.037	24.34	4.52	0.00	1.98
2107	8157	7.552458	AAAGTTTCATTTCAAATGTTCCCAC	57.448	32.000	9.98	1.93	0.00	4.61
2109	8159	5.130145	AGTTTCATTTCAAATGTTCCCACCA	59.870	36.000	9.98	0.00	0.00	4.17
2237	8292	0.609957	TGCAGAAAGGGTGATGCCTG	60.610	55.000	0.00	0.00	37.89	4.85
2247	8302	2.347490	GATGCCTGGTGACGTGGT	59.653	61.111	0.00	0.00	0.00	4.16
2377	8439	2.961531	TAGTAGCCCTTTTGGTGCAA	57.038	45.000	0.00	0.00	37.95	4.08
2402	8464	5.066893	TGGTGCTTGCTTGATTTCTCATATC	59.933	40.000	0.00	0.00	0.00	1.63
2454	8525	0.181587	TCCCCATGTTGTTCGTGTGT	59.818	50.000	0.00	0.00	0.00	3.72
2604	8679	9.950680	TCTTGTCATTTTGAAAATTCTACAGTC	57.049	29.630	0.00	0.00	0.00	3.51
2625	8700	4.005650	TCTGATGTCTTGCAATGAACCTC	58.994	43.478	0.00	2.70	0.00	3.85
2699	8774	4.586618	GCATCTGCAGACACGAGT	57.413	55.556	20.97	0.00	41.59	4.18
2741	8869	8.298140	TGAAAACTTTACAGTCTAGAGCTAGTC	58.702	37.037	0.00	0.00	34.84	2.59
2782	8910	5.485353	AGAAGTAGAGATGGTGATGGTTTCA	59.515	40.000	0.00	0.00	0.00	2.69
2803	8931	4.586001	TCAGCATGCTGTCTCACTGATATA	59.414	41.667	39.08	18.25	43.96	0.86
2804	8932	5.069516	TCAGCATGCTGTCTCACTGATATAA	59.930	40.000	39.08	17.84	43.96	0.98
2895	9030	9.764363	TGATGAGTATAACATGTAAACTGGATC	57.236	33.333	11.21	11.67	0.00	3.36
2915	9050	5.757320	GGATCTTGAGATACATGTTCAGGTG	59.243	44.000	2.30	0.00	35.44	4.00
2921	9056	5.714806	TGAGATACATGTTCAGGTGAGTACA	59.285	40.000	2.30	0.00	0.00	2.90
2928	9063	5.011090	TGTTCAGGTGAGTACAGATATGC	57.989	43.478	0.00	0.00	0.00	3.14
2951	9086	5.001237	TGTTGAATTGCTGCCTAATGATG	57.999	39.130	0.00	0.00	0.00	3.07
2983	9118	9.691362	AGTTTTTATTTCGTTATCTGTTGCATT	57.309	25.926	0.00	0.00	0.00	3.56
3024	9160	8.350722	TGCACAAAATGTATTTGCATGATTTTT	58.649	25.926	0.00	0.00	32.93	1.94
3087	9225	1.931172	CGTTTCGCGATAAGGGTGATT	59.069	47.619	10.88	0.00	44.77	2.57
3095	9233	4.504461	CGCGATAAGGGTGATTCTATATGC	59.496	45.833	0.00	0.00	0.00	3.14
3124	9262	5.801947	GCATGCAGTACCATTTAAAGAACTG	59.198	40.000	14.21	13.51	37.87	3.16
3146	9284	0.690762	TAGTTTGCTCTCCCGGCTTT	59.309	50.000	0.00	0.00	0.00	3.51
3181	9319	8.024145	TCTAAAATCCTCTTCCAGAATAGGTC	57.976	38.462	10.59	0.00	36.42	3.85
3219	9357	1.130054	TGAGGGCTTGTCCTGAGCTT	61.130	55.000	0.00	0.00	40.01	3.74
3254	9392	3.487120	TCAAGAGATGATCATGGCCTG	57.513	47.619	14.30	4.91	31.50	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	3335	4.082523	CACTCGGGGTGGATGCGT	62.083	66.667	0.00	0.00	41.90	5.24
152	3436	2.280865	GGCTACTACCGCATGCCC	60.281	66.667	13.15	0.23	37.81	5.36
179	3463	0.682292	TTTGGGATTTTCGTTGCCCC	59.318	50.000	0.00	0.00	39.93	5.80
250	3536	3.124921	GTACGCATGTGCCGCCTT	61.125	61.111	6.08	0.00	37.91	4.35
286	3572	2.725203	TTCGTCGGGCTCCCAAAGTG	62.725	60.000	5.70	0.00	35.37	3.16
316	3602	3.441011	CTATGGGGGTGTCGACGGC	62.441	68.421	11.62	6.23	0.00	5.68
351	3637	0.179084	CATGTAGGCCGGATCAACGT	60.179	55.000	5.05	0.00	0.00	3.99
355	3641	2.133195	GGTCATGTAGGCCGGATCA	58.867	57.895	5.05	0.00	28.17	2.92
371	3658	0.106708	TTCTTTGCACTGAGCTCGGT	59.893	50.000	22.85	22.85	45.94	4.69
381	3668	1.067846	GGAATTCCGGGTTCTTTGCAC	60.068	52.381	9.17	0.48	0.00	4.57
382	3669	1.203001	AGGAATTCCGGGTTCTTTGCA	60.203	47.619	18.82	0.00	42.08	4.08
395	3682	3.055312	AGTTTAGTCCACGGGAGGAATTC	60.055	47.826	0.00	0.00	39.92	2.17
397	3684	2.500504	GAGTTTAGTCCACGGGAGGAAT	59.499	50.000	0.00	0.00	39.92	3.01
401	3688	0.172803	CCGAGTTTAGTCCACGGGAG	59.827	60.000	0.00	0.00	39.92	4.30
409	3697	5.163982	CCTTTGATTCGAACCGAGTTTAGTC	60.164	44.000	0.00	0.00	37.14	2.59
417	3705	3.671008	TTCTCCTTTGATTCGAACCGA	57.329	42.857	0.00	0.00	0.00	4.69
418	3706	3.932710	TCATTCTCCTTTGATTCGAACCG	59.067	43.478	0.00	0.00	0.00	4.44
445	3733	1.618640	GGCAAGAGCTCGTCGAACAC	61.619	60.000	8.37	0.00	41.70	3.32
475	3764	4.292178	CCGCCATCTCCTCCTCGC	62.292	72.222	0.00	0.00	0.00	5.03
476	3765	4.292178	GCCGCCATCTCCTCCTCG	62.292	72.222	0.00	0.00	0.00	4.63
495	3787	2.409870	CCGGCCTCTCCATTGTTGC	61.410	63.158	0.00	0.00	34.01	4.17
535	3827	5.069648	GTGATAGTGATGATCCAACCTCTGA	59.930	44.000	0.00	0.00	0.00	3.27
603	3903	8.670135	CGAACTATATAGTCTATAAGCTGCTGT	58.330	37.037	15.72	0.00	34.99	4.40
630	3936	2.983592	CCGTGGGGTTTGGCTGAC	60.984	66.667	0.00	0.00	0.00	3.51
656	3962	1.665679	CAGTTCAGTTGAGTTGTGCGT	59.334	47.619	0.00	0.00	0.00	5.24
657	3963	1.933181	TCAGTTCAGTTGAGTTGTGCG	59.067	47.619	0.00	0.00	0.00	5.34
658	3964	3.790123	GCTTCAGTTCAGTTGAGTTGTGC	60.790	47.826	0.00	0.00	0.00	4.57
659	3965	3.544834	CGCTTCAGTTCAGTTGAGTTGTG	60.545	47.826	0.00	0.00	0.00	3.33
660	3966	2.609459	CGCTTCAGTTCAGTTGAGTTGT	59.391	45.455	0.00	0.00	0.00	3.32
679	3985	1.664874	GGTTTCAATTTCACGGTCCGC	60.665	52.381	12.28	0.00	0.00	5.54
718	4029	1.915769	GGGAGGGGATCGATGAGGG	60.916	68.421	0.54	0.00	0.00	4.30
830	4177	2.282391	GCAGTGATGGTGGTGGCA	60.282	61.111	0.00	0.00	0.00	4.92
834	4181	4.033776	CCCGGCAGTGATGGTGGT	62.034	66.667	0.00	0.00	0.00	4.16
1228	4604	2.282462	CAGGTTGGGCCAGTCCAC	60.282	66.667	24.67	13.69	40.61	4.02
1367	4749	2.732912	GCGAATGCAGCACAATCATCAA	60.733	45.455	0.00	0.00	42.15	2.57
1482	4899	2.112380	TTGGCTCGATGAATGCTTCA	57.888	45.000	0.00	1.85	45.01	3.02
1631	5055	7.092712	TGAGGATAGAGGAACTGACAATTTCAT	60.093	37.037	0.26	0.00	41.55	2.57
1854	7873	4.438346	AGCACTGTGGTGACGAAC	57.562	55.556	12.27	0.00	45.61	3.95
2107	8157	2.514458	ATCACCCTAACTTTGCCTGG	57.486	50.000	0.00	0.00	0.00	4.45
2109	8159	4.862641	ACATATCACCCTAACTTTGCCT	57.137	40.909	0.00	0.00	0.00	4.75
2237	8292	1.163420	TGTCAATGCACCACGTCACC	61.163	55.000	0.00	0.00	0.00	4.02
2247	8302	3.760738	TCAACCATACCTTGTCAATGCA	58.239	40.909	0.00	0.00	0.00	3.96
2377	8439	3.159472	TGAGAAATCAAGCAAGCACCAT	58.841	40.909	0.00	0.00	0.00	3.55
2454	8525	8.765488	ACAACATAATCCATCATCCAATTACA	57.235	30.769	0.00	0.00	0.00	2.41
2604	8679	3.128242	GGAGGTTCATTGCAAGACATCAG	59.872	47.826	19.64	1.33	0.00	2.90
2695	8770	9.166126	GTTTTCAAAATGGTAAGACTAAACTCG	57.834	33.333	0.00	0.00	0.00	4.18
2741	8869	2.074547	TCTTTAGGGCGAGACAAACG	57.925	50.000	0.00	0.00	0.00	3.60
2782	8910	5.070180	AGTTATATCAGTGAGACAGCATGCT	59.930	40.000	16.30	16.30	42.53	3.79
2818	8946	1.405821	ACGAACGCCAACCAAATTCAA	59.594	42.857	0.00	0.00	0.00	2.69
2872	9007	9.599866	CAAGATCCAGTTTACATGTTATACTCA	57.400	33.333	2.30	0.00	0.00	3.41
2895	9030	5.728471	ACTCACCTGAACATGTATCTCAAG	58.272	41.667	0.00	0.00	0.00	3.02
2921	9056	3.067742	GGCAGCAATTCAACAGCATATCT	59.932	43.478	0.00	0.00	0.00	1.98
2928	9063	4.707030	TCATTAGGCAGCAATTCAACAG	57.293	40.909	0.00	0.00	0.00	3.16
2934	9069	4.025360	TCCAACATCATTAGGCAGCAATT	58.975	39.130	0.00	0.00	0.00	2.32
2951	9086	9.673454	ACAGATAACGAAATAAAAACTTCCAAC	57.327	29.630	0.00	0.00	0.00	3.77
3024	9160	6.538742	ACTCAGAAAAGTCAAAATTCTCGACA	59.461	34.615	0.00	0.00	31.26	4.35
3068	9205	3.195661	AGAATCACCCTTATCGCGAAAC	58.804	45.455	15.24	0.00	0.00	2.78
3070	9207	4.866508	ATAGAATCACCCTTATCGCGAA	57.133	40.909	15.24	0.00	0.00	4.70
3073	9210	5.419542	TGCATATAGAATCACCCTTATCGC	58.580	41.667	0.00	0.00	0.00	4.58
3075	9212	7.226325	GCAGATGCATATAGAATCACCCTTATC	59.774	40.741	0.00	0.00	41.59	1.75
3095	9233	5.503662	TTAAATGGTACTGCATGCAGATG	57.496	39.130	45.50	26.43	46.30	2.90
3124	9262	1.413077	AGCCGGGAGAGCAAACTATAC	59.587	52.381	2.18	0.00	0.00	1.47
3134	9272	2.124507	TTGGACCAAAGCCGGGAGAG	62.125	60.000	3.84	0.00	0.00	3.20
3146	9284	6.353082	GGAAGAGGATTTTAGAGATTGGACCA	60.353	42.308	0.00	0.00	0.00	4.02
3181	9319	2.036346	TCATACTGTGCTGATCATCCGG	59.964	50.000	0.00	0.00	0.00	5.14
3219	9357	1.065782	TCTTGATCGGCGGAAAATCCA	60.066	47.619	7.21	0.00	35.91	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.